Start: 2024-02-12 21:50:12 GMT Package: multiqc Version: 1.18+dfsg-1 Installed-Size: 3530 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-click, python3-coloredlogs, python3-humanize, python3-importlib-metadata, python3-jinja2, python3-markdown, python3-matplotlib, python3-networkx, python3-numpy, python3-packaging, python3-pyaml-env, python3-requests, python3-rich, python3-rich-click, python3-spectra, python3-yaml, python3:any, python3-distutils, python3-lzstring, python3-simplejson, python3-humanfriendly, fonts-glyphicons-halflings, libjs-bootstrap, libjs-jquery, libjs-jquery-tablesorter, libjs-jquery-ui Recommends: node-clipboard, libjs-filesaver, pandoc, texlive-xetex Enhances: adapterremoval, afterqc, bamtools, bbmap, bcftools, bcl2fastq, biobambam2, biobloomtools, biscuit, bismark, bowtie, bowtie2, busco, clipandmerge, clusterflow, conpair, cutadapt, damageprofiler, dedup, deeptools, disambiguate, dragen, fastp, fastq-screen, fastqc, featurecounts, fgbio, flash, flexbar, gatk, goleft-indexcov, happy, hicexplorer, hicpro, hicup, hisat2, homer, htseq, interop, ivar, jellyfish, kaiju, kallisto, kat, kraken, leehom, longranger, macs2, malt, methylqa, minionqc, mirtop, mirtrace, mosdepth, mtnucratio, multivcfanalyzer, peddy, phantompeakqualtools, picard-tools, preseq, prokka, pycoqc, qorts, qualimap, quast, rna-seqc, rna-star, rockhopper, rsem, rseqc, salmon, samblaster, samtools, sargasso, seqyclean, sexdeterrmine, sickle, skewer, slamdunk, snpeff, snpsplit, somalier, sortmerna, stacks, supernova, theta2, trimmomatic, varscan2, vcftools, verifybamid Description: output integration for RNA sequencing across tools and samples Homepage: https://multiqc.info/ Description-md5: 479ea16466b90a154d8788f4dc9c0ef1 Section: science Priority: optional Filename: pool/main/m/multiqc/multiqc_1.18+dfsg-1_all.deb Size: 712572 MD5sum: bb37bf7e26855339e081b2b73081c520 SHA256: 4093b9a6703ba7b4704e50a531d53946fc5aa937f86128def739f28ba5790891 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt multiqc=1.18+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt multiqc=1.18+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp546e2npy 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp546e2npy 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp546e2npy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp546e2npy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp546e2npy/proc'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp546e2npy/proc'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/pts'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/pts'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/ptmx'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/ptmx'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/console'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/console'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/shm'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/shm'] 0m0.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.7s DEBUG: Created policy-rc.d and chmodded it. 0m0.7s DEBUG: Created resolv.conf. 0m0.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp546e2npy/tmp/scripts/ 0m0.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmp546e2npy/tmp/scripts/ 0m0.8s INFO: Running scripts post_chroot_unpack 0m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'update'] 0m5.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9738 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7142 kB] Fetched 17.1 MB in 3s (5272 kB/s) Reading package lists... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'update'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: 58b1c5acc8139cd6dd084ddb1ebba682 - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m6.6s DUMP: dpkg-query: no packages found matching systemd dpkg-query: no packages found matching systemd-sysv dpkg-query: no packages found matching sysv-rc 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_dummy_users'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'clean'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'clean'] 0m7.6s DEBUG: Recording chroot state 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DUMP: install ok installed apt apt 2.7.10 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.85 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-divert', '--list'] 0m8.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-divert', '--list'] 0m8.3s INFO: Running scripts is_testable 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s INFO: apt-cache does not know about any of the requested packages 0m8.3s INFO: Running scripts pre_test 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_test_root_password'] 0m8.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_test_root_password'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 0m9.5s DEBUG: No broken symlinks as far as we can find. 0m9.5s INFO: Running scripts pre_install 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_database-server'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_database-server'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_extras'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_extras'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 0m10.6s DEBUG: No broken symlinks as far as we can find. 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-cache', 'policy'] 0m11.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-cache', 'policy'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-cache', 'policy', 'multiqc'] 0m11.8s DUMP: multiqc: Installed: (none) Candidate: 1.18+dfsg-1 Version table: 1.18+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-cache', 'policy', 'multiqc'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', '-y', 'install', 'multiqc=1.18+dfsg-1'] 1m28.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: blt ca-certificates fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libncursesw6 libnsl2 libopenjp2-7 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 libreadline8 libsharpyuv0 libsqlite3-0 libtcl8.6 libtiff6 libtirpc-common libtirpc3 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 media-types netbase openssl python-matplotlib-data python3 python3-appdirs python3-attr python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-coloredlogs python3-colormath python3-contourpy python3-cycler python3-dateutil python3-decorator python3-distutils python3-fonttools python3-fs python3-humanfriendly python3-humanize python3-idna python3-importlib-metadata python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-pyaml-env python3-pygments python3-pyparsing python3-requests python3-rich python3-rich-click python3-scipy python3-simplejson python3-six python3-spectra python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zipp python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common tk8.6-blt2.5 unicode-data x11-common Suggested packages: blt-demo low-memory-monitor krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python3-doc python3-venv python-attr-doc python-charset-normalizer-doc python-cycler-doc python-jinja2-doc python-lxml-doc python-markdown-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev python3-pytest python-pil-doc python3-setuptools python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc binutils binfmt-support python3.12-venv python3.12-doc readline-doc Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2 node-clipboard libjs-filesaver pandoc texlive-xetex python3-babel python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-olefile g++ | c++-compiler isympy-common The following NEW packages will be installed: blt ca-certificates fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libncursesw6 libnsl2 libopenjp2-7 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 libreadline8 libsharpyuv0 libsqlite3-0 libtcl8.6 libtiff6 libtirpc-common libtirpc3 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 media-types multiqc netbase openssl python-matplotlib-data python3 python3-appdirs python3-attr python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-coloredlogs python3-colormath python3-contourpy python3-cycler python3-dateutil python3-decorator python3-distutils python3-fonttools python3-fs python3-humanfriendly python3-humanize python3-idna python3-importlib-metadata python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-pyaml-env python3-pygments python3-pyparsing python3-requests python3-rich python3-rich-click python3-scipy python3-simplejson python3-six python3-spectra python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zipp python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common tk8.6-blt2.5 unicode-data x11-common 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 104 MB of archives. After this operation, 452 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-1 [817 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-1 [2037 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:11 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-1 [1825 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-1 [597 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:22 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-1 [807 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.2-1 [2186 kB] Get:25 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:26 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2+b1 [1033 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.42-1 [277 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b1 [439 kB] Get:31 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:32 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:33 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.14.2-6+b1 [316 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.14.2-6+b1 [388 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:44 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.13-2+b1 [783 kB] Get:47 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:48 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:49 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:50 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.0~RC3-1 [189 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.3-2 [1452 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2 [2213 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get:66 http://deb.debian.org/debian sid/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:68 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:69 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:70 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:71 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b2 [190 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-1 [1929 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6 [244 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1 [13.7 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.3 [107 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.3 [308 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.3 [107 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.3 [120 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:87 http://deb.debian.org/debian sid/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.6-1 [93.8 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-3 [85.2 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-humanize all 4.9.0-1 [52.0 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-markdown all 3.5.2-1 [82.0 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.2.0-1 [525 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.11.5-1 [108 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.2.0-1 [77.7 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.2-1 [653 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-1+b2 [287 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:107 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:108 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:109 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.10.1-10 [19.7 MB] Get:110 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-1 [65.5 kB] Get:111 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:112 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-1 [30.8 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:116 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-3 [95.3 kB] Get:117 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get:118 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:119 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:120 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:121 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.4-1+b2 [80.3 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:124 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-1+b2 [8166 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:127 http://deb.debian.org/debian sid/main amd64 python3-pyaml-env all 1.2.1-1 [8952 B] Get:128 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:129 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:130 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:131 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:132 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:133 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:134 http://deb.debian.org/debian sid/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get:135 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get:136 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get:137 http://deb.debian.org/debian sid/main amd64 python3-rich all 13.3.1-2 [198 kB] Get:138 http://deb.debian.org/debian sid/main amd64 python3-rich-click all 1.6.0-1 [20.8 kB] Get:139 http://deb.debian.org/debian sid/main amd64 python3-colormath all 3.0.0-4 [34.7 kB] Get:140 http://deb.debian.org/debian sid/main amd64 python3-spectra all 0.0.11-4 [16.5 kB] Get:141 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:142 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:143 http://deb.debian.org/debian sid/main amd64 python3-lzstring all 1.0.4-3 [5544 B] Get:144 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get:145 http://deb.debian.org/debian sid/main amd64 multiqc all 1.18+dfsg-1 [713 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 104 MB in 2s (59.2 MB/s) Selecting previously unselected package libpython3.11-minimal:amd64. 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Setting up libsharpyuv0:amd64 (1.3.2-0.3) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.78.3-2) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libtirpc-common (1.3.4+ds-1) ... Setting up fonts-lyx (2.4.0~RC3-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.1-1) ... Setting up libpython3.12-minimal:amd64 (3.12.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.19-1) ... Setting up libqhull-r8.0:amd64 (2020.2-6) ... Setting up libgomp1:amd64 (14-20240201-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up unicode-data (15.1.0-1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libimagequant0:amd64 (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:amd64 (1.6.42-1) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libgfortran5:amd64 (14-20240201-3) ... Setting up libwebp7:amd64 (1.3.2-0.3) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.1.5-1) ... Setting up libwebpmux3:amd64 (1.3.2-0.3) ... Setting up libbsd0:amd64 (0.11.8-1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.2-6+b1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.3) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2) ... Setting up libfontconfig1:amd64 (2.14.2-6+b1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libraqm0:amd64 (0.10.1-1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.2-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-1) ... Setting up libtk8.6:amd64 (8.6.13-2+b1) ... Setting up python3.12 (3.12.2-1) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3 (3.11.6-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-tz (2024.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-pil:amd64 (10.2.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-humanfriendly (10.0-3) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b2) ... Setting up python3-idna (3.6-2) ... Setting up python3-markdown (3.5.2-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-lxml:amd64 (5.1.0-1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lzstring (1.0.4-3) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:amd64 (3.11.5-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-click (8.1.6-1) ... Setting up python3-networkx (2.8.8-1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' "graph [edge [ source u'u\4200' target u'u\4200' ] " /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' + "node [ id u'u\4200' label b ] ]" Setting up python3-fs (2.4.16-3) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-pyaml-env (1.2.1-1) ... /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' type_tag_pattern = re.compile(f'({type_tag}\w+\s)') Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.2.0-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-colormath (3.0.0-4) ... /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying adaptation matrix: %s", adaptation) /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:684: SyntaxWarning: invalid escape sequence '\s' """ /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:788: SyntaxWarning: invalid escape sequence '\s' """ /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying RGB conversion matrix: %s->%s", /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Target RGB space: %s", target_rgb) /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Target native illuminant: %s", target_illum) /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying transformation from %s to %s ", /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* New values: %.3f, %.3f, %.3f", /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Original illuminant: %s", self.illuminant) /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Target illuminant: %s", target_illuminant) /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying transformation from %s to %s ", Setting up python3-contourpy (1.0.7-1+b2) ... Setting up python3-humanize (4.9.0-1) ... Setting up python3-scipy (1.10.1-10) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-spectra (0.0.11-4) ... Setting up python3-rich (13.3.1-2) ... Setting up python3-rich-click (1.6.0-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b2) ... Setting up multiqc (1.18+dfsg-1) ... /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:606: SyntaxWarning: invalid escape sequence '\s' new_phenotype = re.sub("(\s|-|\.|_)+", "_", phenotype) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:735: SyntaxWarning: invalid escape sequence '\d' RGX_QC_PHENOTYPE = re.compile("^qc-coverage-region-(?P\d+)$", re.IGNORECASE) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:779: SyntaxWarning: invalid escape sequence '\s' m_id = re.sub("(\s|-|\.|_)+", " ", phenotype + "_" + metric) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:816: SyntaxWarning: invalid escape sequence '\s' phenotype = re.sub("(\s|-|\.|_)+", " ", phenotype).strip() /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:855: SyntaxWarning: invalid escape sequence '\s' m_id = re.sub("(\s|-|\.|_)+", " ", phenotype + "_" + metric) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:907: SyntaxWarning: invalid escape sequence '\s' "anchor": "dragen-cov-metrics-own-section-" + re.sub("(\s|-|\.|_)+", "-", phenotype), /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:983: SyntaxWarning: invalid escape sequence '\s' metric = re.sub("\s+", " ", metric).strip() /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1005: SyntaxWarning: invalid escape sequence '\.' FILE_RGX = re.compile("(.+)\.(.+)_coverage_metrics(.*)\.csv$") /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1068: SyntaxWarning: invalid escape sequence '\s' if not re.search("^\s*$", line): /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1253: SyntaxWarning: invalid escape sequence '\[' metric = re.sub("\[\d+x:", "[ix:", metric) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1254: SyntaxWarning: invalid escape sequence '\d' metric = re.sub(":\d+x\)", ":jx)", metric) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1256: SyntaxWarning: invalid escape sequence '\d' metric = re.sub("\d+", "d", metric) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1268: SyntaxWarning: invalid escape sequence '\[' ix_jx_match = re.search("\[(\d+x):(inf|\d+x)\)", pct_case["entity"]) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1279: SyntaxWarning: invalid escape sequence '\(' float_match = re.search("\(pct > (\d+\.\d+)\*mean\)", uni_case["entity"]) /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1558: SyntaxWarning: invalid escape sequence '\(' RGX_FLOAT = re.compile("\(pct\s*>\s*(\d+\.\d+)\*mean\)") /usr/lib/python3/dist-packages/multiqc/modules/dragen/coverage_metrics.py:1606: SyntaxWarning: invalid escape sequence '\[' IX_JX = re.compile("\[(\d+)x:(inf|\d+x)\)") /usr/lib/python3/dist-packages/multiqc/modules/rockhopper/rockhopper.py:119: SyntaxWarning: invalid escape sequence '\s' results["total-reads"] = int(re.search("Total reads:\s*(\d*)", line).group(1)) /usr/lib/python3/dist-packages/multiqc/modules/rockhopper/rockhopper.py:124: SyntaxWarning: invalid escape sequence '\s' genome_reads = int(re.search("Successfully aligned reads:\s*(\d*)", line).group(1)) /usr/lib/python3/dist-packages/multiqc/modules/rockhopper/rockhopper.py:127: SyntaxWarning: invalid escape sequence '\d' stats = [int(re.search("(\d+)\%", subline).group(1)) for subline in lines[i + 1 : i + 10]] /usr/lib/python3/dist-packages/multiqc/modules/sambamba/markdup.py:75: SyntaxWarning: invalid escape sequence '\d' "sorted_end_pairs": "sorted (\d+) end pairs", /usr/lib/python3/dist-packages/multiqc/modules/sambamba/markdup.py:76: SyntaxWarning: invalid escape sequence '\d' "single_ends": "and (\d+) single ends", /usr/lib/python3/dist-packages/multiqc/modules/sambamba/markdup.py:77: SyntaxWarning: invalid escape sequence '\d' "single_unmatched_pairs": "among them (\d+) unmatched", /usr/lib/python3/dist-packages/multiqc/modules/sambamba/markdup.py:78: SyntaxWarning: invalid escape sequence '\d' "duplicate_reads": "found (\d+) duplicates", /usr/lib/python3/dist-packages/multiqc/modules/samblaster/samblaster.py:85: SyntaxWarning: invalid escape sequence '\S' input_file_regex = "samblaster: Opening (\S+) for read." /usr/lib/python3/dist-packages/multiqc/modules/samblaster/samblaster.py:86: SyntaxWarning: invalid escape sequence '\S' rgtag_name_regex = "\\\\tID:(\S*?)\\\\t" /usr/lib/python3/dist-packages/multiqc/modules/samtools/rmdup.py:20: SyntaxWarning: invalid escape sequence '\[' dups_regex = "\[bam_rmdups?e?_core\] (\d+) / (\d+) = (\d+\.\d+) in library '(.*)'" /usr/lib/python3/dist-packages/multiqc/modules/seqyclean/seqyclean.py:162: SyntaxWarning: invalid escape sequence '\g' nice_name = re.sub("([a-z])([A-Z])", "\g<1> \g<2>", k) # CamelCase > Camel Case /usr/lib/python3/dist-packages/multiqc/modules/seqyclean/seqyclean.py:163: SyntaxWarning: invalid escape sequence '\d' nice_name = re.sub("([PS]E\d?)", "\g<1> ", nice_name) # PE1Label > PE1 Label /usr/lib/python3/dist-packages/multiqc/modules/seqyclean/seqyclean.py:163: SyntaxWarning: invalid escape sequence '\g' nice_name = re.sub("([PS]E\d?)", "\g<1> ", nice_name) # PE1Label > PE1 Label /usr/lib/python3/dist-packages/multiqc/modules/seqyclean/seqyclean.py:164: SyntaxWarning: invalid escape sequence '\g' nice_name = re.sub("W([A-Z])", "W \g<1>", nice_name) # WContam > W Contam /usr/lib/python3/dist-packages/multiqc/modules/sickle/sickle.py:53: SyntaxWarning: invalid escape sequence '\d' ["reads_paired_kept", re.compile("FastQ paired records kept: ([\d,]+) .*")], /usr/lib/python3/dist-packages/multiqc/modules/sickle/sickle.py:54: SyntaxWarning: invalid escape sequence '\d' ["reads_single_kept", re.compile("FastQ single records kept: ([\d,]+).*")], /usr/lib/python3/dist-packages/multiqc/modules/sickle/sickle.py:55: SyntaxWarning: invalid escape sequence '\d' ["reads_paired_discarded", re.compile("FastQ paired records discarded: ([\d,]+) .*")], /usr/lib/python3/dist-packages/multiqc/modules/sickle/sickle.py:56: SyntaxWarning: invalid escape sequence '\d' ["reads_single_discarded", re.compile("FastQ single records discarded: ([\d,]+) .*")], /usr/lib/python3/dist-packages/multiqc/modules/sickle/sickle.py:58: SyntaxWarning: invalid escape sequence '\d' ["reads_single_kept", re.compile("FastQ records kept: ([\d,]+)")], /usr/lib/python3/dist-packages/multiqc/modules/sickle/sickle.py:59: SyntaxWarning: invalid escape sequence '\d' ["reads_single_discarded", re.compile("FastQ records discarded: ([\d,]+)")], /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:92: SyntaxWarning: invalid escape sequence '\s' "fq1": "Input file:\s+(.+)", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:93: SyntaxWarning: invalid escape sequence '\s' "fq2": "Paired file:\s+(.+)", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:94: SyntaxWarning: invalid escape sequence '\d' "r_processed": "(\d+) read|reads pairs? processed", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:95: SyntaxWarning: invalid escape sequence '\d' "r_short_filtered": "(\d+) \(\s*\d+.\d+%\) short read", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:96: SyntaxWarning: invalid escape sequence '\d' "r_empty_filtered": "(\d+) \(\s*\d+.\d+%\) empty read", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:97: SyntaxWarning: invalid escape sequence '\d' "r_avail": "(\d+) \(\s*\d+.\d+%\) read", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:98: SyntaxWarning: invalid escape sequence '\d' "r_trimmed": "(\d+) \(\s*\d+.\d+%\) trimmed read", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:99: SyntaxWarning: invalid escape sequence '\d' "r_untrimmed": "(\d+) \(\s*\d+.\d+%\) untrimmed read", /usr/lib/python3/dist-packages/multiqc/modules/skewer/skewer.py:101: SyntaxWarning: invalid escape sequence '\s' regex_hist = "\s?(\d+)\s+(\d+)\s+(\d+.\d+)%" /usr/lib/python3/dist-packages/multiqc/modules/sortmerna/sortmerna.py:86: SyntaxWarning: invalid escape sequence '\d' m = re.search("\d+", line) /usr/lib/python3/dist-packages/multiqc/modules/sortmerna/sortmerna.py:92: SyntaxWarning: invalid escape sequence '\d' m = re.search("\d+", line) /usr/lib/python3/dist-packages/multiqc/modules/sortmerna/sortmerna.py:101: SyntaxWarning: invalid escape sequence '\d' m = re.search("\d+", line) /usr/lib/python3/dist-packages/multiqc/modules/supernova/supernova.py:473: SyntaxWarning: invalid escape sequence '\[' sid_pat = re.compile("- \[(.+)\]") /usr/lib/python3/dist-packages/multiqc/modules/supernova/supernova.py:475: SyntaxWarning: invalid escape sequence '\s' stat_pat = re.compile("-\s+(\d+\.\d+)\s+(\S+|.)\s+= (.+) =") Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', '-y', 'install', 'multiqc=1.18+dfsg-1'] 1m28.7s INFO: Running scripts post_install 1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_install_exceptions'] 1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_install_exceptions'] 1m28.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 1m31.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 1m34.4s ERROR: WARN: Broken symlinks: /usr/share/doc/python3.12/changelog.gz -> NEWS.gz (python3.12) /usr/share/doc/libxml2/NEWS.gz -> changelog.gz (libxml2:amd64) /usr/share/doc/fonts-lyx/NEWS.gz -> changelog.gz (fonts-lyx) /usr/share/doc/python3.11/python-policy.txt.gz -> ../python3/python-policy.txt.gz (python3) /usr/share/doc/python3.11/changelog.gz -> NEWS.gz (python3.11) 1m34.5s INFO: /bin converted to /usr/bin by /usr merge 1m34.5s INFO: /lib converted to /usr/lib by /usr merge 1m34.5s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m34.5s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m34.5s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m34.5s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m34.5s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m34.5s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m34.5s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m34.5s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m34.5s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m34.5s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m34.5s INFO: /sbin converted to /usr/sbin by /usr merge 1m35.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp546e2npy', '-ac', '--ignore-obsolete'] 1m38.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp546e2npy', '-ac', '--ignore-obsolete'] 1m38.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m38.1s DUMP: 0.15.6 1m38.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m38.1s INFO: Running adequate version 0.15.6 now. 1m38.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'multiqc'] 1m38.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'multiqc'] 1m38.3s INFO: Running scripts pre_remove 1m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_exceptions'] 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/pre_remove_exceptions'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m41.5s DUMP: install ok installed apt apt 2.7.10 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.85 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.14.2-6+b1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-lyx fonts-lyx 2.4.0~RC3-1 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.8-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.2-6+b1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b1 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgfortran5:amd64 libgfortran5 14-20240201-3 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-metadata libjs-jquery-metadata 12-4 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 1:2.31.3+dfsg1-3 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpng16-16:amd64 libpng16-16 1.6.42-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6 install ok installed libraqm0:amd64 libraqm0 0.10.1-1 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.3 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2+b1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2+b1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.3 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.3 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.3 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6 install ok installed multiqc multiqc 1.18+dfsg-1 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.1.5-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python3 python3 3.11.6-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 23.2.0-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-click python3-click 8.1.6-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-1 install ok installed python3-colormath python3-colormath 3.0.0-4 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b2 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-fs python3-fs 2.4.16-3 install ok installed python3-humanfriendly python3-humanfriendly 10.0-3 install ok installed python3-humanize python3-humanize 4.9.0-1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-importlib-metadata python3-importlib-metadata 4.12.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b2 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-lxml:amd64 python3-lxml 5.1.0-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-lzstring python3-lzstring 1.0.4-3 install ok installed python3-markdown python3-markdown 3.5.2-1 install ok installed python3-markdown-it python3-markdown-it 3.0.0-2 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b2 install ok installed python3-mdurl python3-mdurl 0.1.2-1 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-more-itertools python3-more-itertools 10.2.0-1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pil:amd64 python3-pil 10.2.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.2.0-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pyaml-env python3-pyaml-env 1.2.1-1 install ok installed python3-pygments python3-pygments 2.17.2+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-rich python3-rich 13.3.1-2 install ok installed python3-rich-click python3-rich-click 1.6.0-1 install ok installed python3-scipy python3-scipy 1.10.1-10 install ok installed python3-simplejson python3-simplejson 3.19.2-1+b1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-spectra python3-spectra 0.0.11-4 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tk:amd64 python3-tk 3.11.5-1 install ok installed python3-tz python3-tz 2024.1-1 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3-zipp python3-zipp 1.0.0-6 install ok installed python3.11 python3.11 3.11.8-1 install ok installed python3.11-minimal python3.11-minimal 3.11.8-1 install ok installed python3.12 python3.12 3.12.2-1 install ok installed python3.12-minimal python3.12-minimal 3.12.2-1 install ok installed readline-common readline-common 8.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed tzdata tzdata 2024a-1 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed x11-common x11-common 1:7.7+23 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 1m41.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m41.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'remove', 'blt', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-importlib-metadata', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyaml-env', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-rich', 'python3-rich-click', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-spectra', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'multiqc'] 1m52.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blt ca-certificates fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libncursesw6 libnsl2 libopenjp2-7 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 libreadline8 libsharpyuv0 libsqlite3-0 libtcl8.6 libtiff6 libtirpc-common libtirpc3 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 media-types multiqc netbase openssl python-matplotlib-data python3 python3-appdirs python3-attr python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-coloredlogs python3-colormath python3-contourpy python3-cycler python3-dateutil python3-decorator python3-distutils python3-fonttools python3-fs python3-humanfriendly python3-humanize python3-idna python3-importlib-metadata python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-pyaml-env python3-pygments python3-pyparsing python3-requests python3-rich python3-rich-click python3-scipy python3-simplejson python3-six python3-spectra python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zipp python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common tk8.6-blt2.5 unicode-data x11-common 0 upgraded, 0 newly installed, 145 to remove and 0 not upgraded. After this operation, 452 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18191 files and directories currently installed.) Removing multiqc (1.18+dfsg-1) ... Removing python3-matplotlib (3.6.3-1+b2) ... Removing python3-pil.imagetk:amd64 (10.2.0-1) ... Removing python3-pil:amd64 (10.2.0-1) ... Removing python3-tk:amd64 (3.11.5-1) ... Removing blt (2.5.3+dfsg-7) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing libtk8.6:amd64 (8.6.13-2+b1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing libfontconfig1:amd64 (2.14.2-6+b1) ... Removing fontconfig-config (2.14.2-6+b1) ... Removing python-matplotlib-data (3.6.3-1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing fonts-lyx (2.4.0~RC3-1) ... Removing python3-spectra (0.0.11-4) ... Removing python3-colormath (3.0.0-4) ... Removing python3-contourpy (1.0.7-1+b2) ... Removing libraqm0:amd64 (0.10.1-1) ... Removing libharfbuzz0b:amd64 (8.3.0-2) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.19-1) ... Removing python3-simplejson (3.19.2-1+b1) ... Removing python3-distutils (3.11.5-1) ... Removing python3-rich-click (1.6.0-1) ... Removing python3-rich (13.3.1-2) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libglib2.0-0:amd64 (2.78.3-2) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Removing libjs-jquery-metadata (12-4) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b2) ... Removing libpng16-16:amd64 (1.6.42-1) ... Removing libqhull-r8.0:amd64 (2020.2-6) ... Removing libwebpmux3:amd64 (1.3.2-0.3) ... Removing libwebpdemux2:amd64 (1.3.2-0.3) ... Removing libwebp7:amd64 (1.3.2-0.3) ... Removing libsharpyuv0:amd64 (1.3.2-0.3) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing python3-pyaml-env (1.2.1-1) ... Removing python3-yaml (6.0.1-2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing openssl (3.1.5-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-click (8.1.6-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-coloredlogs (15.0.1-1) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-humanfriendly (10.0-3) ... Removing python3-humanize (4.9.0-1) ... Removing python3-idna (3.6-2) ... Removing python3-markdown (3.5.2-1) ... Removing python3-importlib-metadata (4.12.0-1) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-kiwisolver (1.4.4-1+b2) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-lzstring (1.0.4-3) ... Removing python3-markdown-it (3.0.0-2) ... Removing python3-markupsafe (2.1.5-1) ... Removing python3-mdurl (0.1.2-1) ... Removing python3-zipp (1.0.0-6) ... Removing python3-more-itertools (10.2.0-1) ... Removing python3-networkx (2.8.8-1) ... Removing python3-packaging (23.2-1) ... Removing python3-pygments (2.17.2+dfsg-1) ... Removing python3-pyparsing (3.1.1-1) ... Removing python3-urllib3 (1.26.18-2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.8-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing python3-attr (23.2.0-1) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.10.1-10) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing python3.12 (3.12.2-1) ... Removing python3.12-minimal (3.12.2-1) ... Removing libgfortran5:amd64 (14-20240201-3) ... Removing libpython3.12-stdlib:amd64 (3.12.2-1) ... Removing python3-lxml:amd64 (5.1.0-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libpython3.12-minimal:amd64 (3.12.2-1) ... Removing python3-fs (2.4.16-3) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-sympy (1.12-7) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2024.1-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing unicode-data (15.1.0-1) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libnsl2:amd64 (1.3.0-3) ... Removing python3-minimal (3.11.6-1) ... Removing libreadline8:amd64 (8.2-3) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Removing python3.11-minimal (3.11.8-1) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libtirpc3:amd64 (1.3.4+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Removing libkrb5-3:amd64 (1.20.1-5+b1) ... Removing libk5crypto3:amd64 (1.20.1-5+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-5+b1) ... Removing libpython3.11-minimal:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libtirpc-common (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-15) ... 1m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'remove', 'blt', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-importlib-metadata', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyaml-env', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-rich', 'python3-rich-click', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-spectra', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'multiqc'] 1m52.7s INFO: Running scripts post_remove 1m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_remove_exceptions'] 1m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_remove_exceptions'] 1m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--purge', 'blt', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-importlib-metadata', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyaml-env', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-rich', 'python3-rich-click', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-spectra', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common'] 1m53.0s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed (Reading database ... 5275 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig-config (2.14.2-6+b1) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.3-2) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-metadata which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-tablesorter which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.1.5-1) ... Purging configuration files for python-matplotlib-data (3.6.3-1) ... Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-coloredlogs which isn't installed dpkg: warning: ignoring request to remove python3-colormath which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-humanfriendly which isn't installed dpkg: warning: ignoring request to remove python3-humanize which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-lzstring which isn't installed dpkg: warning: ignoring request to remove python3-markdown which isn't installed dpkg: warning: ignoring request to remove python3-markdown-it which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-mdurl which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pyaml-env which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rich which isn't installed dpkg: warning: ignoring request to remove python3-rich-click which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-spectra which isn't installed Purging configuration files for python3-sympy (1.12-7) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.2-1) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for x11-common (1:7.7+23) ... 1m53.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--purge', 'blt', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-metadata', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-fonttools', 'python3-fs', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-importlib-metadata', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyaml-env', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-rich', 'python3-rich-click', 'python3-scipy', 'python3-simplejson', 'python3-six', 'python3-spectra', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common'] 1m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--purge', 'multiqc'] 1m53.0s DUMP: dpkg: warning: ignoring request to remove multiqc which isn't installed 1m53.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--purge', 'multiqc'] 1m53.0s INFO: Running scripts post_purge 1m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_purge_exceptions'] 1m53.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_purge_exceptions'] 1m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--purge', '--pending'] 1m53.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--purge', '--pending'] 1m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--remove', '--pending'] 1m53.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg', '--remove', '--pending'] 1m53.0s INFO: Running scripts post_test 1m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_test_exceptions'] 1m53.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'tmp/scripts/post_test_exceptions'] 1m53.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 1m53.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 1m54.2s DEBUG: No broken symlinks as far as we can find. 1m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-divert', '--list'] 1m54.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 1m54.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'dpkg-divert', '--list'] 1m54.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'clean'] 1m54.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp546e2npy', 'apt-get', 'clean'] 1m54.3s DEBUG: Recording chroot state 1m55.1s INFO: PASS: Installation and purging test. 1m55.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/shm'] 1m55.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/shm'] 1m55.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/console'] 1m55.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/console'] 1m55.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/ptmx'] 1m55.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/ptmx'] 1m55.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/pts'] 1m55.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/dev/pts'] 1m55.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/proc'] 1m55.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp546e2npy/proc'] 1m55.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 1m55.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp546e2npy'] 1m55.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp546e2npy 1m55.8s INFO: PASS: All tests. 1m55.8s INFO: piuparts run ends. ret=0 End: 2024-02-12 21:52:08 GMT