Start: 2023-10-05 14:12:31 GMT Package: python3-cctbx Source: cctbx (2022.9+ds2+~3.11.2+ds1-6) Version: 2022.9+ds2+~3.11.2+ds1-6+b1 Installed-Size: 276324 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: ca-certificates, libcctbx-dev (= 2022.9+ds2+~3.11.2+ds1-6+b1), libcctbx0 (= 2022.9+ds2+~3.11.2+ds1-6+b1), python3-pycbf (>= 0.9.7+dfsg1-2~), python3 (<< 3.12), python3 (>= 3.11~), python3-matplotlib, python3-mrcfile, python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.74.0 (>= 1.74.0), libboost-numpy1.74.0-py311, libboost-python1.74.0 (>= 1.74.0), libboost-python1.74.0-py311, libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.34), libcbf1 (>= 0.9.7+dfsg1-2~), libccp4c0 (>= 8.0.0), libgcc-s1 (>= 4.0), libgl1, libglu1-mesa | libglu1, libhdf5-103-1, libmmdb2-0 (>= 2.0.22), libssm2 (>= 1.4.0), libstdc++6 (>= 11) Description: Python Toolbox for crystallography Homepage: https://github.com/cctbx/cctbx_project Description-md5: 82495d7385342d38e22c572566893a2d Tag: field::physics, implemented-in::python, role::program, science::calculation, science::plotting, science::visualisation, use::analysing, use::calculating, use::viewing Section: python Priority: optional Filename: pool/main/c/cctbx/python3-cctbx_2022.9+ds2+~3.11.2+ds1-6+b1_amd64.deb Size: 35865584 MD5sum: f27282ff2dc5a37c62e04b72d285cfca SHA256: 6e3c75961b5a43fe52ebe6bc79ca1a73844a0beb042358155c75b3fd198188ee Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --merged-usr -i /usr/lib32/ -i /usr/libx32/ --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt 'python3-cctbx=2022.9+ds2+~3.11.2+ds1-6+b1' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --merged-usr -i /usr/lib32/ -i /usr/libx32/ --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt 'python3-cctbx=2022.9+ds2+~3.11.2+ds1-6+b1' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-25-amd64 #1 SMP Debian 5.10.191-1 (2023-08-16) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1c1cb4wj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1c1cb4wj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1c1cb4wj/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'update'] 0m6.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9513 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7028 kB] Fetched 16.7 MB in 3s (5505 kB/s) Reading package lists... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'update'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', '-yf', 'dist-upgrade'] 0m6.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', '-yf', 'dist-upgrade'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.9s DUMP: 80a224318cf6b849e4445c5e3723349b - 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.9s INFO: Running scripts post_setup 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_dummy_users'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_forbid_home'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_minimize'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_setup_zz_backports'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'clean'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'clean'] 0m8.2s DEBUG: Recording chroot state 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.7s DUMP: install ok installed apt apt 2.7.6 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b5 install ok installed bsdutils bsdutils 1:2.39.2-2 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.13 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.22.0 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-4 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.6 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libblkid1:amd64 libblkid1 2.39.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-12 install ok installed libc6:amd64 libc6 2.37-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-2 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.4-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.2-2 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-7 install ok installed libpam-runtime libpam-runtime 1.5.2-7 install ok installed libpam0g:amd64 libpam0g 1.5.2-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-2 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 254.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20230625-2 install ok installed libudev1:amd64 libudev1 254.5-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-2 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20230808-1 install ok installed mount mount 2.39.2-2 install ok installed ncurses-base ncurses-base 6.4+20230625-2 install ok installed ncurses-bin ncurses-bin 6.4+20230625-2 install ok installed passwd passwd 1:4.13+dfsg1-2 install ok installed perl-base perl-base 5.36.0-9 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.08-1 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-10 install ok installed usr-is-merged usr-is-merged 37 install ok installed util-linux util-linux 2.39.2-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-3 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-divert', '--list'] 0m8.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-divert', '--list'] 0m8.8s INFO: Running scripts is_testable 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/is_testable_uninstallable'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/is_testable_uninstallable'] 0m8.8s INFO: apt-cache does not know about any of the requested packages 0m8.8s INFO: Running scripts pre_test 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_test_exceptions'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_test_exceptions'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_test_root_password'] 0m8.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_test_root_password'] 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 0m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 0m9.6s DEBUG: No broken symlinks as far as we can find. 0m9.6s INFO: Running scripts pre_install 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_extras'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_extras'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 0m10.3s DEBUG: No broken symlinks as far as we can find. 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-cache', 'policy'] 0m11.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-cache', 'policy'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-cache', 'policy', 'python3-cctbx'] 0m11.3s DUMP: python3-cctbx: Installed: (none) Candidate: 2022.9+ds2+~3.11.2+ds1-6+b1 Version table: 2022.9+ds2+~3.11.2+ds1-6+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-cache', 'policy', 'python3-cctbx'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', '-y', 'install', 'python3-cctbx=2022.9+ds2+~3.11.2+ds1-6+b1'] 1m55.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adduser adwaita-icon-theme at-spi2-common binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-13 dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service dmsetup fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx g++ g++-13 gcc gcc-13 gtk-update-icon-cache hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libapparmor1 libargon2-1 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbinutils libblas3 libboost-dev libboost-numpy1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcbf1 libcc1-0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcctbx-dev libcctbx0 libcloudproviders0 libcolord2 libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 libevdev2 libexpat1 libexpat1-dev libfdisk1 libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-13-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwasan0 libice6 libicu72 libimagequant0 libinput-bin libinput10 libip4tc2 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm16 liblsan0 libmd4c0 libmmdb2-0 libmpc3 libmpfr6 libmtdev1 libncursesw6 libnetcdf19 libnghttp2-14 libnotify4 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopengl0 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1 libssl3 libssm2 libstdc++-13-dev libsystemd-shared libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk-gl3.2-1 libwxgtk3.2-1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxsimd-dev libxslt1.1 libxss1 libxtst6 libxxf86vm1 libz3-4 linux-libc-dev media-types openssl procps pymol-data python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-idna python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-mrcfile python3-numpy python3-opengl python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pkg-resources python3-ply python3-procrunner python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-pythran python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3-wxgtk4.0 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto shared-mime-info sphinx-rtd-theme-common systemd systemd-dev systemd-sysv tk8.6-blt2.5 unicode-data x11-common xkb-data zlib1g-dev Suggested packages: liblocale-gettext-perl perl cron quota binutils-doc gprofng-gui blt-demo cpp-doc gcc-13-locales cpp-13-doc g++-multilib g++-13-multilib gcc-13-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-13-multilib libboost-doc libboost1.74-doc gccxml libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc colord cups-common glew-utils low-memory-monitor krb5-doc krb5-user gvfs libjs-jquery-ui-docs liblcms2-utils notification-daemon pciutils qgnomeplatform-qt5 qt5-image-formats-plugins lm-sensors libstdc++-13-doc tcl8.6 tk8.6 libwacom-bin libxsimd-doc python3-doc python3-venv python-attr-doc python-charset-normalizer-doc python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python3-pytest libgle3 python-pil-doc python3-setuptools python-ply-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg wx3.2-doc python3.11-venv python3.11-doc binfmt-support readline-doc systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved libfido2-1 libqrencode4 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0 polkitd python3-pefile Recommended packages: librsvg2-common at-spi2-core manpages manpages-dev libc-devtools libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgtk-3-bin javascript-common krb5-locales libldap-common libgpm2 publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules psmisc python3-bs4 python3-html5lib libglut-dev python3-olefile isympy-common systemd-timesyncd | time-daemon libnss-systemd The following NEW packages will be installed: adduser adwaita-icon-theme at-spi2-common binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-13 dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service dmsetup fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx g++ g++-13 gcc gcc-13 gtk-update-icon-cache hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libapparmor1 libargon2-1 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbinutils libblas3 libboost-dev libboost-numpy1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcbf1 libcc1-0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcctbx-dev libcctbx0 libcloudproviders0 libcolord2 libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 libevdev2 libexpat1 libexpat1-dev libfdisk1 libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-13-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwasan0 libice6 libicu72 libimagequant0 libinput-bin libinput10 libip4tc2 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm16 liblsan0 libmd4c0 libmmdb2-0 libmpc3 libmpfr6 libmtdev1 libncursesw6 libnetcdf19 libnghttp2-14 libnotify4 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopengl0 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1 libssl3 libssm2 libstdc++-13-dev libsystemd-shared libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk-gl3.2-1 libwxgtk3.2-1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxsimd-dev libxslt1.1 libxss1 libxtst6 libxxf86vm1 libz3-4 linux-libc-dev media-types openssl procps pymol-data python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-brotli python3-cctbx python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-idna python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-mrcfile python3-numpy python3-opengl python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pkg-resources python3-ply python3-procrunner python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-pythran python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3-wxgtk4.0 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto shared-mime-info sphinx-rtd-theme-common systemd systemd-dev systemd-sysv tk8.6-blt2.5 unicode-data x11-common xkb-data zlib1g-dev 0 upgraded, 363 newly installed, 0 to remove and 0 not upgraded. Need to get 330 MB of archives. After this operation, 1696 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.0.11-1 [2016 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libargon2-1 amd64 0~20190702+dfsg-3 [19.8 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dmsetup amd64 2:1.02.185-2 [82.0 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-2 [133 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libjson-c5 amd64 0.17-1 [43.7 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libcryptsetup12 amd64 2:2.6.1-5 [223 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libfdisk1 amd64 2.39.2-2 [201 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libkmod2 amd64 30+20230601-2 [58.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libapparmor1 amd64 3.0.12-1 [41.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libip4tc2 amd64 1.8.9-2 [19.0 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsystemd-shared amd64 254.5-1 [1837 kB] Get:12 http://deb.debian.org/debian sid/main amd64 systemd-dev all 254.5-1 [54.7 kB] Get:13 http://deb.debian.org/debian sid/main amd64 systemd amd64 254.5-1 [3304 kB] Get:14 http://deb.debian.org/debian sid/main amd64 systemd-sysv amd64 254.5-1 [45.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.14.10-1 [202 kB] Get:16 http://deb.debian.org/debian sid/main amd64 dbus-bin amd64 1.14.10-1 [105 kB] Get:17 http://deb.debian.org/debian sid/main amd64 dbus-session-bus-common all 1.14.10-1 [78.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:19 http://deb.debian.org/debian sid/main amd64 dbus-daemon amd64 1.14.10-1 [184 kB] Get:20 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:21 http://deb.debian.org/debian sid/main amd64 dbus-system-bus-common all 1.14.10-1 [79.2 kB] Get:22 http://deb.debian.org/debian sid/main amd64 dbus amd64 1.14.10-1 [97.3 kB] Get:23 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.6-1 [815 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.6-1 [2028 kB] Get:26 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.4-5+b1 [26.5 kB] Get:27 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20230625-2 [134 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-4 [32.8 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-4 [79.4 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:32 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-4 [332 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-4 [134 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:37 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.43.1-1 [872 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.6-1 [1811 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.6-1 [586 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.4-5+b1 [9492 B] Get:43 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.4-5+b1 [26.5 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.3-1 [63.2 kB] Get:45 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.3-1 [762 kB] Get:46 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.0.11-1 [1416 kB] Get:47 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20230311 [153 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libpam-systemd amd64 254.5-1 [243 kB] Get:49 http://deb.debian.org/debian sid/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.0-2 [1449 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:54 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.40-1 [275 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.18-1 [40.9 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:59 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-3 [170 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.3 [107 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.3 [308 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-1 [322 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-1+b1 [139 kB] Get:64 http://deb.debian.org/debian sid/main amd64 gtk-update-icon-cache amd64 3.24.38-5 [45.0 kB] Get:65 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 45.0-1 [739 kB] Get:66 http://deb.debian.org/debian sid/main amd64 at-spi2-common all 2.50.0-1 [163 kB] Get:67 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.41-5 [2504 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.41-5 [75.1 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.41-5 [512 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.41-5 [151 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.41-5 [87.0 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.41-5 [766 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:74 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.41-5 [2218 kB] Get:75 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.41-5 [80.0 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1 [437 kB] Get:79 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:80 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:81 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.14.2-6 [316 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.14.2-6 [387 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.7-4 [115 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:92 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:95 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:96 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.26-3 [700 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.1-1 [713 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:100 http://deb.debian.org/debian sid/main amd64 cpp-13 amd64 13.2.0-4 [9911 kB] Get:101 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:13.2.0-1 [6992 B] Get:102 http://deb.debian.org/debian sid/main amd64 dbus-user-session amd64 1.14.10-1 [78.0 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libdconf1 amd64 0.40.0-4 [40.9 kB] Get:104 http://deb.debian.org/debian sid/main amd64 dconf-service amd64 0.40.0-4 [31.6 kB] Get:105 http://deb.debian.org/debian sid/main amd64 dconf-gsettings-backend amd64 0.40.0-4 [27.8 kB] Get:106 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.14.2-6 [462 kB] Get:107 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:108 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 13.2.0-4 [42.9 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 13.2.0-4 [131 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 13.2.0-4 [26.1 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 13.2.0-4 [9272 B] Get:113 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 13.2.0-4 [2558 kB] Get:114 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 13.2.0-4 [1102 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 13.2.0-4 [2334 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 13.2.0-4 [1010 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 13.2.0-4 [1154 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 13.2.0-4 [145 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.2.0-4 [2543 kB] Get:120 http://deb.debian.org/debian sid/main amd64 gcc-13 amd64 13.2.0-4 [19.6 MB] Get:121 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:13.2.0-1 [5224 B] Get:122 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.37-12 [46.3 kB] Get:123 http://deb.debian.org/debian sid/main amd64 linux-libc-dev amd64 6.5.3-1 [1985 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-2 [118 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:127 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.37-12 [1905 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libstdc++-13-dev amd64 13.2.0-4 [2222 kB] Get:130 http://deb.debian.org/debian sid/main amd64 g++-13 amd64 13.2.0-4 [10.9 MB] Get:131 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:13.2.0-1 [1356 B] Get:132 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.1-1 [23.3 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4 [49.5 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libatk1.0-0 amd64 2.50.0-1 [49.7 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libatspi2.0-0 amd64 2.50.0-1 [74.0 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libatk-bridge2.0-0 amd64 2.50.0-1 [65.2 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-11 [110 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-11 [42.2 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-11 [45.8 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0+ds1-22 [9511 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:146 http://deb.debian.org/debian sid/main amd64 libboost-python1.74.0 amd64 1.74.0+ds1-22 [291 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libboost-numpy1.74.0 amd64 1.74.0+ds1-22 [229 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libpython3.11 amd64 3.11.6-1 [1990 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.5.0-2 [149 kB] Get:150 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-3 [917 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.6-1 [4569 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.11.4-5+b1 [9756 B] Get:153 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.6-1 [508 kB] Get:154 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 5.3.0-7 [131 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.11.4-5+b1 [26.2 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libboost-python1.74-dev amd64 1.74.0+ds1-22 [312 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get:162 http://deb.debian.org/debian sid/main amd64 libboost-thread1.74.0 amd64 1.74.0+ds1-22 [258 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-1 [530 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libcairo-gobject2 amd64 1.18.0-1 [129 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-3 [19.3 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-3 [56.6 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.56.0-1 [73.1 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:173 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-2 [214 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libcurl4 amd64 8.3.0-2 [406 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.1-1 [7656 B] Get:177 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.10+repack-2 [1239 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libcbf1 amd64 0.9.7+dfsg1-2+b2 [353 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libccp4-data all 8.0.0-2 [62.3 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libccp4c0 amd64 8.0.0-2 [88.5 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 13.2.0-4 [804 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libmmdb2-0 amd64 2.0.22-1 [338 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libccp4f0 amd64 8.0.0-2 [210 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libccp4-dev amd64 8.0.0-2 [42.8 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libcctbx0 amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [2369 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libcctbx-dev amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [1148 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libcloudproviders0 amd64 0.3.4-1 [28.6 kB] Get:188 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libcolord2 amd64 1.4.6-3 [139 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libcups2 amd64 2.4.2-6 [245 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 8.3.0-2 [400 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libdouble-conversion3 amd64 3.3.0-1 [40.1 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.115-1 [7172 B] Get:195 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.115-1 [37.6 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.115-1 [20.7 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.115-1 [62.7 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.115-1 [18.8 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.115-1 [21.6 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libwayland-server0 amd64 1.22.0-2.1 [32.8 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libgbm1 amd64 23.2.1-1 [39.2 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 23.2.1-1 [34.8 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libwayland-client0 amd64 1.22.0-2.1 [25.4 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [232 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:214 http://deb.debian.org/debian sid/main amd64 libegl-mesa0 amd64 23.2.1-1 [116 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libelf1 amd64 0.189-4 [174 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libepoxy0 amd64 1.5.10-1 [189 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libevdev2 amd64 1.13.1+dfsg-1 [32.0 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3 [71.1 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libllvm16 amd64 1:16.0.6-15 [23.1 MB] Get:225 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.0-8 [14.4 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.0-8 [34.4 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 23.2.1-1 [8306 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 23.2.1-1 [148 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libglew2.2 amd64 2.2.0-4+b1 [175 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libopengl0 amd64 1.6.0-1 [30.6 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libglu1-mesa amd64 9.0.2-1.1 [178 kB] Get:234 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:235 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.0.1-1 [2158 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.51.0+ds-2 [213 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-2 [46.2 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-2 [34.1 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libwayland-cursor0 amd64 1.22.0-2.1 [11.1 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libwayland-egl1 amd64 1.22.0-2.1 [5360 B] Get:243 http://deb.debian.org/debian sid/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:244 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get:245 http://deb.debian.org/debian sid/main amd64 libxdamage1 amd64 1:1.1.6-1 [15.1 kB] Get:246 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get:247 http://deb.debian.org/debian sid/main amd64 xkb-data all 2.38-2 [782 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libxkbcommon0 amd64 1.5.0-1 [106 kB] Get:249 http://deb.debian.org/debian sid/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libgtk-3-common all 3.24.38-5 [3892 kB] Get:251 http://deb.debian.org/debian sid/main amd64 libgtk-3-0 amd64 3.24.38-5 [2721 kB] Get:252 http://deb.debian.org/debian sid/main amd64 libgudev-1.0-0 amd64 238-2 [14.0 kB] Get:253 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.10+repack-2 [62.9 kB] Get:254 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:255 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libwacom-common all 2.8.0-1 [60.6 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libwacom9 amd64 2.8.0-1 [21.7 kB] Get:258 http://deb.debian.org/debian sid/main amd64 libinput-bin amd64 1.23.0-2 [23.7 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libinput10 amd64 1.23.0-2 [127 kB] Get:261 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.24+ds-1 [6648 kB] Get:263 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:264 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libnetcdf19 amd64 1:4.9.2-2 [471 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libnotify4 amd64 0.8.2-1 [25.4 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.24+ds-1 [36.0 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libopenblas-pthread-dev amd64 0.3.24+ds-1 [4687 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libopenblas-dev amd64 0.3.24+ds-1 [48.6 kB] Get:271 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:272 http://deb.debian.org/debian sid/main amd64 libpcre2-16-0 amd64 10.42-4 [245 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libpcre2-32-0 amd64 10.42-4 [234 kB] Get:274 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.11.4-5+b1 [1068 B] Get:275 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6 [244 kB] Get:276 http://deb.debian.org/debian sid/main amd64 libqt5core5a amd64 5.15.10+dfsg-3 [1831 kB] Get:277 http://deb.debian.org/debian sid/main amd64 libqt5dbus5 amd64 5.15.10+dfsg-3 [213 kB] Get:278 http://deb.debian.org/debian sid/main amd64 libegl1 amd64 1.6.0-1 [33.7 kB] Get:279 http://deb.debian.org/debian sid/main amd64 libqt5network5 amd64 5.15.10+dfsg-3 [675 kB] Get:280 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:281 http://deb.debian.org/debian sid/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:282 http://deb.debian.org/debian sid/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:283 http://deb.debian.org/debian sid/main amd64 libxcb-image0 amd64 0.4.0-2 [22.9 kB] Get:284 http://deb.debian.org/debian sid/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:285 http://deb.debian.org/debian sid/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:286 http://deb.debian.org/debian sid/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Get:287 http://deb.debian.org/debian sid/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB] Get:288 http://deb.debian.org/debian sid/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB] Get:289 http://deb.debian.org/debian sid/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB] Get:290 http://deb.debian.org/debian sid/main amd64 libxkbcommon-x11-0 amd64 1.5.0-1 [15.6 kB] Get:291 http://deb.debian.org/debian sid/main amd64 libqt5gui5 amd64 5.15.10+dfsg-3 [3437 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libqt5widgets5 amd64 5.15.10+dfsg-3 [2377 kB] Get:293 http://deb.debian.org/debian sid/main amd64 libqt5xml5 amd64 5.15.10+dfsg-3 [122 kB] Get:294 http://deb.debian.org/debian sid/main amd64 libqt5designer5 amd64 5.15.10-5 [2747 kB] Get:295 http://deb.debian.org/debian sid/main amd64 libqt5sql5 amd64 5.15.10+dfsg-3 [122 kB] Get:296 http://deb.debian.org/debian sid/main amd64 libqt5help5 amd64 5.15.10-5 [149 kB] Get:297 http://deb.debian.org/debian sid/main amd64 libqt5opengl5 amd64 5.15.10+dfsg-3 [148 kB] Get:298 http://deb.debian.org/debian sid/main amd64 libqt5printsupport5 amd64 5.15.10+dfsg-3 [203 kB] Get:299 http://deb.debian.org/debian sid/main amd64 libqt5test5 amd64 5.15.10+dfsg-3 [147 kB] Get:300 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1 [13.7 kB] Get:301 http://deb.debian.org/debian sid/main amd64 libssm2 amd64 1.4.0-2 [82.2 kB] Get:302 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.3 [107 kB] Get:303 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.3 [120 kB] Get:304 http://deb.debian.org/debian sid/main amd64 libwxbase3.2-1 amd64 3.2.2+dfsg-4 [958 kB] Get:305 http://deb.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB] Get:306 http://deb.debian.org/debian sid/main amd64 libwxgtk3.2-1 amd64 3.2.2+dfsg-4 [4522 kB] Get:307 http://deb.debian.org/debian sid/main amd64 libwxgtk-gl3.2-1 amd64 3.2.2+dfsg-4 [78.1 kB] Get:308 http://deb.debian.org/debian sid/main amd64 libxsimd-dev amd64 10.0.0-3 [101 kB] Get:309 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:310 http://deb.debian.org/debian sid/main amd64 pymol-data all 2.5.0+dfsg-1 [1401 kB] Get:311 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:312 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.11.4-5+b1 [1060 B] Get:313 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.11.4-5+b1 [1072 B] Get:314 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:315 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.1.0-2 [67.1 kB] Get:316 http://deb.debian.org/debian sid/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:317 http://deb.debian.org/debian sid/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:318 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:319 http://deb.debian.org/debian sid/main amd64 python3-pycbf amd64 0.9.7+dfsg1-2+b2 [163 kB] Get:320 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:321 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:322 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.0.0-1 [477 kB] Get:323 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.11.5-1 [108 kB] Get:324 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.0.0-1 [75.6 kB] Get:325 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:326 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:327 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:328 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:329 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:330 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:331 http://deb.debian.org/debian sid/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:332 http://deb.debian.org/debian sid/main amd64 python3-pythran amd64 0.14.0+ds-2 [440 kB] Get:333 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:334 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:335 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:336 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-6 [3868 kB] Get:337 http://deb.debian.org/debian sid/main amd64 python3-tz all 2023.3.post1-1 [30.8 kB] Get:338 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:339 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 4.9.3-1 [1193 kB] Get:340 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:341 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:342 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:343 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:344 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.1-1 [37.4 kB] Get:345 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:346 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 1.3.0+dfsg-1 [997 kB] Get:347 http://deb.debian.org/debian sid/main amd64 python3-mrcfile all 1.4.3-3 [113 kB] Get:348 http://deb.debian.org/debian sid/main amd64 python3-pint all 0.19.2-1 [186 kB] Get:349 http://deb.debian.org/debian sid/main amd64 python3-procrunner amd64 1.1.0-1+b1 [12.3 kB] Get:350 http://deb.debian.org/debian sid/main amd64 python3-opengl all 3.1.6+dfsg-4 [605 kB] Get:351 http://deb.debian.org/debian sid/main amd64 python3-pyqt5.sip amd64 12.12.2-1 [56.4 kB] Get:352 http://deb.debian.org/debian sid/main amd64 python3-pyqt5 amd64 5.15.9+dfsg-2 [2492 kB] Get:353 http://deb.debian.org/debian sid/main amd64 python3-pyqt5.qtopengl amd64 5.15.9+dfsg-2 [206 kB] Get:354 http://deb.debian.org/debian sid/main amd64 python3-pymol amd64 2.5.0+dfsg-1+b3 [3703 kB] Get:355 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.7.22-1 [150 kB] Get:356 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.2.0-1 [50.7 kB] Get:357 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.3-2 [39.1 kB] Get:358 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.16-1 [115 kB] Get:359 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:360 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:361 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:362 http://deb.debian.org/debian sid/main amd64 python3-wxgtk4.0 amd64 4.2.1+dfsg-1 [7223 kB] Get:363 http://deb.debian.org/debian sid/main amd64 python3-cctbx amd64 2022.9+ds2+~3.11.2+ds1-6+b1 [35.9 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 330 MB in 10s (34.2 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5203 files and directories currently installed.) Preparing to unpack .../00-libssl3_3.0.11-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1) ... Selecting previously unselected package libargon2-1:amd64. Preparing to unpack .../01-libargon2-1_0~20190702+dfsg-3_amd64.deb ... Unpacking libargon2-1:amd64 (0~20190702+dfsg-3) ... Selecting previously unselected package dmsetup. Preparing to unpack .../02-dmsetup_2%3a1.02.185-2_amd64.deb ... Unpacking dmsetup (2:1.02.185-2) ... Selecting previously unselected package libdevmapper1.02.1:amd64. Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.185-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Selecting previously unselected package libjson-c5:amd64. Preparing to unpack .../04-libjson-c5_0.17-1_amd64.deb ... Unpacking libjson-c5:amd64 (0.17-1) ... Selecting previously unselected package libcryptsetup12:amd64. Preparing to unpack .../05-libcryptsetup12_2%3a2.6.1-5_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.6.1-5) ... Selecting previously unselected package libfdisk1:amd64. Preparing to unpack .../06-libfdisk1_2.39.2-2_amd64.deb ... Unpacking libfdisk1:amd64 (2.39.2-2) ... Selecting previously unselected package libkmod2:amd64. Preparing to unpack .../07-libkmod2_30+20230601-2_amd64.deb ... Unpacking libkmod2:amd64 (30+20230601-2) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../08-libapparmor1_3.0.12-1_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.12-1) ... Selecting previously unselected package libip4tc2:amd64. Preparing to unpack .../09-libip4tc2_1.8.9-2_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.9-2) ... Selecting previously unselected package libsystemd-shared:amd64. Preparing to unpack .../10-libsystemd-shared_254.5-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (254.5-1) ... Selecting previously unselected package systemd-dev. Preparing to unpack .../11-systemd-dev_254.5-1_all.deb ... Unpacking systemd-dev (254.5-1) ... Setting up libssl3:amd64 (3.0.11-1) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5337 files and directories currently installed.) Preparing to unpack .../systemd_254.5-1_amd64.deb ... Unpacking systemd (254.5-1) ... Setting up libargon2-1:amd64 (0~20190702+dfsg-3) ... Setting up libjson-c5:amd64 (0.17-1) ... Setting up libfdisk1:amd64 (2.39.2-2) ... Setting up libkmod2:amd64 (30+20230601-2) ... Setting up libapparmor1:amd64 (3.0.12-1) ... Setting up libip4tc2:amd64 (1.8.9-2) ... Setting up libsystemd-shared:amd64 (254.5-1) ... Setting up systemd-dev (254.5-1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Setting up libcryptsetup12:amd64 (2:2.6.1-5) ... Setting up systemd (254.5-1) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Setting up dmsetup (2:1.02.185-2) ... Selecting previously unselected package systemd-sysv. (Reading database ... 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Setting up media-types (10.1.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libpixman-1-0:amd64 (0.42.2-1) ... Setting up libsharpyuv0:amd64 (1.3.2-0.3) ... Setting up libwayland-server0:amd64 (1.22.0-2.1) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up systemd-sysv (254.5-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libdouble-conversion3:amd64 (3.3.0-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1+b1) ... Setting up fonts-lato (2.015-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-3) ... Setting up libantlr3c-3.4-0:amd64 (3.4+dfsg-4) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libdatrie1:amd64 (0.2.13-2+b1) ... Setting up libmmdb2-0:amd64 (2.0.22-1) ... Setting up libglib2.0-0:amd64 (2.78.0-2) ... Setting up libglvnd0:amd64 (1.6.0-1) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.43.1-1) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up binutils-common:amd64 (2.41-5) ... Setting up x11-common (1:7.7+23) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-8) ... Setting up libnghttp2-14:amd64 (1.56.0-1) ... Setting up libdeflate0:amd64 (1.18-1) ... Setting up libcloudproviders0:amd64 (0.3.4-1) ... Setting up linux-libc-dev:amd64 (6.5.3-1) ... Setting up libctf-nobfd0:amd64 (2.41-5) ... Setting up libqhull-r8.0:amd64 (2020.2-6) ... Setting up xkb-data (2.38-2) ... Setting up libccp4-data (8.0.0-2) ... Setting up libgomp1:amd64 (13.2.0-4) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libpcre2-16-0:amd64 (10.42-4) ... Setting up libaec0:amd64 (1.1.1-1) ... Setting up libcolord2:amd64 (1.4.6-3) ... Setting up libsframe1:amd64 (2.41-5) ... Setting up libopengl0:amd64 (1.6.0-1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-3) ... Setting up libdconf1:amd64 (0.40.0-4) ... Setting up unicode-data (15.1.0-1) ... Setting up libxsimd-dev:amd64 (10.0.0-3) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libpcre2-32-0:amd64 (10.42-4) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libann-cctbx0 (1.1.2+doc-9+b1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libepoxy0:amd64 (1.5.10-1) ... Setting up libmpfr6:amd64 (4.2.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libavahi-common-data:amd64 (0.8-11) ... Setting up libdbus-1-3:amd64 (1.14.10-1) ... Setting up libfribidi0:amd64 (1.0.13-3) ... Setting up libquadmath0:amd64 (13.2.0-4) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libproc2-0:amd64 (2:4.0.3-1) ... Setting up pymol-data (2.5.0+dfsg-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:amd64 (1.6.40-1) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (13.2.0-4) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libccp4c0:amd64 (8.0.0-2) ... Setting up libsensors5:amd64 (1:3.6.0-8) ... Setting up libncursesw6:amd64 (6.4+20230625-2) ... Setting up libk5crypto3:amd64 (1.20.1-4) ... Setting up libglapi-mesa:amd64 (23.2.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-3) ... Setting up libgfortran5:amd64 (13.2.0-4) ... Setting up libmtdev1:amd64 (1.1.6-1) ... Setting up libwebp7:amd64 (1.3.2-0.3) ... Setting up libubsan1:amd64 (13.2.0-4) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libhwasan0:amd64 (13.2.0-4) ... Setting up at-spi2-common (2.50.0-1) ... Setting up libcrypt-dev:amd64 (1:4.4.36-2) ... Setting up libtiff6:amd64 (4.5.1+git230720-1) ... Setting up dbus-session-bus-common (1.14.10-1) ... Setting up libasan8:amd64 (13.2.0-4) ... Setting up procps (2:4.0.3-1) ... Setting up libmd4c0:amd64 (0.4.8-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.11.0-2) ... Setting up libatk1.0-0:amd64 (2.50.0-1) ... Setting up libkrb5-3:amd64 (1.20.1-4) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1) ... Setting up libwayland-egl1:amd64 (1.22.0-2.1) ... Setting up libtsan2:amd64 (13.2.0-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.41-5) ... Setting up dbus-system-bus-common (1.14.10-1) ... Setting up libboost-python1.74.0 (1.74.0+ds1-22) ... Setting up libisl23:amd64 (0.26-3) ... Setting up libc-dev-bin (2.37-12) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.11-1) ... Setting up libwebpmux3:amd64 (1.3.2-0.3) ... Setting up libbsd0:amd64 (0.11.7-4) ... Setting up libdrm-common (2.4.115-1) ... Setting up libelf1:amd64 (0.189-4) ... Setting up libevdev2:amd64 (1.13.1+dfsg-1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.3.0+dfsg-1) ... Setting up libcc1-0:amd64 (13.2.0-4) ... Setting up dbus-bin (1.14.10-1) ... Setting up libgudev-1.0-0:amd64 (238-2) ... Setting up liblsan0:amd64 (13.2.0-4) ... Setting up libsz2:amd64 (1.1.1-1) ... Setting up libitm1:amd64 (13.2.0-4) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libboost-thread1.74.0:amd64 (1.74.0+ds1-22) ... Setting up libboost-numpy1.74.0 (1.74.0+ds1-22) ... Setting up libann-cctbx-dev (1.1.2+doc-9+b1) ... Setting up libccp4f0:amd64 (8.0.0-2) ... Setting up libwacom-common (2.8.0-1) ... Setting up libxkbcommon0:amd64 (1.5.0-1) ... Setting up libwayland-client0:amd64 (1.22.0-2.1) ... Setting up libctf0:amd64 (2.41-5) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.24+ds-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libssm2:amd64 (1.4.0-2) ... Setting up cpp-13 (13.2.0-4) ... Setting up libxcb-xinput0:amd64 (1.15-1) ... Setting up libccp4-dev:amd64 (8.0.0-2) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libwacom9:amd64 (2.8.0-1) ... Setting up fontconfig-config (2.14.2-6) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.3) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.15-1) ... Setting up libavahi-common3:amd64 (0.8-11) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up dbus-daemon (1.14.10-1) ... Setting up libwxbase3.2-1:amd64 (3.2.2+dfsg-4) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libinput-bin (1.23.0-2) ... Setting up libxcb-xkb1:amd64 (1.15-1) ... Setting up libxcb-image0:amd64 (0.4.0-2) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.41-5) ... Setting up libxcb-xinerama0:amd64 (1.15-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up dbus (1.14.10-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.2-1) ... Setting up libxkbcommon-x11-0:amd64 (1.5.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-4) ... Setting up libqt5core5a:amd64 (5.15.10+dfsg-3) ... Setting up libjs-sphinxdoc (5.3.0-7) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up libdrm2:amd64 (2.4.115-1) ... Setting up libgcc-13-dev:amd64 (13.2.0-4) ... Setting up libopenblas0:amd64 (0.3.24+ds-1) ... Setting up libqt5dbus5:amd64 (5.15.10+dfsg-3) ... Setting up libwayland-cursor0:amd64 (1.22.0-2.1) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up cpp (4:13.2.0-1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libpam-systemd:amd64 (254.5-1) ... Setting up libcurl4:amd64 (8.3.0-2) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.0.1-1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... Setting up libfontconfig1:amd64 (2.14.2-6) ... Setting up libllvm16:amd64 (1:16.0.6-15) ... Setting up libqt5test5:amd64 (5.15.10+dfsg-3) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-11) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.41-5) ... Setting up libdrm-amdgpu1:amd64 (2.4.115-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.24+ds-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libinput10:amd64 (1.23.0-2) ... Setting up gtk-update-icon-cache (3.24.38-5) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1) ... Setting up fontconfig (2.14.2-6) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.115-1) ... Setting up libxdamage1:amd64 (1:1.1.6-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libgbm1:amd64 (23.2.1-1) ... Setting up libdrm-radeon1:amd64 (2.4.115-1) ... Setting up libpango-1.0-0:amd64 (1.51.0+ds-2) ... Setting up libdrm-intel1:amd64 (2.4.115-1) ... Setting up libgl1-mesa-dri:amd64 (23.2.1-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (8.3.0-2) ... Setting up binutils (2.41-5) ... Setting up libcairo2:amd64 (1.18.0-1) ... Setting up libqt5network5:amd64 (5.15.10+dfsg-3) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libqt5sql5:amd64 (5.15.10+dfsg-3) ... Setting up dbus-user-session (1.14.10-1) ... Setting up libopenblas-dev:amd64 (0.3.24+ds-1) ... Setting up libqt5xml5:amd64 (5.15.10+dfsg-3) ... Setting up libegl-mesa0:amd64 (23.2.1-1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up adwaita-icon-theme (45.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libnotify4:amd64 (0.8.2-1) ... Setting up libraqm0:amd64 (0.10.1-1) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up gcc-13 (13.2.0-4) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up libcups2:amd64 (2.4.2-6) ... Setting up libhdf5-103-1:amd64 (1.10.10+repack-2) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libegl1:amd64 (1.6.0-1) ... Setting up libcairo-gobject2:amd64 (1.18.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-2) ... Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-2) ... Setting up libhdf5-hl-100:amd64 (1.10.10+repack-2) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libglx-mesa0:amd64 (23.2.1-1) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up libpython3.11-stdlib:amd64 (3.11.6-1) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up dconf-service (0.40.0-4) ... Setting up libatspi2.0-0:amd64 (2.50.0-1) ... Setting up gcc (4:13.2.0-1) ... Setting up libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Setting up libatk-bridge2.0-0:amd64 (2.50.0-1) ... Setting up libgl1:amd64 (1.6.0-1) ... Setting up libglew2.2:amd64 (2.2.0-4+b1) ... Setting up libnetcdf19:amd64 (1:4.9.2-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.37-12) ... Setting up libstdc++-13-dev:amd64 (13.2.0-4) ... Setting up libpython3-stdlib:amd64 (3.11.4-5+b1) ... Setting up libcctbx0 (2022.9+ds2+~3.11.2+ds1-6+b1) ... Setting up g++-13 (13.2.0-4) ... Setting up python3.11 (3.11.6-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-22) ... Setting up libpython3.11:amd64 (3.11.6-1) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-4) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up libqt5gui5:amd64 (5.15.10+dfsg-3) ... Setting up libqt5widgets5:amd64 (5.15.10+dfsg-3) ... Setting up python3 (3.11.4-5+b1) ... Setting up python3-opengl (3.1.6+dfsg-4) ... Setting up libqt5help5:amd64 (5.15.10-5) ... Setting up python3-tz (2023.3.post1-1) ... Setting up python3-six (1.16.0-4) ... Setting up libqt5printsupport5:amd64 (5.15.10+dfsg-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (23.1-1) ... Setting up libexpat1-dev:amd64 (2.5.0-2) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-certifi (2023.7.22-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-pycbf (0.9.7+dfsg1-2+b2) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-2) ... Setting up python3-urllib3 (1.26.16-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-3) ... Setting up python3-pyqt5.sip (12.12.2-1) ... Setting up g++ (4:13.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libqt5opengl5:amd64 (5.15.10+dfsg-3) ... Setting up python3-lxml:amd64 (4.9.3-1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-procrunner (1.1.0-1+b1) ... Setting up libgtk-3-common (3.24.38-5) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... Setting up python3-sympy (1.12-6) ... Setting up python3-attr (23.1.0-2) ... Setting up libqt5designer5:amd64 (5.15.10-5) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-charset-normalizer (3.2.0-1) ... Setting up libgtk-3-0:amd64 (3.24.38-5) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.4-5+b1) ... Setting up python3-tk:amd64 (3.11.5-1) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pint (0.19.2-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libpython3.11-dev:amd64 (3.11.6-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-pyqt5 (5.15.9+dfsg-2) ... Setting up python3-mrcfile (1.4.3-3) ... Setting up libwxgtk3.2-1:amd64 (3.2.2+dfsg-4) ... Setting up python3-pyqt5.qtopengl (5.15.9+dfsg-2) ... Setting up libpython3-dev:amd64 (3.11.4-5+b1) ... Setting up libwxgtk-gl3.2-1:amd64 (3.2.2+dfsg-4) ... Setting up python3.11-dev (3.11.6-1) ... Setting up libpython3-all-dev:amd64 (3.11.4-5+b1) ... Setting up python3-dev (3.11.4-5+b1) ... Setting up python3-pymol (2.5.0+dfsg-1+b3) ... Setting up python3-all-dev (3.11.4-5+b1) ... Setting up libboost-python1.74-dev (1.74.0+ds1-22) ... Setting up libboost-python-dev (1.74.0.3) ... Setting up python3-pythran (0.14.0+ds-2) ... Setting up libcctbx-dev (2022.9+ds2+~3.11.2+ds1-6+b1) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-pil:amd64 (10.0.0-1) ... Setting up python3-pil.imagetk:amd64 (10.0.0-1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-wxgtk4.0 (4.2.1+dfsg-1) ... Setting up python3-cctbx (2022.9+ds2+~3.11.2+ds1-6+b1) ... Processing triggers for libc-bin (2.37-12) ... Processing triggers for systemd (254.5-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', '-y', 'install', 'python3-cctbx=2022.9+ds2+~3.11.2+ds1-6+b1'] 1m55.7s INFO: Running scripts post_install 1m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_install_exceptions'] 1m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_install_exceptions'] 1m55.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 1m57.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 2m2.7s ERROR: WARN: Broken symlinks: /usr/lib/x86_64-linux-gnu/qt-default/qtchooser/default.conf -> ../../../../share/qtchooser/qt5-x86_64-linux-gnu.conf (libqt5core5a:amd64) /etc/vconsole.conf -> default/keyboard /etc/default/locale -> ../locale.conf 2m2.8s INFO: /bin converted to /usr/bin by /usr merge 2m2.8s INFO: /lib converted to /usr/lib by /usr merge 2m2.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 2m2.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 2m2.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 2m2.8s INFO: /lib/modprobe.d converted to /usr/lib/modprobe.d by /usr merge 2m2.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 2m2.8s INFO: /lib/systemd/journald.conf.d converted to /usr/lib/systemd/journald.conf.d by /usr merge 2m2.8s INFO: /lib/systemd/network converted to /usr/lib/systemd/network by /usr merge 2m2.8s INFO: /lib/systemd/system-generators converted to /usr/lib/systemd/system-generators by /usr merge 2m2.8s INFO: /lib/systemd/system-preset converted to /usr/lib/systemd/system-preset by /usr merge 2m2.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 2m2.8s INFO: /lib/systemd/system/getty.target.wants converted to /usr/lib/systemd/system/getty.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/graphical.target.wants converted to /usr/lib/systemd/system/graphical.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/initrd-root-device.target.wants converted to /usr/lib/systemd/system/initrd-root-device.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/initrd-root-fs.target.wants converted to /usr/lib/systemd/system/initrd-root-fs.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/initrd.target.wants converted to /usr/lib/systemd/system/initrd.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/rc-local.service.d converted to /usr/lib/systemd/system/rc-local.service.d by /usr merge 2m2.8s INFO: /lib/systemd/system/rescue.target.wants converted to /usr/lib/systemd/system/rescue.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/sysinit.target.wants converted to /usr/lib/systemd/system/sysinit.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/systemd-localed.service.d converted to /usr/lib/systemd/system/systemd-localed.service.d by /usr merge 2m2.8s INFO: /lib/systemd/system/timers.target.wants converted to /usr/lib/systemd/system/timers.target.wants by /usr merge 2m2.8s INFO: /lib/systemd/system/user-.slice.d converted to /usr/lib/systemd/system/user-.slice.d by /usr merge 2m2.8s INFO: /lib/systemd/system/user@.service.d converted to /usr/lib/systemd/system/user@.service.d by /usr merge 2m2.8s INFO: /lib/systemd/system/user@0.service.d converted to /usr/lib/systemd/system/user@0.service.d by /usr merge 2m2.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 2m2.8s INFO: /lib/udev/hwdb.d converted to /usr/lib/udev/hwdb.d by /usr merge 2m2.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 2m2.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m2.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 2m2.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m2.8s INFO: /sbin converted to /usr/sbin by /usr merge 2m5.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', '-ac', '--ignore-obsolete'] 2m13.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', '-ac', '--ignore-obsolete'] 2m13.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m13.3s DUMP: 0.15.6 2m13.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m13.3s INFO: Running adequate version 0.15.6 now. 2m13.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'python3-cctbx'] 2m18.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'python3-cctbx'] 2m18.4s INFO: Running scripts pre_remove 2m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_exceptions'] 2m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/pre_remove_exceptions'] 2m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m37.0s DUMP: install ok installed adduser adduser 3.137 install ok installed adwaita-icon-theme adwaita-icon-theme 45.0-1 install ok installed apt apt 2.7.6 install ok installed at-spi2-common at-spi2-common 2.50.0-1 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b5 install ok installed binutils binutils 2.41-5 install ok installed binutils-common:amd64 binutils-common 2.41-5 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.41-5 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.39.2-2 install ok installed ca-certificates ca-certificates 20230311 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:13.2.0-1 install ok installed cpp-13 cpp-13 13.2.0-4 install ok installed dash dash 0.5.12-6 install ok installed dbus dbus 1.14.10-1 install ok installed dbus-bin dbus-bin 1.14.10-1 install ok installed dbus-daemon dbus-daemon 1.14.10-1 install ok installed dbus-session-bus-common dbus-session-bus-common 1.14.10-1 install ok installed dbus-system-bus-common dbus-system-bus-common 1.14.10-1 install ok installed dbus-user-session dbus-user-session 1.14.10-1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.40.0-4 install ok installed dconf-service dconf-service 0.40.0-4 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.13 install ok installed diffutils diffutils 1:3.8-4 install ok installed dmsetup dmsetup 2:1.02.185-2 install ok installed dpkg dpkg 1.22.0 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig fontconfig 2.14.2-6 install ok installed fontconfig-config fontconfig-config 2.14.2-6 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-lyx fonts-lyx 2.3.7-1 install ok installed g++ g++ 4:13.2.0-1 install ok installed g++-13 g++-13 13.2.0-4 install ok installed gcc gcc 4:13.2.0-1 install ok installed gcc-13 gcc-13 13.2.0-4 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-4 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.38-5 install ok installed gzip gzip 1.12-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libaec0:amd64 libaec0 1.1.1-1 install ok installed libann-cctbx-dev libann-cctbx-dev 1.1.2+doc-9+b1 install ok installed libann-cctbx0 libann-cctbx0 1.1.2+doc-9+b1 install ok installed libantlr3c-3.4-0:amd64 libantlr3c-3.4-0 3.4+dfsg-4 install ok installed libapparmor1:amd64 libapparmor1 3.0.12-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.6 install ok installed libargon2-1:amd64 libargon2-1 0~20190702+dfsg-3 install ok installed libasan8:amd64 libasan8 13.2.0-4 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.50.0-1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.50.0-1 install ok installed libatomic1:amd64 libatomic1 13.2.0-4 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.50.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-11 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-11 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-11 install ok installed libbinutils:amd64 libbinutils 2.41-5 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.39.2-2 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost-numpy1.74.0 libboost-numpy1.74.0 1.74.0+ds1-22 install ok installed libboost-python-dev libboost-python-dev 1.74.0.3 install ok installed libboost-python1.74-dev libboost-python1.74-dev 1.74.0+ds1-22 install ok installed libboost-python1.74.0 libboost-python1.74.0 1.74.0+ds1-22 install ok installed libboost-thread1.74.0:amd64 libboost-thread1.74.0 1.74.0+ds1-22 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0+ds1-22 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd0:amd64 libbsd0 0.11.7-4 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-12 install ok installed libc-dev-bin libc-dev-bin 2.37-12 install ok installed libc6:amd64 libc6 2.37-12 install ok installed libc6-dev:amd64 libc6-dev 2.37-12 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.18.0-1 install ok installed libcairo2:amd64 libcairo2 1.18.0-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcbf1:amd64 libcbf1 0.9.7+dfsg1-2+b2 install ok installed libcc1-0:amd64 libcc1-0 13.2.0-4 install ok installed libccp4-data libccp4-data 8.0.0-2 install ok installed libccp4-dev:amd64 libccp4-dev 8.0.0-2 install ok installed libccp4c0:amd64 libccp4c0 8.0.0-2 install ok installed libccp4f0:amd64 libccp4f0 8.0.0-2 install ok installed libcctbx-dev libcctbx-dev 2022.9+ds2+~3.11.2+ds1-6+b1 install ok installed libcctbx0 libcctbx0 2022.9+ds2+~3.11.2+ds1-6+b1 install ok installed libcloudproviders0:amd64 libcloudproviders0 0.3.4-1 install ok installed libcolord2:amd64 libcolord2 1.4.6-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libcryptsetup12:amd64 libcryptsetup12 2:2.6.1-5 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.41-5 install ok installed libctf0:amd64 libctf0 2.41-5 install ok installed libcups2:amd64 libcups2 2.4.2-6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.3.0-2 install ok installed libcurl4:amd64 libcurl4 8.3.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-2 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-1 install ok installed libdconf1:amd64 libdconf1 0.40.0-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libdeflate0:amd64 libdeflate0 1.18-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.185-2 install ok installed libdouble-conversion3:amd64 libdouble-conversion3 3.3.0-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.115-1 install ok installed libdrm-common libdrm-common 2.4.115-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.115-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.115-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.115-1 install ok installed libdrm2:amd64 libdrm2 2.4.115-1 install ok installed libedit2:amd64 libedit2 3.1-20230828-1 install ok installed libegl-mesa0:amd64 libegl-mesa0 23.2.1-1 install ok installed libegl1:amd64 libegl1 1.6.0-1 install ok installed libelf1:amd64 libelf1 0.189-4 install ok installed libepoxy0:amd64 libepoxy0 1.5.10-1 install ok installed libevdev2:amd64 libevdev2 1.13.1+dfsg-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-2 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-2 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libfdisk1:amd64 libfdisk1 2.39.2-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.2-6 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3 install ok installed libgbm1:amd64 libgbm1 23.2.1-1 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-4 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.10+dfsg-1+b1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.10+dfsg-1 install ok installed libgfortran5:amd64 libgfortran5 13.2.0-4 install ok installed libgl1:amd64 libgl1 1.6.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 23.2.1-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 23.2.1-1 install ok installed libglew2.2:amd64 libglew2.2 2.2.0-4+b1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.0-2 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.2-1.1 install ok installed libglvnd0:amd64 libglvnd0 1.6.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 23.2.1-1 install ok installed libglx0:amd64 libglx0 1.6.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgomp1:amd64 libgomp1 13.2.0-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-2 install ok installed libgprofng0:amd64 libgprofng0 2.41-5 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-4 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.24.38-5 install ok installed libgtk-3-common libgtk-3-common 3.24.38-5 install ok installed libgudev-1.0-0:amd64 libgudev-1.0-0 238-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.0.1-1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-2 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.10+repack-2 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libhwasan0:amd64 libhwasan0 13.2.0-4 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libinput-bin libinput-bin 1.23.0-2 install ok installed libinput10:amd64 libinput10 1.23.0-2 install ok installed libip4tc2:amd64 libip4tc2 1.8.9-2 install ok installed libisl23:amd64 libisl23 0.26-3 install ok installed libitm1:amd64 libitm1 13.2.0-4 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-7 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libjson-c5:amd64 libjson-c5 0.17-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkmod2:amd64 libkmod2 30+20230601-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-4 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-3 install ok installed libllvm16:amd64 libllvm16 1:16.0.6-15 install ok installed liblsan0:amd64 liblsan0 13.2.0-4 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.4-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmd4c0:amd64 libmd4c0 0.4.8-1 install ok installed libmmdb2-0:amd64 libmmdb2-0 2.0.22-1 install ok installed libmount1:amd64 libmount1 2.39.2-2 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1 install ok installed libmtdev1:amd64 libmtdev1 1.1.6-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20230625-2 install ok installed libnetcdf19:amd64 libnetcdf19 1:4.9.2-2 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.56.0-1 install ok installed libnotify4:amd64 libnotify4 0.8.2-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.24+ds-1 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.24+ds-1 install ok installed libopenblas0:amd64 libopenblas0 0.3.24+ds-1 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.24+ds-1 install ok installed libopengl0:amd64 libopengl0 1.6.0-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-7 install ok installed libpam-runtime libpam-runtime 1.5.2-7 install ok installed libpam-systemd:amd64 libpam-systemd 254.5-1 install ok installed libpam0g:amd64 libpam0g 1.5.2-7 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.51.0+ds-2 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.51.0+ds-2 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.51.0+ds-2 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-2 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.42-4 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.42-4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.40-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.3-1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.4-5+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.4-5+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.4-5+b1 install ok installed libpython3.11:amd64 libpython3.11 3.11.6-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.6-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.6-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6 install ok installed libqt5core5a:amd64 libqt5core5a 5.15.10+dfsg-3 install ok installed libqt5dbus5:amd64 libqt5dbus5 5.15.10+dfsg-3 install ok installed libqt5designer5:amd64 libqt5designer5 5.15.10-5 install ok installed libqt5gui5:amd64 libqt5gui5 5.15.10+dfsg-3 install ok installed libqt5help5:amd64 libqt5help5 5.15.10-5 install ok installed libqt5network5:amd64 libqt5network5 5.15.10+dfsg-3 install ok installed libqt5opengl5:amd64 libqt5opengl5 5.15.10+dfsg-3 install ok installed libqt5printsupport5:amd64 libqt5printsupport5 5.15.10+dfsg-3 install ok installed libqt5sql5:amd64 libqt5sql5 5.15.10+dfsg-3 install ok installed libqt5test5:amd64 libqt5test5 5.15.10+dfsg-3 install ok installed libqt5widgets5:amd64 libqt5widgets5 5.15.10+dfsg-3 install ok installed libqt5xml5:amd64 libqt5xml5 5.15.10+dfsg-3 install ok installed libquadmath0:amd64 libquadmath0 13.2.0-4 install ok installed libraqm0:amd64 libraqm0 0.10.1-1 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-3 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-3 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsensors-config libsensors-config 1:3.6.0-8 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-8 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsframe1:amd64 libsframe1 2.41-5 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.3 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.43.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-2 install ok installed libssl3:amd64 libssl3 3.0.11-1 install ok installed libssm2:amd64 libssm2 1.4.0-2 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-4 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-4 install ok installed libsystemd-shared:amd64 libsystemd-shared 254.5-1 install ok installed libsystemd0:amd64 libsystemd0 254.5-1 install ok installed libsz2:amd64 libsz2 1.1.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-1 install ok installed libtinfo6:amd64 libtinfo6 6.4+20230625-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2 install ok installed libtsan2:amd64 libtsan2 13.2.0-4 install ok installed libubsan1:amd64 libubsan1 13.2.0-4 install ok installed libudev1:amd64 libudev1 254.5-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-2 install ok installed libwacom-common libwacom-common 2.8.0-1 install ok installed libwacom9:amd64 libwacom9 2.8.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.22.0-2.1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.22.0-2.1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.22.0-2.1 install ok installed libwayland-server0:amd64 libwayland-server0 1.22.0-2.1 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.3 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.3 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.3 install ok installed libwxbase3.2-1:amd64 libwxbase3.2-1 3.2.2+dfsg-4 install ok installed libwxgtk-gl3.2-1:amd64 libwxgtk-gl3.2-1 3.2.2+dfsg-4 install ok installed libwxgtk3.2-1:amd64 libwxgtk3.2-1 3.2.2+dfsg-4 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.15-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.15-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.15-1 install ok installed libxcb-icccm4:amd64 libxcb-icccm4 0.4.1-1.1 install ok installed libxcb-image0:amd64 libxcb-image0 0.4.0-2 install ok installed libxcb-keysyms1:amd64 libxcb-keysyms1 0.4.0-1+b2 install ok installed libxcb-present0:amd64 libxcb-present0 1.15-1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.15-1 install ok installed libxcb-render-util0:amd64 libxcb-render-util0 0.3.9-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.15-1 install ok installed libxcb-util1:amd64 libxcb-util1 0.4.0-1+b1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.15-1 install ok installed libxcb-xinerama0:amd64 libxcb-xinerama0 1.15-1 install ok installed libxcb-xinput0:amd64 libxcb-xinput0 1.15-1 install ok installed libxcb-xkb1:amd64 libxcb-xkb1 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.1-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxi6:amd64 libxi6 2:1.8-1+b1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3 install ok installed libxkbcommon-x11-0:amd64 libxkbcommon-x11-0 1.5.0-1 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.5.0-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.2-2+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxsimd-dev:amd64 libxsimd-dev 10.0.0-3 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.5.3-1 install ok installed login login 1:4.13+dfsg1-2 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20230808-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.2-2 install ok installed ncurses-base ncurses-base 6.4+20230625-2 install ok installed ncurses-bin ncurses-bin 6.4+20230625-2 install ok installed openssl openssl 3.0.11-1 install ok installed passwd passwd 1:4.13+dfsg1-2 install ok installed perl-base perl-base 5.36.0-9 install ok installed procps procps 2:4.0.3-1 install ok installed pymol-data pymol-data 2.5.0+dfsg-1 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python3 python3 3.11.4-5+b1 install ok installed python3-all python3-all 3.11.4-5+b1 install ok installed python3-all-dev python3-all-dev 3.11.4-5+b1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 23.1.0-2 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-brotli python3-brotli 1.0.9-2+b6 install ok installed python3-cctbx python3-cctbx 2022.9+ds2+~3.11.2+ds1-6+b1 install ok installed python3-certifi python3-certifi 2023.7.22-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.2.0-1 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b1 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dev python3-dev 3.11.4-5+b1 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-fonttools python3-fonttools 4.38.0-1+b1 install ok installed python3-fs python3-fs 2.4.16-2 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-idna python3-idna 3.3-2 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-lxml:amd64 python3-lxml 4.9.3-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b2 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b1 install ok installed python3-minimal python3-minimal 3.11.4-5+b1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-mrcfile python3-mrcfile 1.4.3-3 install ok installed python3-numpy python3-numpy 1:1.24.2-1 install ok installed python3-opengl python3-opengl 3.1.6+dfsg-4 install ok installed python3-packaging python3-packaging 23.1-1 install ok installed python3-pil:amd64 python3-pil 10.0.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.0.0-1 install ok installed python3-pint python3-pint 0.19.2-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-procrunner python3-procrunner 1.1.0-1+b1 install ok installed python3-pycbf python3-pycbf 0.9.7+dfsg1-2+b2 install ok installed python3-pymol python3-pymol 2.5.0+dfsg-1+b3 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-pyqt5 python3-pyqt5 5.15.9+dfsg-2 install ok installed python3-pyqt5.qtopengl python3-pyqt5.qtopengl 5.15.9+dfsg-2 install ok installed python3-pyqt5.sip python3-pyqt5.sip 12.12.2-1 install ok installed python3-pythran python3-pythran 0.14.0+ds-2 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-scipy python3-scipy 1.10.1-2 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-sympy python3-sympy 1.12-6 install ok installed python3-tk:amd64 python3-tk 3.11.5-1 install ok installed python3-tqdm python3-tqdm 4.64.1-1 install ok installed python3-tz python3-tz 2023.3.post1-1 install ok installed python3-ufolib2 python3-ufolib2 0.14.0+dfsg1-1 install ok installed python3-urllib3 python3-urllib3 1.26.16-1 install ok installed python3-wxgtk4.0 python3-wxgtk4.0 4.2.1+dfsg-1 install ok installed python3.11 python3.11 3.11.6-1 install ok installed python3.11-dev python3.11-dev 3.11.6-1 install ok installed python3.11-minimal python3.11-minimal 3.11.6-1 install ok installed readline-common readline-common 8.2-1.3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed shared-mime-info shared-mime-info 2.2-1 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 1.3.0+dfsg-1 install ok installed systemd systemd 254.5-1 install ok installed systemd-dev systemd-dev 254.5-1 install ok installed systemd-sysv systemd-sysv 254.5-1 install ok installed sysvinit-utils sysvinit-utils 3.08-1 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2023c-10 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 37 install ok installed util-linux util-linux 2.39.2-2 install ok installed x11-common x11-common 1:7.7+23 install ok installed xkb-data xkb-data 2.38-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-3 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-3 2m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-13', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dmsetup', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'g++-', 'g++-13', 'gcc', 'gcc-13', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-numpy1.74.0', 'libboost-python-dev', 'libboost-python1.74-dev', 'libboost-python1.74.0', 'libboost-thread1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1:amd64', 'libcc1-0:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0:amd64', 'libccp4f0:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfdisk1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-13-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm16:amd64', 'liblsan0:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncursesw6:amd64', 'libnetcdf19:amd64', 'libnghttp2-14:amd64', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5designer5:amd64', 'libqt5gui5:amd64', 'libqt5help5:amd64', 'libqt5network5:amd64', 'libqt5opengl5:amd64', 'libqt5printsupport5:amd64', 'libqt5sql5:amd64', 'libqt5test5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssm2:amd64', 'libstdc++-13-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk-gl3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-mrcfile', 'python3-numpy', 'python3-opengl', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-ply', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-dev', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64', 'python3-cctbx'] 2m51.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser adwaita-icon-theme at-spi2-common binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-13 dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service dmsetup fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx g++ g++-13 gcc gcc-13 gtk-update-icon-cache hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libapparmor1 libargon2-1 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbinutils libblas3 libboost-dev libboost-numpy1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcbf1 libcc1-0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcctbx-dev libcctbx0 libcloudproviders0 libcolord2 libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 libevdev2 libexpat1 libexpat1-dev libfdisk1 libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-13-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwasan0 libice6 libicu72 libimagequant0 libinput-bin libinput10 libip4tc2 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm16 liblsan0 libmd4c0 libmmdb2-0 libmpc3 libmpfr6 libmtdev1 libncursesw6 libnetcdf19 libnghttp2-14 libnotify4 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopengl0 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsframe1 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1 libssl3 libssm2 libstdc++-13-dev libsystemd-shared libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk-gl3.2-1 libwxgtk3.2-1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxsimd-dev libxslt1.1 libxss1 libxtst6 libxxf86vm1 libz3-4 linux-libc-dev media-types openssl procps pymol-data python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-beniget python3-brotli python3-cctbx python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-gast python3-idna python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-mrcfile python3-numpy python3-opengl python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pkg-resources python3-ply python3-procrunner python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-pythran python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3-wxgtk4.0 python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto shared-mime-info sphinx-rtd-theme-common systemd systemd-dev systemd-sysv tk8.6-blt2.5 unicode-data x11-common xkb-data zlib1g-dev 0 upgraded, 0 newly installed, 363 to remove and 0 not upgraded. After this operation, 1696 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52237 files and directories currently installed.) Removing python3-cctbx (2022.9+ds2+~3.11.2+ds1-6+b1) ... Removing python3-wxgtk4.0 (4.2.1+dfsg-1) ... Removing libwxgtk-gl3.2-1:amd64 (3.2.2+dfsg-4) ... Removing libwxgtk3.2-1:amd64 (3.2.2+dfsg-4) ... Removing libgtk-3-0:amd64 (3.24.38-5) ... Removing libgtk-3-common (3.24.38-5) ... Removing dconf-gsettings-backend:amd64 (0.40.0-4) ... Removing dconf-service (0.40.0-4) ... Removing dbus-user-session (1.14.10-1) ... Removing libpam-systemd:amd64 (254.5-1) ... Removing dbus (1.14.10-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-system-bus-common (1.14.10-1) ... Removing adduser (3.137) ... Removing adwaita-icon-theme (45.0-1) ... Removing libatk-bridge2.0-0:amd64 (2.50.0-1) ... Removing libatk1.0-0:amd64 (2.50.0-1) ... Removing at-spi2-common (2.50.0-1) ... Removing python3-matplotlib (3.6.3-1+b1) ... Removing g++ (4:13.2.0-1) ... Removing gcc (4:13.2.0-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.7.22-1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:13.2.0-1) ... Removing dbus-daemon (1.14.10-1) ... Removing dbus-bin (1.14.10-1) ... Removing dbus-session-bus-common (1.14.10-1) ... Removing systemd-sysv (254.5-1) ... Removing systemd (254.5-1) ... Removing libcryptsetup12:amd64 (2:2.6.1-5) ... Removing libpangocairo-1.0-0:amd64 (1.51.0+ds-2) ... Removing libpangoft2-1.0-0:amd64 (1.51.0+ds-2) ... Removing libpango-1.0-0:amd64 (1.51.0+ds-2) ... Removing python3-pymol (2.5.0+dfsg-1+b3) ... Removing python3-pyqt5.qtopengl (5.15.9+dfsg-2) ... Removing python3-pyqt5 (5.15.9+dfsg-2) ... Removing libqt5help5:amd64 (5.15.10-5) ... Removing libcairo-gobject2:amd64 (1.18.0-1) ... Removing libcairo2:amd64 (1.18.0-1) ... Removing python-matplotlib-data (3.6.3-1) ... Removing python3-mrcfile (1.4.3-3) ... Removing sphinx-rtd-theme-common (1.3.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-lyx (2.3.7-1) ... Removing gtk-update-icon-cache (3.24.38-5) ... Removing hicolor-icon-theme (0.17-2) ... Removing libnetcdf19:amd64 (1:4.9.2-2) ... Removing libhdf5-hl-100:amd64 (1.10.10+repack-2) ... Removing libcctbx-dev (2022.9+ds2+~3.11.2+ds1-6+b1) ... Removing libann-cctbx-dev (1.1.2+doc-9+b1) ... Removing libcctbx0 (2022.9+ds2+~3.11.2+ds1-6+b1) ... Removing libann-cctbx0 (1.1.2+doc-9+b1) ... Removing libantlr3c-3.4-0:amd64 (3.4+dfsg-4) ... Removing libsystemd-shared:amd64 (254.5-1) ... Removing libapparmor1:amd64 (3.0.12-1) ... Removing libargon2-1:amd64 (0~20190702+dfsg-3) ... Removing libboost-python-dev (1.74.0.3) ... Removing libboost-python1.74-dev (1.74.0+ds1-22) ... Removing libatspi2.0-0:amd64 (2.50.0-1) ... Removing libqt5printsupport5:amd64 (5.15.10+dfsg-3) ... Removing libcups2:amd64 (2.4.2-6) ... Removing libavahi-client3:amd64 (0.8-11) ... Removing libavahi-common3:amd64 (0.8-11) ... Removing libavahi-common-data:amd64 (0.8-11) ... Removing python3-contourpy (1.0.7-1+b1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libboost-numpy1.74.0 (1.74.0+ds1-22) ... Removing libboost-python1.74.0 (1.74.0+ds1-22) ... Removing libboost-thread1.74.0:amd64 (1.74.0+ds1-22) ... Removing python3-pycbf (0.9.7+dfsg1-2+b2) ... Removing libcbf1:amd64 (0.9.7+dfsg1-2+b2) ... Removing libccp4-dev:amd64 (8.0.0-2) ... Removing libccp4f0:amd64 (8.0.0-2) ... Removing libccp4c0:amd64 (8.0.0-2) ... Removing libccp4-data (8.0.0-2) ... Removing libcloudproviders0:amd64 (0.3.4-1) ... Removing libcolord2:amd64 (1.4.6-3) ... Removing libcurl3-gnutls:amd64 (8.3.0-2) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libdconf1:amd64 (0.40.0-4) ... Removing libnotify4:amd64 (0.8.2-1) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... Removing libqt5designer5:amd64 (5.15.10-5) ... Removing libqt5xml5:amd64 (5.15.10+dfsg-3) ... Removing libqt5opengl5:amd64 (5.15.10+dfsg-3) ... Removing libqt5widgets5:amd64 (5.15.10+dfsg-3) ... Removing libqt5test5:amd64 (5.15.10+dfsg-3) ... Removing python3-opengl (3.1.6+dfsg-4) ... Removing libglew2.2:amd64 (2.2.0-4+b1) ... Removing libepoxy0:amd64 (1.5.10-1) ... Removing libwxbase3.2-1:amd64 (3.2.2+dfsg-4) ... Removing python3-tqdm (4.64.1-1) ... Removing libfdisk1:amd64 (2.39.2-2) ... Removing libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Removing libopenblas-dev:amd64 (0.3.24+ds-1) ... Removing libopenblas0:amd64 (0.3.24+ds-1) ... Removing libglu1-mesa:amd64 (9.0.2-1.1) ... Removing libopengl0:amd64 (1.6.0-1) ... Removing libip4tc2:amd64 (1.8.9-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjson-c5:amd64 (0.17-1) ... Removing libkmod2:amd64 (30+20230601-2) ... Removing libssm2:amd64 (1.4.0-2) ... Removing libmmdb2-0:amd64 (2.0.22-1) ... Removing procps (2:4.0.3-1) ... Removing libpcre2-32-0:amd64 (10.42-4) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libproc2-0:amd64 (2:4.0.3-1) ... Removing libqhull-r8.0:amd64 (2020.2-6) ... Removing libqt5sql5:amd64 (5.15.10+dfsg-3) ... Removing openssl (3.0.11-1) ... Removing libthai-data (0.1.29-1) ... Removing libwayland-cursor0:amd64 (1.22.0-2.1) ... Removing libwayland-egl1:amd64 (1.22.0-2.1) ... Removing libxtst6:amd64 (2:1.2.3-1.1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.1-1) ... Removing libxdamage1:amd64 (1:1.1.6-1) ... Removing libxi6:amd64 (2:1.8-1+b1) ... Removing libxinerama1:amd64 (2:1.1.4-3) ... Removing libxrandr2:amd64 (2:1.5.2-2+b1) ... Removing pymol-data (2.5.0+dfsg-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.2.0-1) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-idna (3.3-2) ... Removing python3-kiwisolver (1.4.4-1+b1) ... Removing python3-packaging (23.1-1) ... Removing python3-pint (0.19.2-1) ... Removing python3-procrunner (1.1.0-1+b1) ... Removing python3-pyparsing (3.1.1-1) ... Removing python3-pyqt5.sip (12.12.2-1) ... Removing python3-urllib3 (1.26.16-1) ... Removing systemd-dev (254.5-1) ... Removing libqt5gui5:amd64 (5.15.10+dfsg-3) ... Removing fontconfig (2.14.2-6) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-2) ... Removing libsz2:amd64 (1.1.1-1) ... Removing libaec0:amd64 (1.1.1-1) ... Removing libcurl4:amd64 (8.3.0-2) ... Removing libxcb-icccm4:amd64 (0.4.1-1.1) ... Removing libxcb-render-util0:amd64 (0.3.9-1+b1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libqt5network5:amd64 (5.15.10+dfsg-3) ... Removing libqt5dbus5:amd64 (5.15.10+dfsg-3) ... Removing libdbus-1-3:amd64 (1.14.10-1) ... Removing libqt5core5a:amd64 (5.15.10+dfsg-3) ... Removing libdouble-conversion3:amd64 (3.3.0-1) ... Removing libgl1:amd64 (1.6.0-1) ... Removing libglx0:amd64 (1.6.0-1) ... Removing libglx-mesa0:amd64 (23.2.1-1) ... Removing libgl1-mesa-dri:amd64 (23.2.1-1) ... Removing libdrm-amdgpu1:amd64 (2.4.115-1) ... Removing libegl1:amd64 (1.6.0-1) ... Removing libegl-mesa0:amd64 (23.2.1-1) ... Removing libgbm1:amd64 (23.2.1-1) ... Removing libdrm-intel1:amd64 (2.4.115-1) ... Removing libdrm-nouveau2:amd64 (2.4.115-1) ... Removing libdrm-radeon1:amd64 (2.4.115-1) ... Removing libllvm16:amd64 (1:16.0.6-15) ... Removing libedit2:amd64 (3.1-20230828-1) ... Removing libelf1:amd64 (0.189-4) ... Removing libinput10:amd64 (1.23.0-2) ... Removing libinput-bin (1.23.0-2) ... Removing libevdev2:amd64 (1.13.1+dfsg-1) ... Removing libglapi-mesa:amd64 (23.2.1-1) ... Removing shared-mime-info (2.2-1) ... Removing libwacom9:amd64 (2.8.0-1) ... Removing libglvnd0:amd64 (1.6.0-1) ... Removing libgudev-1.0-0:amd64 (238-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libmd4c0:amd64 (0.4.8-1) ... Removing libmtdev1:amd64 (1.1.6-1) ... Removing libnghttp2-14:amd64 (1.56.0-1) ... Removing libpciaccess0:amd64 (0.17-2) ... Removing libpcre2-16-0:amd64 (10.42-4) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-3) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-3) ... Removing libsensors5:amd64 (1:3.6.0-8) ... Removing libsensors-config (1:3.6.0-8) ... Removing libssh2-1:amd64 (1.11.0-2) ... Removing libwacom-common (2.8.0-1) ... Removing libwayland-client0:amd64 (1.22.0-2.1) ... Removing libwayland-server0:amd64 (1.22.0-2.1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libx11-xcb1:amd64 (2:1.8.7-1) ... Removing libxcb-dri2-0:amd64 (1.15-1) ... Removing libxcb-dri3-0:amd64 (1.15-1) ... Removing libxcb-glx0:amd64 (1.15-1) ... Removing libxcb-image0:amd64 (0.4.0-2) ... Removing libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Removing libxcb-present0:amd64 (1.15-1) ... Removing libxcb-randr0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxcb-shape0:amd64 (1.15-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-sync1:amd64 (1.15-1) ... Removing libxcb-util1:amd64 (0.4.0-1+b1) ... Removing libxcb-xfixes0:amd64 (1.15-1) ... Removing libxcb-xinerama0:amd64 (1.15-1) ... Removing libxcb-xinput0:amd64 (1.15-1) ... Removing libxkbcommon-x11-0:amd64 (1.5.0-1) ... Removing libxcb-xkb1:amd64 (1.15-1) ... Removing libxfixes3:amd64 (1:6.0.0-2) ... Removing libxkbcommon0:amd64 (1.5.0-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libz3-4:amd64 (4.8.12-3.1) ... Removing xkb-data (2.38-2) ... Removing libdrm2:amd64 (2.4.115-1) ... Removing libdrm-common (2.4.115-1) ... Removing python3-ufolib2 (0.14.0+dfsg1-1) ... Removing python3-pil:amd64 (10.0.0-1) ... Removing dmsetup (2:1.02.185-2) ... Removing libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Removing libraqm0:amd64 (0.10.1-1) ... Removing libharfbuzz0b:amd64 (8.0.1-1) ... Removing libtiff6:amd64 (4.5.1+git230720-1) ... Removing libdeflate0:amd64 (1.18-1) ... Removing libfribidi0:amd64 (1.0.13-3) ... Removing libglib2.0-0:amd64 (2.78.0-2) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing liblerc4:amd64 (4.0.0+ds-3) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libwebpmux3:amd64 (1.3.2-0.3) ... Removing libwebpdemux2:amd64 (1.3.2-0.3) ... Removing libwebp7:amd64 (1.3.2-0.3) ... Removing libsharpyuv0:amd64 (1.3.2-0.3) ... Removing python3-attr (23.1.0-2) ... Removing python3-fonttools (4.38.0-1+b1) ... Removing python3-scipy (1.10.1-2) ... Removing python3-pythran (0.14.0+ds-2) ... Removing python3-pil.imagetk:amd64 (10.0.0-1) ... Removing python3-tk:amd64 (3.11.5-1) ... Removing blt (2.5.3+dfsg-4.1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.13-2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libfontconfig1:amd64 (2.14.2-6) ... Removing fontconfig-config (2.14.2-6) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing g++-13 (13.2.0-4) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0+ds1-22) ... Removing libstdc++-13-dev:amd64 (13.2.0-4) ... Removing python3-numpy (1:1.24.2-1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing python3-all-dev (3.11.4-5+b1) ... Removing python3-dev (3.11.4-5+b1) ... Removing python3.11-dev (3.11.6-1) ... Removing libpython3-all-dev:amd64 (3.11.4-5+b1) ... Removing libpython3-dev:amd64 (3.11.4-5+b1) ... Removing libpython3.11-dev:amd64 (3.11.6-1) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-3) ... Removing libexpat1-dev:amd64 (2.5.0-2) ... Removing libc6-dev:amd64 (2.37-12) ... Removing libc-dev-bin (2.37-12) ... Removing libcrypt-dev:amd64 (1:4.4.36-2) ... Removing python3-all (3.11.4-5+b1) ... Removing python3-distutils (3.11.5-1) ... Removing libopenblas-pthread-dev:amd64 (0.3.24+ds-1) ... Removing libopenblas0-pthread:amd64 (0.3.24+ds-1) ... Removing libgfortran5:amd64 (13.2.0-4) ... Removing libpython3.11:amd64 (3.11.6-1) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing python3-lxml:amd64 (4.9.3-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3) ... Removing libicu72:amd64 (72.1-3) ... Removing libjs-sphinxdoc (5.3.0-7) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libpng16-16:amd64 (1.6.40-1) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxsimd-dev:amd64 (10.0.0-3) ... Removing linux-libc-dev:amd64 (6.5.3-1) ... Removing python3-fs (2.4.16-2) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-beniget (0.4.1-3) ... Removing python3-brotli (1.0.9-2+b6) ... Removing python3-decorator (5.1.1-5) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-lz4 (4.0.2+dfsg-1+b2) ... Removing python3-sympy (1.12-6) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-ply (3.11-5) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2023.3.post1-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing unicode-data (15.1.0-1) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing gcc-13 (13.2.0-4) ... Removing binutils (2.41-5) ... Removing binutils-x86-64-linux-gnu (2.41-5) ... Removing libgprofng0:amd64 (2.41-5) ... Removing libctf0:amd64 (2.41-5) ... Removing libbinutils:amd64 (2.41-5) ... Removing binutils-common:amd64 (2.41-5) ... Removing cpp-13 (13.2.0-4) ... Removing libgcc-13-dev:amd64 (13.2.0-4) ... Removing libasan8:amd64 (13.2.0-4) ... Removing libatomic1:amd64 (13.2.0-4) ... Removing libcc1-0:amd64 (13.2.0-4) ... Removing libctf-nobfd0:amd64 (2.41-5) ... Removing python3 (3.11.4-5+b1) ... Removing python3.11 (3.11.6-1) ... Removing libgomp1:amd64 (13.2.0-4) ... Removing libpython3-stdlib:amd64 (3.11.4-5+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libhwasan0:amd64 (13.2.0-4) ... Removing libisl23:amd64 (0.26-3) ... Removing libitm1:amd64 (13.2.0-4) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (13.2.0-4) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.2.1-1) ... Removing libncursesw6:amd64 (6.4+20230625-2) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libquadmath0:amd64 (13.2.0-4) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing libsframe1:amd64 (2.41-5) ... Removing libsqlite3-0:amd64 (3.43.1-1) ... Removing libtsan2:amd64 (13.2.0-4) ... Removing libubsan1:amd64 (13.2.0-4) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libx11-data (2:1.8.7-1) ... Removing media-types (10.1.0) ... Removing python3-minimal (3.11.4-5+b1) ... Removing readline-common (8.2-1.3) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-4) ... Removing python3.11-minimal (3.11.6-1) ... Removing libexpat1:amd64 (2.5.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-4) ... Removing libkrb5-3:amd64 (1.20.1-4) ... Removing libk5crypto3:amd64 (1.20.1-4) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-4) ... Removing libpython3.11-minimal:amd64 (3.11.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libssl3:amd64 (3.0.11-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Processing triggers for libc-bin (2.37-12) ... 2m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-13', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dmsetup', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'g++-', 'g++-13', 'gcc', 'gcc-13', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-numpy1.74.0', 'libboost-python-dev', 'libboost-python1.74-dev', 'libboost-python1.74.0', 'libboost-thread1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1:amd64', 'libcc1-0:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0:amd64', 'libccp4f0:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfdisk1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-13-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm16:amd64', 'liblsan0:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncursesw6:amd64', 'libnetcdf19:amd64', 'libnghttp2-14:amd64', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5designer5:amd64', 'libqt5gui5:amd64', 'libqt5help5:amd64', 'libqt5network5:amd64', 'libqt5opengl5:amd64', 'libqt5printsupport5:amd64', 'libqt5sql5:amd64', 'libqt5test5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssm2:amd64', 'libstdc++-13-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk-gl3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-mrcfile', 'python3-numpy', 'python3-opengl', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-ply', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-dev', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64', 'python3-cctbx'] 2m51.1s INFO: Running scripts post_remove 2m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_remove_exceptions'] 2m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_remove_exceptions'] 2m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-13', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dmsetup', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'g++', 'g++-13', 'gcc', 'gcc-13', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-numpy1.74.0', 'libboost-python-dev', 'libboost-python1.74-dev', 'libboost-python1.74.0', 'libboost-thread1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1:amd64', 'libcc1-0:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0:amd64', 'libccp4f0:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfdisk1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-13-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm16:amd64', 'liblsan0:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncursesw6:amd64', 'libnetcdf19:amd64', 'libnghttp2-14:amd64', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5designer5:amd64', 'libqt5gui5:amd64', 'libqt5help5:amd64', 'libqt5network5:amd64', 'libqt5opengl5:amd64', 'libqt5printsupport5:amd64', 'libqt5sql5:amd64', 'libqt5test5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssm2:amd64', 'libstdc++-13-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk-gl3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-mrcfile', 'python3-numpy', 'python3-opengl', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-ply', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-dev', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64'] 2m51.8s DUMP: (Reading database ... 5281 files and directories currently installed.) Purging configuration files for adduser (3.137) ... Purging configuration files for adwaita-icon-theme (45.0-1) ... dpkg: warning: ignoring request to remove at-spi2-common which isn't installed dpkg: warning: ignoring request to remove binutils which isn't installed Purging configuration files for binutils-common:amd64 (2.41-5) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-13 which isn't installed Purging configuration files for dbus (1.14.10-1) ... rmdir: failed to remove '/var/run/dbus': Directory not empty rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.14.10-1) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed Purging configuration files for dbus-user-session (1.14.10-1) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove dmsetup which isn't installed Purging configuration files for fontconfig (2.14.2-6) ... Purging configuration files for fontconfig-config (2.14.2-6) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-13 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-13 which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libann-cctbx-dev which isn't installed dpkg: warning: ignoring request to remove libann-cctbx0 which isn't installed dpkg: warning: ignoring request to remove libantlr3c-3.4-0 which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libargon2-1 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libatspi2.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost-numpy1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-python-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.74-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-thread1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcbf1 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libccp4-data which isn't installed dpkg: warning: ignoring request to remove libccp4-dev which isn't installed dpkg: warning: ignoring request to remove libccp4c0 which isn't installed dpkg: warning: ignoring request to remove libccp4f0 which isn't installed dpkg: warning: ignoring request to remove libcctbx-dev which isn't installed dpkg: warning: ignoring request to remove libcctbx0 which isn't installed dpkg: warning: ignoring request to remove libcloudproviders0 which isn't installed dpkg: warning: ignoring request to remove libcolord2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-2) ... dpkg: warning: ignoring request to remove libcryptsetup12 which isn't installed dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevmapper1.02.1 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove libevdev2 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfdisk1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (23.2.1-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed dpkg: warning: ignoring request to remove libglew2.2 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.0-2) ... dpkg: warning: ignoring request to remove libglu1-mesa which isn't installed dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-4) ... Purging configuration files for libgtk-3-0:amd64 (3.24.38-5) ... Purging configuration files for libgtk-3-common (3.24.38-5) ... dpkg: warning: ignoring request to remove libgudev-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libinput-bin which isn't installed dpkg: warning: ignoring request to remove libinput10 which isn't installed dpkg: warning: ignoring request to remove libip4tc2 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjson-c5 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkmod2 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm16 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmd4c0 which isn't installed dpkg: warning: ignoring request to remove libmmdb2-0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmtdev1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnetcdf19 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnotify4 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopengl0 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpam-systemd which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-16-0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-32-0 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.6-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libqt5core5a which isn't installed dpkg: warning: ignoring request to remove libqt5dbus5 which isn't installed dpkg: warning: ignoring request to remove libqt5designer5 which isn't installed dpkg: warning: ignoring request to remove libqt5gui5 which isn't installed dpkg: warning: ignoring request to remove libqt5help5 which isn't installed dpkg: warning: ignoring request to remove libqt5network5 which isn't installed dpkg: warning: ignoring request to remove libqt5opengl5 which isn't installed dpkg: warning: ignoring request to remove libqt5printsupport5 which isn't installed dpkg: warning: ignoring request to remove libqt5sql5 which isn't installed dpkg: warning: ignoring request to remove libqt5test5 which isn't installed dpkg: warning: ignoring request to remove libqt5widgets5 which isn't installed dpkg: warning: ignoring request to remove libqt5xml5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-8) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libssm2 which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libsystemd-shared which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwacom-common which isn't installed dpkg: warning: ignoring request to remove libwacom9 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libwxbase3.2-1 which isn't installed dpkg: warning: ignoring request to remove libwxgtk-gl3.2-1 which isn't installed dpkg: warning: ignoring request to remove libwxgtk3.2-1 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-icccm4 which isn't installed dpkg: warning: ignoring request to remove libxcb-image0 which isn't installed dpkg: warning: ignoring request to remove libxcb-keysyms1 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render-util0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-util1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinerama0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinput0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xkb1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon-x11-0 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for openssl (3.0.11-1) ... Purging configuration files for procps (2:4.0.3-1) ... dpkg: warning: ignoring request to remove pymol-data which isn't installed Purging configuration files for python-matplotlib-data (3.6.3-1) ... Purging configuration files for python3 (3.11.4-5+b1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-mrcfile which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-opengl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pint which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-procrunner which isn't installed dpkg: warning: ignoring request to remove python3-pycbf which isn't installed dpkg: warning: ignoring request to remove python3-pymol which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyqt5 which isn't installed dpkg: warning: ignoring request to remove python3-pyqt5.qtopengl which isn't installed dpkg: warning: ignoring request to remove python3-pyqt5.sip which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed Purging configuration files for python3-sympy (1.12-6) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wxgtk4.0 which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.6-1) ... Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for shared-mime-info (2.2-1) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed Purging configuration files for systemd (254.5-1) ... dpkg: warning: ignoring request to remove systemd-dev which isn't installed dpkg: warning: ignoring request to remove systemd-sysv which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xkb-data which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 2m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-13', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dmsetup', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'g++', 'g++-13', 'gcc', 'gcc-13', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-numpy1.74.0', 'libboost-python-dev', 'libboost-python1.74-dev', 'libboost-python1.74.0', 'libboost-thread1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1:amd64', 'libcc1-0:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0:amd64', 'libccp4f0:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfdisk1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-13-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm16:amd64', 'liblsan0:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncursesw6:amd64', 'libnetcdf19:amd64', 'libnghttp2-14:amd64', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5designer5:amd64', 'libqt5gui5:amd64', 'libqt5help5:amd64', 'libqt5network5:amd64', 'libqt5opengl5:amd64', 'libqt5printsupport5:amd64', 'libqt5sql5:amd64', 'libqt5test5:amd64', 'libqt5widgets5:amd64', 'libqt5xml5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssm2:amd64', 'libstdc++-13-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk-gl3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'media-types', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-beniget', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-mrcfile', 'python3-numpy', 'python3-opengl', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-ply', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-dev', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64'] 2m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--purge', 'python3-cctbx'] 2m51.8s DUMP: dpkg: warning: ignoring request to remove python3-cctbx which isn't installed 2m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--purge', 'python3-cctbx'] 2m51.8s INFO: Running scripts post_purge 2m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_purge_exceptions'] 2m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_purge_exceptions'] 2m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--purge', '--pending'] 2m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--purge', '--pending'] 2m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--remove', '--pending'] 2m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg', '--remove', '--pending'] 2m51.8s INFO: Running scripts post_test 2m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_test_exceptions'] 2m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'tmp/scripts/post_test_exceptions'] 2m51.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 2m52.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 2m52.6s ERROR: WARN: Broken symlinks: /etc/vconsole.conf -> default/keyboard /etc/default/locale -> ../locale.conf 2m52.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-divert', '--list'] 2m52.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 2m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'dpkg-divert', '--list'] 2m52.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'clean'] 2m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj', 'apt-get', 'clean'] 2m52.7s DEBUG: Recording chroot state 2m53.2s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/lib/systemd/coredump/ not owned /var/lib/systemd/ephemeral-trees/ not owned /var/lib/systemd/pstore/ not owned /var/log/private/ not owned 2m53.3s INFO: PASS: Installation and purging test. 2m53.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/shm'] 2m53.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/shm'] 2m53.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/console'] 2m53.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/console'] 2m53.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/ptmx'] 2m53.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/ptmx'] 2m53.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/pts'] 2m53.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/dev/pts'] 2m53.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/proc'] 2m53.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj/proc'] 2m53.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 2m53.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1c1cb4wj'] 2m53.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1c1cb4wj 2m53.7s INFO: PASS: All tests. 2m53.7s INFO: piuparts run ends. ret=0 End: 2023-10-05 14:15:25 GMT