Start: 2024-02-25 10:00:20 GMT Package: libgenomicsdb-java Source: genomicsdb Version: 1.5.0-2 Installed-Size: 461 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-io-java (>= 2.11.0), libgetopt-java, libgoogle-gson-java, libguava-java, libhtsjdk-java (>= 3.0.2), libjson-simple-java, liblog4j2-java (>= 2.19.0), libprotobuf-java, libgenomicsdb-jni (>= 1.5.0-2), libgenomicsdb-jni (<< 1.5.0-2.1~) Description: sparse array storage library for genomics (Java library) Homepage: https://www.genomicsdb.org/ Description-md5: 6a43860137619ae15d009235c0ac2bc5 Section: java Priority: optional Filename: pool/main/g/genomicsdb/libgenomicsdb-java_1.5.0-2_all.deb Size: 389108 MD5sum: 84842d672729c698b178fc6ead6d7e9d SHA256: 2b06acc20c1eb7a3417c6fbda617472be53d12e840ad283319285662f65f4dbe Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libgenomicsdb-java=1.5.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libgenomicsdb-java=1.5.0-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpsybe5612 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpsybe5612 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpsybe5612', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpsybe5612', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpsybe5612/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpsybe5612/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpsybe5612/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmpsybe5612/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'update'] 0m4.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9752 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7153 kB] Fetched 17.1 MB in 3s (5318 kB/s) Reading package lists... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'update'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libpcre2-8-0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 262 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 262 kB in 0s (7124 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5224 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4+b1) over (10.42-4) ... Setting up libpcre2-8-0:amd64 (10.42-4+b1) ... Processing triggers for libc-bin (2.37-15) ... 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: 733ff7f042d8aba522f3f9d3244589f6 - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m6.6s DUMP: dpkg-query: no packages found matching systemd dpkg-query: no packages found matching systemd-sysv dpkg-query: no packages found matching sysv-rc 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_minimize'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_minimize'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_zz_backports'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_setup_zz_backports'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'clean'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'clean'] 0m7.6s DEBUG: Recording chroot state 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DUMP: install ok installed apt apt 2.7.12 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-divert', '--list'] 0m8.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-divert', '--list'] 0m8.2s INFO: Running scripts is_testable 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s INFO: apt-cache does not know about any of the requested packages 0m8.2s INFO: Running scripts pre_test 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_test_root_password'] 0m8.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_test_root_password'] 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m9.4s DEBUG: No broken symlinks as far as we can find. 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m10.5s DEBUG: No broken symlinks as far as we can find. 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-cache', 'policy'] 0m11.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-cache', 'policy'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m11.7s DUMP: libgenomicsdb-java: Installed: (none) Candidate: 1.5.0-2 Version table: 1.5.0-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-cache', 'policy', 'libgenomicsdb-java'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', '-y', 'install', 'libgenomicsdb-java=1.5.0-2'] 0m21.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser ibverbs-providers libapache-pom-java libatinject-jsr330-api-java libatomic1 libbrotli1 libbsd0 libcbor0.10 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-logging-java libcommons-parent-java libcurl4 libedit2 liberror-prone-java libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfmt9 libgenomicsdb-jni libgenomicsdb0 libgetopt-java libgomp1 libgoogle-gson-java libgssapi-krb5-2 libguava-java libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjson-simple-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblightcouch-java liblog4j2-java libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libmongodb-java libmunge2 libmuparserx4.0.11 libncbi-ngs3 libncbi-vdb3 libnghttp2-14 libngs-java libngs-jni libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libprotobuf-java libprotobuf32 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ncbi-vdb-data ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client Suggested packages: liblocale-gettext-perl perl cron quota libatinject-jsr330-api-java-doc libasm-java libxz-java libcommons-io-java-doc libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java libgoogle-gson-java-doc krb5-doc krb5-user picard-tools python3 libhwloc-contrib-plugins libjson-simple-doc libjsr305-java-doc libactivation-java libcommons-csv-java libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java libjctools-java libjeromq-java libmail-java libwoodstox-java libngs-java-doc pciutils rhino opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass Recommended packages: ca-certificates krb5-locales libldap-common publicsuffix libsasl2-modules xauth The following NEW packages will be installed: adduser ibverbs-providers libapache-pom-java libatinject-jsr330-api-java libatomic1 libbrotli1 libbsd0 libcbor0.10 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-logging-java libcommons-parent-java libcurl4 libedit2 liberror-prone-java libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfmt9 libgenomicsdb-java libgenomicsdb-jni libgenomicsdb0 libgetopt-java libgomp1 libgoogle-gson-java libgssapi-krb5-2 libguava-java libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjson-simple-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblightcouch-java liblog4j2-java libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libmongodb-java libmunge2 libmuparserx4.0.11 libncbi-ngs3 libncbi-vdb3 libnghttp2-14 libngs-java libngs-jni libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libprotobuf-java libprotobuf32 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ncbi-vdb-data ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 42.7 MB of archives. After this operation, 118 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libcbor0.10 amd64 0.10.2-1.2 [28.2 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libfido2-1 amd64 1.14.0-1 [77.4 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:9 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:11 http://deb.debian.org/debian sid/main amd64 openssh-client amd64 1:9.6p1-3 [975 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 48.0-1.1 [61.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 48.0-1.1 [340 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libapache-pom-java all 29-2 [5276 B] Get:17 http://deb.debian.org/debian sid/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:18 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14-20240201-3 [9292 B] Get:19 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.16.0-1 [297 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 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libmongodb-java all 3.6.3-2 [1901 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get:67 http://deb.debian.org/debian sid/main amd64 liblog4j2-java all 2.19.0-2 [2310 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libprotobuf-java all 3.21.12-8 [1259 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libmuparserx4.0.11 amd64 4.0.11-2+b1 [197 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libprotobuf32 amd64 3.21.12-8+b1 [964 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libmunge2 amd64 0.5.15-3+b1 [20.0 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 525.147.05-1 [13.5 kB] Get:84 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [39.7 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libpmix2 amd64 5.0.1-4+b1 [645 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.16.0+ds-1 [968 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libopenmpi3 amd64 4.1.6-5 [2427 kB] Get:89 http://deb.debian.org/debian sid/main amd64 openmpi-common all 4.1.6-5 [168 kB] Get:90 http://deb.debian.org/debian sid/main amd64 openmpi-bin amd64 4.1.6-5 [226 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libgenomicsdb0 amd64 1.5.0-2 [1577 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libgenomicsdb-jni amd64 1.5.0-2 [115 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libgenomicsdb-java all 1.5.0-2 [389 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.7 MB in 0s (91.2 MB/s) Selecting previously unselected package adduser. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5227 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package libbsd0:amd64. (Reading database ... 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Selecting previously unselected package libngs-java:amd64. Preparing to unpack .../53-libngs-java_3.0.3+dfsg-6_amd64.deb ... Unpacking libngs-java:amd64 (3.0.3+dfsg-6) ... Selecting previously unselected package librhino-java. Preparing to unpack .../54-librhino-java_1.7.14-2.1_all.deb ... Unpacking librhino-java (1.7.14-2.1) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../55-libsnappy1v5_1.1.10-1+b1_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.1.10-1+b1) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../56-libsnappy-jni_1.1.10.5-1_amd64.deb ... Unpacking libsnappy-jni (1.1.10.5-1) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../57-libsnappy-java_1.1.10.5-1_all.deb ... Unpacking libsnappy-java (1.1.10.5-1) ... Selecting previously unselected package libhtsjdk-java. Preparing to unpack .../58-libhtsjdk-java_4.1.0+dfsg-1_all.deb ... Unpacking libhtsjdk-java (4.1.0+dfsg-1) ... 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Unpacking libhwloc15:amd64 (2.10.0-1+b1) ... Selecting previously unselected package libmunge2:amd64. Preparing to unpack .../71-libmunge2_0.5.15-3+b1_amd64.deb ... Unpacking libmunge2:amd64 (0.5.15-3+b1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../72-libpciaccess0_0.17-3_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../73-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../74-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../75-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../76-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... 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Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../83-libhwloc-plugins_2.10.0-1+b1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.10.0-1+b1) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../84-libpmix2_5.0.1-4+b1_amd64.deb ... Unpacking libpmix2:amd64 (5.0.1-4+b1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../85-libucx0_1.16.0+ds-1_amd64.deb ... Unpacking libucx0:amd64 (1.16.0+ds-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../86-libopenmpi3_4.1.6-5_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.6-5) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../87-openmpi-common_4.1.6-5_all.deb ... Unpacking openmpi-common (4.1.6-5) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../88-openmpi-bin_4.1.6-5_amd64.deb ... Unpacking openmpi-bin (4.1.6-5) ... Selecting previously unselected package libgenomicsdb0. Preparing to unpack .../89-libgenomicsdb0_1.5.0-2_amd64.deb ... Unpacking libgenomicsdb0 (1.5.0-2) ... Selecting previously unselected package libgenomicsdb-jni. Preparing to unpack .../90-libgenomicsdb-jni_1.5.0-2_amd64.deb ... Unpacking libgenomicsdb-jni (1.5.0-2) ... Selecting previously unselected package libgenomicsdb-java. Preparing to unpack .../91-libgenomicsdb-java_1.5.0-2_all.deb ... Unpacking libgenomicsdb-java (1.5.0-2) ... Setting up libpciaccess0:amd64 (0.17-3) ... Setting up libslf4j-java (1.7.32-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libpsl5:amd64 (0.21.2-1+b1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up libcbor0.10:amd64 (0.10.2-1.2) ... Setting up libgetopt-java (1.0.14+dfsg-6) ... Setting up libgoogle-gson-java (2.10.1-1) ... Setting up libmjson-java (1.4.0-3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libnghttp2-14:amd64 (1.59.0-1) ... Setting up libmuparserx4.0.11:amd64 (4.0.11-2+b1) ... Setting up libjson-simple-java (2.3.0-1) ... Setting up libgomp1:amd64 (14-20240201-3) ... Setting up libsnappy1v5:amd64 (1.1.10-1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Setting up librhino-java (1.7.14-2.1) ... Setting up libmunge2:amd64 (0.5.15-3+b1) ... Setting up libmbedcrypto7:amd64 (2.28.7-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libapache-pom-java (29-2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libhwloc15:amd64 (2.10.0-1+b1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (14-20240201-3) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libfmt9:amd64 (9.1.0+ds1-2) ... Setting up libnuma1:amd64 (2.0.18-1) ... Setting up libprotobuf32:amd64 (3.21.12-8+b1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.3) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.6-5) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up libssh2-1:amd64 (1.11.0-4) ... Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libhttpcore-java (4.4.16-1) ... Setting up libfido2-1:amd64 (1.14.0-1) ... Setting up libbsd0:amd64 (0.11.8-1) ... Setting up libsnappy-jni (1.1.10.5-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libmbedx509-1:amd64 (2.28.7-1) ... Setting up libmbedtls14:amd64 (2.28.7-1) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.3) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libcurl4:amd64 (8.6.0-3) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libsnappy-java (1.1.10.5-1) ... Setting up libcommons-codec-java (1.16.0-1) ... Setting up libncbi-ngs3:amd64 (3.0.3+dfsg-6) ... Setting up libibverbs1:amd64 (48.0-1.1) ... Setting up libngs-jni:amd64 (3.0.3+dfsg-6) ... Setting up libcommons-compress-java (1.25.0-1) ... Setting up ibverbs-providers:amd64 (48.0-1.1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up openssh-client (1:9.6p1-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libxnvctrl0:amd64 (525.147.05-1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libngs-java:amd64 (3.0.3+dfsg-6) ... Setting up libhtsjdk-java (4.1.0+dfsg-1) ... Setting up librdmacm1:amd64 (48.0-1.1) ... Setting up libucx0:amd64 (1.16.0+ds-1) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up libhwloc-plugins:amd64 (2.10.0-1+b1) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libpmix2:amd64 (5.0.1-4+b1) ... Setting up libopenmpi3:amd64 (4.1.6-5) ... Setting up openmpi-bin (4.1.6-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libgenomicsdb0 (1.5.0-2) ... Setting up libgenomicsdb-jni (1.5.0-2) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libprotobuf-java (3.21.12-8) ... Setting up libgenomicsdb-java (1.5.0-2) ... Processing triggers for libc-bin (2.37-15) ... 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', '-y', 'install', 'libgenomicsdb-java=1.5.0-2'] 0m21.2s INFO: Running scripts post_install 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_install_exceptions'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_install_exceptions'] 0m21.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m21.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m22.7s ERROR: WARN: Broken symlinks: /usr/share/doc/libxml2/NEWS.gz -> changelog.gz (libxml2:amd64) 0m22.7s INFO: /bin converted to /usr/bin by /usr merge 0m22.8s INFO: /lib converted to /usr/lib by /usr merge 0m22.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m22.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m22.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m22.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m22.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m22.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m22.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m22.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m22.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m22.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m22.8s INFO: /sbin converted to /usr/sbin by /usr merge 0m23.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpsybe5612', '-ac', '--ignore-obsolete'] 0m24.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpsybe5612', '-ac', '--ignore-obsolete'] 0m24.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.6s DUMP: 0.15.6 0m24.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.6s INFO: Running adequate version 0.15.6 now. 0m24.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'libgenomicsdb-java'] 0m24.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'libgenomicsdb-java'] 0m24.7s INFO: Running scripts pre_remove 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.0s DUMP: UNOWNED SYMLINK /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_exceptions'] 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/pre_remove_exceptions'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.3s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.12 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed ibverbs-providers:amd64 ibverbs-providers 48.0-1.1 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapache-pom-java libapache-pom-java 29-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatomic1:amd64 libatomic1 14-20240201-3 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.8-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-1.2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcommons-codec-java libcommons-codec-java 1.16.0-1 install ok installed libcommons-compress-java libcommons-compress-java 1.25.0-1 install ok installed libcommons-io-java libcommons-io-java 2.11.0-2 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl4:amd64 libcurl4 8.6.0-3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libedit2:amd64 libedit2 3.1-20230828-1 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-8 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-8 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libfabric1:amd64 libfabric1 1.17.0-3 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfido2-1:amd64 libfido2-1 1.14.0-1 install ok installed libfmt9:amd64 libfmt9 9.1.0+ds1-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgenomicsdb-java libgenomicsdb-java 1.5.0-2 install ok installed libgenomicsdb-jni libgenomicsdb-jni 1.5.0-2 install ok installed libgenomicsdb0 libgenomicsdb0 1.5.0-2 install ok installed libgetopt-java libgetopt-java 1.0.14+dfsg-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgoogle-gson-java libgoogle-gson-java 2.10.1-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.0+dfsg-1 install ok installed libhttpclient-java libhttpclient-java 4.5.14-1 install ok installed libhttpcore-java libhttpcore-java 4.4.16-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.10.0-1+b1 install ok installed libhwloc15:amd64 libhwloc15 2.10.0-1+b1 install ok installed libibverbs1:amd64 libibverbs1 48.0-1.1 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjson-simple-java libjson-simple-java 2.3.0-1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblightcouch-java liblightcouch-java 0.2.0-1 install ok installed liblog4j2-java liblog4j2-java 2.19.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.7-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.7-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.7-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmjson-java libmjson-java 1.4.0-3 install ok installed libmongodb-java libmongodb-java 3.6.3-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmunge2:amd64 libmunge2 0.5.15-3+b1 install ok installed libmuparserx4.0.11:amd64 libmuparserx4.0.11 4.0.11-2+b1 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.3+dfsg-6 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.2+dfsg-2 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libngs-java:amd64 libngs-java 3.0.3+dfsg-6 install ok installed libngs-jni:amd64 libngs-jni 3.0.3+dfsg-6 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.3 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.3 install ok installed libnuma1:amd64 libnuma1 2.0.18-1 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.6-5 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpmix2:amd64 libpmix2 5.0.1-4+b1 install ok installed libprotobuf-java libprotobuf-java 3.21.12-8 install ok installed libprotobuf32:amd64 libprotobuf32 3.21.12-8+b1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.3 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed librdmacm1:amd64 librdmacm1 48.0-1.1 install ok installed librhino-java librhino-java 1.7.14-2.1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libslf4j-java libslf4j-java 1.7.32-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsnappy-java libsnappy-java 1.1.10.5-1 install ok installed libsnappy-jni libsnappy-jni 1.1.10.5-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.10-1+b1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libucx0:amd64 libucx0 1.16.0+ds-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxnvctrl0:amd64 libxnvctrl0 525.147.05-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.2+dfsg-2 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1 install ok installed openmpi-bin openmpi-bin 4.1.6-5 install ok installed openmpi-common openmpi-common 4.1.6-5 install ok installed openssh-client openssh-client 1:9.6p1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'remove', 'adduser', 'ibverbs-providers:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfmt9:amd64', 'libgenomicsdb-jni', 'libgenomicsdb0', 'libgetopt-java', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.11:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libprotobuf-java', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'libgenomicsdb-java'] 0m28.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser ibverbs-providers libapache-pom-java libatinject-jsr330-api-java libatomic1 libbrotli1 libbsd0 libcbor0.10 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-logging-java libcommons-parent-java libcurl4 libedit2 liberror-prone-java libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfmt9 libgenomicsdb-java libgenomicsdb-jni libgenomicsdb0 libgetopt-java libgomp1 libgoogle-gson-java libgssapi-krb5-2 libguava-java libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibverbs1 libicu72 libjson-simple-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblightcouch-java liblog4j2-java libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libmongodb-java libmunge2 libmuparserx4.0.11 libncbi-ngs3 libncbi-vdb3 libnghttp2-14 libngs-java libngs-jni libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libprotobuf-java libprotobuf32 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ncbi-vdb-data ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client 0 upgraded, 0 newly installed, 93 to remove and 0 not upgraded. After this operation, 118 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7332 files and directories currently installed.) Removing libgenomicsdb-java (1.5.0-2) ... Removing libgenomicsdb-jni (1.5.0-2) ... Removing libgenomicsdb0 (1.5.0-2) ... Removing openmpi-bin (4.1.6-5) ... Removing libopenmpi3:amd64 (4.1.6-5) ... Removing libucx0:amd64 (1.16.0+ds-1) ... Removing libfabric1:amd64 (1.17.0-3) ... Removing librdmacm1:amd64 (48.0-1.1) ... Removing openssh-client (1:9.6p1-3) ... Removing ibverbs-providers:amd64 (48.0-1.1) ... Removing libhtsjdk-java (4.1.0+dfsg-1) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing liblog4j2-java (2.19.0-2) ... Removing liblightcouch-java (0.2.0-1) ... Removing libhttpclient-java (4.5.14-1) ... Removing libcommons-logging-java (1.3.0-1) ... Removing libcommons-compress-java (1.25.0-1) ... Removing libprotobuf-java (3.21.12-8) ... Removing libatomic1:amd64 (14-20240201-3) ... Removing libcurl4:amd64 (8.6.0-3) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libpmix2:amd64 (5.0.1-4+b1) ... Removing libhwloc-plugins:amd64 (2.10.0-1+b1) ... Removing libxnvctrl0:amd64 (525.147.05-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libedit2:amd64 (3.1-20230828-1) ... Removing libbsd0:amd64 (0.11.8-1) ... Removing libfido2-1:amd64 (1.14.0-1) ... Removing libcbor0.10:amd64 (0.10.2-1.2) ... Removing libcommons-codec-java (1.16.0-1) ... Removing libcommons-io-java (2.11.0-2) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Removing libfmt9:amd64 (9.1.0+ds1-2) ... Removing libgetopt-java (1.0.14+dfsg-6) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing libgoogle-gson-java (2.10.1-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Removing libhttpcore-java (4.4.16-1) ... Removing libhwloc15:amd64 (2.10.0-1+b1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libjson-simple-java (2.3.0-1) ... Removing libkrb5-3:amd64 (1.20.1-5+b1) ... Removing libk5crypto3:amd64 (1.20.1-5+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-5+b1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing libngs-java:amd64 (3.0.3+dfsg-6) ... Removing libngs-jni:amd64 (3.0.3+dfsg-6) ... Removing libncbi-ngs3:amd64 (3.0.3+dfsg-6) ... Removing libncbi-vdb3:amd64 (3.0.2+dfsg-2) ... Removing libmbedtls14:amd64 (2.28.7-1) ... Removing libmbedx509-1:amd64 (2.28.7-1) ... Removing libmbedcrypto7:amd64 (2.28.7-1) ... Removing libmjson-java (1.4.0-3) ... Removing libmongodb-java (3.6.3-2) ... Removing libmunge2:amd64 (0.5.15-3+b1) ... Removing libmuparserx4.0.11:amd64 (4.0.11-2+b1) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.18-1) ... Removing libpciaccess0:amd64 (0.17-3) ... Removing libprotobuf32:amd64 (3.21.12-8+b1) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing librhino-java (1.7.14-2.1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing libslf4j-java (1.7.32-1) ... Removing libsnappy-java (1.1.10.5-1) ... Removing libsnappy-jni (1.1.10.5-1) ... Removing libsnappy1v5:amd64 (1.1.10-1+b1) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ncbi-vdb-data (3.0.2+dfsg-2) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1) ... Removing openmpi-common (4.1.6-5) ... Removing libibverbs1:amd64 (48.0-1.1) ... Removing adduser (3.137) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (29-2) ... Removing libnl-route-3-200:amd64 (3.7.0-0.3) ... Removing libnl-3-200:amd64 (3.7.0-0.3) ... Removing liberror-prone-java (2.18.0-1) ... Removing libguava-java (32.0.1-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libjsr305-java (0.1~+svn49-11) ... Processing triggers for libc-bin (2.37-15) ... 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'remove', 'adduser', 'ibverbs-providers:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfmt9:amd64', 'libgenomicsdb-jni', 'libgenomicsdb0', 'libgetopt-java', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.11:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libprotobuf-java', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'libgenomicsdb-java'] 0m28.6s INFO: Running scripts post_remove 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_remove_exceptions'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_remove_exceptions'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--purge', 'adduser', 'ibverbs-providers:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfmt9:amd64', 'libgenomicsdb-jni', 'libgenomicsdb0', 'libgetopt-java', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.11:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libprotobuf-java', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client'] 0m28.7s DUMP: (Reading database ... 5256 files and directories currently installed.) Purging configuration files for adduser (3.137) ... Purging configuration files for ibverbs-providers:amd64 (48.0-1.1) ... dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcbor0.10 which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfmt9 which isn't installed dpkg: warning: ignoring request to remove libgenomicsdb-jni which isn't installed dpkg: warning: ignoring request to remove libgenomicsdb0 which isn't installed dpkg: warning: ignoring request to remove libgetopt-java which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgoogle-gson-java which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libjson-simple-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblightcouch-java which isn't installed dpkg: warning: ignoring request to remove liblog4j2-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed dpkg: warning: ignoring request to remove libmjson-java which isn't installed dpkg: warning: ignoring request to remove libmongodb-java which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libmuparserx4.0.11 which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.3) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libprotobuf-java which isn't installed dpkg: warning: ignoring request to remove libprotobuf32 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.3) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (4.1.6-5) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:9.6p1-3) ... 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--purge', 'adduser', 'ibverbs-providers:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcbor0.10:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcurl4:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libfmt9:amd64', 'libgenomicsdb-jni', 'libgenomicsdb0', 'libgetopt-java', 'libgomp1:amd64', 'libgoogle-gson-java', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libjson-simple-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmongodb-java', 'libmunge2:amd64', 'libmuparserx4.0.11:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libprotobuf-java', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libssh2-1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ncbi-vdb-data', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--purge', 'libgenomicsdb-java'] 0m28.7s DUMP: dpkg: warning: ignoring request to remove libgenomicsdb-java which isn't installed 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--purge', 'libgenomicsdb-java'] 0m28.7s INFO: Running scripts post_purge 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_purge_exceptions'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_purge_exceptions'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--purge', '--pending'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--purge', '--pending'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--remove', '--pending'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg', '--remove', '--pending'] 0m28.7s INFO: Running scripts post_test 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_test_exceptions'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'tmp/scripts/post_test_exceptions'] 0m28.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m29.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m29.8s ERROR: WARN: Broken symlinks: /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-divert', '--list'] 0m29.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'dpkg-divert', '--list'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'clean'] 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsybe5612', 'apt-get', 'clean'] 0m29.9s DEBUG: Recording chroot state 0m30.5s INFO: Warning: Package purging left files on system: /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 not owned 0m30.6s INFO: PASS: Installation and purging test. 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/shm'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/shm'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/console'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/console'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/ptmx'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/ptmx'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/pts'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/dev/pts'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/proc'] 0m31.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsybe5612/proc'] 0m31.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m31.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpsybe5612'] 0m31.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpsybe5612 0m31.2s INFO: PASS: All tests. 0m31.2s INFO: piuparts run ends. ret=0 End: 2024-02-25 10:00:52 GMT