Start: 2023-09-20 22:57:00 GMT Package: python3-cobra Source: python-cobra Version: 0.26.3-2 Installed-Size: 1873 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-appdirs (>= 1.4), python3-appdirs (<< 2), python3-depinfo, python3-diskcache, python3-future, python3-httpx, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-pandas, python3-pydantic, python3-rich, python3-ruamel.yaml, python3-swiglpk (>= 5.0.8-1~), python3:any, python-cobra-data (= 0.26.3-2), python3-simplejson, python3-tabulate, python3-sbml5 Suggests: python3-matplotlib, qsopt-ex Description: constraint-based modeling of biological networks with Python 3 Homepage: https://opencobra.github.io/cobrapy/ Description-md5: 0052f98776eccb61924a15b5d6618e25 Section: python Priority: optional Filename: pool/main/p/python-cobra/python3-cobra_0.26.3-2_amd64.deb Size: 1118672 MD5sum: 53d7bb56d467363c534a91076d29bfba SHA256: ef5e5d1f68317851d1453f90ca33f56764640a743a45fba409b3798580ab97ca Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --merged-usr -i /usr/lib32/ -i /usr/libx32/ --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-cobra=0.26.3-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --merged-usr -i /usr/lib32/ -i /usr/libx32/ --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-cobra=0.26.3-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-25-amd64 #1 SMP Debian 5.10.191-1 (2023-08-16) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_2r7m14l 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_2r7m14l 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m2.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/proc'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/proc'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/pts'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/pts'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/ptmx'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/ptmx'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/console'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/console'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/shm'] 0m2.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_2r7m14l/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'update'] 0m6.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [195 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9613 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7030 kB] Fetched 16.8 MB in 4s (4684 kB/s) Reading package lists... 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'update'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', '-yf', 'dist-upgrade'] 0m9.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt debianutils libapt-pkg6.0 libgcrypt20 sysvinit-utils 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3152 kB of archives. After this operation, 5120 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.13 [104 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.2-3 [704 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.6 [949 kB] Get:4 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.6 [1363 kB] Get:5 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-1 [31.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3152 kB in 0s (45.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5203 files and directories currently installed.) Preparing to unpack .../debianutils_5.13_amd64.deb ... Unpacking debianutils (5.13) over (5.12) ... Setting up debianutils (5.13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5203 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.2-3_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.2-3) over (1.10.2-2) ... Setting up libgcrypt20:amd64 (1.10.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5203 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.6_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.7.6) over (2.7.5) ... Setting up libapt-pkg6.0:amd64 (2.7.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5203 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.6_amd64.deb ... Unpacking apt (2.7.6) over (2.7.5) ... Setting up apt (2.7.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5203 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-1_amd64.deb ... Unpacking sysvinit-utils (3.08-1) over (3.07-1) ... Setting up sysvinit-utils (3.08-1) ... Processing triggers for libc-bin (2.37-10) ... 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', '-yf', 'dist-upgrade'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.9s DUMP: ab93f5b2224e4c2d7e06be68adb8c3ff - 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.9s INFO: Running scripts post_setup 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_dummy_users'] 0m12.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_dummy_users'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_forbid_home'] 0m12.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_forbid_home'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m12.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_minimize'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_minimize'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_squeeze-backports'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_squeeze-backports'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_zz_backports'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_setup_zz_backports'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'clean'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'clean'] 0m12.2s DEBUG: Recording chroot state 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.1s DUMP: install ok installed apt apt 2.7.6 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b5 install ok installed bsdutils bsdutils 1:2.39.2-1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.13 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.22.0 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-4 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.6 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libblkid1:amd64 libblkid1 2.39.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-10 install ok installed libc6:amd64 libc6 2.37-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-2 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.4-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.2-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-7 install ok installed libpam-runtime libpam-runtime 1.5.2-7 install ok installed libpam0g:amd64 libpam0g 1.5.2-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 254.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20230625-2 install ok installed libudev1:amd64 libudev1 254.3-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20230808-1 install ok installed mount mount 2.39.2-1 install ok installed ncurses-base ncurses-base 6.4+20230625-2 install ok installed ncurses-bin ncurses-bin 6.4+20230625-2 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-9 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.08-1 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-10 install ok installed usr-is-merged usr-is-merged 37 install ok installed util-linux util-linux 2.39.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-3 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-divert', '--list'] 0m13.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-divert', '--list'] 0m13.1s INFO: Running scripts is_testable 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/is_testable_uninstallable'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/is_testable_uninstallable'] 0m13.1s INFO: apt-cache does not know about any of the requested packages 0m13.1s INFO: Running scripts pre_test 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_test_exceptions'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_test_exceptions'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_test_root_password'] 0m13.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_test_root_password'] 0m13.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 0m13.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 0m14.4s DEBUG: No broken symlinks as far as we can find. 0m14.4s INFO: Running scripts pre_install 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_database-server'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_database-server'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_exceptions'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_extras'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_extras'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 0m15.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 0m15.8s DEBUG: No broken symlinks as far as we can find. 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-cache', 'policy'] 0m16.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-cache', 'policy'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-cache', 'policy', 'python3-cobra'] 0m17.0s DUMP: python3-cobra: Installed: (none) Candidate: 0.26.3-2 Version table: 0.26.3-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-cache', 'policy', 'python3-cobra'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', '-y', 'install', 'python3-cobra=0.26.3-2'] 0m55.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libamd3 libblas3 libcolamd3 libexpat1 libgfortran5 libglpk40 libgomp1 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl7 libncursesw6 libnsl2 libpython3-stdlib libpython3.11 libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3 libsuitesparseconfig7 libtirpc-common libtirpc3 libxml2 media-types openssl python-cobra-data python3 python3-anyio python3-appdirs python3-certifi python3-click python3-colorama python3-dateutil python3-depinfo python3-diskcache python3-future python3-h11 python3-httpcore python3-httpx python3-idna python3-importlib-resources python3-lib2to3 python3-markdown-it python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pygments python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-minimal readline-common swig swig4.0 Suggested packages: libiodbc2-dev default-libmysqlclient-dev krb5-doc krb5-user python3-doc python3-tk python3-venv python3-matplotlib qsopt-ex python-future-doc python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python-pygments-doc ttf-bitstream-vera texlive-fonts-extra dvipng python-sympy-doc python3.11-venv python3.11-doc binutils binfmt-support readline-doc swig-doc swig-examples swig4.0-examples swig4.0-doc Recommended packages: krb5-locales libgpm2 python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-pil isympy-common The following NEW packages will be installed: ca-certificates libamd3 libblas3 libcolamd3 libexpat1 libgfortran5 libglpk40 libgomp1 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl7 libncursesw6 libnsl2 libpython3-stdlib libpython3.11 libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3 libsuitesparseconfig7 libtirpc-common libtirpc3 libxml2 media-types openssl python-cobra-data python3 python3-anyio python3-appdirs python3-certifi python3-click python3-cobra python3-colorama python3-dateutil python3-depinfo python3-diskcache python3-future python3-h11 python3-httpcore python3-httpx python3-idna python3-importlib-resources python3-lib2to3 python3-markdown-it python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pygments python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-minimal readline-common swig swig4.0 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 54.2 MB of archives. After this operation, 249 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.0.11-1 [2016 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.5-3 [815 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.5-3 [2034 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.4-5+b1 [26.5 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20230625-2 [134 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-4 [32.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-4 [79.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:11 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-4 [332 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-4 [134 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:16 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.43.1-1 [872 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.5-3 [1802 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.5-3 [582 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.4-5+b1 [9492 B] Get:22 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.4-5+b1 [26.5 kB] Get:23 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.0.11-1 [1416 kB] Get:24 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20230311 [153 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 13.2.0-4 [131 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.1.0+dfsg-3 [19.7 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.1.0+dfsg-3 [36.3 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.1.0+dfsg-3 [28.6 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 13.2.0-4 [804 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.4.7-7 [393 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:34 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libpython3.11 amd64 3.11.5-3 [1985 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python-cobra-data all 0.26.3-2 [1439 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.3-2 [39.1 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-sniffio all 1.2.0-1 [6372 B] Get:40 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.7.1-2 [62.2 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-anyio all 3.7.0-1 [55.7 kB] Get:42 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:43 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:45 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.6-1 [93.8 kB] Get:46 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-1 [241 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-depinfo amd64 2.2.0-1 [11.6 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-diskcache all 5.4.0-3 [33.9 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3-future all 0.18.2-6 [348 kB] Get:51 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.15.1+dfsg-1 [817 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get:53 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-rich all 13.3.1-2 [198 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-h11 all 0.14.0-1 [50.1 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-httpcore all 0.17.3-1 [41.7 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-rfc3986 all 1.5.0-3 [21.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-httpx all 0.23.3-1 [72.3 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.1.0-1 [59.1 kB] Get:60 http://deb.debian.org/debian sid/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:61 http://deb.debian.org/debian sid/main amd64 python3-importlib-resources all 6.0.1-1 [21.7 kB] Get:62 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:64 http://deb.debian.org/debian sid/main amd64 python3-swiglpk amd64 5.0.8-1 [63.0 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-3 [3868 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-optlang all 1.7.0-1 [79.6 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-tz all 2023.3-4 [30.8 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-6 [3515 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-pandas all 1.5.3+dfsg-6 [2886 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-pydantic all 1.10.4-1 [171 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.1-1 [60.8 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get:77 http://deb.debian.org/debian sid/main amd64 swig4.0 amd64 4.1.0-0.3 [1388 kB] Get:78 http://deb.debian.org/debian sid/main amd64 swig all 4.1.0-0.3 [321 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-sbml5 amd64 5.19.7+dfsg-2 [3472 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-cobra amd64 0.26.3-2 [1119 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.2 MB in 0s (129 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5205 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.11-1_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.5-3_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.5-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.5-3_amd64.deb ... Unpacking python3.11-minimal (3.11.5-3) ... Setting up libssl3:amd64 (3.0.11-1) ... Setting up libpython3.11-minimal:amd64 (3.11.5-3) ... Setting up libexpat1:amd64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.5-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5533 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.4-5+b1_amd64.deb ... Unpacking python3-minimal (3.11.4-5+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../02-libncursesw6_6.4+20230625-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20230625-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../03-libkrb5support0_1.20.1-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../04-libk5crypto3_1.20.1-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../05-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../06-libkrb5-3_1.20.1-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-4) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../08-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../09-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../10-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../11-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../12-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../13-libsqlite3-0_3.43.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.43.1-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../14-libpython3.11-stdlib_3.11.5-3_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.5-3) ... Selecting previously unselected package python3.11. Preparing to unpack .../15-python3.11_3.11.5-3_amd64.deb ... Unpacking python3.11 (3.11.5-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../16-libpython3-stdlib_3.11.4-5+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.4-5+b1) ... Setting up python3-minimal (3.11.4-5+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6042 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.4-5+b1_amd64.deb ... Unpacking python3 (3.11.4-5+b1) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.0.11-1_amd64.deb ... Unpacking openssl (3.0.11-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../03-libgomp1_13.2.0-4_amd64.deb ... Unpacking libgomp1:amd64 (13.2.0-4) ... Selecting previously unselected package libsuitesparseconfig7:amd64. Preparing to unpack .../04-libsuitesparseconfig7_1%3a7.1.0+dfsg-3_amd64.deb ... Unpacking libsuitesparseconfig7:amd64 (1:7.1.0+dfsg-3) ... Selecting previously unselected package libamd3:amd64. Preparing to unpack .../05-libamd3_1%3a7.1.0+dfsg-3_amd64.deb ... Unpacking libamd3:amd64 (1:7.1.0+dfsg-3) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../06-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libcolamd3:amd64. Preparing to unpack .../07-libcolamd3_1%3a7.1.0+dfsg-3_amd64.deb ... Unpacking libcolamd3:amd64 (1:7.1.0+dfsg-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../08-libgfortran5_13.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (13.2.0-4) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../09-libltdl7_2.4.7-7_amd64.deb ... Unpacking libltdl7:amd64 (2.4.7-7) ... Selecting previously unselected package libglpk40:amd64. Preparing to unpack .../10-libglpk40_5.0-1+b1_amd64.deb ... Unpacking libglpk40:amd64 (5.0-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../11-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../12-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../13-libpython3.11_3.11.5-3_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.5-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../14-libxml2_2.9.14+dfsg-1.3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3) ... Selecting previously unselected package python-cobra-data. Preparing to unpack .../15-python-cobra-data_0.26.3-2_all.deb ... Unpacking python-cobra-data (0.26.3-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../16-python3-idna_3.3-2_all.deb ... Unpacking python3-idna (3.3-2) ... Selecting previously unselected package python3-sniffio. Preparing to unpack .../17-python3-sniffio_1.2.0-1_all.deb ... Unpacking python3-sniffio (1.2.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../18-python3-typing-extensions_4.7.1-2_all.deb ... Unpacking python3-typing-extensions (4.7.1-2) ... Selecting previously unselected package python3-anyio. Preparing to unpack .../19-python3-anyio_3.7.0-1_all.deb ... Unpacking python3-anyio (3.7.0-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../20-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../21-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../22-python3-colorama_0.4.6-4_all.deb ... Unpacking python3-colorama (0.4.6-4) ... Selecting previously unselected package python3-click. Preparing to unpack .../23-python3-click_8.1.6-1_all.deb ... Unpacking python3-click (8.1.6-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../24-python3-pkg-resources_68.1.2-1_all.deb ... Unpacking python3-pkg-resources (68.1.2-1) ... Selecting previously unselected package python3-depinfo. Preparing to unpack .../25-python3-depinfo_2.2.0-1_amd64.deb ... Unpacking python3-depinfo (2.2.0-1) ... Selecting previously unselected package python3-diskcache. Preparing to unpack .../26-python3-diskcache_5.4.0-3_all.deb ... Unpacking python3-diskcache (5.4.0-3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.11.5-1_all.deb ... Unpacking python3-lib2to3 (3.11.5-1) ... Selecting previously unselected package python3-future. Preparing to unpack .../28-python3-future_0.18.2-6_all.deb ... Unpacking python3-future (0.18.2-6) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../29-python3-pygments_2.15.1+dfsg-1_all.deb ... Unpacking python3-pygments (2.15.1+dfsg-1) ... Selecting previously unselected package python3-mdurl. Preparing to unpack .../30-python3-mdurl_0.1.2-1_all.deb ... Unpacking python3-mdurl (0.1.2-1) ... Selecting previously unselected package python3-markdown-it. Preparing to unpack .../31-python3-markdown-it_3.0.0-2_all.deb ... Unpacking python3-markdown-it (3.0.0-2) ... Selecting previously unselected package python3-rich. Preparing to unpack .../32-python3-rich_13.3.1-2_all.deb ... Unpacking python3-rich (13.3.1-2) ... Selecting previously unselected package python3-h11. Preparing to unpack .../33-python3-h11_0.14.0-1_all.deb ... Unpacking python3-h11 (0.14.0-1) ... Selecting previously unselected package python3-httpcore. Preparing to unpack .../34-python3-httpcore_0.17.3-1_all.deb ... Unpacking python3-httpcore (0.17.3-1) ... Selecting previously unselected package python3-rfc3986. Preparing to unpack .../35-python3-rfc3986_1.5.0-3_all.deb ... Unpacking python3-rfc3986 (1.5.0-3) ... Selecting previously unselected package python3-httpx. Preparing to unpack .../36-python3-httpx_0.23.3-1_all.deb ... Unpacking python3-httpx (0.23.3-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../37-python3-more-itertools_10.1.0-1_all.deb ... Unpacking python3-more-itertools (10.1.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../38-python3-zipp_1.0.0-6_all.deb ... Unpacking python3-zipp (1.0.0-6) ... Selecting previously unselected package python3-importlib-resources. Preparing to unpack .../39-python3-importlib-resources_6.0.1-1_all.deb ... Unpacking python3-importlib-resources (6.0.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../40-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../41-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-swiglpk. Preparing to unpack .../42-python3-swiglpk_5.0.8-1_amd64.deb ... Unpacking python3-swiglpk (5.0.8-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../43-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../44-python3-sympy_1.12-3_all.deb ... Unpacking python3-sympy (1.12-3) ... Selecting previously unselected package python3-optlang. Preparing to unpack .../45-python3-optlang_1.7.0-1_all.deb ... Unpacking python3-optlang (1.7.0-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../46-python3-dateutil_2.8.2-3_all.deb ... Unpacking python3-dateutil (2.8.2-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../47-python3-tz_2023.3-4_all.deb ... Unpacking python3-tz (2023.3-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../48-python3-pandas-lib_1.5.3+dfsg-6_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.3+dfsg-6) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../49-python3-pandas_1.5.3+dfsg-6_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-6) ... Selecting previously unselected package python3-pydantic. Preparing to unpack .../50-python3-pydantic_1.10.4-1_all.deb ... Unpacking python3-pydantic (1.10.4-1) ... Selecting previously unselected package python3-ruamel.yaml.clib:amd64. Preparing to unpack .../51-python3-ruamel.yaml.clib_0.2.7-1+b2_amd64.deb ... Unpacking python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../52-python3-ruamel.yaml_0.17.21-1_all.deb ... Unpacking python3-ruamel.yaml (0.17.21-1) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../53-python3-simplejson_3.19.1-1_amd64.deb ... Unpacking python3-simplejson (3.19.1-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../54-python3-tabulate_0.8.9-1_all.deb ... Unpacking python3-tabulate (0.8.9-1) ... Selecting previously unselected package swig4.0. Preparing to unpack .../55-swig4.0_4.1.0-0.3_amd64.deb ... Unpacking swig4.0 (4.1.0-0.3) ... Selecting previously unselected package swig. Preparing to unpack .../56-swig_4.1.0-0.3_all.deb ... Unpacking swig (4.1.0-0.3) ... Selecting previously unselected package python3-sbml5. Preparing to unpack .../57-python3-sbml5_5.19.7+dfsg-2_amd64.deb ... Unpacking python3-sbml5 (5.19.7+dfsg-2) ... Selecting previously unselected package python3-cobra. Preparing to unpack .../58-python3-cobra_0.26.3-2_amd64.deb ... Unpacking python3-cobra (0.26.3-2) ... Setting up media-types (10.1.0) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libicu72:amd64 (72.1-3) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libsqlite3-0:amd64 (3.43.1-1) ... Setting up libgomp1:amd64 (13.2.0-4) ... Setting up libkrb5support0:amd64 (1.20.1-4) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libncursesw6:amd64 (6.4+20230625-2) ... Setting up libk5crypto3:amd64 (1.20.1-4) ... Setting up libltdl7:amd64 (2.4.7-7) ... Setting up libgfortran5:amd64 (13.2.0-4) ... Setting up libsuitesparseconfig7:amd64 (1:7.1.0+dfsg-3) ... Setting up libkrb5-3:amd64 (1.20.1-4) ... Setting up swig4.0 (4.1.0-0.3) ... Setting up openssl (3.0.11-1) ... Setting up python-cobra-data (0.26.3-2) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up swig (4.1.0-0.3) ... Setting up libamd3:amd64 (1:7.1.0+dfsg-3) ... Setting up libcolamd3:amd64 (1:7.1.0+dfsg-3) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libglpk40:amd64 (5.0-1+b1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-4) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.5-3) ... Setting up libpython3-stdlib:amd64 (3.11.4-5+b1) ... Setting up python3.11 (3.11.5-3) ... Setting up libpython3.11:amd64 (3.11.5-3) ... Setting up python3 (3.11.4-5+b1) ... Setting up python3-sbml5 (5.19.7+dfsg-2) ... Setting up python3-tz (2023.3-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.19.1-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-idna (3.3-2) ... Setting up python3-h11 (0.14.0-1) ... Setting up python3-typing-extensions (4.7.1-2) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-diskcache (5.4.0-3) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-swiglpk (5.0.8-1) ... Setting up python3-pkg-resources (68.1.2-1) ... Setting up python3-more-itertools (10.1.0-1) ... Setting up python3-sniffio (1.2.0-1) ... Setting up python3-sympy (1.12-3) ... Setting up python3-anyio (3.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-click (8.1.6-1) ... Setting up python3-pygments (2.15.1+dfsg-1) ... Setting up python3-rfc3986 (1.5.0-3) ... Setting up python3-pydantic (1.10.4-1) ... Setting up python3-depinfo (2.2.0-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-ruamel.yaml (0.17.21-1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-optlang (1.7.0-1) ... Setting up python3-httpcore (0.17.3-1) ... Setting up python3-importlib-resources (6.0.1-1) ... Setting up python3-rich (13.3.1-2) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-6) ... Setting up python3-pandas (1.5.3+dfsg-6) ... Setting up python3-httpx (0.23.3-1) ... Setting up python3-cobra (0.26.3-2) ... Processing triggers for libc-bin (2.37-10) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', '-y', 'install', 'python3-cobra=0.26.3-2'] 0m55.7s INFO: Running scripts post_install 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_install_exceptions'] 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_install_exceptions'] 0m55.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 0m57.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 0m59.8s DEBUG: No broken symlinks as far as we can find. 0m59.8s INFO: /bin converted to /usr/bin by /usr merge 0m59.8s INFO: /lib converted to /usr/lib by /usr merge 0m59.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m59.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m59.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m59.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m59.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m59.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m59.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m59.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m59.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m59.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m59.8s INFO: /sbin converted to /usr/sbin by /usr merge 1m0.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', '-ac', '--ignore-obsolete'] 1m2.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', '-ac', '--ignore-obsolete'] 1m2.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m2.3s DUMP: 0.15.6 1m2.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m2.3s INFO: Running adequate version 0.15.6 now. 1m2.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'python3-cobra'] 1m2.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'python3-cobra'] 1m2.4s INFO: Running scripts pre_remove 1m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_exceptions'] 1m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/pre_remove_exceptions'] 1m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m5.1s DUMP: install ok installed apt apt 2.7.6 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b5 install ok installed bsdutils bsdutils 1:2.39.2-1 install ok installed ca-certificates ca-certificates 20230311 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.13 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.22.0 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-4 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.11-3 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libamd3:amd64 libamd3 1:7.1.0+dfsg-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.6 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:3.1.1-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.39.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.37-10 install ok installed libc6:amd64 libc6 2.37-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcolamd3:amd64 libcolamd3 1:7.1.0+dfsg-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libexpat1:amd64 libexpat1 2.5.0-2 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-3 install ok installed libgfortran5:amd64 libgfortran5 13.2.0-4 install ok installed libglpk40:amd64 libglpk40 5.0-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.1-4+b1 install ok installed libgomp1:amd64 libgomp1 13.2.0-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-4 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.4-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-4 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-4 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed libltdl7:amd64 libltdl7 2.4.7-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.4-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.39.2-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20230625-2 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.0-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-7 install ok installed libpam-runtime libpam-runtime 1.5.2-7 install ok installed libpam0g:amd64 libpam0g 1.5.2-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.4-5+b1 install ok installed libpython3.11:amd64 libpython3.11 3.11.5-3 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.5-3 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.5-3 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.5-1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1 install ok installed libsepol2:amd64 libsepol2 3.5-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.2-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.43.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.0.11-1 install ok installed libstdc++6:amd64 libstdc++6 13.2.0-4 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.1.0+dfsg-3 install ok installed libsystemd0:amd64 libsystemd0 254.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20230625-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libudev1:amd64 libudev1 254.3-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.2-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20230808-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.2-1 install ok installed ncurses-base ncurses-base 6.4+20230625-2 install ok installed ncurses-bin ncurses-bin 6.4+20230625-2 install ok installed openssl openssl 3.0.11-1 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-9 install ok installed python-cobra-data python-cobra-data 0.26.3-2 install ok installed python3 python3 3.11.4-5+b1 install ok installed python3-anyio python3-anyio 3.7.0-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-certifi python3-certifi 2022.9.24-1 install ok installed python3-click python3-click 8.1.6-1 install ok installed python3-cobra python3-cobra 0.26.3-2 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-depinfo python3-depinfo 2.2.0-1 install ok installed python3-diskcache python3-diskcache 5.4.0-3 install ok installed python3-future python3-future 0.18.2-6 install ok installed python3-h11 python3-h11 0.14.0-1 install ok installed python3-httpcore python3-httpcore 0.17.3-1 install ok installed python3-httpx python3-httpx 0.23.3-1 install ok installed python3-idna python3-idna 3.3-2 install ok installed python3-importlib-resources python3-importlib-resources 6.0.1-1 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-markdown-it python3-markdown-it 3.0.0-2 install ok installed python3-mdurl python3-mdurl 0.1.2-1 install ok installed python3-minimal python3-minimal 3.11.4-5+b1 install ok installed python3-more-itertools python3-more-itertools 10.1.0-1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-numpy python3-numpy 1:1.24.2-1 install ok installed python3-optlang python3-optlang 1.7.0-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-6 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-6 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-1 install ok installed python3-pydantic python3-pydantic 1.10.4-1 install ok installed python3-pygments python3-pygments 2.15.1+dfsg-1 install ok installed python3-rfc3986 python3-rfc3986 1.5.0-3 install ok installed python3-rich python3-rich 13.3.1-2 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.17.21-1 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.7-1+b2 install ok installed python3-sbml5 python3-sbml5 5.19.7+dfsg-2 install ok installed python3-simplejson python3-simplejson 3.19.1-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-sniffio python3-sniffio 1.2.0-1 install ok installed python3-swiglpk python3-swiglpk 5.0.8-1 install ok installed python3-sympy python3-sympy 1.12-3 install ok installed python3-tabulate python3-tabulate 0.8.9-1 install ok installed python3-typing-extensions python3-typing-extensions 4.7.1-2 install ok installed python3-tz python3-tz 2023.3-4 install ok installed python3-zipp python3-zipp 1.0.0-6 install ok installed python3.11 python3.11 3.11.5-3 install ok installed python3.11-minimal python3.11-minimal 3.11.5-3 install ok installed readline-common readline-common 8.2-1.3 install ok installed sed sed 4.9-1 install ok installed swig swig 4.1.0-0.3 install ok installed swig4.0 swig4.0 4.1.0-0.3 install ok installed sysvinit-utils sysvinit-utils 3.08-1 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-10 install ok installed usr-is-merged usr-is-merged 37 install ok installed util-linux util-linux 2.39.2-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-3 1m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'remove', 'ca-certificates', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libxml2:amd64', 'media-types', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig', 'swig4.0', 'python3-cobra'] 1m12.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libamd3 libblas3 libcolamd3 libexpat1 libgfortran5 libglpk40 libgomp1 libgssapi-krb5-2 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libltdl7 libncursesw6 libnsl2 libpython3-stdlib libpython3.11 libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3 libsuitesparseconfig7 libtirpc-common libtirpc3 libxml2 media-types openssl python-cobra-data python3 python3-anyio python3-appdirs python3-certifi python3-click python3-cobra python3-colorama python3-dateutil python3-depinfo python3-diskcache python3-future python3-h11 python3-httpcore python3-httpx python3-idna python3-importlib-resources python3-lib2to3 python3-markdown-it python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-optlang python3-pandas python3-pandas-lib python3-pkg-resources python3-pydantic python3-pygments python3-rfc3986 python3-rich python3-ruamel.yaml python3-ruamel.yaml.clib python3-sbml5 python3-simplejson python3-six python3-sniffio python3-swiglpk python3-sympy python3-tabulate python3-typing-extensions python3-tz python3-zipp python3.11 python3.11-minimal readline-common swig swig4.0 0 upgraded, 0 newly installed, 80 to remove and 0 not upgraded. After this operation, 249 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13946 files and directories currently installed.) Removing python3-cobra (0.26.3-2) ... Removing python3-httpx (0.23.3-1) ... Removing python3-httpcore (0.17.3-1) ... Removing python3-certifi (2022.9.24-1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-optlang (1.7.0-1) ... Removing python3-swiglpk (5.0.8-1) ... Removing libglpk40:amd64 (5.0-1+b1) ... Removing libamd3:amd64 (1:7.1.0+dfsg-3) ... Removing python3-pandas (1.5.3+dfsg-6) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-6) ... Removing python3-numpy (1:1.24.2-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libcolamd3:amd64 (1:7.1.0+dfsg-3) ... Removing python3-simplejson (3.19.1-1) ... Removing python3-sympy (1.12-3) ... Removing python3-rich (13.3.1-2) ... Removing python3-ruamel.yaml (0.17.21-1) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-six (1.16.0-4) ... Removing python3-sbml5 (5.19.7+dfsg-2) ... Removing libpython3.11:amd64 (3.11.5-3) ... Removing libgfortran5:amd64 (13.2.0-4) ... Removing libsuitesparseconfig7:amd64 (1:7.1.0+dfsg-3) ... Removing libgomp1:amd64 (13.2.0-4) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3) ... Removing libicu72:amd64 (72.1-3) ... Removing libltdl7:amd64 (2.4.7-7) ... Removing openssl (3.0.11-1) ... Removing python-cobra-data (0.26.3-2) ... Removing python3-anyio (3.7.0-1) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-click (8.1.6-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-depinfo (2.2.0-1) ... Removing python3-diskcache (5.4.0-3) ... Removing python3-future (0.18.2-6) ... Removing python3-h11 (0.14.0-1) ... Removing python3-rfc3986 (1.5.0-3) ... Removing python3-idna (3.3-2) ... Removing python3-importlib-resources (6.0.1-1) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-markdown-it (3.0.0-2) ... Removing python3-mdurl (0.1.2-1) ... Removing python3-zipp (1.0.0-6) ... Removing python3-more-itertools (10.1.0-1) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pygments (2.15.1+dfsg-1) ... Removing python3-pkg-resources (68.1.2-1) ... Removing python3-pydantic (1.10.4-1) ... Removing python3-sniffio (1.2.0-1) ... Removing python3-tabulate (0.8.9-1) ... Removing python3-typing-extensions (4.7.1-2) ... Removing python3-tz (2023.3-4) ... Removing swig (4.1.0-0.3) ... Removing swig4.0 (4.1.0-0.3) ... Removing python3 (3.11.4-5+b1) ... Removing python3.11 (3.11.5-3) ... Removing python3-minimal (3.11.4-5+b1) ... Removing python3.11-minimal (3.11.5-3) ... Removing libexpat1:amd64 (2.5.0-2) ... Removing libpython3-stdlib:amd64 (3.11.4-5+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.5-3) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-4) ... Removing libkrb5-3:amd64 (1.20.1-4) ... Removing libk5crypto3:amd64 (1.20.1-4) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-4) ... Removing libncursesw6:amd64 (6.4+20230625-2) ... Removing libpython3.11-minimal:amd64 (3.11.5-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.43.1-1) ... Removing libssl3:amd64 (3.0.11-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing media-types (10.1.0) ... Removing readline-common (8.2-1.3) ... Processing triggers for libc-bin (2.37-10) ... 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'remove', 'ca-certificates', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libxml2:amd64', 'media-types', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig', 'swig4.0', 'python3-cobra'] 1m12.7s INFO: Running scripts post_remove 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_remove_exceptions'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_remove_exceptions'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--purge', 'ca-certificates', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libxml2:amd64', 'media-types', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig', 'swig4.0'] 1m12.9s DUMP: (Reading database ... 5212 files and directories currently installed.) Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libglpk40 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-4) ... dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.5-3) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for openssl (3.0.11-1) ... dpkg: warning: ignoring request to remove python-cobra-data which isn't installed Purging configuration files for python3 (3.11.4-5+b1) ... dpkg: warning: ignoring request to remove python3-anyio which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-depinfo which isn't installed dpkg: warning: ignoring request to remove python3-diskcache which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-h11 which isn't installed dpkg: warning: ignoring request to remove python3-httpcore which isn't installed dpkg: warning: ignoring request to remove python3-httpx which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-resources which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markdown-it which isn't installed dpkg: warning: ignoring request to remove python3-mdurl which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-optlang which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pydantic which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-rfc3986 which isn't installed dpkg: warning: ignoring request to remove python3-rich which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-sbml5 which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-sniffio which isn't installed dpkg: warning: ignoring request to remove python3-swiglpk which isn't installed Purging configuration files for python3-sympy (1.12-3) ... dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.5-3) ... Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove swig which isn't installed dpkg: warning: ignoring request to remove swig4.0 which isn't installed 1m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--purge', 'ca-certificates', 'libamd3:amd64', 'libblas3:amd64', 'libcolamd3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libsuitesparseconfig7:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libxml2:amd64', 'media-types', 'openssl', 'python-cobra-data', 'python3', 'python3-anyio', 'python3-appdirs', 'python3-certifi', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-depinfo', 'python3-diskcache', 'python3-future', 'python3-h11', 'python3-httpcore', 'python3-httpx', 'python3-idna', 'python3-importlib-resources', 'python3-lib2to3', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-optlang', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-pydantic', 'python3-pygments', 'python3-rfc3986', 'python3-rich', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-sbml5', 'python3-simplejson', 'python3-six', 'python3-sniffio', 'python3-swiglpk', 'python3-sympy', 'python3-tabulate', 'python3-typing-extensions', 'python3-tz', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'readline-common', 'swig', 'swig4.0'] 1m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--purge', 'python3-cobra'] 1m13.0s DUMP: dpkg: warning: ignoring request to remove python3-cobra which isn't installed 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--purge', 'python3-cobra'] 1m13.0s INFO: Running scripts post_purge 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_purge_exceptions'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_purge_exceptions'] 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--purge', '--pending'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--purge', '--pending'] 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--remove', '--pending'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg', '--remove', '--pending'] 1m13.0s INFO: Running scripts post_test 1m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_test_exceptions'] 1m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'tmp/scripts/post_test_exceptions'] 1m13.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 1m13.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 1m14.3s DEBUG: No broken symlinks as far as we can find. 1m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-divert', '--list'] 1m14.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 1m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'dpkg-divert', '--list'] 1m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'clean'] 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l', 'apt-get', 'clean'] 1m14.4s DEBUG: Recording chroot state 1m15.1s INFO: PASS: Installation and purging test. 1m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/shm'] 1m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/shm'] 1m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/console'] 1m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/console'] 1m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/ptmx'] 1m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/ptmx'] 1m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/pts'] 1m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/dev/pts'] 1m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/proc'] 1m15.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l/proc'] 1m15.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 1m16.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_2r7m14l'] 1m16.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_2r7m14l 1m16.0s INFO: PASS: All tests. 1m16.0s INFO: piuparts run ends. ret=0 End: 2023-09-20 22:58:17 GMT