Start: 2026-02-01 09:47:34 GMT Package: gubbins Version: 3.4.3-2 Installed-Size: 518 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.38), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3-multiprocess, python3-numba, python3-numpy, python3-scipy, python3:any, python3, raxml Recommends: iqtree, fasttree Suggests: r-base-core Description: phylogenetic analysis of genome sequences Homepage: https://nickjcroucher.github.io/gubbins/ Description-md5: cc258d495d1b902fa507e53b5cc3902e Section: science Priority: optional Filename: pool/main/g/gubbins/gubbins_3.4.3-2_amd64.deb Size: 99040 MD5sum: 2496891ea1309c3b1a1af4688ecd07fe SHA256: 9419e6fb6a15a0825d93b646bf66968e6d39ab6f63b3ca36458a41c089667eb6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt gubbins=3.4.3-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt gubbins=3.4.3-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-42-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.159-1 (2025-12-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpp3wysxts 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpp3wysxts 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpp3wysxts/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmpp3wysxts/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'update'] 0m3.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [187 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7407 kB] Fetched 17.7 MB in 2s (9575 kB/s) Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s DUMP: 370eea62a505431beb6ade27056dbe75 - 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s INFO: Running scripts post_setup 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m4.3s DUMP: dpkg-query: no packages found matching systemd dpkg-query: no packages found matching systemd-sysv dpkg-query: no packages found matching sysv-rc 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'clean'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'clean'] 0m5.4s DEBUG: Recording chroot state 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DUMP: install ok installed apt apt 3.1.15 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.3-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.5 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-12 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b2 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.15 install ok installed libattr1:amd64 libattr1 1:2.5.2-3+b1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-11 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-11 install ok installed libc6:amd64 libc6 2.42-11 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b2 install ok installed libcap2:amd64 libcap2 1:2.75-10+b5 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-12 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-6 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-3 install ok installed libssl3t64:amd64 libssl3t64 3.5.5-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-12 install ok installed libsystemd0:amd64 libsystemd0 259-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 259-1 install ok installed libuuid1:amd64 libuuid1 2.41.3-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed login login 1:4.16.0-2+really2.41.3-3 install ok installed login.defs login.defs 1:4.19.2-1 install ok installed mawk mawk 1.3.4.20250131-2 install ok installed mount mount 2.41.3-3 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.5-1 install ok installed passwd passwd 1:4.19.2-1 install ok installed perl-base perl-base 5.40.1-7 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-5 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025c-3 install ok installed util-linux util-linux 2.41.3-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-2 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-divert', '--list'] 0m5.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-divert', '--list'] 0m5.8s INFO: Running scripts is_testable 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s INFO: apt-cache does not know about any of the requested packages 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_test_root_password'] 0m5.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_test_root_password'] 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 0m6.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 0m6.4s DEBUG: No broken symlinks as far as we can find. 0m6.4s INFO: Running scripts pre_install 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 0m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 0m6.9s DEBUG: No broken symlinks as far as we can find. 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-cache', 'policy'] 0m7.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-cache', 'policy'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-cache', 'policy', 'gubbins'] 0m7.6s DUMP: gubbins: Installed: (none) Candidate: 3.4.3-2 Version table: 3.4.3-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-cache', 'policy', 'gubbins'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', '-y', 'install', 'gubbins=3.4.3-2'] 0m58.9s DUMP: Reading package lists... Building dependency tree... Solving dependencies... The following additional packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libcom-err2 libcurl4t64 libdav1d7 libdeflate0 libedit2 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwloc15 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libllvm19 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpfm4 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libsvtav1enc2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtiff6 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2-16 libxrender1 libyuv0 libz3-4 llvm-19 llvm-19-linker-tools llvm-19-runtime media-types netbase python3 python3-biopython python3-cairo python3-charset-normalizer python3-decorator python3-dendropy python3-dill python3-freetype python3-llvmlite python3-minimal python3-multiprocess python3-numba python3-numpy python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3-scipy python3.13 python3.13-minimal raxml readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre r-base-core low-memory-monitor gnutls-bin krb5-doc krb5-user libhwloc-contrib-plugins liblcms2-utils llvm-19-doc python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-igraph samtools t-coffee wise python-charset-normalizer-doc python3-objgraph llvmlite-doc nvidia-cuda-toolkit gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: iqtree fasttree ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules llvm-19-dev binfmt-support | systemd python-biopython-doc ncbi-blast+ numba-doc python3-pip python3-olefile g++ | c++-compiler python3-pooch python3-yaml The following NEW packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gubbins libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libcom-err2 libcurl4t64 libdav1d7 libdeflate0 libedit2 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwloc15 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libllvm19 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpfm4 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libsvtav1enc2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtiff6 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2-16 libxrender1 libyuv0 libz3-4 llvm-19 llvm-19-linker-tools llvm-19-runtime media-types netbase python3 python3-biopython python3-cairo python3-charset-normalizer python3-decorator python3-dendropy python3-dill python3-freetype python3-llvmlite python3-minimal python3-multiprocess python3-numba python3-numpy python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3-scipy python3.13 python3.13-minimal raxml readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 135 MB of archives. After this operation, 573 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.4-1 [116 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.11-1+b1 [866 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.11-1+b1 [2254 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-3 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-3+b1 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-9 [920 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.11-1+b1 [1968 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.11-1+b1 [770 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [138 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7+b1 [209 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-12 [862 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7+b1 [2550 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [7487 kB] Get:21 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:22 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1+b3 [23.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b9 [304 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.54-1 [288 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.1+dfsg-2 [493 kB] Get:27 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:28 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:29 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:30 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:31 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-3 [54.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-extra all 2.37-8 [1792 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.4-2 [171 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.3-1+b1 [564 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libgav1-2 amd64 0.20.0-2 [373 kB] Get:38 http://deb.debian.org/debian sid/main amd64 librav1e0.8 amd64 0.8.1-7 [978 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [176 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.3.0-1+b2 [137 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 4.4.1-1+b1 [258 kB] Get:44 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.17-1 [163 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.4-1 [206 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5 [26.7 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 15.2.0-12 [9524 B] Get:48 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.86.3-5 [1547 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-11+b1 [77.0 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-1 [514 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.3-1+b1 [14.6 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-2+b1 [49.5 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:54 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5+b1 [199 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b1 [116 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b1 [336 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1+b1 [114 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1+b1 [126 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b1 [20.8 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2 [27.9 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 12.1.0-1 [551 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-3 [131 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b1 [259 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:67 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http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:79 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.86+dfsg-1+b1 [1632 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-dendropy all 4.6.1-2 [277 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.4.0-1 [83.7 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-multiprocess all 0.70.18-2 [107 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20251016-1 [93.6 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1+b1 [8646 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libllvm19 amd64 1:19.1.7-20+b1 [26.0 MB] Get:88 http://deb.debian.org/debian sid/main amd64 llvm-19-runtime amd64 1:19.1.7-20+b1 [549 kB] Get:89 http://deb.debian.org/debian sid/main amd64 llvm-19-linker-tools amd64 1:19.1.7-20+b1 [1266 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-3+b8 [25.1 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Get:96 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b2 [59.8 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.10-1+b1 [444 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.11-3 [1509 kB] Get:109 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3+b1 [60.7 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1+b1 [245 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.18.0-2 [412 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libpfm4 amd64 4.13.0+git106-g3e4031b-1+b1 [372 kB] Get:113 http://deb.debian.org/debian sid/main amd64 llvm-19 amd64 1:19.1.7-20+b1 [16.4 MB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-llvmlite amd64 0.44.0-1 [231 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-8 [250 kB] Get:117 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.16.3-4 [18.6 MB] Get:118 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 15.2.0-12 [140 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.12.2-1+b1 [165 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libtbbbind-2-5 amd64 2022.3.0-2 [14.6 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libtbbmalloc2 amd64 2022.3.0-2 [51.0 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libtbb12 amd64 2022.3.0-2 [97.8 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3-numba amd64 0.61.2+dfsg-2 [1773 kB] Get:124 http://deb.debian.org/debian sid/main amd64 raxml amd64 8.2.13+dfsg-3 [1546 kB] Get:125 http://deb.debian.org/debian sid/main amd64 gubbins amd64 3.4.3-2 [99.0 kB] Preconfiguring packages ... Fetched 135 MB in 1s (119 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4909 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.4-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.11-1+b1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.11-1+b1) ... 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Preparing to unpack .../099-python3-llvmlite_0.44.0-1_amd64.deb ... Unpacking python3-llvmlite (0.44.0-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../100-python3-decorator_5.2.1-2_all.deb ... Unpacking python3-decorator (5.2.1-2) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../101-libqhull-r8.0_2020.2-8_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-8) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../102-python3-scipy_1.16.3-4_amd64.deb ... Unpacking python3-scipy (1.16.3-4) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../103-libgomp1_15.2.0-12_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-12) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../104-libhwloc15_2.12.2-1+b1_amd64.deb ... Unpacking libhwloc15:amd64 (2.12.2-1+b1) ... Selecting previously unselected package libtbbbind-2-5:amd64. Preparing to unpack .../105-libtbbbind-2-5_2022.3.0-2_amd64.deb ... Unpacking libtbbbind-2-5:amd64 (2022.3.0-2) ... Selecting previously unselected package libtbbmalloc2:amd64. Preparing to unpack .../106-libtbbmalloc2_2022.3.0-2_amd64.deb ... Unpacking libtbbmalloc2:amd64 (2022.3.0-2) ... Selecting previously unselected package libtbb12:amd64. Preparing to unpack .../107-libtbb12_2022.3.0-2_amd64.deb ... Unpacking libtbb12:amd64 (2022.3.0-2) ... Selecting previously unselected package python3-numba. Preparing to unpack .../108-python3-numba_0.61.2+dfsg-2_amd64.deb ... Unpacking python3-numba (0.61.2+dfsg-2) ... Selecting previously unselected package raxml. Preparing to unpack .../109-raxml_8.2.13+dfsg-3_amd64.deb ... Unpacking raxml (8.2.13+dfsg-3) ... Selecting previously unselected package gubbins. Preparing to unpack .../110-gubbins_3.4.3-2_amd64.deb ... Unpacking gubbins (3.4.3-2) ... Setting up media-types (14.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-11+b1) ... Setting up liblcms2-2:amd64 (2.17-1) ... Setting up libtbbmalloc2:amd64 (2022.3.0-2) ... Setting up libpixman-1-0:amd64 (0.46.4-1+b1) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1+b1) ... Setting up libaom3:amd64 (3.13.1-2) ... Setting up libxau6:amd64 (1:1.0.11-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.5-2) ... Setting up libkeyutils1:amd64 (1.6.3-6+b1) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up liblerc4:amd64 (4.0.0+ds-5+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b2) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Setting up libbrotli1:amd64 (1.1.0-2+b9) ... Setting up libedit2:amd64 (3.1-20251016-1) ... Setting up libsqlite3-0:amd64 (3.46.1-9) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libdeflate0:amd64 (1.23-2+b1) ... Setting up libqhull-r8.0:amd64 (2020.2-8) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up libcom-err2:amd64 (1.47.2-3+b8) ... Setting up libgomp1:amd64 (15.2.0-12) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up libkrb5support0:amd64 (1.22.1-2) ... Setting up librav1e0.8:amd64 (0.8.1-7) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b3) ... Setting up libz3-4:amd64 (4.13.3-1+b1) ... Setting up libblas3:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpfm4:amd64 (4.13.0+git106-g3e4031b-1+b1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-5) ... Setting up libimagequant0:amd64 (4.4.1-1+b1) ... Setting up libunistring5:amd64 (1.3-2+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.54-1) ... Setting up libhwloc15:amd64 (2.12.2-1+b1) ... Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... Setting up libatomic1:amd64 (15.2.0-12) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.6+20251231-1) ... Setting up libk5crypto3:amd64 (1.22.1-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up libgfortran5:amd64 (15.2.0-12) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1+b1) ... Setting up libgav1-2:amd64 (0.20.0-2) ... Setting up libffi8:amd64 (3.5.2-3+b1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libdav1d7:amd64 (1.5.3-1+b1) ... Setting up libtiff6:amd64 (4.7.1-1) ... Setting up libtasn1-6:amd64 (4.21.0-2) ... Setting up libopenjp2-7:amd64 (2.5.4-1) ... Setting up libx11-6:amd64 (2:1.8.12-1+b1) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libssh2-1t64:amd64 (1.11.1-1+b1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1+b1) ... Setting up libyuv0:amd64 (0.0.1922.20260106-1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up raxml (8.2.13+dfsg-3) ... Setting up libllvm19:amd64 (1:19.1.7-20+b1) ... Setting up libavif16:amd64 (1.3.0-1+b2) ... Setting up liblapack3:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1+b1) ... Setting up fontconfig-config (2.17.1-3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-4+b1) ... Setting up libtbbbind-2-5:amd64 (2022.3.0-2) ... Setting up libglib2.0-0t64:amd64 (2.86.3-5) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.14.1+dfsg-2) ... Setting up libp11-kit0:amd64 (0.25.10-1+b1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libreadline8t64:amd64 (8.3-3+b1) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (12.3.2-1) ... Setting up llvm-19-linker-tools (1:19.1.7-20+b1) ... Setting up libfontconfig1:amd64 (2.17.1-3) ... Setting up llvm-19-runtime (1:19.1.7-20+b1) ... Setting up libpython3.13-stdlib:amd64 (3.13.11-1+b1) ... Setting up libpython3-stdlib:amd64 (3.13.9-3) ... Setting up libgnutls30t64:amd64 (3.8.11-3) ... Setting up python3.13 (3.13.11-1+b1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b2) ... Setting up python3 (3.13.9-3) ... Setting up libtbb12:amd64 (2022.3.0-2) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libcairo2:amd64 (1.18.4-3) ... Setting up python3-decorator (5.2.1-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ... Setting up python3-dill (0.4.0-1) ... Setting up libraqm0:amd64 (0.10.3-1+b1) ... Setting up python3-numpy (1:2.3.5+ds-3) ... Setting up python3-multiprocess (0.70.18-2) ... Setting up python3-dendropy (4.6.1-2) ... Setting up python3-scipy (1.16.3-4) ... Setting up python3-cairo (1.27.0-2+b1) ... Setting up libcurl4t64:amd64 (8.18.0-2) ... Setting up python3-charset-normalizer (3.4.4-2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (12.1.0-1) ... Setting up python3-rlpycairo (0.3.0-4) ... Setting up python3-reportlab (4.4.9-1) ... Setting up llvm-19 (1:19.1.7-20+b1) ... Setting up python3-llvmlite (0.44.0-1) ... Setting up python3-numba (0.61.2+dfsg-2) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Processing triggers for libc-bin (2.42-11) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.86+dfsg-1+b1) ... Setting up gubbins (3.4.3-2) ... Processing triggers for libc-bin (2.42-11) ... 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', '-y', 'install', 'gubbins=3.4.3-2'] 0m58.9s INFO: Running scripts post_install 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_install_exceptions'] 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_install_exceptions'] 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'systemd-tmpfiles', '--cat-config'] 0m58.9s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m58.9s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'systemd-tmpfiles', '--cat-config'] 0m59.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 0m59.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 1m0.6s ERROR: WARN: Broken symlinks: /usr/share/doc/libxml2-16/NEWS.gz -> changelog.gz (libxml2-16:amd64) /usr/share/doc/python3.13/python-policy.txt.gz -> ../python3/python-policy.txt.gz (python3) /usr/share/doc/python3.13/changelog.gz -> NEWS.gz (python3.13) 1m1.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', '-ac', '--ignore-obsolete'] 1m3.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', '-ac', '--ignore-obsolete'] 1m3.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m3.7s DUMP: 0.15.9~deb12u1 1m3.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m3.7s INFO: Running adequate version 0.15.9~deb12u1 now. 1m3.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'gubbins'] 1m3.8s DUMP: gubbins: undefined-symbol /usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 => gzclose gubbins: undefined-symbol /usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 => gzread gubbins: undefined-symbol /usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 => gzopen 1m3.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'gubbins'] 1m3.8s ERROR: WARN: Inadequate results from running adequate! gubbins: undefined-symbol /usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 => gzclose gubbins: undefined-symbol /usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 => gzread gubbins: undefined-symbol /usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 => gzopen 1m3.8s ERROR: WARN: Running adequate resulted in inadequate tags found: undefined-symbol 1m3.8s INFO: Running scripts pre_remove 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_exceptions'] 1m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/pre_remove_exceptions'] 1m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m6.7s DUMP: install ok installed apt apt 3.1.15 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.3-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.5 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.17.1-3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-12 install ok installed grep grep 3.12-1 install ok installed gubbins gubbins 3.4.3-2 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b2 install ok installed libaom3:amd64 libaom3 3.13.1-2 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.15 install ok installed libatomic1:amd64 libatomic1 15.2.0-12 install ok installed libattr1:amd64 libattr1 1:2.5.2-3+b1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libavif16:amd64 libavif16 1.3.0-1+b2 install ok installed libblas3:amd64 libblas3 3.12.1-7+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-3 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-11 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-11 install ok installed libc6:amd64 libc6 2.42-11 install ok installed libcairo2:amd64 libcairo2 1.18.4-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b2 install ok installed libcap2:amd64 libcap2 1:2.75-10+b5 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b8 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.18.0-2 install ok installed libdav1d7:amd64 libdav1d7 1.5.3-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libdeflate0:amd64 libdeflate0 1.23-2+b1 install ok installed libedit2:amd64 libedit2 3.1-20251016-1 install ok installed libexpat1:amd64 libexpat1 2.7.4-1 install ok installed libffi8:amd64 libffi8 3.5.2-3+b1 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-3 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b3 install ok installed libfreetype6:amd64 libfreetype6 2.14.1+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-12 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-12 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.86.3-5 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.11-3 install ok installed libgomp1:amd64 libgomp1 15.2.0-12 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-11+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libhwloc15:amd64 libhwloc15 2.12.2-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4+b1 install ok installed libimagequant0:amd64 libimagequant0 4.4.1-1+b1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b1 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2 install ok installed liblapack3:amd64 liblapack3 3.12.1-7+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.17-1 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5+b1 install ok installed libllvm19:amd64 libllvm19 1:19.1.7-20+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-6 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-3 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1.1+b1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.12.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.16.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.16.0-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.4-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libpfm4:amd64 libpfm4 4.13.0+git106-g3e4031b-1+b1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.54-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.11-1+b1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.11-1+b1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-8 install ok installed libraqm0:amd64 libraqm0 0.10.3-1+b1 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-7 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3+b1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-3+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-10 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.5.5-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-12 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 259-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2 install ok installed libtbb12:amd64 libtbb12 2022.3.0-2 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2022.3.0-2 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2022.3.0-2 install ok installed libtiff6:amd64 libtiff6 4.7.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 259-1 install ok installed libunistring5:amd64 libunistring5 1.3-2+b1 install ok installed libuuid1:amd64 libuuid1 2.41.3-3 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1+b1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxml2-16:amd64 libxml2-16 2.15.1+dfsg-2+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0.1922.20260106-1 install ok installed libz3-4:amd64 libz3-4 4.13.3-1+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed llvm-19 llvm-19 1:19.1.7-20+b1 install ok installed llvm-19-linker-tools llvm-19-linker-tools 1:19.1.7-20+b1 install ok installed llvm-19-runtime llvm-19-runtime 1:19.1.7-20+b1 install ok installed login login 1:4.16.0-2+really2.41.3-3 install ok installed login.defs login.defs 1:4.19.2-1 install ok installed mawk mawk 1.3.4.20250131-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.41.3-3 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed netbase netbase 6.5 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.5-1 install ok installed passwd passwd 1:4.19.2-1 install ok installed perl-base perl-base 5.40.1-7 install ok installed python3 python3 3.13.9-3 install ok installed python3-biopython python3-biopython 1.86+dfsg-1+b1 install ok installed python3-cairo python3-cairo 1.27.0-2+b1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.4-2 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-dendropy python3-dendropy 4.6.1-2 install ok installed python3-dill python3-dill 0.4.0-1 install ok installed python3-freetype python3-freetype 2.5.1-2 install ok installed python3-llvmlite python3-llvmlite 0.44.0-1 install ok installed python3-minimal python3-minimal 3.13.9-3 install ok installed python3-multiprocess python3-multiprocess 0.70.18-2 install ok installed python3-numba python3-numba 0.61.2+dfsg-2 install ok installed python3-numpy python3-numpy 1:2.3.5+ds-3 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.3.5+ds-3 install ok installed python3-pil:amd64 python3-pil 12.1.0-1 install ok installed python3-reportlab python3-reportlab 4.4.9-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-4 install ok installed python3-scipy python3-scipy 1.16.3-4 install ok installed python3.13 python3.13 3.13.11-1+b1 install ok installed python3.13-minimal python3.13-minimal 3.13.11-1+b1 install ok installed raxml raxml 8.2.13+dfsg-3 install ok installed readline-common readline-common 8.3-3 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sqv sqv 1.3.0-5 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025c-3 install ok installed util-linux util-linux 2.41.3-3 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+26 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-2 1m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'remove', '--allow-remove-essential', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpfm4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'llvm-19', 'llvm-19-linker-tools', 'llvm-19-runtime', 'media-types', 'netbase', 'python3', 'python3-biopython', 'python3-cairo', 'python3-charset-normalizer', 'python3-decorator', 'python3-dendropy', 'python3-dill', 'python3-freetype', 'python3-llvmlite', 'python3-minimal', 'python3-multiprocess', 'python3-numba', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3.13', 'python3.13-minimal', 'raxml', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'gubbins'] 1m42.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gubbins libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libcom-err2 libcurl4t64 libdav1d7 libdeflate0 libedit2 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwloc15 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libllvm19 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpfm4 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libsvtav1enc2 libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtiff6 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2-16 libxrender1 libyuv0 libz3-4 llvm-19 llvm-19-linker-tools llvm-19-runtime media-types netbase python3 python3-biopython python3-cairo python3-charset-normalizer python3-decorator python3-dendropy python3-dill python3-freetype python3-llvmlite python3-minimal python3-multiprocess python3-numba python3-numpy python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3-scipy python3.13 python3.13-minimal raxml readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 125 to remove and 0 not upgraded. After this operation, 573 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13314 files and directories currently installed.) Removing gubbins (3.4.3-2) ... Removing python3-biopython (1.86+dfsg-1+b1) ... Removing python3-reportlab (4.4.9-1) ... Removing python3-rlpycairo (0.3.0-4) ... Removing python3-cairo (1.27.0-2+b1) ... Removing libcairo2:amd64 (1.18.4-3) ... Removing libfontconfig1:amd64 (2.17.1-3) ... Removing fontconfig-config (2.17.1-3) ... Removing fonts-dejavu-extra (2.37-8) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-urw-base35 (20200910-8) ... Removing python3-pil:amd64 (12.1.0-1) ... Removing libavif16:amd64 (1.3.0-1+b2) ... Removing libgav1-2:amd64 (0.20.0-2) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing libaom3:amd64 (3.13.1-2) ... Removing libraqm0:amd64 (0.10.3-1+b1) ... Removing libharfbuzz0b:amd64 (12.3.2-1) ... Removing libglib2.0-0t64:amd64 (2.86.3-5) ... Removing libatomic1:amd64 (15.2.0-12) ... Removing python3-numba (0.61.2+dfsg-2) ... Removing python3-scipy (1.16.3-4) ... Removing python3-numpy (1:2.3.5+ds-3) ... Removing liblapack3:amd64 (3.12.1-7+b1) ... Removing libblas3:amd64 (3.12.1-7+b1) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-2) ... Removing libfreetype6:amd64 (2.14.1+dfsg-2) ... Removing python3-llvmlite (0.44.0-1) ... Removing llvm-19 (1:19.1.7-20+b1) ... Removing libcurl4t64:amd64 (8.18.0-2) ... Removing libbrotli1:amd64 (1.1.0-2+b9) ... Removing libgssapi-krb5-2:amd64 (1.22.1-2) ... Removing libkrb5-3:amd64 (1.22.1-2) ... Removing libcom-err2:amd64 (1.47.2-3+b8) ... Removing libdav1d7:amd64 (1.5.3-1+b1) ... Removing libtiff6:amd64 (4.7.1-1) ... Removing libdeflate0:amd64 (1.23-2+b1) ... Removing llvm-19-runtime (1:19.1.7-20+b1) ... Removing llvm-19-linker-tools (1:19.1.7-20+b1) ... Removing libllvm19:amd64 (1:19.1.7-20+b1) ... Removing libedit2:amd64 (3.1-20251016-1) ... Removing python3-charset-normalizer (3.4.4-2) ... Removing python3-dendropy (4.6.1-2) ... Removing python3-decorator (5.2.1-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ... Removing libgnutls30t64:amd64 (3.8.11-3) ... Removing libp11-kit0:amd64 (0.25.10-1+b1) ... Removing libfontenc1:amd64 (1:1.1.8-1+b3) ... Removing libfribidi0:amd64 (1.0.16-5) ... Removing libgfortran5:amd64 (15.2.0-12) ... Removing libgomp1:amd64 (15.2.0-12) ... Removing libgraphite2-3:amd64 (1.3.14-11+b1) ... Removing libtbb12:amd64 (2022.3.0-2) ... Removing libtbbbind-2-5:amd64 (2022.3.0-2) ... Removing libhwloc15:amd64 (2.12.2-1+b1) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b2) ... Removing libidn2-0:amd64 (2.3.8-4+b1) ... Removing libimagequant0:amd64 (4.4.1-1+b1) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libyuv0:amd64 (0.0.1922.20260106-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libk5crypto3:amd64 (1.22.1-2) ... Removing libkeyutils1:amd64 (1.6.3-6+b1) ... Removing libkrb5support0:amd64 (1.22.1-2) ... Removing liblcms2-2:amd64 (2.17-1) ... Removing libldap2:amd64 (2.6.10+dfsg-1+b1) ... Removing liblerc4:amd64 (4.0.0+ds-5+b1) ... Removing libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Removing libnghttp3-9:amd64 (1.12.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Removing libngtcp2-16:amd64 (1.16.0-1) ... Removing libopenjp2-7:amd64 (2.5.4-1) ... Removing libpfm4:amd64 (4.13.0+git106-g3e4031b-1+b1) ... Removing libpixman-1-0:amd64 (0.46.4-1+b1) ... Removing libpng16-16t64:amd64 (1.6.54-1) ... Removing libqhull-r8.0:amd64 (2020.2-8) ... Removing librav1e0.8:amd64 (0.8.1-7) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Removing libwebpmux3:amd64 (1.5.0-0.1+b1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1+b1) ... Removing libwebp7:amd64 (1.5.0-0.1+b1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b1) ... Removing libssh2-1t64:amd64 (1.11.1-1+b1) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libtasn1-6:amd64 (4.21.0-2) ... Removing libtbbmalloc2:amd64 (2022.3.0-2) ... Removing libunistring5:amd64 (1.3-2+b1) ... Removing libxrender1:amd64 (1:0.9.12-1+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libx11-6:amd64 (2:1.8.12-1+b1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b1) ... Removing libxdmcp6:amd64 (1:1.1.5-2) ... Removing libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Removing libz3-4:amd64 (4.13.3-1+b1) ... Removing python3-multiprocess (0.70.18-2) ... Removing python3-dill (0.4.0-1) ... Removing python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... Removing raxml (8.2.13+dfsg-3) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing python3 (3.13.9-3) ... Removing python3.13 (3.13.11-1+b1) ... Removing python3-minimal (3.13.9-3) ... Removing python3.13-minimal (3.13.11-1+b1) ... Removing libexpat1:amd64 (2.7.4-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3) ... Removing libpython3.13-stdlib:amd64 (3.13.11-1+b1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-3+b1) ... Removing libncursesw6:amd64 (6.6+20251231-1) ... Removing libpython3.13-minimal:amd64 (3.13.11-1+b1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-9) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-3) ... Processing triggers for libc-bin (2.42-11) ... 1m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'remove', '--allow-remove-essential', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpfm4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'llvm-19', 'llvm-19-linker-tools', 'llvm-19-runtime', 'media-types', 'netbase', 'python3', 'python3-biopython', 'python3-cairo', 'python3-charset-normalizer', 'python3-decorator', 'python3-dendropy', 'python3-dill', 'python3-freetype', 'python3-llvmlite', 'python3-minimal', 'python3-multiprocess', 'python3-numba', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3.13', 'python3.13-minimal', 'raxml', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'gubbins'] 1m42.6s INFO: Running scripts post_remove 1m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_remove_exceptions'] 1m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_remove_exceptions'] 1m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpfm4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'llvm-19', 'llvm-19-linker-tools', 'llvm-19-runtime', 'media-types', 'netbase', 'python3', 'python3-biopython', 'python3-cairo', 'python3-charset-normalizer', 'python3-decorator', 'python3-dendropy', 'python3-dill', 'python3-freetype', 'python3-llvmlite', 'python3-minimal', 'python3-multiprocess', 'python3-numba', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3.13', 'python3.13-minimal', 'raxml', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 1m43.0s DUMP: (Reading database ... 4966 files and directories currently installed.) Purging configuration files for fontconfig-config (2.17.1-3) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... dpkg: warning: ignoring request to remove fonts-dejavu-extra which is not installed Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove libabsl20240722 which is not installed dpkg: warning: ignoring request to remove libaom3 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libavif16 which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libedit2 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfontenc1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgav1-2 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.86.3-5) ... dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libhwloc15 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libimagequant0 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblcms2-2 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove libllvm19 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libopenjp2-7 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpfm4 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.11-1+b1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed dpkg: warning: ignoring request to remove libraqm0 which is not installed dpkg: warning: ignoring request to remove librav1e0.8 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-3+b1) ... dpkg: warning: ignoring request to remove librtmp1 which is not installed dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libsvtav1enc2 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtbb12 which is not installed dpkg: warning: ignoring request to remove libtbbbind-2-5 which is not installed dpkg: warning: ignoring request to remove libtbbmalloc2 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpdemux2 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libyuv0 which is not installed dpkg: warning: ignoring request to remove libz3-4 which is not installed dpkg: warning: ignoring request to remove llvm-19 which is not installed dpkg: warning: ignoring request to remove llvm-19-linker-tools which is not installed dpkg: warning: ignoring request to remove llvm-19-runtime which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.5) ... Purging configuration files for python3 (3.13.9-3) ... dpkg: warning: ignoring request to remove python3-biopython which is not installed dpkg: warning: ignoring request to remove python3-cairo which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-dendropy which is not installed dpkg: warning: ignoring request to remove python3-dill which is not installed dpkg: warning: ignoring request to remove python3-freetype which is not installed dpkg: warning: ignoring request to remove python3-llvmlite which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-multiprocess which is not installed dpkg: warning: ignoring request to remove python3-numba which is not installed Purging configuration files for python3-numpy (1:2.3.5+ds-3) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-pil which is not installed dpkg: warning: ignoring request to remove python3-reportlab which is not installed dpkg: warning: ignoring request to remove python3-rlpycairo which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3.13 which is not installed Purging configuration files for python3.13-minimal (3.13.11-1+b1) ... dpkg: warning: ignoring request to remove raxml which is not installed Purging configuration files for readline-common (8.3-3) ... Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xfonts-encodings which is not installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... 1m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwloc15:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpfm4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'llvm-19', 'llvm-19-linker-tools', 'llvm-19-runtime', 'media-types', 'netbase', 'python3', 'python3-biopython', 'python3-cairo', 'python3-charset-normalizer', 'python3-decorator', 'python3-dendropy', 'python3-dill', 'python3-freetype', 'python3-llvmlite', 'python3-minimal', 'python3-multiprocess', 'python3-numba', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3-scipy', 'python3.13', 'python3.13-minimal', 'raxml', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 1m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--purge', 'gubbins'] 1m43.0s DUMP: dpkg: warning: ignoring request to remove gubbins which is not installed 1m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--purge', 'gubbins'] 1m43.0s INFO: Running scripts post_purge 1m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_purge_exceptions'] 1m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_purge_exceptions'] 1m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--purge', '--pending'] 1m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--purge', '--pending'] 1m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--remove', '--pending'] 1m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg', '--remove', '--pending'] 1m43.1s INFO: Running scripts post_test 1m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_test_exceptions'] 1m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'tmp/scripts/post_test_exceptions'] 1m43.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 1m43.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 1m43.6s DEBUG: No broken symlinks as far as we can find. 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-divert', '--list'] 1m43.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'dpkg-divert', '--list'] 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'clean'] 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp3wysxts', 'apt-get', 'clean'] 1m43.6s DEBUG: Recording chroot state 1m44.2s INFO: PASS: Installation and purging test. 1m44.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/shm'] 1m44.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/shm'] 1m44.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/console'] 1m44.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/console'] 1m44.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/ptmx'] 1m44.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/ptmx'] 1m44.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/pts'] 1m44.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/dev/pts'] 1m44.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/proc'] 1m44.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp3wysxts/proc'] 1m44.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 1m44.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpp3wysxts'] 1m44.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpp3wysxts 1m44.7s INFO: PASS: All tests. 1m44.7s INFO: piuparts run ends. ret=0 End: 2026-02-01 09:49:19 GMT