Start: 2023-10-26 21:47:49 GMT Package: gromacs Version: 2023.3-1 Installed-Size: 448 Maintainer: Debichem Team Architecture: amd64 Replaces: gromacs-mpi (<< 2022~), gromacs-mpich (<< 2021.1-2), gromacs-openmpi (<< 2021.1-2) Depends: gromacs-data (= 2023.3-1), sse4.2-support, libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgromacs8 (>= 2023.3), libopenmpi3 (>= 4.1.6), libstdc++6 (>= 11) Recommends: cpp, mpi-default-bin Suggests: pymol Breaks: gromacs-mpi (<< 2022~), gromacs-mpich (<< 2021.1-2), gromacs-openmpi (<< 2021.1-2) Description: Molecular dynamics simulator, with building and analysis tools Homepage: https://www.gromacs.org/ Description-md5: b2bae23de6e584a47799dd4899a2c30a Tag: field::biology, field::biology:structural, field::chemistry, implemented-in::c, interface::commandline, interface::graphical, interface::x11, role::program, uitoolkit::xlib, x11::application Section: science Priority: optional Filename: pool/main/g/gromacs/gromacs_2023.3-1_amd64.deb Size: 60016 MD5sum: 99d269c4cfc893926c33dcd302adc663 SHA256: b40229e0a2daac37f2d4429561f03110ef951adaa546abcbe14d582756a39e61 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --merged-usr -i /usr/lib32/ -i /usr/libx32/ --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt gromacs=2023.3-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --merged-usr -i /usr/lib32/ -i /usr/libx32/ --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt gromacs=2023.3-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-26-amd64 #1 SMP Debian 5.10.197-1 (2023-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpguud4ap5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpguud4ap5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpguud4ap5/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'update'] 0m5.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9557 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7054 kB] Fetched 16.8 MB in 2s (6798 kB/s) Reading package lists... 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'update'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', '-yf', 'dist-upgrade'] 0m7.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-13-base libgcc-s1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libstdc++6 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1306 kB of archives. After this operation, 1024 B disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1 [65.5 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1 [49.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1 [264 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:5 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-6 [40.5 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 13.2.0-6 [694 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 13.2.0-6 [57.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1306 kB in 0s (19.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5202 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-9.1_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-9.1) over (1.5.2-7) ... Setting up libpam0g:amd64 (1.5.2-9.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5201 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-9.1_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-9.1) over (1.5.2-7) ... Setting up libpam-modules-bin (1.5.2-9.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-9.1_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-9.1) over (1.5.2-7) ... Setting up libpam-modules:amd64 (1.5.2-9.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5199 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-9.1_all.deb ... Unpacking libpam-runtime (1.5.2-9.1) over (1.5.2-7) ... Setting up libpam-runtime (1.5.2-9.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5198 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.2.0-6_amd64.deb ... Unpacking gcc-13-base:amd64 (13.2.0-6) over (13.2.0-5) ... Setting up gcc-13-base:amd64 (13.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5198 files and directories currently installed.) Preparing to unpack .../libstdc++6_13.2.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (13.2.0-6) over (13.2.0-5) ... Setting up libstdc++6:amd64 (13.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5198 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-6_amd64.deb ... Unpacking libgcc-s1:amd64 (13.2.0-6) over (13.2.0-5) ... Setting up libgcc-s1:amd64 (13.2.0-6) ... Processing triggers for libc-bin (2.37-12) ... 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', '-yf', 'dist-upgrade'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s DUMP: 77bad84af243de8024c3d45a5f1890d8 - 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s INFO: Running scripts post_setup 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_minimize'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_minimize'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_zz_backports'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_setup_zz_backports'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'clean'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'clean'] 0m8.7s DEBUG: Recording chroot state 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DUMP: install ok installed apt apt 2.7.6 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.2 install ok installed bash bash 5.2.15-2+b6 install ok installed bsdutils bsdutils 1:2.39.2-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.14 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.0 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-6 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.6 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libblkid1:amd64 libblkid1 2.39.2-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-12 install ok installed libc6:amd64 libc6 2.37-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-2 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.4-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.2-4 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-4 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 254.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20231016-1 install ok installed libudev1:amd64 libudev1 254.5-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20230808-1 install ok installed mount mount 2.39.2-4 install ok installed ncurses-base ncurses-base 6.4+20231016-1 install ok installed ncurses-bin ncurses-bin 6.4+20231016-1 install ok installed passwd passwd 1:4.13+dfsg1-3 install ok installed perl-base perl-base 5.36.0-9 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.08-3 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-10 install ok installed usr-is-merged usr-is-merged 37 install ok installed util-linux util-linux 2.39.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-3 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-divert', '--list'] 0m9.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-divert', '--list'] 0m9.3s INFO: Running scripts is_testable 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s INFO: apt-cache does not know about any of the requested packages 0m9.3s INFO: Running scripts pre_test 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_test_root_password'] 0m9.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_test_root_password'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m10.3s DEBUG: No broken symlinks as far as we can find. 0m10.3s INFO: Running scripts pre_install 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m10.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m11.3s DEBUG: No broken symlinks as far as we can find. 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-cache', 'policy'] 0m12.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-cache', 'policy'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-cache', 'policy', 'gromacs'] 0m12.4s DUMP: gromacs: Installed: (none) Candidate: 2023.3-1 Version table: 2023.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-cache', 'policy', 'gromacs'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', '-y', 'install', 'gromacs=2023.3-1'] 0m23.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser fonts-mathjax gromacs-data ibverbs-providers isa-support libatomic1 libblas3 libbsd0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libgromacs8 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjs-mathjax liblapack3 libmunge2 libmuparser2v5 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 sse4.2-support Suggested packages: liblocale-gettext-perl perl cron quota pymol libfftw3-bin libfftw3-dev libhwloc-contrib-plugins fonts-mathjax-extras fonts-stix libjs-mathjax-doc pciutils opencl-icd Recommended packages: cpp mpi-default-bin The following NEW packages will be installed: adduser fonts-mathjax gromacs gromacs-data ibverbs-providers isa-support libatomic1 libblas3 libbsd0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libgromacs8 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjs-mathjax liblapack3 libmunge2 libmuparser2v5 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 sse4.2-support 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 505 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 isa-support amd64 20 [15.2 kB] Get:2 http://deb.debian.org/debian sid/main amd64 sse4.2-support amd64 20 [3408 B] Get:3 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:4 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:6 http://deb.debian.org/debian sid/main amd64 gromacs-data all 2023.3-1 [42.7 MB] Get:7 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 13.2.0-6 [131 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.10-1 [776 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libfftw3-single3 amd64 3.3.10-1 [806 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.9.3-1 [155 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 13.2.0-6 [804 kB] Get:13 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libmuparser2v5 amd64 2.3.3-0.1 [144 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 48.0-1 [61.2 kB] Get:20 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 48.0-1 [340 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 13.2.0-6 [9288 B] Get:22 http://deb.debian.org/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:25 http://deb.debian.org/debian sid/main amd64 librdmacm1 amd64 48.0-1 [69.5 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libmunge2 amd64 0.5.15-3 [19.7 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.7-4 [115 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 525.125.06-1 [13.5 kB] Get:39 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [39.7 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.9.3-1 [17.6 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libpmix2 amd64 5.0.1-2 [643 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.15.0-1 [940 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libopenmpi3 amd64 4.1.6-1 [2427 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libgromacs8 amd64 2023.3-1 [27.6 MB] Get:45 http://deb.debian.org/debian sid/main amd64 gromacs amd64 2023.3-1 [60.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 1s (163 MB/s) Selecting previously unselected package isa-support:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../isa-support_20_amd64.deb ... Unpacking isa-support:amd64 (20) ... Setting up isa-support:amd64 (20) ... Selecting previously unselected package sse4.2-support. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5232 files and directories currently installed.) Preparing to unpack .../sse4.2-support_20_amd64.deb ... Unpacking sse4.2-support (20) ... Selecting previously unselected package adduser. Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package fonts-mathjax. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5305 files and directories currently installed.) Preparing to unpack .../00-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../01-libjs-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking libjs-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package gromacs-data. Preparing to unpack .../02-gromacs-data_2023.3-1_all.deb ... Unpacking gromacs-data (2023.3-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../03-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../04-libgomp1_13.2.0-6_amd64.deb ... Unpacking libgomp1:amd64 (13.2.0-6) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../05-libfftw3-double3_3.3.10-1_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.10-1) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../06-libfftw3-single3_3.3.10-1_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.10-1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../07-libhwloc15_2.9.3-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.9.3-1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../08-libgfortran5_13.2.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (13.2.0-6) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../09-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package libmuparser2v5:amd64. Preparing to unpack .../10-libmuparser2v5_2.3.3-0.1_amd64.deb ... Unpacking libmuparser2v5:amd64 (2.3.3-0.1) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../11-libevent-core-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../12-libevent-pthreads-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../13-libnl-3-200_3.7.0-0.2+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-0.2+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../14-libnl-route-3-200_3.7.0-0.2+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../15-libibverbs1_48.0-1_amd64.deb ... Unpacking libibverbs1:amd64 (48.0-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../16-ibverbs-providers_48.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (48.0-1) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../17-libatomic1_13.2.0-6_amd64.deb ... Unpacking libatomic1:amd64 (13.2.0-6) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../18-libpsm-infinipath1_3.3+20.604758e7-6.2_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../19-libnuma1_2.0.16-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.16-1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../20-libpsm2-2_11.2.185-2_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../21-librdmacm1_48.0-1_amd64.deb ... Unpacking librdmacm1:amd64 (48.0-1) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../22-libfabric1_1.17.0-3_amd64.deb ... Unpacking libfabric1:amd64 (1.17.0-3) ... Selecting previously unselected package libmunge2:amd64. Preparing to unpack .../23-libmunge2_0.5.15-3_amd64.deb ... Unpacking libmunge2:amd64 (0.5.15-3) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../24-libpciaccess0_0.17-2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../25-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../26-libbsd0_0.11.7-4_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-4) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../27-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../28-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../29-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../30-libx11-6_2%3a1.8.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../31-libicu72_72.1-4_amd64.deb ... Unpacking libicu72:amd64 (72.1-4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../32-libxml2_2.9.14+dfsg-1.3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../33-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../34-libxnvctrl0_525.125.06-1_amd64.deb ... Unpacking libxnvctrl0:amd64 (525.125.06-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../35-ocl-icd-libopencl1_2.3.2-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../36-libhwloc-plugins_2.9.3-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.9.3-1) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../37-libpmix2_5.0.1-2_amd64.deb ... Unpacking libpmix2:amd64 (5.0.1-2) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../38-libucx0_1.15.0-1_amd64.deb ... Unpacking libucx0:amd64 (1.15.0-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../39-libopenmpi3_4.1.6-1_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.6-1) ... Selecting previously unselected package libgromacs8:amd64. Preparing to unpack .../40-libgromacs8_2023.3-1_amd64.deb ... Unpacking libgromacs8:amd64 (2023.3-1) ... Selecting previously unselected package gromacs. Preparing to unpack .../41-gromacs_2023.3-1_amd64.deb ... Unpacking gromacs (2023.3-1) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libicu72:amd64 (72.1-4) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libgomp1:amd64 (13.2.0-6) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libmunge2:amd64 (0.5.15-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libhwloc15:amd64 (2.9.3-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (13.2.0-6) ... Setting up libfftw3-double3:amd64 (3.3.10-1) ... Setting up libgfortran5:amd64 (13.2.0-6) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1) ... Setting up sse4.2-support (20) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libmuparser2v5:amd64 (2.3.3-0.1) ... Setting up libbsd0:amd64 (0.11.7-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up gromacs-data (2023.3-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libfftw3-single3:amd64 (3.3.10-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libibverbs1:amd64 (48.0-1) ... Setting up ibverbs-providers:amd64 (48.0-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libxnvctrl0:amd64 (525.125.06-1) ... Setting up librdmacm1:amd64 (48.0-1) ... Setting up libucx0:amd64 (1.15.0-1) ... Setting up libhwloc-plugins:amd64 (2.9.3-1) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpmix2:amd64 (5.0.1-2) ... Setting up libopenmpi3:amd64 (4.1.6-1) ... Setting up libgromacs8:amd64 (2023.3-1) ... Setting up gromacs (2023.3-1) ... Processing triggers for libc-bin (2.37-12) ... 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', '-y', 'install', 'gromacs=2023.3-1'] 0m23.9s INFO: Running scripts post_install 0m23.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_install_exceptions'] 0m23.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_install_exceptions'] 0m24.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m25.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m29.3s DEBUG: No broken symlinks as far as we can find. 0m29.4s INFO: /bin converted to /usr/bin by /usr merge 0m29.4s INFO: /lib converted to /usr/lib by /usr merge 0m29.4s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m29.4s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m29.4s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m29.4s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m29.4s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m29.4s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m29.4s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m29.4s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m29.4s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m29.4s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m29.4s INFO: /sbin converted to /usr/sbin by /usr merge 0m32.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', '-ac', '--ignore-obsolete'] 0m35.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', '-ac', '--ignore-obsolete'] 0m35.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m35.8s DUMP: 0.15.6 0m35.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m35.8s INFO: Running adequate version 0.15.6 now. 0m35.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'gromacs'] 0m35.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'gromacs'] 0m35.9s INFO: Running scripts pre_remove 0m35.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_exceptions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/pre_remove_exceptions'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m40.3s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.6 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.2 install ok installed bash bash 5.2.15-2+b6 install ok installed bsdutils bsdutils 1:2.39.2-4 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.14 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.0 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-6 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gromacs gromacs 2023.3-1 install ok installed gromacs-data gromacs-data 2023.3-1 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed ibverbs-providers:amd64 ibverbs-providers 48.0-1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed isa-support:amd64 isa-support 20 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.6 install ok installed libatomic1:amd64 libatomic1 13.2.0-6 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.39.2-4 install ok installed libbsd0:amd64 libbsd0 0.11.7-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-12 install ok installed libc6:amd64 libc6 2.37-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-8 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-8 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libfabric1:amd64 libfabric1 1.17.0-3 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.10-1 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.10-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libgfortran5:amd64 libgfortran5 13.2.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgomp1:amd64 libgomp1 13.2.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-2 install ok installed libgromacs8:amd64 libgromacs8 2023.3-1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.9.3-1 install ok installed libhwloc15:amd64 libhwloc15 2.9.3-1 install ok installed libibverbs1:amd64 libibverbs1 48.0-1 install ok installed libicu72:amd64 libicu72 72.1-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.4-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.2-4 install ok installed libmunge2:amd64 libmunge2 0.5.15-3 install ok installed libmuparser2v5:amd64 libmuparser2v5 2.3.3-0.1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.2+b1 install ok installed libnuma1:amd64 libnuma1 2.0.16-1 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.6-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpmix2:amd64 libpmix2 5.0.1-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.2 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed librdmacm1:amd64 librdmacm1 48.0-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-4 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 254.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20231016-1 install ok installed libucx0:amd64 libucx0 1.15.0-1 install ok installed libudev1:amd64 libudev1 254.5-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-4 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3 install ok installed libxnvctrl0:amd64 libxnvctrl0 525.125.06-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20230808-1 install ok installed mount mount 2.39.2-4 install ok installed ncurses-base ncurses-base 6.4+20231016-1 install ok installed ncurses-bin ncurses-bin 6.4+20231016-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1 install ok installed passwd passwd 1:4.13+dfsg1-3 install ok installed perl-base perl-base 5.36.0-9 install ok installed sed sed 4.9-1 install ok installed sse4.2-support sse4.2-support 20 install ok installed sysvinit-utils sysvinit-utils 3.08-3 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-10 install ok installed usr-is-merged usr-is-merged 37 install ok installed util-linux util-linux 2.39.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-3 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'remove', 'adduser', 'fonts-mathjax', 'gromacs-data', 'ibverbs-providers:amd64', 'isa-support:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs8:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmunge2:amd64', 'libmuparser2v5:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support', 'gromacs'] 0m42.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser fonts-mathjax gromacs gromacs-data ibverbs-providers isa-support libatomic1 libblas3 libbsd0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libgromacs8 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjs-mathjax liblapack3 libmunge2 libmuparser2v5 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 sse4.2-support 0 upgraded, 0 newly installed, 45 to remove and 0 not upgraded. After this operation, 505 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 33908 files and directories currently installed.) Removing gromacs (2023.3-1) ... Removing libgromacs8:amd64 (2023.3-1) ... Removing libopenmpi3:amd64 (4.1.6-1) ... Removing libucx0:amd64 (1.15.0-1) ... Removing libfabric1:amd64 (1.17.0-3) ... Removing librdmacm1:amd64 (48.0-1) ... Removing gromacs-data (2023.3-1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing ibverbs-providers:amd64 (48.0-1) ... Removing sse4.2-support (20) ... Removing isa-support:amd64 (20) ... Removing libatomic1:amd64 (13.2.0-6) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libpmix2:amd64 (5.0.1-2) ... Removing libhwloc-plugins:amd64 (2.9.3-1) ... Removing libxnvctrl0:amd64 (525.125.06-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-4) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Removing libfftw3-double3:amd64 (3.3.10-1) ... Removing libfftw3-single3:amd64 (3.3.10-1) ... Removing libgfortran5:amd64 (13.2.0-6) ... Removing libmuparser2v5:amd64 (2.3.3-0.1) ... Removing libgomp1:amd64 (13.2.0-6) ... Removing libhwloc15:amd64 (2.9.3-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3) ... Removing libicu72:amd64 (72.1-4) ... Removing libmunge2:amd64 (0.5.15-3) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.16-1) ... Removing libpciaccess0:amd64 (0.17-2) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1) ... Removing libibverbs1:amd64 (48.0-1) ... Removing adduser (3.137) ... Removing libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.2+b1) ... Processing triggers for libc-bin (2.37-12) ... 0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'remove', 'adduser', 'fonts-mathjax', 'gromacs-data', 'ibverbs-providers:amd64', 'isa-support:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs8:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmunge2:amd64', 'libmuparser2v5:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support', 'gromacs'] 0m42.4s INFO: Running scripts post_remove 0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_remove_exceptions'] 0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_remove_exceptions'] 0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--purge', 'adduser', 'fonts-mathjax', 'gromacs-data', 'ibverbs-providers:amd64', 'isa-support:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs8:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmunge2:amd64', 'libmuparser2v5:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support'] 0m42.5s DUMP: (Reading database ... 5223 files and directories currently installed.) Purging configuration files for adduser (3.137) ... dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove gromacs-data which isn't installed Purging configuration files for ibverbs-providers:amd64 (48.0-1) ... dpkg: warning: ignoring request to remove isa-support which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgromacs8 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libmuparser2v5 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.2) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for sse4.2-support (20) ... 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--purge', 'adduser', 'fonts-mathjax', 'gromacs-data', 'ibverbs-providers:amd64', 'isa-support:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs8:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmunge2:amd64', 'libmuparser2v5:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--purge', 'gromacs'] 0m42.5s DUMP: dpkg: warning: ignoring request to remove gromacs which isn't installed 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--purge', 'gromacs'] 0m42.5s INFO: Running scripts post_purge 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_purge_exceptions'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_purge_exceptions'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--purge', '--pending'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--purge', '--pending'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--remove', '--pending'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg', '--remove', '--pending'] 0m42.6s INFO: Running scripts post_test 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_test_exceptions'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'tmp/scripts/post_test_exceptions'] 0m42.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m43.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m43.7s DEBUG: No broken symlinks as far as we can find. 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-divert', '--list'] 0m43.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'dpkg-divert', '--list'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'clean'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpguud4ap5', 'apt-get', 'clean'] 0m43.7s DEBUG: Recording chroot state 0m44.4s INFO: PASS: Installation and purging test. 0m44.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/shm'] 0m44.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/shm'] 0m44.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/console'] 0m44.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/console'] 0m44.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/ptmx'] 0m44.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/ptmx'] 0m44.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/pts'] 0m44.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/dev/pts'] 0m44.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/proc'] 0m44.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpguud4ap5/proc'] 0m44.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m45.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpguud4ap5'] 0m45.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpguud4ap5 0m45.0s INFO: PASS: All tests. 0m45.0s INFO: piuparts run ends. ret=0 End: 2023-10-26 21:48:35 GMT