Start: 2019-02-13 09:47:13 UTC Package: r-cran-metamix Version: 0.3-1 Installed-Size: 1757 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.2-1), r-api-3.5, r-cran-data.table (>= 1.9.2), r-cran-matrix, r-cran-gtools, r-cran-rmpi, r-cran-ggplot2, libc6 (>= 2.2.5), libgcc1 (>= 1:3.0), libstdc++6 (>= 4.9) Suggests: r-cran-knitr Description: GNU R bayesian mixture analysis for metagenomic community profiling Homepage: https://cran.r-project.org/package=metaMix Description-md5: 9f51ca1b979fb77ee86077f0f70ab8bf Section: gnu-r Priority: optional Filename: pool/main/r/r-cran-metamix/r-cran-metamix_0.3-1_amd64.deb Size: 742564 MD5sum: 6321e6f9df3ad5bc05e47b9f30dec250 SHA256: 93777b4864854df0663477f673769704302cc4d36557ad7214c1c7ca8ea93506 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt r-cran-metamix=0.3-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.97~201902110933~0.96-23-gf3cc49da starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt r-cran-metamix=0.3-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp46p6QO 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp46p6QO 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp46p6QO', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m2.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp46p6QO', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp46p6QO/proc'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp46p6QO/proc'] 0m2.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/pts'] 0m2.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/pts'] 0m2.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/ptmx'] 0m2.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/ptmx'] 0m2.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/console'] 0m2.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/console'] 0m2.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/shm'] 0m2.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/shm'] 0m2.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m2.9s DEBUG: Created policy-rc.d and chmodded it. 0m2.9s DEBUG: Created resolv.conf. 0m2.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp46p6QO/tmp/scripts/ 0m2.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp46p6QO/tmp/scripts/ 0m2.9s INFO: Running scripts post_chroot_unpack 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'update'] 0m9.1s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [243 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8355 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6321 kB] Fetched 14.9 MB in 5s (3142 kB/s) Reading package lists... 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'update'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', '-yf', 'dist-upgrade'] 0m14.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt base-passwd gcc-8-base libapt-pkg5.0 libgcc1 libncursesw6 libpam-modules libpam-modules-bin libpam-runtime libpam0g libstdc++6 libtinfo6 ncurses-base ncurses-bin 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4874 kB of archives. After this operation, 118 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 ncurses-bin amd64 6.1+20181013-2 [406 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 gcc-8-base amd64 8.2.0-20 [189 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libgcc1 amd64 1:8.2.0-20 [40.7 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libstdc++6 amd64 8.2.0-20 [392 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libapt-pkg5.0 amd64 1.8.0~rc3 [966 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 apt amd64 1.8.0~rc3 [1356 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 base-passwd amd64 3.5.46 [56.7 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 ncurses-base all 6.1+20181013-2 [258 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libpam0g amd64 1.3.1-2 [126 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.3.1-2 [106 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 libpam-modules amd64 1.3.1-2 [309 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 libpam-runtime all 1.3.1-2 [211 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 libtinfo6 amd64 6.1+20181013-2 [325 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 libncursesw6 amd64 6.1+20181013-2 [132 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4874 kB in 0s (45.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4455 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2) over (6.1+20181013-1) ... Setting up ncurses-bin (6.1+20181013-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4455 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.2.0-20_amd64.deb ... Unpacking gcc-8-base:amd64 (8.2.0-20) over (8.2.0-19) ... Setting up gcc-8-base:amd64 (8.2.0-20) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4455 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-20_amd64.deb ... Unpacking libgcc1:amd64 (1:8.2.0-20) over (1:8.2.0-19) ... Setting up libgcc1:amd64 (1:8.2.0-20) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4455 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.2.0-20_amd64.deb ... Unpacking libstdc++6:amd64 (8.2.0-20) over (8.2.0-19) ... Setting up libstdc++6:amd64 (8.2.0-20) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4455 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.8.0~rc3_amd64.deb ... Unpacking libapt-pkg5.0:amd64 (1.8.0~rc3) over (1.8.0~rc2) ... Setting up libapt-pkg5.0:amd64 (1.8.0~rc3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4455 files and directories currently installed.) Preparing to unpack .../apt_1.8.0~rc3_amd64.deb ... Unpacking apt (1.8.0~rc3) over (1.8.0~rc2) ... Setting up apt (1.8.0~rc3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4467 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.46_amd64.deb ... Unpacking base-passwd (3.5.46) over (3.5.45) ... Setting up base-passwd (3.5.46) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4467 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2_all.deb ... Unpacking ncurses-base (6.1+20181013-2) over (6.1+20181013-1) ... Setting up ncurses-base (6.1+20181013-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4467 files and directories currently installed.) Preparing to unpack .../libpam0g_1.3.1-2_amd64.deb ... Unpacking libpam0g:amd64 (1.3.1-2) over (1.1.8-4) ... Setting up libpam0g:amd64 (1.3.1-2) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4467 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-2_amd64.deb ... Unpacking libpam-modules-bin (1.3.1-2) over (1.1.8-4) ... Setting up libpam-modules-bin (1.3.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4467 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-2_amd64.deb ... Unpacking libpam-modules:amd64 (1.3.1-2) over (1.1.8-4) ... Setting up libpam-modules:amd64 (1.3.1-2) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/limits.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4467 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-2_all.deb ... Unpacking libpam-runtime (1.3.1-2) over (1.1.8-4) ... Setting up libpam-runtime (1.3.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4527 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2) over (6.1+20181013-1) ... Setting up libtinfo6:amd64 (6.1+20181013-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4527 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2) over (6.1+20181013-1) ... Setting up libncursesw6:amd64 (6.1+20181013-2) ... Processing triggers for libc-bin (2.28-7) ... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', '-yf', 'dist-upgrade'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.3s DUMP: 697533aab553409790f4bea660dd01bd - 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.3s INFO: Running scripts post_setup 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_dummy_users'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_dummy_users'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_forbid_home'] 0m15.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_forbid_home'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_force-unsafe-io'] 0m15.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_force-unsafe-io'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_minimize'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_minimize'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_squeeze-backports'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_squeeze-backports'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_zz_backports'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_setup_zz_backports'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'clean'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'clean'] 0m15.5s DEBUG: Recording chroot state 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m16.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.0~rc3 install ok installed base-files base-files 10.1 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-2 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-1 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.70 install ok installed debian-archive-keyring debian-archive-keyring 2018.1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.6-1 install ok installed dpkg dpkg 1.19.4 install ok installed e2fsprogs e2fsprogs 1.44.5-1 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190105-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.2.0-20 install ok installed gpgv gpgv 2.2.12-1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.0~rc3 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.8.4-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9 install ok installed libc-bin libc-bin 2.28-7 install ok installed libc6:amd64 libc6 2.28-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.3 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.247 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.2.0-20 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.14-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-2 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-2 install ok installed libpam-runtime libpam-runtime 1.3.1-2 install ok installed libpam0g:amd64 libpam0g 1.3.1-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-11 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1 install ok installed libstdc++6:amd64 libstdc++6 8.2.0-20 install ok installed libsystemd0:amd64 libsystemd0 240-5 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2 install ok installed libudev1:amd64 libudev1 240-5 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-6 install ok installed tar tar 1.30+dfsg-5 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-divert', '--list'] 0m16.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-divert', '--list'] 0m16.3s INFO: Running scripts is_testable 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/is_testable_uninstallable'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/is_testable_uninstallable'] 0m16.3s INFO: apt-cache does not know about any of the requested packages 0m16.3s INFO: Running scripts pre_test 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_test_exceptions'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_test_exceptions'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_test_root_password'] 0m16.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_test_root_password'] 0m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 0m17.3s DEBUG: No broken symlinks as far as we can find. 0m17.3s INFO: Running scripts pre_install 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_log_alternatives'] 0m17.4s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_install_log_alternatives'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-cache', 'show', '--no-all-versions', 'r-cran-metamix=0.3-1'] 0m19.0s DUMP: Package: r-cran-metamix Version: 0.3-1 Installed-Size: 1757 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-base-core (>= 3.5.2-1), r-api-3.5, r-cran-data.table (>= 1.9.2), r-cran-matrix, r-cran-gtools, r-cran-rmpi, r-cran-ggplot2, libc6 (>= 2.2.5), libgcc1 (>= 1:3.0), libstdc++6 (>= 4.9) Suggests: r-cran-knitr Description-en: GNU R bayesian mixture analysis for metagenomic community profiling Resolves complex metagenomic mixtures by analysing deep sequencing data, using a mixture model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture. Description-md5: 9f51ca1b979fb77ee86077f0f70ab8bf Homepage: https://cran.r-project.org/package=metaMix Section: gnu-r Priority: optional Filename: pool/main/r/r-cran-metamix/r-cran-metamix_0.3-1_amd64.deb Size: 742564 MD5sum: 6321e6f9df3ad5bc05e47b9f30dec250 SHA256: 93777b4864854df0663477f673769704302cc4d36557ad7214c1c7ca8ea93506 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-cache', 'show', '--no-all-versions', 'r-cran-metamix=0.3-1'] 0m19.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: r-base-core (>= 3.5.2-1), r-api-3.5, r-cran-data.table (>= 1.9.2), r-cran-matrix, r-cran-gtools, r-cran-rmpi, r-cran-ggplot2, libc6 (>= 2.2.5), libgcc1 (>= 1:3.0), libstdc++6 (>= 4.9) 0m19.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprUmQDE/piuparts-depends-dummy'] 0m19.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmprUmQDE/piuparts-depends-dummy.deb'. 0m19.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprUmQDE/piuparts-depends-dummy'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m19.0s DUMP: 1.8.0~rc3 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m19.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmprUmQDE/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp46p6QO/tmp 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m47.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas3 libbsd0 libcairo2 libcurl4 libdatrie1 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu63 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libltdl7 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpixman-1-0 libpmix2 libpng16-16 libpsl5 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssl r-base-core r-cran-assertthat r-cran-cli r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-digest r-cran-fansi r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-rmpi r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-viridislite r-cran-withr readline-common sensible-utils tzdata ucf unzip x11-common xdg-utils zip Suggested packages: krb5-doc krb5-user libhwloc-contrib-plugins pciutils tcl8.6 tk8.6 opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-webshot r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-png r-cran-knitr r-cran-rmarkdown r-cran-viridis r-cran-rstudioapi r-cran-bit64 r-cran-curl r-cran-r.utils r-cran-xts r-cran-zoo r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-dbi r-cran-rsqlite r-cran-forcats libgdal-dev r-cran-getopt r-cran-testthat r-cran-foreach r-cran-doparallel r-cran-iterators r-cran-inline r-cran-rsprng r-cran-dichromat r-cran-htmltools readline-doc Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers krb5-locales publicsuffix libsasl2-modules libopenmpi-dev xauth r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-mockery r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-lubridate r-cran-domc r-cran-abind r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-mockr r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas3 libbsd0 libcairo2 libcurl4 libdatrie1 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu63 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libltdl7 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpixman-1-0 libpmix2 libpng16-16 libpsl5 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssl piuparts-depends-dummy r-base-core r-cran-assertthat r-cran-cli r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-digest r-cran-fansi r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-rmpi r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-viridislite r-cran-withr readline-common sensible-utils tzdata ucf unzip x11-common xdg-utils zip 0 upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 96.3 MB/96.3 MB of archives. After this operation, 236 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [730 B] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 tzdata all 2018i-1 [258 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6-2 [14.5 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.17-1 [65.5 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.17-1 [121 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.17-1 [368 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.17-1 [159 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 openssh-client amd64 1:7.9p1-6 [784 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:15 http://mirror-ubc.debian.org/debian sid/main amd64 openssl amd64 1.1.1a-1 [836 kB] Get:16 http://mirror-ubc.debian.org/debian sid/main amd64 ca-certificates all 20190110 [157 kB] Get:17 http://mirror-ubc.debian.org/debian sid/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:18 http://mirror-ubc.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.36-5 [292 kB] Get:19 http://mirror-ubc.debian.org/debian sid/main amd64 libfreetype6 amd64 2.9.1-3 [379 kB] Get:20 http://mirror-ubc.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:21 http://mirror-ubc.debian.org/debian sid/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:22 http://mirror-ubc.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:23 http://mirror-ubc.debian.org/debian sid/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:24 http://mirror-ubc.debian.org/debian sid/main amd64 libquadmath0 amd64 8.2.0-20 [133 kB] Get:25 http://mirror-ubc.debian.org/debian sid/main amd64 libgfortran5 amd64 8.2.0-20 [581 kB] Get:26 http://mirror-ubc.debian.org/debian sid/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:27 http://mirror-ubc.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:28 http://mirror-ubc.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:29 http://mirror-ubc.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:30 http://mirror-ubc.debian.org/debian sid/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:31 http://mirror-ubc.debian.org/debian sid/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:32 http://mirror-ubc.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:33 http://mirror-ubc.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:34 http://mirror-ubc.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:35 http://mirror-ubc.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:36 http://mirror-ubc.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:37 http://mirror-ubc.debian.org/debian sid/main amd64 libcairo2 amd64 1.16.0-2 [690 kB] Get:38 http://mirror-ubc.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:39 http://mirror-ubc.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:40 http://mirror-ubc.debian.org/debian sid/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:41 http://mirror-ubc.debian.org/debian sid/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3 [224 kB] Get:42 http://mirror-ubc.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.36.0-2 [84.9 kB] Get:43 http://mirror-ubc.debian.org/debian sid/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:44 http://mirror-ubc.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:45 http://mirror-ubc.debian.org/debian sid/main amd64 libssh2-1 amd64 1.8.0-2 [138 kB] Get:46 http://mirror-ubc.debian.org/debian sid/main amd64 libcurl4 amd64 7.64.0-1 [331 kB] Get:47 http://mirror-ubc.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:48 http://mirror-ubc.debian.org/debian sid/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:49 http://mirror-ubc.debian.org/debian sid/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:50 http://mirror-ubc.debian.org/debian sid/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:51 http://mirror-ubc.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:52 http://mirror-ubc.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:53 http://mirror-ubc.debian.org/debian sid/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:54 http://mirror-ubc.debian.org/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:55 http://mirror-ubc.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:56 http://mirror-ubc.debian.org/debian sid/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:57 http://mirror-ubc.debian.org/debian sid/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:58 http://mirror-ubc.debian.org/debian sid/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:59 http://mirror-ubc.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.5-3.1 [63.5 kB] Get:60 http://mirror-ubc.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:61 http://mirror-ubc.debian.org/debian sid/main amd64 libgomp1 amd64 8.2.0-20 [75.7 kB] Get:62 http://mirror-ubc.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:63 http://mirror-ubc.debian.org/debian sid/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:64 http://mirror-ubc.debian.org/debian sid/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:65 http://mirror-ubc.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:66 http://mirror-ubc.debian.org/debian sid/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:67 http://mirror-ubc.debian.org/debian sid/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:68 http://mirror-ubc.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:69 http://mirror-ubc.debian.org/debian sid/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:70 http://mirror-ubc.debian.org/debian sid/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:71 http://mirror-ubc.debian.org/debian sid/main amd64 lsb-base all 10.2018112800 [28.3 kB] Get:72 http://mirror-ubc.debian.org/debian sid/main amd64 x11-common all 1:7.7+19 [251 kB] Get:73 http://mirror-ubc.debian.org/debian sid/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:74 http://mirror-ubc.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:75 http://mirror-ubc.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:76 http://mirror-ubc.debian.org/debian sid/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:77 http://mirror-ubc.debian.org/debian sid/main amd64 libpmix2 amd64 3.1.2-2 [499 kB] Get:78 http://mirror-ubc.debian.org/debian sid/main amd64 libopenmpi3 amd64 3.1.3-10 [2187 kB] Get:79 http://mirror-ubc.debian.org/debian sid/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:80 http://mirror-ubc.debian.org/debian sid/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:81 http://mirror-ubc.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.42.4-6 [185 kB] Get:82 http://mirror-ubc.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.42.4-6 [67.9 kB] Get:83 http://mirror-ubc.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.42.4-6 [55.5 kB] Get:84 http://mirror-ubc.debian.org/debian sid/main amd64 libpaper1 amd64 1.1.26 [20.8 kB] Get:85 http://mirror-ubc.debian.org/debian sid/main amd64 libpaper-utils amd64 1.1.26 [17.9 kB] Get:86 http://mirror-ubc.debian.org/debian sid/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:87 http://mirror-ubc.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:88 http://mirror-ubc.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.9+dfsg-1 [1004 kB] Get:89 http://mirror-ubc.debian.org/debian sid/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:90 http://mirror-ubc.debian.org/debian sid/main amd64 libtiff5 amd64 4.0.10-4 [257 kB] Get:91 http://mirror-ubc.debian.org/debian sid/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:92 http://mirror-ubc.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:93 http://mirror-ubc.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.9-1 [768 kB] Get:94 http://mirror-ubc.debian.org/debian sid/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:95 http://mirror-ubc.debian.org/debian sid/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:96 http://mirror-ubc.debian.org/debian sid/main amd64 unzip amd64 6.0-22 [170 kB] Get:97 http://mirror-ubc.debian.org/debian sid/main amd64 xdg-utils all 1.1.3-1 [73.3 kB] Get:98 http://mirror-ubc.debian.org/debian sid/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:99 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get:100 http://mirror-ubc.debian.org/debian sid/main amd64 littler all 0.3.6-1 [13.6 kB] Get:101 http://mirror-ubc.debian.org/debian sid/main amd64 openmpi-common all 3.1.3-10 [165 kB] Get:102 http://mirror-ubc.debian.org/debian sid/main amd64 openmpi-bin amd64 3.1.3-10 [200 kB] Get:103 http://mirror-ubc.debian.org/debian sid/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get:104 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:105 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get:106 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get:107 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-colorspace amd64 1.4-0+dfsg-1 [1580 kB] Get:108 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.12.0+dfsg-1 [1359 kB] Get:109 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get:110 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get:111 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get:112 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get:113 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get:114 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get:115 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get:116 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get:117 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get:118 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:119 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get:120 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get:121 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get:122 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:123 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get:124 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-stringr all 1.3.1-2 [179 kB] Get:125 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get:126 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get:127 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get:128 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get:129 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-r6 all 2.3.0-1 [73.5 kB] Get:130 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get:131 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get:132 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get:133 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get:134 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get:135 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get:136 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get:137 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get:138 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get:139 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-gtools amd64 3.8.1-1 [321 kB] Get:140 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-rmpi amd64 0.6-9-1 [265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.3 MB in 3s (32.8 MB/s) Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4530 files and directories currently installed.) Preparing to unpack .../000-tzdata_2018i-1_all.deb ... Unpacking tzdata (2018i-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../003-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../004-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../005-libkeyutils1_1.6-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../006-libkrb5support0_1.17-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../007-libk5crypto3_1.17-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../008-libssl1.1_1.1.1a-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1a-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../009-libkrb5-3_1.17-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../010-libgssapi-krb5-2_1.17-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../011-openssh-client_1%3a7.9p1-6_amd64.deb ... Unpacking openssh-client (1:7.9p1-6) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../013-openssl_1.1.1a-1_amd64.deb ... Unpacking openssl (1.1.1a-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../014-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../015-libexpat1_2.2.6-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../016-libpng16-16_1.6.36-5_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-5) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../017-libfreetype6_2.9.1-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../018-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../019-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../020-libfontconfig1_2.13.1-2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../021-fontconfig_2.13.1-2_amd64.deb ... Unpacking fontconfig (2.13.1-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../022-libquadmath0_8.2.0-20_amd64.deb ... Unpacking libquadmath0:amd64 (8.2.0-20) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../023-libgfortran5_8.2.0-20_amd64.deb ... Unpacking libgfortran5:amd64 (8.2.0-20) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../024-libblas3_3.8.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.8.0-2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../025-libpixman-1-0_0.36.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.36.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../026-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../027-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../028-libxcb1_1.13.1-2_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../029-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../030-libx11-6_2%3a1.6.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.7-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../031-libxcb-render0_1.13.1-2_amd64.deb ... Unpacking libxcb-render0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../032-libxcb-shm0_1.13.1-2_amd64.deb ... 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Setting up unzip (6.0-22) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up zip (3.0-11+b1) ... Setting up libfreetype6:amd64 (2.9.1-3) ... Setting up lsb-base (10.2018112800) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up sensible-utils (0.0.12) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libssh2-1:amd64 (1.8.0-2) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up openmpi-common (3.1.3-10) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... Setting up libssl1.1:amd64 (1.1.1a-1) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up openssl (1.1.1a-1) ... Setting up libfribidi0:amd64 (1.0.5-3.1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libtcl8.6:amd64 (8.6.9+dfsg-1) ... Setting up libthai-data (0.1.28-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up libkeyutils1:amd64 (1.6-2) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.3-1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libgfortran5:amd64 (8.2.0-20) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libtiff5:amd64 (4.0.10-4) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libkrb5support0:amd64 (1.17-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libpaper1:amd64 (1.1.26) ... Creating config file /etc/papersize with new version Setting up libibverbs1:amd64 (22.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libk5crypto3:amd64 (1.17-1) ... Setting up libpaper-utils (1.1.26) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libpmix2:amd64 (3.1.2-2) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libkrb5-3:amd64 (1.17-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libfabric1 (1.6.2-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up openssh-client (1:7.9p1-6) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libcairo2:amd64 (1.16.0-2) ... Setting up libopenmpi3:amd64 (3.1.3-10) ... Setting up libtk8.6:amd64 (8.6.9-1) ... Setting up libcurl4:amd64 (7.64.0-1) ... Setting up openmpi-bin (3.1.3-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libpango-1.0-0:amd64 (1.42.4-6) ... Setting up mpi-default-bin (1.13) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-6) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-6) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-littler (0.3.6-1) ... Setting up littler (0.3.6-1) ... Setting up r-cran-fansi (0.4.0-1) ... Setting up r-cran-crayon (1.3.4-4) ... Setting up r-cran-gtable (0.2.0-3) ... Setting up r-cran-assertthat (0.2.0-2) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-cran-stringi (1.2.4-2) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-cran-labeling (0.3-3) ... Setting up r-cran-r6 (2.3.0-1) ... Setting up r-cran-colorspace (1.4-0+dfsg-1) ... Setting up r-cran-utf8 (1.1.4-1+b1) ... Setting up r-cran-mass (7.3-51.1-1) ... Setting up r-cran-gtools (3.8.1-1) ... Setting up r-cran-plyr (1.8.4-2) ... Setting up r-cran-rlang (0.3.1-2) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-cli (1.0.1-1) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-cran-data.table (1.12.0+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.2-1) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-viridislite (0.3.0-3) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-lazyeval (0.2.1-3) ... Setting up r-cran-nlme (3.1.137-1+b3) ... Setting up r-cran-rmpi (0.6-9-1) ... Setting up r-cran-stringr (1.3.1-2) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up r-cran-pillar (1.3.1-1) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-cran-tibble (2.0.1-1) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up r-cran-mgcv (1.8-27-1) ... Setting up r-cran-ggplot2 (3.1.0-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-7) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m47.0s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m47.0s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp46p6QO/./tmp/piuparts-depends-dummy.deb 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m47.1s DUMP: piuparts-depends-dummy install ok installed 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m47.1s DUMP: (Reading database ... 13622 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'clean'] 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'clean'] 0m47.1s DEBUG: Recording chroot state 0m48.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 0m49.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 0m50.3s DEBUG: No broken symlinks as far as we can find. 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-cache', 'policy'] 0m51.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-cache', 'policy'] 0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-cache', 'policy', 'r-cran-metamix'] 0m51.6s DUMP: r-cran-metamix: Installed: (none) Candidate: 0.3-1 Version table: 0.3-1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-cache', 'policy', 'r-cran-metamix'] 0m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', '-y', 'install', 'r-cran-metamix=0.3-1'] 0m52.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: r-cran-knitr The following NEW packages will be installed: r-cran-metamix 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 743 kB of archives. After this operation, 1799 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-metamix amd64 0.3-1 [743 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 743 kB in 0s (13.1 MB/s) Selecting previously unselected package r-cran-metamix. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13622 files and directories currently installed.) Preparing to unpack .../r-cran-metamix_0.3-1_amd64.deb ... Unpacking r-cran-metamix (0.3-1) ... Setting up r-cran-metamix (0.3-1) ... 0m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', '-y', 'install', 'r-cran-metamix=0.3-1'] 0m52.7s INFO: Running scripts post_install 0m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_install_exceptions'] 0m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_install_exceptions'] 0m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_install_log_alternatives'] 0m52.7s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=openmpi-bin: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --query mpirun-x86_64-linux-gnu LOG-ALTERNATIVES: dpkg=openmpi-bin: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --query mpi LOG-ALTERNATIVES: dpkg=libpsm-infinipath1: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 libpsm_infinipath.so.1 /usr/lib/libpsm1/libpsm_infinipath.so.1.16 40 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --quiet --remove rlogin /usr/bin/ssh LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --quiet --remove rcp /usr/bin/ssh LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --display rsh LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --quiet --install /usr/bin/rsh rsh /usr/bin/ssh 20 --slave /usr/share/man/man1/rsh.1.gz rsh.1.gz /usr/share/man/man1/ssh.1.gz LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --display rlogin LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --quiet --install /usr/bin/rlogin rlogin /usr/bin/slogin 20 --slave /usr/share/man/man1/rlogin.1.gz rlogin.1.gz /usr/share/man/man1/slogin.1.gz LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --display rcp LOG-ALTERNATIVES: dpkg=openssh-client: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --quiet --install /usr/bin/rcp rcp /usr/bin/scp 20 --slave /usr/share/man/man1/rcp.1.gz rcp.1.gz /usr/share/man/man1/scp.1.gz LOG-ALTERNATIVES: dpkg=openmpi-bin: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --install /usr/bin/mpirun mpirun /usr/bin/mpirun.openmpi 50 --slave /usr/share/man/man1/mpirun.1.gz mpirun.1.gz /usr/share/man/man1/mpirun.openmpi.1.gz --slave /usr/bin/mpiexec mpiexec /usr/bin/mpiexec.openmpi --slave /usr/share/man/man1/mpiexec.1.gz mpiexec.1.gz /usr/share/man/man1/mpiexec.openmpi.1.gz LOG-ALTERNATIVES: dpkg=openmpi-bin: piuparts=r-cran-metamix=0.3-1: /usr/bin/update-alternatives --install /usr/bin/mpicc mpi /usr/bin/mpicc.openmpi 50 --slave /usr/bin/mpic++ mpic++ /usr/bin/mpic++.openmpi --slave /usr/bin/mpicxx mpicxx /usr/bin/mpic++.openmpi --slave /usr/bin/mpiCC mpiCC /usr/bin/mpic++.openmpi --slave /usr/bin/mpif77 mpif77 /usr/bin/mpif77.openmpi --slave /usr/bin/mpif90 mpif90 /usr/bin/mpif90.openmpi --slave /usr/bin/mpifort mpifort /usr/bin/mpifort.openmpi --slave /usr/share/man/man1/mpicc.1.gz mpicc.1.gz /usr/share/man/man1/mpicc.openmpi.1.gz --slave /usr/share/man/man1/mpic++.1.gz mpic++.1.gz /usr/share/man/man1/mpic++.openmpi.1.gz --slave /usr/share/man/man1/mpicxx.1.gz mpicxx.1.gz /usr/share/man/man1/mpicxx.openmpi.1.gz --slave /usr/share/man/man1/mpiCC.1.gz mpiCC.1.gz /usr/share/man/man1/mpiCC.openmpi.1.gz --slave /usr/share/man/man1/mpif77.1.gz mpif77.1.gz /usr/share/man/man1/mpif77.openmpi.1.gz --slave /usr/share/man/man1/mpif90.1.gz mpif90.1.gz /usr/share/man/man1/mpif90.openmpi.1.gz --slave /usr/share/man/man1/mpifort.1.gz mpifort.1.gz /usr/share/man/man1/mpifort.openmpi.1.gz 0m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_install_log_alternatives'] 0m52.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 0m53.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 0m54.9s DEBUG: No broken symlinks as far as we can find. 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m54.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.0~rc3 install ok installed base-files base-files 10.1 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-2 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20190110 install ok installed coreutils coreutils 8.30-1 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.70 install ok installed debian-archive-keyring debian-archive-keyring 2018.1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.6-1 install ok installed dpkg dpkg 1.19.4 install ok installed e2fsprogs e2fsprogs 1.44.5-1 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190105-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-8-base:amd64 gcc-8-base 8.2.0-20 install ok installed gpgv gpgv 2.2.12-1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.0~rc3 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.8.4-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-2 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9 install ok installed libc-bin libc-bin 2.28-7 install ok installed libc6:amd64 libc6 2.28-7 install ok installed libcairo2:amd64 libcairo2 1.16.0-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1 install ok installed libcurl4:amd64 libcurl4 7.64.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.3 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.247 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libevent-2.1-6:amd64 libevent-2.1-6 2.1.8-stable-4 install ok installed libevent-core-2.1-6:amd64 libevent-core-2.1-6 2.1.8-stable-4 install ok installed libevent-pthreads-2.1-6:amd64 libevent-pthreads-2.1-6 2.1.8-stable-4 install ok installed libexpat1:amd64 libexpat1 2.2.6-1 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1 install ok installed libfabric1 libfabric1 1.6.2-3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1 install ok installed libgcc1:amd64 libgcc1 1:8.2.0-20 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgfortran5:amd64 libgfortran5 8.2.0-20 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.6-2 install ok installed libgomp1:amd64 libgomp1 8.2.0-20 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu63:amd64 libicu63 63.1-6 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3 install ok installed libldap-common libldap-common 2.4.47+dfsg-3 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-10 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.14-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-2 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-2 install ok installed libpam-runtime libpam-runtime 1.3.1-2 install ok installed libpam0g:amd64 libpam0g 1.3.1-2 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-6 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-6 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-6 install ok installed libpaper-utils libpaper-utils 1.1.26 install ok installed libpaper1:amd64 libpaper1 1.1.26 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-11 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpmix2:amd64 libpmix2 3.1.2-2 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-5 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libquadmath0:amd64 libquadmath0 8.2.0-20 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1a-1 install ok installed libstdc++6:amd64 libstdc++6 8.2.0-20 install ok installed libsystemd0:amd64 libsystemd0 240-5 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-1 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtiff5:amd64 libtiff5 4.0.10-4 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-1 install ok installed libudev1:amd64 libudev1 240-5 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1 install ok installed libx11-data libx11-data 2:1.6.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed littler littler 0.3.6-1 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2018112800 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed mpi-default-bin mpi-default-bin 1.13 install ok installed ncurses-base ncurses-base 6.1+20181013-2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed openmpi-bin openmpi-bin 3.1.3-10 install ok installed openmpi-common openmpi-common 3.1.3-10 install ok installed openssh-client openssh-client 1:7.9p1-6 install ok installed openssl openssl 1.1.1a-1 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-4 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-cli r-cran-cli 1.0.1-1 install ok installed r-cran-colorspace r-cran-colorspace 1.4-0+dfsg-1 install ok installed r-cran-crayon r-cran-crayon 1.3.4-4 install ok installed r-cran-data.table r-cran-data.table 1.12.0+dfsg-1 install ok installed r-cran-digest r-cran-digest 0.6.18-1 install ok installed r-cran-fansi r-cran-fansi 0.4.0-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.1.0-1 install ok installed r-cran-glue r-cran-glue 1.3.0-1 install ok installed r-cran-gtable r-cran-gtable 0.2.0-3 install ok installed r-cran-gtools r-cran-gtools 3.8.1-1 install ok installed r-cran-labeling r-cran-labeling 0.3-3 install ok installed r-cran-lattice r-cran-lattice 0.20-38-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.1-3 install ok installed r-cran-littler r-cran-littler 0.3.6-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-mass r-cran-mass 7.3-51.1-1 install ok installed r-cran-matrix r-cran-matrix 1.2-15-1 install ok installed r-cran-metamix r-cran-metamix 0.3-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-27-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-1 install ok installed r-cran-nlme r-cran-nlme 3.1.137-1+b3 install ok installed r-cran-pillar r-cran-pillar 1.3.1-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.2-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-plyr r-cran-plyr 1.8.4-2 install ok installed r-cran-r6 r-cran-r6 2.3.0-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-2 install ok installed r-cran-rcpp r-cran-rcpp 1.0.0-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.3-2 install ok installed r-cran-rlang r-cran-rlang 0.3.1-2 install ok installed r-cran-rmpi r-cran-rmpi 0.6-9-1 install ok installed r-cran-scales r-cran-scales 1.0.0-2 install ok installed r-cran-stringi r-cran-stringi 1.2.4-2 install ok installed r-cran-stringr r-cran-stringr 1.3.1-2 install ok installed r-cran-tibble r-cran-tibble 2.0.1-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-1+b1 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-3 install ok installed r-cran-withr r-cran-withr 2.1.2-3 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysvinit-utils sysvinit-utils 2.93-6 install ok installed tar tar 1.30+dfsg-5 install ok installed tzdata tzdata 2018i-1 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-22 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.3-1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m55.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp46p6QO', '-ac', '--ignore-obsolete'] 0m57.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp46p6QO', '-ac', '--ignore-obsolete'] 0m57.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m57.4s DUMP: 0.15.1 0m57.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m57.4s INFO: Running adequate version 0.15.1 now. 0m57.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'r-cran-metamix'] 0m57.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'r-cran-metamix'] 0m57.5s INFO: Running scripts pre_remove 0m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_exceptions'] 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/pre_remove_exceptions'] 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'lsb-base', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libtiff5:amd64', 'libdatrie1:amd64', 'fontconfig', 'libxcb1:amd64', 'r-cran-rcpp', 'unzip', 'libpciaccess0:amd64', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'liblapack3:amd64', 'libpsm-infinipath1', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libevent-2.1-6:amd64', 'libbsd0:amd64', 'libedit2:amd64', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libpsm2-2', 'libthai0:amd64', 'openmpi-bin', 'libgraphite2-3:amd64', 'r-cran-rcolorbrewer', 'r-cran-gtools', 'openmpi-common', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libnl-route-3-200:amd64', 'r-cran-pkgconfig', 'r-cran-mass', 'libfribidi0:amd64', 'libhwloc5:amd64', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'r-cran-rmpi', 'libpsl5:amd64', 'libxext6:amd64', 'r-cran-plyr', 'xdg-utils', 'libibverbs1:amd64', 'libpng16-16:amd64', 'libicu63:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libltdl7:amd64', 'libnghttp2-14:amd64', 'r-cran-glue', 'r-cran-fansi', 'librdmacm1:amd64', 'libxft2:amd64', 'openssl', 'r-cran-r6', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libpangoft2-1.0-0:amd64', 'libfreetype6:amd64', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'libevent-core-2.1-6:amd64', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'ucf', 'libfontconfig1:amd64', 'ocl-icd-libopencl1:amd64', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'zip', 'r-cran-mgcv', 'libxml2:amd64', 'tzdata', 'libnl-3-200:amd64', 'libxss1:amd64', 'x11-common', 'libpaper-utils', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libjbig0:amd64', 'libevent-pthreads-2.1-6:amd64', 'libpmix2:amd64', 'libice6:amd64', 'libxt6:amd64', 'libexpat1:amd64', 'libjpeg62-turbo:amd64', 'libxcb-render0:amd64', 'mpi-default-bin', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'libopenmpi3:amd64', 'r-cran-utf8', 'libblas3:amd64', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'libfabric1', 'libgfortran5:amd64', 'r-cran-crayon', 'fontconfig-config', 'libpangocairo-1.0-0:amd64', 'r-cran-data.table', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libkrb5-3:amd64', 'libsasl2-modules-db:amd64', 'libhwloc-plugins:amd64', 'libxau6:amd64', 'libxcb-shm0:amd64', 'libpaper1:amd64', 'libxrender1:amd64', 'openssh-client', 'r-cran-ggplot2', 'r-cran-magrittr', 'r-cran-labeling', 'libldap-common', 'libsasl2-2:amd64', 'libkrb5support0:amd64', 'libnuma1:amd64', 'libwebp6:amd64', 'r-cran-lattice', 'r-cran-metamix'] 1m2.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core libblas3 libbsd0 libcairo2 libcurl4 libdatrie1 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwloc-plugins libhwloc5 libibverbs1 libice6 libicu63 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libltdl7 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpixman-1-0 libpmix2 libpng16-16 libpsl5 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 littler lsb-base mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssl r-base-core r-cran-assertthat r-cran-cli r-cran-colorspace r-cran-crayon r-cran-data.table r-cran-digest r-cran-fansi r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-metamix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-rmpi r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-viridislite r-cran-withr readline-common sensible-utils tzdata ucf unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 140 to remove and 0 not upgraded. After this operation, 238 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13683 files and directories currently installed.) Removing r-cran-metamix (0.3-1) ... Removing r-cran-rmpi (0.6-9-1) ... Removing r-cran-ggplot2 (3.1.0-1) ... Removing r-cran-mgcv (1.8-27-1) ... Removing r-cran-matrix (1.2-15-1) ... Removing r-cran-scales (1.0.0-2) ... Removing r-cran-rcolorbrewer (1.1-2-2) ... Removing littler (0.3.6-1) ... Removing mpi-default-bin (1.13) ... Removing openmpi-bin (3.1.3-10) ... Removing openssh-client (1:7.9p1-6) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libopenmpi3:amd64 (3.1.3-10) ... Removing libpmix2:amd64 (3.1.2-2) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing libfabric1 (1.6.2-3) ... Removing r-cran-nlme (3.1.137-1+b3) ... Removing r-cran-data.table (1.12.0+dfsg-1) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing openmpi-common (3.1.3-10) ... Removing r-cran-tibble (2.0.1-1) ... Removing r-cran-pillar (1.3.1-1) ... Removing r-cran-cli (1.0.1-1) ... Removing r-cran-assertthat (0.2.0-2) ... Removing r-cran-munsell (0.5.0-1) ... Removing r-cran-colorspace (1.4-0+dfsg-1) ... Removing r-cran-crayon (1.3.4-4) ... Removing r-cran-digest (0.6.18-1) ... Removing r-cran-fansi (0.4.0-1) ... Removing r-cran-reshape2 (1.4.3-2) ... Removing r-cran-stringr (1.3.1-2) ... Removing r-cran-glue (1.3.0-1) ... Removing r-cran-gtable (0.2.0-3) ... Removing r-cran-gtools (3.8.1-1) ... Removing r-cran-labeling (0.3-3) ... Removing r-cran-lattice (0.20-38-1) ... Removing r-cran-lazyeval (0.2.1-3) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-mass (7.3-51.1-1) ... Removing r-cran-pkgconfig (2.0.2-1) ... Removing r-cran-plyr (1.8.4-2) ... Removing r-cran-r6 (2.3.0-1) ... Removing r-cran-rlang (0.3.1-2) ... Removing r-cran-stringi (1.2.4-2) ... Removing r-cran-utf8 (1.1.4-1+b1) ... Removing r-cran-viridislite (0.3.0-3) ... Removing r-cran-withr (2.1.2-3) ... Removing r-cran-rcpp (1.0.0-1) ... Removing r-cran-littler (0.3.6-1) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing r-base-core (3.5.2-1) ... Removing ca-certificates (20190110) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.42.4-6) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-6) ... Removing libpango-1.0-0:amd64 (1.42.4-6) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-1) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-2) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libcurl4:amd64 (7.64.0-1) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libexpat1:amd64 (2.2.6-1) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfreetype6:amd64 (2.9.1-3) ... Removing libfribidi0:amd64 (1.0.5-3.1) ... Removing libgfortran5:amd64 (8.2.0-20) ... Removing libglib2.0-0:amd64 (2.58.3-1) ... Removing libgomp1:amd64 (8.2.0-20) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-1) ... Removing libicu63:amd64 (63.1-6) ... Removing libtiff5:amd64 (4.0.10-4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Removing libkrb5-3:amd64 (1.17-1) ... Removing libk5crypto3:amd64 (1.17-1) ... Removing libkrb5support0:amd64 (1.17-1) ... Removing libkeyutils1:amd64 (1.6-2) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... Removing libldap-common (2.4.47+dfsg-3) ... Removing libnghttp2-14:amd64 (1.36.0-2) ... Removing libpaper-utils (1.1.26) ... Removing libpaper1:amd64 (1.1.26) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpng16-16:amd64 (1.6.36-5) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libquadmath0:amd64 (8.2.0-20) ... Removing libreadline7:amd64 (7.0-5) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Removing libssh2-1:amd64 (1.8.0-2) ... Removing openssl (1.1.1a-1) ... Removing libssl1.1:amd64 (1.1.1a-1) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-1) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2018112800) ... Removing readline-common (7.0-5) ... Removing ucf (3.0038+nmu1) ... Removing sensible-utils (0.0.12) ... Removing tzdata (2018i-1) ... Removing unzip (6.0-22) ... Removing xdg-utils (1.1.3-1) ... Removing zip (3.0-11+b1) ... Removing libx11-6:amd64 (2:1.6.7-1) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-1) ... Removing libx11-data (2:1.6.7-1) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.28-7) ... 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'remove', 'libgssapi-krb5-2:amd64', 'lsb-base', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libtiff5:amd64', 'libdatrie1:amd64', 'fontconfig', 'libxcb1:amd64', 'r-cran-rcpp', 'unzip', 'libpciaccess0:amd64', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'liblapack3:amd64', 'libpsm-infinipath1', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libevent-2.1-6:amd64', 'libbsd0:amd64', 'libedit2:amd64', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libpsm2-2', 'libthai0:amd64', 'openmpi-bin', 'libgraphite2-3:amd64', 'r-cran-rcolorbrewer', 'r-cran-gtools', 'openmpi-common', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libnl-route-3-200:amd64', 'r-cran-pkgconfig', 'r-cran-mass', 'libfribidi0:amd64', 'libhwloc5:amd64', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'r-cran-rmpi', 'libpsl5:amd64', 'libxext6:amd64', 'r-cran-plyr', 'xdg-utils', 'libibverbs1:amd64', 'libpng16-16:amd64', 'libicu63:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libltdl7:amd64', 'libnghttp2-14:amd64', 'r-cran-glue', 'r-cran-fansi', 'librdmacm1:amd64', 'libxft2:amd64', 'openssl', 'r-cran-r6', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libpangoft2-1.0-0:amd64', 'libfreetype6:amd64', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'libevent-core-2.1-6:amd64', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'ucf', 'libfontconfig1:amd64', 'ocl-icd-libopencl1:amd64', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'zip', 'r-cran-mgcv', 'libxml2:amd64', 'tzdata', 'libnl-3-200:amd64', 'libxss1:amd64', 'x11-common', 'libpaper-utils', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libjbig0:amd64', 'libevent-pthreads-2.1-6:amd64', 'libpmix2:amd64', 'libice6:amd64', 'libxt6:amd64', 'libexpat1:amd64', 'libjpeg62-turbo:amd64', 'libxcb-render0:amd64', 'mpi-default-bin', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'libopenmpi3:amd64', 'r-cran-utf8', 'libblas3:amd64', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'libfabric1', 'libgfortran5:amd64', 'r-cran-crayon', 'fontconfig-config', 'libpangocairo-1.0-0:amd64', 'r-cran-data.table', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libkrb5-3:amd64', 'libsasl2-modules-db:amd64', 'libhwloc-plugins:amd64', 'libxau6:amd64', 'libxcb-shm0:amd64', 'libpaper1:amd64', 'libxrender1:amd64', 'openssh-client', 'r-cran-ggplot2', 'r-cran-magrittr', 'r-cran-labeling', 'libldap-common', 'libsasl2-2:amd64', 'libkrb5support0:amd64', 'libnuma1:amd64', 'libwebp6:amd64', 'r-cran-lattice', 'r-cran-metamix'] 1m2.2s INFO: Running scripts post_remove 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_remove_exceptions'] 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_remove_exceptions'] 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'lsb-base', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libtiff5:amd64', 'libdatrie1:amd64', 'fontconfig', 'libxcb1:amd64', 'r-cran-rcpp', 'unzip', 'libpciaccess0:amd64', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'liblapack3:amd64', 'libpsm-infinipath1', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libevent-2.1-6:amd64', 'libbsd0:amd64', 'libedit2:amd64', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libpsm2-2', 'libthai0:amd64', 'openmpi-bin', 'libgraphite2-3:amd64', 'r-cran-rcolorbrewer', 'r-cran-gtools', 'openmpi-common', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libnl-route-3-200:amd64', 'r-cran-pkgconfig', 'r-cran-mass', 'libfribidi0:amd64', 'libhwloc5:amd64', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'r-cran-rmpi', 'libpsl5:amd64', 'libxext6:amd64', 'r-cran-plyr', 'xdg-utils', 'libibverbs1:amd64', 'libpng16-16:amd64', 'libicu63:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libltdl7:amd64', 'libnghttp2-14:amd64', 'r-cran-glue', 'r-cran-fansi', 'librdmacm1:amd64', 'libxft2:amd64', 'openssl', 'r-cran-r6', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libpangoft2-1.0-0:amd64', 'libfreetype6:amd64', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'libevent-core-2.1-6:amd64', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'ucf', 'libfontconfig1:amd64', 'ocl-icd-libopencl1:amd64', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'zip', 'r-cran-mgcv', 'libxml2:amd64', 'tzdata', 'libnl-3-200:amd64', 'libxss1:amd64', 'x11-common', 'libpaper-utils', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libjbig0:amd64', 'libevent-pthreads-2.1-6:amd64', 'libpmix2:amd64', 'libice6:amd64', 'libxt6:amd64', 'libexpat1:amd64', 'libjpeg62-turbo:amd64', 'libxcb-render0:amd64', 'mpi-default-bin', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'libopenmpi3:amd64', 'r-cran-utf8', 'libblas3:amd64', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'libfabric1', 'libgfortran5:amd64', 'r-cran-crayon', 'fontconfig-config', 'libpangocairo-1.0-0:amd64', 'r-cran-data.table', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libkrb5-3:amd64', 'libsasl2-modules-db:amd64', 'libhwloc-plugins:amd64', 'libxau6:amd64', 'libxcb-shm0:amd64', 'libpaper1:amd64', 'libxrender1:amd64', 'openssh-client', 'r-cran-ggplot2', 'r-cran-magrittr', 'r-cran-labeling', 'libldap-common', 'libsasl2-2:amd64', 'libkrb5support0:amd64', 'libnuma1:amd64', 'libwebp6:amd64', 'r-cran-lattice'] 1m3.2s DUMP: (Reading database ... 4589 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.17-1) ... dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed Purging configuration files for fontconfig (2.13.1-2) ... dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed Purging configuration files for unzip (6.0-22) ... dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1a-1) ... dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6) ... Purging configuration files for ca-certificates (20190110) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for r-base-core (3.5.2-1) ... Purging configuration files for libglib2.0-0:amd64 (2.58.3-1) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove libevent-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed Purging configuration files for openmpi-bin (3.1.3-10) ... dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-gtools which isn't installed dpkg: warning: ignoring request to remove openmpi-common which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-rmpi which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed Purging configuration files for openssl (1.1.1a-1) ... dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-6 which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed Purging configuration files for tzdata (2018i-1) ... Purging configuration files for libnl-3-200:amd64 (3.4.0-1) ... dpkg: warning: ignoring request to remove libxss1 which isn't installed Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove libpaper-utils which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed Purging configuration files for fontconfig-config (2.13.1-2) ... dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed Purging configuration files for libpaper1:amd64 (1.1.26) ... dpkg: warning: ignoring request to remove libxrender1 which isn't installed Purging configuration files for openssh-client (1:7.9p1-6) ... dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3) ... dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', 'libgssapi-krb5-2:amd64', 'lsb-base', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libtiff5:amd64', 'libdatrie1:amd64', 'fontconfig', 'libxcb1:amd64', 'r-cran-rcpp', 'unzip', 'libpciaccess0:amd64', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'liblapack3:amd64', 'libpsm-infinipath1', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libevent-2.1-6:amd64', 'libbsd0:amd64', 'libedit2:amd64', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libpsm2-2', 'libthai0:amd64', 'openmpi-bin', 'libgraphite2-3:amd64', 'r-cran-rcolorbrewer', 'r-cran-gtools', 'openmpi-common', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libnl-route-3-200:amd64', 'r-cran-pkgconfig', 'r-cran-mass', 'libfribidi0:amd64', 'libhwloc5:amd64', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'r-cran-rmpi', 'libpsl5:amd64', 'libxext6:amd64', 'r-cran-plyr', 'xdg-utils', 'libibverbs1:amd64', 'libpng16-16:amd64', 'libicu63:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libltdl7:amd64', 'libnghttp2-14:amd64', 'r-cran-glue', 'r-cran-fansi', 'librdmacm1:amd64', 'libxft2:amd64', 'openssl', 'r-cran-r6', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libpangoft2-1.0-0:amd64', 'libfreetype6:amd64', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'libevent-core-2.1-6:amd64', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'ucf', 'libfontconfig1:amd64', 'ocl-icd-libopencl1:amd64', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'zip', 'r-cran-mgcv', 'libxml2:amd64', 'tzdata', 'libnl-3-200:amd64', 'libxss1:amd64', 'x11-common', 'libpaper-utils', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libjbig0:amd64', 'libevent-pthreads-2.1-6:amd64', 'libpmix2:amd64', 'libice6:amd64', 'libxt6:amd64', 'libexpat1:amd64', 'libjpeg62-turbo:amd64', 'libxcb-render0:amd64', 'mpi-default-bin', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'libopenmpi3:amd64', 'r-cran-utf8', 'libblas3:amd64', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'libfabric1', 'libgfortran5:amd64', 'r-cran-crayon', 'fontconfig-config', 'libpangocairo-1.0-0:amd64', 'r-cran-data.table', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libkrb5-3:amd64', 'libsasl2-modules-db:amd64', 'libhwloc-plugins:amd64', 'libxau6:amd64', 'libxcb-shm0:amd64', 'libpaper1:amd64', 'libxrender1:amd64', 'openssh-client', 'r-cran-ggplot2', 'r-cran-magrittr', 'r-cran-labeling', 'libldap-common', 'libsasl2-2:amd64', 'libkrb5support0:amd64', 'libnuma1:amd64', 'libwebp6:amd64', 'r-cran-lattice'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', 'r-cran-metamix'] 1m3.2s DUMP: dpkg: warning: ignoring request to remove r-cran-metamix which isn't installed 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', 'r-cran-metamix'] 1m3.2s INFO: Running scripts post_purge 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_purge_exceptions'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_purge_exceptions'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', '--pending'] 1m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--purge', '--pending'] 1m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--remove', '--pending'] 1m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg', '--remove', '--pending'] 1m3.3s INFO: Running scripts post_test 1m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_test_exceptions'] 1m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'tmp/scripts/post_test_exceptions'] 1m3.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 1m3.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 1m4.0s DEBUG: No broken symlinks as far as we can find. 1m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-divert', '--list'] 1m4.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'dpkg-divert', '--list'] 1m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'clean'] 1m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp46p6QO', 'apt-get', 'clean'] 1m4.0s DEBUG: Recording chroot state 1m5.2s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned These files seem to have been left by dependencies rather than by packages being explicitly tested. 1m5.3s INFO: PASS: Installation and purging test. 1m5.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/shm'] 1m5.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/shm'] 1m5.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/console'] 1m5.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/console'] 1m5.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/ptmx'] 1m5.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/ptmx'] 1m5.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/pts'] 1m5.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/dev/pts'] 1m5.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/proc'] 1m5.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp46p6QO/proc'] 1m5.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 1m6.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp46p6QO'] 1m6.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp46p6QO 1m6.0s INFO: PASS: All tests. 1m6.0s INFO: piuparts run ends. ret=0 End: 2019-02-13 09:48:19 UTC