Start: 2019-05-02 10:35:46 UTC Package: metaphlan2-data Version: 2.6.0+ds-4 Installed-Size: 753107 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, bowtie2 Description: data package for Metagenomic Phylogenetic Analysis Homepage: https://bitbucket.org/biobakery/metaphlan2 Description-md5: f0775409e41de9fba49cda4590c73ce4 Section: science Priority: optional Filename: pool/main/m/metaphlan2-data/metaphlan2-data_2.6.0+ds-4_all.deb Size: 204323768 MD5sum: de685246213a02dcedfee6e464f7ac11 SHA256: f38a6e3f49d7b03ba80d9fdd5647b9f9f2dfb38d43b28618053e8ef2c60db7d7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt metaphlan2-data=2.6.0+ds-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.99~201905021005~0.98-61-g1dc90988 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt metaphlan2-data=2.6.0+ds-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1 (2019-04-12) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpd0fEaU 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpd0fEaU 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpd0fEaU/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmpd0fEaU/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', 'update'] 0m6.2s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [247 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8282 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6320 kB] Fetched 14.8 MB in 3s (4707 kB/s) Reading package lists... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', 'update'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', '-yf', 'dist-upgrade'] 0m7.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3656 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 libc6 amd64 2.28-10 [2867 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libc-bin amd64 2.28-10 [789 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3656 kB in 0s (72.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4562 files and directories currently installed.) Preparing to unpack .../libc6_2.28-10_amd64.deb ... Unpacking libc6:amd64 (2.28-10) over (2.28-9) ... Setting up libc6:amd64 (2.28-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4562 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10_amd64.deb ... Unpacking libc-bin (2.28-10) over (2.28-9) ... Setting up libc-bin (2.28-10) ... 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', '-yf', 'dist-upgrade'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s DUMP: 1dc861657ffa91d8d72b27a29ecc7fe9 - 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.1s INFO: Running scripts post_setup 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m8.1s DUMP: dpkg-query: no packages found matching systemd-sysv 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_dummy_users'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_dummy_users'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_forbid_home'] 0m8.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_forbid_home'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', 'clean'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', 'clean'] 0m8.8s DEBUG: Recording chroot state 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.0 install ok installed base-files base-files 10.2 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.6 install ok installed e2fsprogs e2fsprogs 1.45.0-1 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-7 install ok installed gpgv gpgv 2.2.13-1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.0 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.45.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.45.0-1 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.45.0-1 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-7 install ok installed libsystemd0:amd64 libsystemd0 241-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2 install ok installed libudev1:amd64 libudev1 241-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'dpkg-divert', '--list'] 0m9.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'dpkg-divert', '--list'] 0m9.3s INFO: Running scripts is_testable 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s INFO: apt-cache does not know about any of the requested packages 0m9.3s INFO: Running scripts pre_test 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_test_root_password'] 0m9.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_test_root_password'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 0m9.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 0m9.9s DEBUG: No broken symlinks as far as we can find. 0m9.9s INFO: Running scripts pre_install 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 0m10.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 0m10.8s DEBUG: No broken symlinks as far as we can find. 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-cache', 'policy'] 0m11.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-cache', 'policy'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-cache', 'policy', 'metaphlan2-data'] 0m11.7s DUMP: metaphlan2-data: Installed: (none) Candidate: 2.6.0+ds-4 Version table: 2.6.0+ds-4 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-cache', 'policy', 'metaphlan2-data'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', '-y', 'install', 'metaphlan2-data=2.6.0+ds-4'] 28m27.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: bowtie2 libatomic1 libexpat1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 libsqlite3-0 libssl1.1 libtbb2 mime-support python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common Suggested packages: bowtie2-examples python-doc python-tk python2-doc python2.7-doc binutils binfmt-support readline-doc Recommended packages: bzip2 file xz-utils The following NEW packages will be installed: bowtie2 libatomic1 libexpat1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 libsqlite3-0 libssl1.1 libtbb2 metaphlan2-data mime-support python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 212 MB of archives. After this operation, 800 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 libpython2.7-minimal amd64 2.7.16-2 [395 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 python2.7-minimal amd64 2.7.16-2 [1367 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.1b-2 [1530 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 mime-support all 3.62 [37.2 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 readline-common all 7.0-5 [70.6 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 libpython2.7-stdlib amd64 2.7.16-2 [1910 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 python2.7 amd64 2.7.16-2 [305 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:15 http://mirror-ubc.debian.org/debian sid/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:16 http://mirror-ubc.debian.org/debian sid/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:17 http://mirror-ubc.debian.org/debian sid/main amd64 libatomic1 amd64 8.3.0-7 [9036 B] Get:18 http://mirror-ubc.debian.org/debian sid/main amd64 libtbb2 amd64 2018~U6-4 [147 kB] Get:19 http://mirror-ubc.debian.org/debian sid/main amd64 bowtie2 amd64 2.3.4.3-1 [1188 kB] Get:20 http://mirror-ubc.debian.org/debian sid/main amd64 metaphlan2-data all 2.6.0+ds-4 [204 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 212 MB in 3s (68.9 MB/s) Selecting previously unselected package libpython2.7-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4564 files and directories currently installed.) Preparing to unpack .../00-libpython2.7-minimal_2.7.16-2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../01-python2.7-minimal_2.7.16-2_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../02-python2-minimal_2.7.16-1_amd64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../03-python-minimal_2.7.16-1_amd64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../04-libssl1.1_1.1.1b-2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1b-2) ... Selecting previously unselected package mime-support. Preparing to unpack .../05-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../06-libexpat1_2.2.6-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../07-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../08-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../09-libsqlite3-0_3.27.2-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-2) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../10-libpython2.7-stdlib_2.7.16-2_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-2) ... Selecting previously unselected package python2.7. Preparing to unpack .../11-python2.7_2.7.16-2_amd64.deb ... Unpacking python2.7 (2.7.16-2) ... Selecting previously unselected package libpython2-stdlib:amd64. Preparing to unpack .../12-libpython2-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython2-stdlib:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../13-libpython-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2.7-minimal:amd64 (2.7.16-2) ... Setting up python2.7-minimal (2.7.16-2) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5401 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5434 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_amd64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../libatomic1_8.3.0-7_amd64.deb ... Unpacking libatomic1:amd64 (8.3.0-7) ... Selecting previously unselected package libtbb2:amd64. Preparing to unpack .../libtbb2_2018~U6-4_amd64.deb ... Unpacking libtbb2:amd64 (2018~U6-4) ... Selecting previously unselected package bowtie2. Preparing to unpack .../bowtie2_2.3.4.3-1_amd64.deb ... Unpacking bowtie2 (2.3.4.3-1) ... Selecting previously unselected package metaphlan2-data. Preparing to unpack .../metaphlan2-data_2.6.0+ds-4_all.deb ... Unpacking metaphlan2-data (2.6.0+ds-4) ... Setting up libexpat1:amd64 (2.2.6-1) ... Setting up mime-support (3.62) ... Setting up libssl1.1:amd64 (1.1.1b-2) ... Setting up libsqlite3-0:amd64 (3.27.2-2) ... Setting up libatomic1:amd64 (8.3.0-7) ... Setting up readline-common (7.0-5) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libtbb2:amd64 (2018~U6-4) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2) ... Setting up python2.7 (2.7.16-2) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up python2 (2.7.16-1) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up bowtie2 (2.3.4.3-1) ... Setting up metaphlan2-data (2.6.0+ds-4) ... Settings: Output files: "/usr/share/metaphlan2/db_v20/mpa_v20_m200.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 4 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: /var/lib/metaphlan2-data/markers.fasta Building a SMALL index Reading reference sizes Time reading reference sizes: 00:00:06 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:04 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:26 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:08 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:13 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 7.11558e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 1 No samples; assembling all-inclusive block Sorting block of length 711557587 for bucket 1 (Using difference cover) Sorting block time: 00:10:04 Returning block of 711557588 for bucket 1 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2 Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:13:59 Reading reference sizes Time reading reference sizes: 00:00:05 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:06 Time to reverse reference sequence: 00:00:01 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:30 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:09 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:16 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 7.11558e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 1 No samples; assembling all-inclusive block Sorting block of length 711557587 for bucket 1 (Using difference cover) Sorting block time: 00:09:36 Returning block of 711557588 for bucket 1 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2 Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2 Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:13:49 Metaphlan2 data are properly created. Processing triggers for libc-bin (2.28-10) ... 28m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'apt-get', '-y', 'install', 'metaphlan2-data=2.6.0+ds-4'] 28m27.0s INFO: Running scripts post_install 28m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_install_exceptions'] 28m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'tmp/scripts/post_install_exceptions'] 28m27.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 28m27.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 28m27.9s ERROR: WARN: Broken symlinks: /usr/share/doc/python2.7/changelog.gz -> NEWS.gz (python2.7) 28m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 28m27.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.0 install ok installed base-files base-files 10.2 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bowtie2 bowtie2 2.3.4.3-1 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.6 install ok installed e2fsprogs e2fsprogs 1.45.0-1 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-7 install ok installed gpgv gpgv 2.2.13-1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.0 install ok installed libatomic1:amd64 libatomic1 8.3.0-7 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.45.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-1 install ok installed libext2fs2:amd64 libext2fs2 1.45.0-1 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-2 install ok installed libss2:amd64 libss2 1.45.0-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1b-2 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-7 install ok installed libsystemd0:amd64 libsystemd0 241-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtbb2:amd64 libtbb2 2018~U6-4 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2 install ok installed libudev1:amd64 libudev1 241-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed metaphlan2-data metaphlan2-data 2.6.0+ds-4 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6 install ok installed python python 2.7.16-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 28m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 28m28.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', '-ac', '--ignore-obsolete'] 28m28.9s DUMP: debsums: missing file /srv/piuparts.debian.org/tmp/tmpd0fEaU/var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 28m28.9s DEBUG: Command failed (status=2), but ignoring error: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpd0fEaU', '-ac', '--ignore-obsolete'] 28m28.9s ERROR: FAIL: debsums reports modifications inside the chroot: debsums: missing file /var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 28m29.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/shm'] 28m29.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/shm'] 28m29.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/console'] 28m29.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/console'] 28m29.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/ptmx'] 28m29.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/ptmx'] 28m29.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/pts'] 28m29.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/dev/pts'] 28m29.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/proc'] 28m29.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd0fEaU/proc'] 28m29.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 28m29.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpd0fEaU'] 28m29.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpd0fEaU 28m29.8s ERROR: piuparts run ends. ret=1 End: 2019-05-02 11:04:16 UTC