Start: 2024-12-25 04:19:46 GMT Package: pigx-rnaseq Version: 0.1.1-1 Installed-Size: 176 Maintainer: Debian Med Packaging Team Architecture: all Depends: fastp, fastqc, hisat2 | rna-star, libjs-jquery-datatables, libjs-jquery-tablesorter, megadepth, multiqc, python3:any, python3-deeptools, python3-htseq, r-bioc-deseq2, r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot, r-cran-crosstalk, r-cran-data.table, r-cran-dt, r-cran-ggplot2, r-cran-ggpubr, r-cran-ggrepel, r-cran-gprofiler2, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2, r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools, snakemake, trim-galore Recommends: hisat2, rna-star Description: pipeline for checkpointed and distributed RNA-seq analyses Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c Section: science Priority: optional Filename: pool/main/p/pigx-rnaseq/pigx-rnaseq_0.1.1-1_all.deb Size: 61696 MD5sum: 31284ff2cec66262fab4b45074a1c1ad SHA256: 286ce30816f15c9348617ee7aa74d60a29c39d94b0942b330eee7df942b6192a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pigx-rnaseq=0.1.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pigx-rnaseq=0.1.1-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzj44xa4m 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzj44xa4m 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzj44xa4m/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmpzj44xa4m/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'update'] 0m2.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7363 kB] Fetched 17.7 MB in 1s (12.4 MB/s) Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 7affb5b94df815c7b84920e71c2ba0f8 - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m2.6s DUMP: dpkg-query: no packages found matching systemd-sysv dpkg-query: no packages found matching sysv-rc 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_forbid_home'] 0m3.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_forbid_home'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'clean'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'clean'] 0m3.1s DEBUG: Recording chroot state 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.3s DUMP: install ok installed apt apt 2.9.19 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.2-12 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.88 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-11 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.2 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.19 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-12 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2~rc1-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.275 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2~rc1-2 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-11 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-12 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-12 install ok installed libss2:amd64 libss2 1.47.2~rc1-2 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-11 install ok installed libsystemd0:amd64 libsystemd0 257.1-4 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257.1-4 install ok installed libuuid1:amd64 libuuid1 2.40.2-12 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-12 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-12 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl-base perl-base 5.40.0-8 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-4 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2024b-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-12 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-divert', '--list'] 0m3.3s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-divert', '--list'] 0m3.3s INFO: Running scripts is_testable 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/is_testable_uninstallable'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/is_testable_uninstallable'] 0m3.3s INFO: apt-cache does not know about any of the requested packages 0m3.3s INFO: Running scripts pre_test 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_test_exceptions'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_test_exceptions'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_test_root_password'] 0m3.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_test_root_password'] 0m3.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 0m3.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 0m3.8s DEBUG: No broken symlinks as far as we can find. 0m3.8s INFO: Running scripts pre_install 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_database-server'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_extras'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 0m4.2s DEBUG: No broken symlinks as far as we can find. 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-cache', 'policy'] 0m4.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-cache', 'policy'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m4.6s DUMP: pigx-rnaseq: Installed: (none) Candidate: 0.1.1-1 Version table: 0.1.1-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.1.1-1'] 1m15.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adduser adwaita-icon-theme at-spi2-common blt ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cutadapt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless docutils-common fastp fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx fonts-mathjax git git-man gtk-update-icon-cache hicolor-icon-theme hisat2 java-common javascript-common libapache-pom-java libapparmor1 libasan8 libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libbigwig0t64 libblas3 libboost-dev libboost-filesystem1.83.0 libboost-iostreams1.83.0 libboost-program-options1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcloudproviders0 libcolord2 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcrypt-dev libcups2t64 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libelf1t64 libepoxy0 liberror-perl libexpat1 libffi8 libfindbin-libs-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhts3t64 libhtscodecs2 libhtsjdk-java libhwasan0 libhwloc15 libice6 libicu72 libidn2-0 libimagequant0 libisal2 libitm1 libjbig0 libjbzip2-java libjemalloc2 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm19 liblsan0 liblua5.4-0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmjson-java libncbi-ngs3 libncbi-vdb3 libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-gnutls8 libnlopt0 libnsl2 libnspr4 libnss3 libnuma1 libopenjp2-7 libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcsclite1 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv0 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libstaden-read14t64 libstdc++-14-dev libsystemd-shared libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxxf86vm1 libyaml-0-2 libz3-4 linux-libc-dev littler media-types megadepth mesa-libgallium multiqc ncbi-vdb-data netbase node-bootstrap-sass node-html5shiv node-normalize.css openjdk-21-jre openjdk-21-jre-headless openssl pandoc pandoc-data perl perl-modules-5.40 pigz procps python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-autocommand python3-babel python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-coloredlogs python3-colormath python3-configargparse python3-connection-pool python3-contourpy python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-defusedxml python3-dnaio python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-fs python3-git python3-gitdb python3-htseq python3-humanfriendly python3-humanize python3-idna python3-imagesize python3-importlib-metadata python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-networkx python3-numpy python3-numpydoc python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-plac python3-platformdirs python3-plotly python3-psutil python3-pulp python3-py python3-py2bit python3-pyaml-env python3-pybigwig python3-pygments python3-pyparsing python3-pysam python3-ratelimiter python3-referencing python3-requests python3-retry python3-rich python3-rich-click python3-roman python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-stopit python3-sympy python3-tabulate python3-tenacity python3-throttler python3-tk python3-toposort python3-traitlets python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-yte python3-zipp python3.12 python3.12-minimal python3.12-tk python3.13-tk r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-tximport r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-boot r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata r-cran-caret r-cran-cellranger r-cran-class r-cran-cli r-cran-clipr r-cran-clock r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deriv r-cran-diagram r-cran-digest r-cran-doby r-cran-dplyr r-cran-dt r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-forcats r-cran-foreach r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-ggpubr r-cran-ggrepel r-cran-ggsci r-cran-ggsignif r-cran-globals r-cran-glue r-cran-gower r-cran-gprofiler2 r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-haven r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4 r-cran-locfit r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime r-cran-miniui r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-openxlsx r-cran-parallelly r-cran-pbkrtest r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-polynom r-cran-prettyunits r-cran-proc r-cran-prodlim r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-recipes r-cran-rematch r-cran-reshape2 r-cran-restfulr r-cran-rio r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rstatix r-cran-sass r-cran-scales r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-sparsem r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-withr r-cran-writexl r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zip readline-common rpcsvc-proto salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common systemd systemd-sysv tk8.6-blt2.5 trim-galore ucf unicode-data unzip x11-common xdg-utils xkb-data xml-core zip zlib1g-dev Suggested packages: liblocale-gettext-perl cron quota adwaita-icon-theme-legacy blt-demo gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn apache2 | lighttpd | httpd alsa-utils libasound2-plugins libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev colord libasm-java libxz-java libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java cups-common rng-tools gdbm-l10n low-memory-monitor gnutls-bin krb5-doc krb5-user gvfs picard-tools libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils libngs-java-doc libcryptsetup12 libtss2-rc0t64 pciutils pcscd rhino lm-sensors libstdc++-14-doc libarchive13t64 libbpf1 libdw1t64 libfido2-1 libip4tc2 libpwquality1 libqrencode4 tcl8.6 tk8.6 r-bioc-megadepth nodejs libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex citation-style-language-styles perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-venv python-attr-doc python-charset-normalizer-doc python-cycler-doc python-python-deeptoolsintervals-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python-jupyter-core-doc python3-pip python-lxml-doc python-markdown-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils python-mpmath-doc python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc python3-setuptools python3-pandas python3-ipykernel subversion python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-azure python3-azure-storage python3-stemmer dvisvgm fonts-freefont-otf imagemagick latexmk python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic python-sympy-doc python-tenacity-doc tix python3-tk-dbg python-traitlets-doc python3.12-venv python3.12-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-all r-cran-runit r-bioc-golubesets r-bioc-biocstyle r-bioc-limma r-bioc-annotationdbi r-bioc-affy r-bioc-annotate r-cran-testthat r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-bioc-shortread r-cran-batchtools r-bioc-pwalign r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-tximeta r-bioc-tximportdata r-cran-pbapply r-bioc-glmgampoi r-cran-biocmanager r-bioc-edger r-bioc-txdbmaker r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-bioc-sparsematrixstats r-bioc-org.hs.eg.db r-bioc-graph r-bioc-rhdf5 r-cran-dbi r-cran-rmariadb r-cran-roxygen2 r-cran-ff r-cran-bradleyterry2 r-cran-covr r-cran-ellipse r-cran-gam r-cran-mlbench r-cran-party r-cran-pls r-cran-randomforest r-cran-rann r-cran-rstudioapi r-cran-ragg r-cran-vdiffr r-cran-tinytest r-cran-magick r-cran-sf r-cran-getopt r-cran-interp r-cran-multcomp r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-bench r-cran-blob r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo readline-doc cwltool sgml-base-doc slurm-client snakemake-doc systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved systemd-repart libtss2-tcti-device0 polkitd debhelper Recommended packages: librsvg2-common patch less ssh-client python3-hisat2 bcftools alsa-ucm-conf alsa-topology-conf at-spi2-core curl manpages manpages-dev libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgpg-error-l10n libgtk-3-bin libhwloc-plugins node-jquery libjson-xs-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libkmod2 mesa-vulkan-drivers | vulkan-icd node-clipboard libjs-filesaver texlive-xetex libatk-wrapper-java-jni fonts-dejavu-extra rna-star psmisc linux-sysctl-defaults python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-olefile g++ | c++-compiler python3-pooch python3-boto3 python3-paramiko python3-zstandard make isympy-common r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-aer r-cran-bbmle r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-covr r-cran-emmeans r-cran-epir r-cran-gam r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm r-cran-hmisc r-cran-irlba r-cran-interp r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lmtest r-cran-lsmeans r-cran-maps r-cran-mclust r-cran-metafor r-cran-modeldata r-cran-multcomp r-cran-network r-cran-ordinal r-cran-plm r-cran-psych r-cran-robust r-cran-robustbase r-cran-rsample r-cran-sandwich r-cran-spdep r-cran-spatialreg r-cran-spelling r-cran-survey r-cran-systemfit r-cran-tseries r-cran-zoo r-cran-thematic r-cran-earth r-cran-mda r-cran-mlmetrics r-cran-fastica r-cran-kernlab r-cran-themis r-cran-callr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-slider r-cran-mvtnorm r-cran-vcd r-cran-png r-cran-jpeg r-cran-viridis r-cran-xml2 r-cran-seriation r-cran-cairo r-cran-gridgraphics r-cran-magick r-cran-patchwork r-cran-ragg r-cran-vdiffr r-cran-venndiagram r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-webutils r-cran-xts r-cran-markdown r-cran-dbi r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-testit w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-rhpcblasctl r-cran-r.rsp r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-profvis r-cran-sf r-cran-svglite r-cran-devtools r-cran-ggbeeswarm r-cran-waldo r-cran-roxygen2 r-cran-usethis r-cran-mlbench r-cran-th.data r-cran-randomforest r-cran-party r-cran-gridsvg r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-ellipse r-cran-fields r-bioc-graph r-cran-bookdown r-cran-igraph r-cran-lavasearch2 r-cran-mets r-cran-optimx r-cran-polycor r-cran-lintr r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-ggthemes r-cran-ggally r-cran-ggalluvial r-cran-dendextend r-cran-irdisplay r-cran-palmerpenguins r-cran-rversions r-cran-doparallel r-cran-itertools r-cran-logcondens r-cran-pbmcapply r-cran-furrr r-cran-cba r-cran-ddalpha r-cran-dials r-cran-rann r-cran-rcpproll r-cran-rspectra r-cran-splines2 r-cran-rcppml r-cran-dimred r-cran-runit r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-coin r-cran-dichromat r-cran-setrng r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv cwltool imagemagick python3-yappi python3-azure-storage python3-biopython python3-botocore python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes systemd-timesyncd | time-daemon systemd-cryptsetup libnss-systemd libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adduser adwaita-icon-theme at-spi2-common blt ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cutadapt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless docutils-common fastp fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx fonts-mathjax git git-man gtk-update-icon-cache hicolor-icon-theme hisat2 java-common javascript-common libapache-pom-java libapparmor1 libasan8 libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libbigwig0t64 libblas3 libboost-dev libboost-filesystem1.83.0 libboost-iostreams1.83.0 libboost-program-options1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcloudproviders0 libcolord2 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcrypt-dev libcups2t64 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libelf1t64 libepoxy0 liberror-perl libexpat1 libffi8 libfindbin-libs-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhts3t64 libhtscodecs2 libhtsjdk-java libhwasan0 libhwloc15 libice6 libicu72 libidn2-0 libimagequant0 libisal2 libitm1 libjbig0 libjbzip2-java libjemalloc2 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm19 liblsan0 liblua5.4-0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmjson-java libncbi-ngs3 libncbi-vdb3 libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-gnutls8 libnlopt0 libnsl2 libnspr4 libnss3 libnuma1 libopenjp2-7 libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcsclite1 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librhino-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv0 libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libstaden-read14t64 libstdc++-14-dev libsystemd-shared libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxxf86vm1 libyaml-0-2 libz3-4 linux-libc-dev littler media-types megadepth mesa-libgallium multiqc ncbi-vdb-data netbase node-bootstrap-sass node-html5shiv node-normalize.css openjdk-21-jre openjdk-21-jre-headless openssl pandoc pandoc-data perl perl-modules-5.40 pigx-rnaseq pigz procps python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-autocommand python3-babel python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-coloredlogs python3-colormath python3-configargparse python3-connection-pool python3-contourpy python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-defusedxml python3-dnaio python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-fs python3-git python3-gitdb python3-htseq python3-humanfriendly python3-humanize python3-idna python3-imagesize python3-importlib-metadata python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-networkx python3-numpy python3-numpydoc python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-plac python3-platformdirs python3-plotly python3-psutil python3-pulp python3-py python3-py2bit python3-pyaml-env python3-pybigwig python3-pygments python3-pyparsing python3-pysam python3-ratelimiter python3-referencing python3-requests python3-retry python3-rich python3-rich-click python3-roman python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-stopit python3-sympy python3-tabulate python3-tenacity python3-throttler python3-tk python3-toposort python3-traitlets python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-yte python3-zipp python3.12 python3.12-minimal python3.12-tk python3.13-tk r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-tximport r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-boot r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata r-cran-caret r-cran-cellranger r-cran-class r-cran-cli r-cran-clipr r-cran-clock r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deriv r-cran-diagram r-cran-digest r-cran-doby r-cran-dplyr r-cran-dt r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-forcats r-cran-foreach r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-ggpubr r-cran-ggrepel r-cran-ggsci r-cran-ggsignif r-cran-globals r-cran-glue r-cran-gower r-cran-gprofiler2 r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-haven r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4 r-cran-locfit r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime r-cran-miniui r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-openxlsx r-cran-parallelly r-cran-pbkrtest r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-polynom r-cran-prettyunits r-cran-proc r-cran-prodlim r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-recipes r-cran-rematch r-cran-reshape2 r-cran-restfulr r-cran-rio r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rstatix r-cran-sass r-cran-scales r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-sparsem r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-withr r-cran-writexl r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zip readline-common rpcsvc-proto salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common systemd systemd-sysv tk8.6-blt2.5 trim-galore ucf unicode-data unzip x11-common xdg-utils xkb-data xml-core zip zlib1g-dev 0 upgraded, 660 newly installed, 0 to remove and 0 not upgraded. Need to get 601 MB of archives. After this operation, 2324 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapparmor1 amd64 3.1.7-1+b3 [42.1 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libsystemd-shared amd64 257.1-4 [2138 kB] Get:3 http://deb.debian.org/debian sid/main amd64 systemd amd64 257.1-4 [3611 kB] Get:4 http://deb.debian.org/debian sid/main amd64 systemd-sysv amd64 257.1-4 [60.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.16.0-1 [177 kB] Get:6 http://deb.debian.org/debian sid/main amd64 dbus-bin amd64 1.16.0-1 [78.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 dbus-session-bus-common all 1.16.0-1 [51.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:9 http://deb.debian.org/debian sid/main amd64 dbus-daemon amd64 1.16.0-1 [157 kB] Get:10 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:11 http://deb.debian.org/debian sid/main amd64 dbus-system-bus-common all 1.16.0-1 [52.2 kB] Get:12 http://deb.debian.org/debian sid/main amd64 dbus amd64 1.16.0-1 [70.5 kB] Get:13 http://deb.debian.org/debian sid/main amd64 pigz amd64 2.8-1 [62.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get:17 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:18 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:24 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:29 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get:35 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get:36 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get:39 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:40 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get:41 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpam-systemd amd64 257.1-4 [292 kB] Get:43 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB] Get:47 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.0-8 [267 kB] Get:48 http://deb.debian.org/debian sid/main amd64 ucf all 3.0046 [41.1 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-11 [9284 B] Get:51 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.82.4-1 [1501 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:54 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.44-3 [280 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:59 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-1+b1 [141 kB] Get:64 http://deb.debian.org/debian sid/main amd64 gtk-update-icon-cache amd64 4.16.7+ds-1 [50.2 kB] Get:65 http://deb.debian.org/debian sid/main amd64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get:66 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 47.0-2 [463 kB] Get:67 http://deb.debian.org/debian sid/main amd64 at-spi2-common all 2.54.0-1 [170 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:71 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:72 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:73 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b3 [27.8 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b3 [54.6 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get:83 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get:86 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:87 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:88 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-11 [836 kB] Get:91 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get:92 http://deb.debian.org/debian sid/main amd64 coinor-libcoinutils3v5 amd64 2.11.11+ds-2 [458 kB] Get:93 http://deb.debian.org/debian sid/main amd64 coinor-libosi1v5 amd64 0.108.10+ds-1+b1 [293 kB] Get:94 http://deb.debian.org/debian sid/main amd64 coinor-libclp1 amd64 1.17.10+ds-1 [883 kB] Get:95 http://deb.debian.org/debian sid/main amd64 coinor-libcgl1 amd64 0.60.9+ds-1 [426 kB] Get:96 http://deb.debian.org/debian sid/main amd64 coinor-libcbc3.1 amd64 2.10.12+ds-1 [714 kB] Get:97 http://deb.debian.org/debian sid/main amd64 coinor-cbc amd64 2.10.12+ds-1 [16.2 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-importlib-metadata all 8.5.0-1 [21.0 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:106 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get:108 http://deb.debian.org/debian sid/main amd64 python3-xopen all 1.7.0-2 [16.9 kB] Get:109 http://deb.debian.org/debian sid/main amd64 python3-dnaio amd64 1.2.3-1 [101 kB] Get:110 http://deb.debian.org/debian sid/main amd64 python3-cutadapt amd64 4.7-2+b2 [241 kB] Get:111 http://deb.debian.org/debian sid/main amd64 cutadapt all 4.7-2 [25.1 kB] Get:112 http://deb.debian.org/debian sid/main amd64 dbus-user-session amd64 1.16.0-1 [51.0 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libdconf1 amd64 0.40.0-4+b3 [41.9 kB] Get:114 http://deb.debian.org/debian sid/main amd64 dconf-service amd64 0.40.0-4+b3 [32.6 kB] Get:115 http://deb.debian.org/debian sid/main amd64 dconf-gsettings-backend amd64 0.40.0-4+b3 [28.8 kB] Get:116 http://deb.debian.org/debian sid/main amd64 java-common all 0.76 [6776 B] Get:117 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.36-1 [110 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.106-1 [1392 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.3.1-1 [56.0 kB] Get:121 http://deb.debian.org/debian sid/main amd64 openjdk-21-jre-headless amd64 21.0.6~6ea-1 [41.8 MB] Get:122 http://deb.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get:123 http://deb.debian.org/debian sid/main amd64 libatk1.0-0t64 amd64 2.54.0-1 [51.2 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libatspi2.0-0t64 amd64 2.54.0-1 [76.4 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libatk-bridge2.0-0t64 amd64 2.54.0-1 [67.6 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libcairo-gobject2 amd64 1.18.2-2 [130 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libcloudproviders0 amd64 0.3.6-1+b1 [29.2 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libcolord2 amd64 1.4.7-1+b2 [140 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-15 [112 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-15 [44.1 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-15 [48.1 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libcups2t64 amd64 2.4.10-2+b1 [251 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libepoxy0 amd64 1.5.10-2 [193 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.1.0-1 [478 kB] Get:147 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [225 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [54.6 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [35.4 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libwayland-client0 amd64 1.23.0-1+b1 [26.6 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libwayland-cursor0 amd64 1.23.0-1+b1 [11.7 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libwayland-egl1 amd64 1.23.0-1+b1 [5664 B] Get:157 http://deb.debian.org/debian sid/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2+b3 [20.2 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.2-1+b1 [37.6 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libxdamage1 amd64 1:1.1.6-1+b2 [15.5 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3+b3 [16.0 kB] Get:162 http://deb.debian.org/debian sid/main amd64 xkb-data all 2.42-1 [790 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libxrandr2 amd64 2:1.5.4-1+b2 [36.4 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libgtk-3-common all 3.24.43-4 [4657 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libgtk-3-0t64 amd64 3.24.43-4 [2754 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:169 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 24.2.8-1 [38.0 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libxcb-dri2-0 amd64 1.17.0-2+b1 [107 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libxshmfence1 amd64 1.3-1+b2 [8848 B] Get:180 http://deb.debian.org/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libllvm19 amd64 1:19.1.6-1 [26.0 MB] Get:189 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get:191 http://deb.debian.org/debian sid/main amd64 mesa-libgallium amd64 24.2.8-1 [9185 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libgbm1 amd64 24.2.8-1 [42.8 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 24.2.8-1 [43.9 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 24.2.8-1 [154 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libasound2-data all 1.2.12-1 [21.0 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libasound2t64 amd64 1.2.12-1+b1 [371 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libgif7 amd64 5.2.2-1+b1 [44.2 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.3-1.1+b3 [25.9 kB] Get:203 http://deb.debian.org/debian sid/main amd64 openjdk-21-jre amd64 21.0.6~6ea-1 [204 kB] Get:204 http://deb.debian.org/debian sid/main amd64 default-jre amd64 2:1.21-76 [1068 B] Get:205 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:206 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libisal2 amd64 2.31.0-0.3 [114 kB] Get:208 http://deb.debian.org/debian sid/main amd64 fastp amd64 0.23.4+dfsg-1 [203 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libjbzip2-java all 0.9.1-8 [42.7 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libapache-pom-java all 33-2 [5852 B] Get:212 http://deb.debian.org/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libcommons-io-java all 2.17.0-1 [488 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get:222 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7+b1 [157 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libngs-jni amd64 3.0.9+dfsg-7+b1 [25.8 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libngs-java amd64 3.0.9+dfsg-7+b1 [112 kB] Get:227 http://deb.debian.org/debian sid/main amd64 librhino-java all 1.7.15-1 [1382 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libsnappy-jni amd64 1.1.10.7-1 [6492 B] Get:230 http://deb.debian.org/debian sid/main amd64 libsnappy-java all 1.1.10.7-1 [87.6 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libhtsjdk-java all 4.1.0+dfsg-2 [1833 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libfindbin-libs-perl all 3.0.2-1 [29.7 kB] Get:233 http://deb.debian.org/debian sid/main amd64 fastqc all 0.12.1+dfsg-4 [398 kB] Get:234 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:235 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:236 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get:237 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.19+dfsg-1 [187 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get:244 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get:245 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:246 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:247 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get:249 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:250 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.45.2-1.3 [2159 kB] Get:251 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.45.2-1.3 [8666 kB] Get:252 http://deb.debian.org/debian sid/main amd64 hisat2 amd64 2.2.1-5+b1 [3806 kB] Get:253 http://deb.debian.org/debian sid/main amd64 javascript-common all 11+nmu1 [6260 B] Get:254 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-11 [2728 kB] Get:255 http://deb.debian.org/debian sid/main amd64 libbigwig0t64 amd64 0.4.7+dfsg-3.1+b2 [28.7 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-11 [137 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-11 [26.0 kB] Get:258 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-11 [1205 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-11 [2461 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-11 [1075 kB] Get:261 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-11 [1489 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-11 [146 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-11 [2673 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.40-4 [52.0 kB] Get:265 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.6-1 [2478 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:267 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.40-4 [1954 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-11 [2373 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB] Get:271 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:272 http://deb.debian.org/debian sid/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4 [282 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4 [254 kB] Get:274 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4 [347 kB] Get:275 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get:276 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get:277 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:278 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get:279 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get:280 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB] Get:281 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:282 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:283 http://deb.debian.org/debian sid/main amd64 libjemalloc2 amd64 5.3.0-2+b2 [275 kB] Get:284 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:285 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:286 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get:287 http://deb.debian.org/debian sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:288 http://deb.debian.org/debian sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:289 http://deb.debian.org/debian sid/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get:290 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:291 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:293 http://deb.debian.org/debian sid/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get:294 http://deb.debian.org/debian sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:295 http://deb.debian.org/debian sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get:296 http://deb.debian.org/debian sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:297 http://deb.debian.org/debian sid/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get:298 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:299 http://deb.debian.org/debian sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:300 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:301 http://deb.debian.org/debian sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get:302 http://deb.debian.org/debian sid/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:303 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:304 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.4 kB] Get:305 http://deb.debian.org/debian sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:306 http://deb.debian.org/debian sid/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:307 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get:308 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.7-1+b1 [147 kB] Get:309 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get:310 http://deb.debian.org/debian sid/main amd64 libnlopt0 amd64 2.7.1-6+b1 [178 kB] Get:311 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get:312 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get:313 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3 [16.3 kB] Get:314 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3 [16.1 kB] Get:315 http://deb.debian.org/debian sid/main amd64 libpython3.12t64 amd64 3.12.8-3 [2154 kB] Get:316 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.1-2 [858 kB] Get:317 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.1-2 [1975 kB] Get:318 http://deb.debian.org/debian sid/main amd64 libpython3.13 amd64 3.13.1-2 [2151 kB] Get:319 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:320 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:321 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get:322 http://deb.debian.org/debian sid/main amd64 libstaden-read14t64 amd64 1.15.0-1.1+b2 [268 kB] Get:323 http://deb.debian.org/debian sid/main amd64 libtbbmalloc2 amd64 2021.12.0-1 [48.9 kB] Get:324 http://deb.debian.org/debian sid/main amd64 libtbbbind-2-5 amd64 2021.12.0-1 [14.4 kB] Get:325 http://deb.debian.org/debian sid/main amd64 libtbb12 amd64 2021.12.0-1 [87.8 kB] Get:326 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get:327 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get:328 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get:329 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get:330 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB] Get:331 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:332 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB] Get:333 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:334 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:335 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB] Get:336 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.20-2 [103 kB] Get:337 http://deb.debian.org/debian sid/main amd64 littler all 0.3.20-2 [16.0 kB] Get:338 http://deb.debian.org/debian sid/main amd64 megadepth amd64 1.2.0-4+b1 [83.0 kB] Get:339 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:340 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get:341 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get:342 http://deb.debian.org/debian sid/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get:343 http://deb.debian.org/debian sid/main amd64 python3-humanize all 4.11.0-1 [52.7 kB] Get:344 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get:345 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.3-1.1 [120 kB] Get:346 http://deb.debian.org/debian sid/main amd64 python3-markdown all 3.7-2 [85.2 kB] Get:347 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get:348 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:349 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get:350 http://deb.debian.org/debian sid/main amd64 python3.12-tk amd64 3.12.8-3 [113 kB] Get:351 http://deb.debian.org/debian sid/main amd64 python3.13-tk amd64 3.13.1-2 [103 kB] Get:352 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.13.1-1 [9464 B] Get:353 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.4.0-1+b1 [79.8 kB] Get:354 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:355 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get:356 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.3.1-1 [264 kB] Get:357 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:358 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b6 [321 kB] Get:359 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.2-1 [31.0 kB] Get:360 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get:361 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-5.1 [95.2 kB] Get:362 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get:363 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.4.0+dfsg-1 [25.5 kB] Get:364 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:365 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.14.1-3 [20.5 MB] Get:366 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:367 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get:368 http://deb.debian.org/debian sid/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get:369 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get:370 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b3 [299 kB] Get:371 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:372 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.55.0-3 [1634 kB] Get:373 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.7-2+b1 [77.0 kB] Get:374 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get:375 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.8.3-3+b1 [5654 kB] Get:376 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get:377 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get:378 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.8-2 [41.6 kB] Get:379 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.2.3-4 [112 kB] Get:380 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:381 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:382 http://deb.debian.org/debian sid/main amd64 python3-fastjsonschema all 2.20.0-1 [21.8 kB] Get:383 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.21.0-2 [287 kB] Get:384 http://deb.debian.org/debian sid/main amd64 python3-referencing all 0.35.1-2 [23.5 kB] Get:385 http://deb.debian.org/debian sid/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get:386 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.19.2-5 [71.4 kB] Get:387 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get:388 http://deb.debian.org/debian sid/main amd64 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get:389 http://deb.debian.org/debian sid/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get:390 http://deb.debian.org/debian sid/main amd64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get:391 http://deb.debian.org/debian sid/main amd64 python3-plotly all 5.20.0+dfsg-1 [2726 kB] Get:392 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get:393 http://deb.debian.org/debian sid/main amd64 python3-pyaml-env all 1.2.1-2 [9032 B] Get:394 http://deb.debian.org/debian sid/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get:395 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 3.0.0-2 [62.5 kB] Get:396 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get:397 http://deb.debian.org/debian sid/main amd64 python3-rich all 13.9.4-1 [203 kB] Get:398 http://deb.debian.org/debian sid/main amd64 python3-rich-click all 1.6.0-1 [20.8 kB] Get:399 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:400 http://deb.debian.org/debian sid/main amd64 python3-colormath all 3.0.0-4 [34.7 kB] Get:401 http://deb.debian.org/debian sid/main amd64 python3-spectra all 0.0.11-4 [16.5 kB] Get:402 http://deb.debian.org/debian sid/main amd64 python3-lzstring all 1.0.4-3 [5544 B] Get:403 http://deb.debian.org/debian sid/main amd64 multiqc all 1.21+dfsg-2 [781 kB] Get:404 http://deb.debian.org/debian sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:405 http://deb.debian.org/debian sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:406 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get:407 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get:408 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get:409 http://deb.debian.org/debian sid/main amd64 python3-deeptoolsintervals amd64 0.1.9-3+b10 [51.3 kB] Get:410 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:411 http://deb.debian.org/debian sid/main amd64 sphinx-common all 8.1.3-3 [617 kB] Get:412 http://deb.debian.org/debian sid/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get:413 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB] Get:414 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.16.0-1 [114 kB] Get:415 http://deb.debian.org/debian sid/main amd64 python3-roman all 4.2-1 [10.4 kB] Get:416 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get:417 http://deb.debian.org/debian sid/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get:418 http://deb.debian.org/debian sid/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get:419 http://deb.debian.org/debian sid/main amd64 python3-sphinx all 8.1.3-3 [468 kB] Get:420 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get:421 http://deb.debian.org/debian sid/main amd64 python3-numpydoc all 1.8.0-1 [51.4 kB] Get:422 http://deb.debian.org/debian sid/main amd64 python3-py2bit amd64 0.3.2-1 [19.2 kB] Get:423 http://deb.debian.org/debian sid/main amd64 python3-pybigwig amd64 0.3.23+dfsg-1+b1 [39.5 kB] Get:424 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.22.1+ds-2+b2 [4412 kB] Get:425 http://deb.debian.org/debian sid/main amd64 python3-deeptools all 3.5.5+dfsg-1 [149 kB] Get:426 http://deb.debian.org/debian sid/main amd64 python3-htseq amd64 2.0.9+dfsg-1 [438 kB] Get:427 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get:428 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.42.1+dfsg-2 [1894 kB] Get:429 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.38.1-1 [2305 kB] Get:430 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 5.2.3+dfsg-1 [178 kB] Get:431 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] Get:432 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get:433 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get:434 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get:435 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [401 kB] Get:436 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:437 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get:438 http://deb.debian.org/debian sid/main amd64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get:439 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get:440 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get:441 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:442 http://deb.debian.org/debian sid/main amd64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get:443 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.44.0-1 [622 kB] Get:444 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges amd64 1.56.2+dfsg-1 [1843 kB] Get:445 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.4.1-1 [510 kB] Get:446 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get:447 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.64.0-4 [2132 kB] Get:448 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get:449 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB] Get:450 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:451 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get:452 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.4.1+dfsg-1 [524 kB] Get:453 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.4.8+dfsg-1 [1254 kB] Get:454 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray amd64 0.30.1+dfsg-1 [1847 kB] Get:455 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get:456 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get:457 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:458 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:459 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:460 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:461 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:462 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:463 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get:464 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.38.0-2 [1325 kB] Get:465 http://deb.debian.org/debian sid/main amd64 r-cran-locfit amd64 1.5-9.10-1 [515 kB] Get:466 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB] Get:467 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get:468 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get:469 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:470 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get:471 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get:472 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get:473 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.166-1 [2330 kB] Get:474 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB] Get:475 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get:476 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get:477 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get:478 http://deb.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get:479 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:480 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get:481 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get:482 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get:483 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:484 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:485 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:486 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get:487 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:488 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get:489 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get:490 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get:491 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:492 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB] Get:493 http://deb.debian.org/debian sid/main amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] Get:494 http://deb.debian.org/debian sid/main amd64 r-bioc-deseq2 amd64 1.44.0+dfsg-1 [1283 kB] Get:495 http://deb.debian.org/debian sid/main amd64 r-cran-xml amd64 3.99-0.17-1 [1761 kB] Get:496 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.72.1+dfsg-1 [13.3 MB] Get:497 http://deb.debian.org/debian sid/main amd64 r-cran-bitops amd64 1.0-8-1 [30.7 kB] Get:498 http://deb.debian.org/debian sid/main amd64 r-bioc-rhtslib amd64 3.0.0+dfsg-1 [1334 kB] Get:499 http://deb.debian.org/debian sid/main amd64 r-bioc-rsamtools amd64 2.20.0+dfsg-1 [3600 kB] Get:500 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicalignments amd64 1.40.0-1 [2160 kB] Get:501 http://deb.debian.org/debian sid/main amd64 r-bioc-biocio all 1.14.0+dfsg-1 [210 kB] Get:502 http://deb.debian.org/debian sid/main amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [799 kB] Get:503 http://deb.debian.org/debian sid/main amd64 r-cran-rjson amd64 0.2.23-1 [100.0 kB] Get:504 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Get:505 http://deb.debian.org/debian sid/main amd64 r-cran-restfulr amd64 0.0.15-1 [382 kB] Get:506 http://deb.debian.org/debian sid/main amd64 r-bioc-rtracklayer amd64 1.64.0-1 [5061 kB] Get:507 http://deb.debian.org/debian sid/main amd64 r-bioc-tximport all 1.32.0+dfsg-1 [91.2 kB] Get:508 http://deb.debian.org/debian sid/main amd64 r-cran-corrplot all 0.94-1 [134 kB] Get:509 http://deb.debian.org/debian sid/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get:510 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB] Get:511 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get:512 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB] Get:513 http://deb.debian.org/debian sid/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB] Get:514 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB] Get:515 http://deb.debian.org/debian sid/main amd64 r-cran-promises amd64 1.3.0+dfsg-1 [284 kB] Get:516 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB] Get:517 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:518 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get:519 http://deb.debian.org/debian sid/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Get:520 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 1.9.2-2 [122 kB] Get:521 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get:522 http://deb.debian.org/debian sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get:523 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get:524 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 1.6.4+dfsg-1 [247 kB] Get:525 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get:526 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB] Get:527 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get:528 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get:529 http://deb.debian.org/debian sid/main amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [175 kB] Get:530 http://deb.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.16.2+dfsg-1 [1978 kB] Get:531 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 1.0.0-1 [112 kB] Get:532 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.49+dfsg-1 [546 kB] Get:533 http://deb.debian.org/debian sid/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get:534 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.49+dfsg-1 [861 kB] Get:535 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.53-1 [146 kB] Get:536 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get:537 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] Get:538 http://deb.debian.org/debian sid/main amd64 r-cran-dt all 0.33+dfsg-1 [248 kB] Get:539 http://deb.debian.org/debian sid/main amd64 r-cran-ggrepel amd64 0.9.5-2 [251 kB] Get:540 http://deb.debian.org/debian sid/main amd64 r-cran-ggsci all 3.2.0-1 [2103 kB] Get:541 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:542 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Get:543 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Get:544 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB] Get:545 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.4-1 [895 kB] Get:546 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:547 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get:548 http://deb.debian.org/debian sid/main amd64 r-cran-cowplot all 1.1.3+dfsg-1 [638 kB] Get:549 http://deb.debian.org/debian sid/main amd64 r-cran-ggsignif all 0.6.4-1 [589 kB] Get:550 http://deb.debian.org/debian sid/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:551 http://deb.debian.org/debian sid/main amd64 r-cran-polynom all 1.4-1+dfsg-1 [92.5 kB] Get:552 http://deb.debian.org/debian sid/main amd64 r-cran-backports amd64 1.5.0-2 [121 kB] Get:553 http://deb.debian.org/debian sid/main amd64 r-cran-broom all 1.0.7+dfsg-1 [1846 kB] Get:554 http://deb.debian.org/debian sid/main amd64 r-cran-cardata all 3.0.5-1 [1797 kB] Get:555 http://deb.debian.org/debian sid/main amd64 r-cran-formula all 1.2-5-1 [158 kB] Get:556 http://deb.debian.org/debian sid/main amd64 r-cran-nnet amd64 7.3-19-2 [111 kB] Get:557 http://deb.debian.org/debian sid/main amd64 r-cran-boot all 1.3-31-1 [639 kB] Get:558 http://deb.debian.org/debian sid/main amd64 r-cran-minqa amd64 1.2.8-1 [118 kB] Get:559 http://deb.debian.org/debian sid/main amd64 r-cran-nloptr amd64 2.1.1-1 [256 kB] Get:560 http://deb.debian.org/debian sid/main amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1411 kB] Get:561 http://deb.debian.org/debian sid/main amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] Get:562 http://deb.debian.org/debian sid/main amd64 r-cran-lme4 amd64 1.1-35.5-1 [4126 kB] Get:563 http://deb.debian.org/debian sid/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get:564 http://deb.debian.org/debian sid/main amd64 r-cran-deriv all 4.1.6-1 [151 kB] Get:565 http://deb.debian.org/debian sid/main amd64 r-cran-modelr all 0.1.11-1 [204 kB] Get:566 http://deb.debian.org/debian sid/main amd64 r-cran-microbenchmark amd64 1.5.0-1 [67.1 kB] Get:567 http://deb.debian.org/debian sid/main amd64 r-cran-doby all 4.6.24-1 [4777 kB] Get:568 http://deb.debian.org/debian sid/main amd64 r-cran-pbkrtest all 0.5.3-1 [180 kB] Get:569 http://deb.debian.org/debian sid/main amd64 r-cran-sparsem amd64 1.84-2-1+b1 [794 kB] Get:570 http://deb.debian.org/debian sid/main amd64 r-cran-matrixmodels all 0.5-3-1 [364 kB] Get:571 http://deb.debian.org/debian sid/main amd64 r-cran-survival amd64 3.7-0-1 [6305 kB] Get:572 http://deb.debian.org/debian sid/main amd64 r-cran-class amd64 7.3-22-2 [87.3 kB] Get:573 http://deb.debian.org/debian sid/main amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] Get:574 http://deb.debian.org/debian sid/main amd64 r-cran-e1071 amd64 1.7-16-1 [562 kB] Get:575 http://deb.debian.org/debian sid/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get:576 http://deb.debian.org/debian sid/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get:577 http://deb.debian.org/debian sid/main amd64 r-cran-modelmetrics amd64 1.2.2.2-1+b1 [125 kB] Get:578 http://deb.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Get:579 http://deb.debian.org/debian sid/main amd64 r-cran-proc amd64 1.18.5-1 [987 kB] Get:580 http://deb.debian.org/debian sid/main amd64 r-cran-tzdb amd64 0.4.0-2 [499 kB] Get:581 http://deb.debian.org/debian sid/main amd64 r-cran-clock amd64 0.7.1-1 [1784 kB] Get:582 http://deb.debian.org/debian sid/main amd64 r-cran-gower amd64 1.0.1-1 [207 kB] Get:583 http://deb.debian.org/debian sid/main amd64 r-cran-hardhat all 1.4.0+dfsg-1 [668 kB] Get:584 http://deb.debian.org/debian sid/main amd64 r-cran-rpart amd64 4.1.23-1 [685 kB] Get:585 http://deb.debian.org/debian sid/main amd64 r-cran-shape all 1.4.6.1-1 [752 kB] Get:586 http://deb.debian.org/debian sid/main amd64 r-cran-diagram all 1.6.5-2 [656 kB] Get:587 http://deb.debian.org/debian sid/main amd64 r-cran-kernsmooth amd64 2.23-24-1 [92.7 kB] Get:588 http://deb.debian.org/debian sid/main amd64 r-cran-globals all 0.16.3-1 [120 kB] Get:589 http://deb.debian.org/debian sid/main amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] Get:590 http://deb.debian.org/debian sid/main amd64 r-cran-parallelly amd64 1.38.0-1 [388 kB] Get:591 http://deb.debian.org/debian sid/main amd64 r-cran-future all 1.34.0+dfsg-1 [649 kB] Get:592 http://deb.debian.org/debian sid/main amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] Get:593 http://deb.debian.org/debian sid/main amd64 r-cran-progressr all 0.14.0-1 [337 kB] Get:594 http://deb.debian.org/debian sid/main amd64 r-cran-squarem all 2021.1-1 [179 kB] Get:595 http://deb.debian.org/debian sid/main amd64 r-cran-lava all 1.7.3+dfsg-1 [2207 kB] Get:596 http://deb.debian.org/debian sid/main amd64 r-cran-prodlim amd64 2024.06.25-1 [416 kB] Get:597 http://deb.debian.org/debian sid/main amd64 r-cran-ipred amd64 0.9-15-1 [387 kB] Get:598 http://deb.debian.org/debian sid/main amd64 r-cran-timechange amd64 0.3.0-1 [173 kB] Get:599 http://deb.debian.org/debian sid/main amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1018 kB] Get:600 http://deb.debian.org/debian sid/main amd64 r-cran-timedate amd64 4041.110-1 [1211 kB] Get:601 http://deb.debian.org/debian sid/main amd64 r-cran-recipes all 1.1.0+dfsg-1 [2047 kB] Get:602 http://deb.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:603 http://deb.debian.org/debian sid/main amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3446 kB] Get:604 http://deb.debian.org/debian sid/main amd64 r-cran-conquer amd64 1.3.3-1 [471 kB] Get:605 http://deb.debian.org/debian sid/main amd64 r-cran-quantreg amd64 5.99.1-1 [1441 kB] Get:606 http://deb.debian.org/debian sid/main amd64 r-cran-foreign amd64 0.8.87-1 [253 kB] Get:607 http://deb.debian.org/debian sid/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB] Get:608 http://deb.debian.org/debian sid/main amd64 r-cran-forcats all 1.0.0-1 [413 kB] Get:609 http://deb.debian.org/debian sid/main amd64 r-cran-hms all 1.1.3-1 [104 kB] Get:610 http://deb.debian.org/debian sid/main amd64 r-cran-clipr all 0.8.0-1 [53.0 kB] Get:611 http://deb.debian.org/debian sid/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get:612 http://deb.debian.org/debian sid/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get:613 http://deb.debian.org/debian sid/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get:614 http://deb.debian.org/debian sid/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB] Get:615 http://deb.debian.org/debian sid/main amd64 r-cran-vroom amd64 1.6.5-1 [830 kB] Get:616 http://deb.debian.org/debian sid/main amd64 r-cran-readr amd64 2.1.5-1 [759 kB] Get:617 http://deb.debian.org/debian sid/main amd64 r-cran-haven amd64 2.5.4-1 [342 kB] Get:618 http://deb.debian.org/debian sid/main amd64 r-cran-rematch all 2.0.0-1 [18.2 kB] Get:619 http://deb.debian.org/debian sid/main amd64 r-cran-cellranger all 1.1.0-3 [100 kB] Get:620 http://deb.debian.org/debian sid/main amd64 r-cran-readxl amd64 1.4.3-1 [723 kB] Get:621 http://deb.debian.org/debian sid/main amd64 r-cran-writexl amd64 1.5.1-1 [147 kB] Get:622 http://deb.debian.org/debian sid/main amd64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get:623 http://deb.debian.org/debian sid/main amd64 r-cran-r.oo all 1.26.0-1 [961 kB] Get:624 http://deb.debian.org/debian sid/main amd64 r-cran-r.utils all 2.12.3-1 [1396 kB] Get:625 http://deb.debian.org/debian sid/main amd64 r-cran-zip amd64 2.3.1-1 [118 kB] Get:626 http://deb.debian.org/debian sid/main amd64 r-cran-openxlsx amd64 4.2.7.1-1 [2014 kB] Get:627 http://deb.debian.org/debian sid/main amd64 r-cran-rio all 1.2.3-1 [531 kB] Get:628 http://deb.debian.org/debian sid/main amd64 r-cran-car all 3.1-3-1 [1533 kB] Get:629 http://deb.debian.org/debian sid/main amd64 r-cran-rstatix all 0.7.2-1 [609 kB] Get:630 http://deb.debian.org/debian sid/main amd64 r-cran-ggpubr all 0.6.0-1 [2080 kB] Get:631 http://deb.debian.org/debian sid/main amd64 r-cran-miniui all 0.1.1.1-3 [35.9 kB] Get:632 http://deb.debian.org/debian sid/main amd64 r-cran-shinyjs all 2.1.0-1 [1009 kB] Get:633 http://deb.debian.org/debian sid/main amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1212 kB] Get:634 http://deb.debian.org/debian sid/main amd64 r-cran-plotly all 4.10.4+dfsg-2 [3634 kB] Get:635 http://deb.debian.org/debian sid/main amd64 r-cran-gprofiler2 all 0.2.3+dfsg-1 [121 kB] Get:636 http://deb.debian.org/debian sid/main amd64 r-cran-pheatmap all 1.0.12-2 [77.9 kB] Get:637 http://deb.debian.org/debian sid/main amd64 salmon amd64 1.10.2+ds1-1+b4 [3404 kB] Get:638 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.20-3 [653 kB] Get:639 http://deb.debian.org/debian sid/main amd64 python3-configargparse all 1.7-2 [31.4 kB] Get:640 http://deb.debian.org/debian sid/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:641 http://deb.debian.org/debian sid/main amd64 python3-datrie amd64 0.8.2-5+b1 [174 kB] Get:642 http://deb.debian.org/debian sid/main amd64 python3-smmap all 6.0.0-1 [20.1 kB] Get:643 http://deb.debian.org/debian sid/main amd64 python3-gitdb all 4.0.11-1 [45.5 kB] Get:644 http://deb.debian.org/debian sid/main amd64 python3-git all 3.1.37-3 [137 kB] Get:645 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get:646 http://deb.debian.org/debian sid/main amd64 python3-pulp all 2.7.0+dfsg-4 [72.4 kB] Get:647 http://deb.debian.org/debian sid/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get:648 http://deb.debian.org/debian sid/main amd64 python3-retry all 0.9.2-3 [7088 B] Get:649 http://deb.debian.org/debian sid/main amd64 python3-wrapt amd64 1.15.0-4 [43.5 kB] Get:650 http://deb.debian.org/debian sid/main amd64 python3-smart-open all 7.1.0-1 [98.7 kB] Get:651 http://deb.debian.org/debian sid/main amd64 python3-stopit all 1.1.2-3 [12.8 kB] Get:652 http://deb.debian.org/debian sid/main amd64 python3-throttler all 1.2.2-2 [7072 B] Get:653 http://deb.debian.org/debian sid/main amd64 python3-toposort all 1.10-2 [7336 B] Get:654 http://deb.debian.org/debian sid/main amd64 python3-dpath all 2.2.0-1 [19.9 kB] Get:655 http://deb.debian.org/debian sid/main amd64 python3-plac all 1.4.3-2 [65.7 kB] Get:656 http://deb.debian.org/debian sid/main amd64 python3-yte all 1.5.4-1 [13.6 kB] Get:657 http://deb.debian.org/debian sid/main amd64 python3-ratelimiter amd64 1.2.0.post0-4 [5740 B] Get:658 http://deb.debian.org/debian sid/main amd64 snakemake all 7.32.4-6 [318 kB] Get:659 http://deb.debian.org/debian sid/main amd64 trim-galore all 0.6.10-1 [17.8 MB] Get:660 http://deb.debian.org/debian sid/main amd64 pigx-rnaseq all 0.1.1-1 [61.7 kB] Preconfiguring packages ... Fetched 601 MB in 13s (47.9 MB/s) Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5027 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.1.7-1+b3_amd64.deb ... Unpacking libapparmor1:amd64 (3.1.7-1+b3) ... Selecting previously unselected package libsystemd-shared:amd64. Preparing to unpack .../libsystemd-shared_257.1-4_amd64.deb ... Unpacking libsystemd-shared:amd64 (257.1-4) ... Selecting previously unselected package systemd. Preparing to unpack .../systemd_257.1-4_amd64.deb ... Unpacking systemd (257.1-4) ... Setting up libapparmor1:amd64 (3.1.7-1+b3) ... Setting up libsystemd-shared:amd64 (257.1-4) ... Setting up systemd (257.1-4) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. [ESC][0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[ESC][0m [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5982 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_257.1-4_amd64.deb ... Unpacking systemd-sysv (257.1-4) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../1-libdbus-1-3_1.16.0-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.16.0-1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../2-dbus-bin_1.16.0-1_amd64.deb ... Unpacking dbus-bin (1.16.0-1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../3-dbus-session-bus-common_1.16.0-1_all.deb ... Unpacking dbus-session-bus-common (1.16.0-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../4-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../5-dbus-daemon_1.16.0-1_amd64.deb ... Unpacking dbus-daemon (1.16.0-1) ... Selecting previously unselected package adduser. Preparing to unpack .../6-adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package dbus-system-bus-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6125 files and directories currently installed.) Preparing to unpack .../dbus-system-bus-common_1.16.0-1_all.deb ... Unpacking dbus-system-bus-common (1.16.0-1) ... Selecting previously unselected package dbus. Preparing to unpack .../dbus_1.16.0-1_amd64.deb ... Unpacking dbus (1.16.0-1) ... Selecting previously unselected package pigz. Preparing to unpack .../archives/pigz_2.8-1_amd64.deb ... Unpacking pigz (2.8-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.8-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_amd64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:amd64 (3.12.8-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6474 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.5-2+b1_amd64.deb ... Unpacking libncursesw6:amd64 (6.5-2+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../15-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7039 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... 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Setting up libxcomposite1:amd64 (1:0.4.6-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up dbus-bin (1.16.0-1) ... Setting up liblsan0:amd64 (14.2.0-11) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libitm1:amd64 (14.2.0-11) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libxkbcommon0:amd64 (1.7.0-2) ... Setting up libwayland-client0:amd64 (1.23.0-1+b1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.6-1) ... Setting up libwayland-server0:amd64 (1.23.0-1+b1) ... Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxdamage1:amd64 (1:1.1.6-1+b2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b3) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-15) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up libnss3:amd64 (2:3.106-1) ... Setting up dbus-daemon (1.16.0-1) ... Setting up libpaper-utils (2.2.5-0.3) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Setting up libtbbbind-2-5:amd64 (2021.12.0-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.11+ds-2) ... Setting up libperl5.40:amd64 (5.40.0-8) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up perl (5.40.0-8) ... Setting up libglib2.0-0t64:amd64 (2.82.4-1) ... Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (3.1.11.1+ds-2) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b3) ... Setting up libjs-jquery-metadata (12-4) ... Setting up dbus (1.16.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b2) ... Setting up ucf (3.0046) ... Setting up libjs-sphinxdoc (8.1.3-3) ... Setting up coinor-libosi1v5:amd64 (0.108.10+ds-1+b1) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... Setting up libwayland-cursor0:amd64 (1.23.0-1+b1) ... Setting up xml-core (0.19) ... Setting up libjson-perl (4.10000-1) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libpam-systemd:amd64 (257.1-4) ... Setting up libc6-dev:amd64 (2.40-4) ... Setting up libharfbuzz0b:amd64 (10.1.0-1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1+b1) ... Setting up libsnappy-java (1.1.10.7-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libgcc-14-dev:amd64 (14.2.0-11) ... Setting up libcommons-codec-java (1.17.1-1) ... Setting up libstdc++-14-dev:amd64 (14.2.0-11) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-2) ... Setting up libavahi-client3:amd64 (0.8-15) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libpython3.13:amd64 (3.13.1-2) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up gtk-update-icon-cache (4.16.7+ds-1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b3) ... Setting up libboost1.83-dev:amd64 (1.83.0-4) ... Setting up libatk1.0-0t64:amd64 (2.54.0-1) ... Setting up openjdk-21-jre-headless:amd64 (21.0.6~6ea-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libcommons-io-java (2.17.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1+b3) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libxcursor1:amd64 (1:1.2.2-1+b1) ... Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up python3.12-tk (3.12.8-3) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Setting up libcloudproviders0:amd64 (0.3.6-1+b1) ... Setting up libtbb12:amd64 (2021.12.0-1) ... Setting up libfindbin-libs-perl (3.0.2-1) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up python3.13-tk (3.13.1-2) ... Setting up libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... Setting up libcolord2:amd64 (1.4.7-1+b2) ... Setting up liberror-perl (0.17029-2) ... Setting up libdconf1:amd64 (0.40.0-4+b3) ... Setting up dbus-user-session (1.16.0-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up coinor-libclp1:amd64 (1.17.10+ds-1) ... Setting up libatspi2.0-0t64:amd64 (2.54.0-1) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up sphinx-common (8.1.3-3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libcairo-gobject2:amd64 (1.18.2-2) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up coinor-libcgl1:amd64 (0.60.9+ds-1) ... Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libcups2t64:amd64 (2.4.10-2+b1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7+b1) ... Setting up libatk-bridge2.0-0t64:amd64 (2.54.0-1) ... Setting up mesa-libgallium:amd64 (24.2.8-1) ... Setting up libngs-jni:amd64 (3.0.9+dfsg-7+b1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-3) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libcurl4t64:amd64 (8.11.1-1) ... Setting up libgbm1:amd64 (24.2.8-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.8-3) ... Setting up libgl1-mesa-dri:amd64 (24.2.8-1) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1) ... Setting up dconf-service (0.40.0-4+b3) ... Setting up libpython3.12t64:amd64 (3.12.8-3) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-squarem (2021.1-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up coinor-libcbc3.1:amd64 (2.10.12+ds-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up git (1:2.45.2-1.3) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up r-cran-formatr (1.14-2) ... Setting up r-cran-formula (1.2-5-1) ... Setting up r-cran-zip (2.3.1-1) ... Setting up r-cran-xml (3.99-0.17-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up r-cran-sparsem (1.84-2-1+b1) ... Setting up r-cran-statmod (1.5.0-1) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up r-cran-nnet (7.3-19-2) ... Setting up libbigwig0t64:amd64 (0.4.7+dfsg-3.1+b2) ... Setting up r-cran-lazyeval (0.2.2-1+b1) ... Setting up r-cran-clipr (0.8.0-1) ... Setting up r-cran-polynom (1.4-1+dfsg-1) ... Setting up r-cran-commonmark (1.9.2-2) ... Setting up r-cran-rjson (0.2.23-1) ... Setting up r-cran-proxy (0.4-27-1) ... Setting up libngs-java:amd64 (3.0.9+dfsg-7+b1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up libhtsjdk-java (4.1.0+dfsg-2) ... Setting up r-bioc-genomeinfodbdata (1.2.12-1) ... Setting up r-cran-microbenchmark (1.5.0-1) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up r-cran-littler (0.3.20-2) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-fs (1.6.4+dfsg-1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-curl (5.2.3+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-nloptr (2.1.1-1) ... Setting up r-cran-boot (1.3-31-1) ... Setting up r-cran-rematch (2.0.0-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up libglx-mesa0:amd64 (24.2.8-1) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-cran-listenv (0.9.1+dfsg-1) ... Setting up littler (0.3.20-2) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-4+b3) ... Setting up r-bioc-matrixgenerics (1.16.0-2) ... Setting up r-cran-xfun (0.49+dfsg-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up r-cran-backports (1.5.0-2) ... Setting up r-cran-deriv (4.1.6-1) ... Setting up r-cran-mime (0.12-2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-gower (1.0.1-1) ... Setting up r-cran-evaluate (1.0.0-1) ... Setting up r-cran-timedate (4041.110-1) ... Setting up r-cran-highr (0.11+dfsg-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-prettyunits (1.2.0-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-cardata (3.0.5-1) ... Setting up libstaden-read14t64:amd64 (1.15.0-1.1+b2) ... Setting up r-cran-mass (7.3-61-1) ... Setting up python3 (3.12.8-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up r-cran-data.table (1.16.2+dfsg-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up r-cran-glue (1.8.0-1) ... Setting up r-cran-foreign (0.8.87-1) ... Setting up r-cran-writexl (1.5.1-1) ... Setting up r-cran-bit (4.0.5-1) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-8-1) ... Setting up python3-plac (1.4.3-2) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up python3-tz (2024.2-1) ... Setting up r-cran-progressr (0.14.0-1) ... Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... Setting up samtools (1.20-3) ... Setting up python3-ratelimiter (1.2.0.post0-4) ... Setting up r-cran-shape (1.4.6.1-1) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up salmon (1.10.2+ds1-1+b4) ... Setting up r-cran-r.methodss3 (1.8.2-1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up r-cran-corrplot (0.94-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1.1) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up python3-packaging (24.2-1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up r-cran-parallelly (1.38.0-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up coinor-cbc (2.10.12+ds-1) ... Setting up r-cran-stringi (1.8.4-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-plyr (1.8.9-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up python3-mdurl (0.1.2-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-diagram (1.6.5-2) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-dpath (2.2.0-1) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up megadepth (1.2.0-4+b1) ... Setting up r-cran-gtable (0.3.6+dfsg-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-wrapt (1.15.0-4) ... Setting up python3-markdown (3.7-2) ... Setting up python3-throttler (1.2.2-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up r-cran-later (1.3.2+dfsg-1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-htmltools (0.5.8.1-1) ... Setting up r-cran-tinytex (0.53-1) ... Setting up python3-urllib3 (2.2.3-4) ... Setting up r-bioc-tximport (1.32.0+dfsg-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up r-cran-kernsmooth (2.23-24-1) ... Setting up r-cran-knitr (1.49+dfsg-1) ... Setting up python3-rpds-py (0.21.0-2) ... Setting up python3-fastjsonschema (2.20.0-1) ... Setting up r-cran-mgcv (1.9-1-1) ... Setting up hisat2 (2.2.1-5+b1) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-py2bit (0.3.2-1) ... Setting up r-cran-rcpparmadillo (14.2.2-1-1) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up python3-datrie:amd64 (0.8.2-5+b1) ... Setting up r-cran-tzdb (0.4.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lzstring (1.0.4-3) ... Setting up r-cran-globals (0.16.3-1) ... Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-smmap (6.0.0-1) ... Setting up r-cran-restfulr (0.0.15-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up python3-jupyter-core (5.7.2-5) ... Setting up libgtk-3-common (3.24.43-4) ... Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up python3-toposort (1.10-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-configargparse (1.7-2) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up r-cran-minqa (1.2.8-1) ... Setting up python3-attr (24.2.0-1) ... Setting up r-cran-openssl (2.2.0+dfsg-1) ... Setting up python3-pysam (0.22.1+ds-2+b2) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up python3-importlib-metadata (8.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up r-cran-class (7.3-22-2) ... Setting up python3-smart-open (7.1.0-1) ... Setting up r-bioc-biocparallel (1.38.0-2) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up r-cran-modelmetrics (1.2.2.2-1+b1) ... Setting up r-cran-openxlsx (4.2.7.1-1) ... Setting up python3-deeptoolsintervals (0.1.9-3+b10) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.4.0+dfsg-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-pulp (2.7.0+dfsg-4) ... /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:322: SyntaxWarning: invalid escape sequence '\ ' """ Setting up r-cran-matrixmodels (0.5-3-1) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b3) ... Setting up r-bioc-rhtslib (3.0.0+dfsg-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-typeguard (4.4.1-1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-clock (0.7.1-1) ... Setting up r-cran-proc (1.18.5-1) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-tk:amd64 (3.13.1-1) ... Setting up r-cran-survival (3.7-0-1) ... Setting up r-bioc-biocio (1.14.0+dfsg-1) ... Setting up python3-gitdb (4.0.11-1) ... Setting up r-cran-r.oo (1.26.0-1) ... Setting up python3-click (8.1.7-2) ... Setting up r-cran-future (1.34.0+dfsg-1) ... Setting up r-cran-forcats (1.0.0-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-lme4 (1.1-35.5-1) ... Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... Setting up python3-yte (1.5.4-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-cran-future.apply (1.11.2+dfsg-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pyaml-env (1.2.1-2) ... /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' type_tag_pattern = re.compile(f'({type_tag}\w+\s)') Setting up r-cran-timechange (0.3.0-1) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up python3-git (3.1.37-3) ... Setting up libgtk-3-0t64:amd64 (3.24.43-4) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-lava (1.7.3+dfsg-1) ... Setting up r-cran-promises (1.3.0+dfsg-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up r-cran-e1071 (1.7-16-1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up r-cran-hardhat (1.4.0+dfsg-1) ... Setting up r-cran-dplyr (1.1.4-4) ... Setting up r-cran-progress (1.2.3-1) ... Setting up python3-referencing (0.35.1-2) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up r-cran-pheatmap (1.0.12-2) ... Setting up r-cran-lubridate (1.9.3+dfsg-1) ... Setting up r-cran-r.utils (2.12.3-1) ... Setting up r-cran-vroom (1.6.5-1) ... Setting up r-cran-prodlim (2024.06.25-1) ... Setting up python3-py (1.11.0-2) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-cran-ggsignif (0.6.4-1) ... Setting up r-cran-cellranger (1.1.0-3) ... Setting up r-cran-httpuv (1.6.15+dfsg-1) ... Setting up r-cran-rpart (4.1.23-1) ... Setting up r-cran-ggsci (3.2.0-1) ... Setting up python3-networkx (3.2.1-5) ... Setting up r-cran-ipred (0.9-15-1) ... Setting up python3-fs (2.4.16-5.1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-cran-readr (2.1.5-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up r-cran-ggrepel (0.9.5-2) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up python3-retry (0.9.2-3) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up r-cran-recipes (1.1.0+dfsg-1) ... Setting up python3-colormath (3.0.0-4) ... /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying adaptation matrix: %s", adaptation) /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:684: SyntaxWarning: invalid escape sequence '\s' """ /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:788: SyntaxWarning: invalid escape sequence '\s' """ /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying RGB conversion matrix: %s->%s", /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Target RGB space: %s", target_rgb) /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Target native illuminant: %s", target_illum) /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying transformation from %s to %s ", /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* New values: %.3f, %.3f, %.3f", /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Original illuminant: %s", self.illuminant) /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' logger.debug(" \- Target illuminant: %s", target_illuminant) /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' logger.debug(" \* Applying transformation from %s to %s ", Setting up python3-pybigwig (0.3.23+dfsg-1+b1) ... Setting up python3-stopit (1.1.2-3) ... Setting up python3-contourpy (1.3.1-1) ... Setting up python3-humanize (4.11.0-1) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-htseq (2.0.9+dfsg-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up python3-dnaio (1.2.3-1) ... Setting up r-cran-cowplot (1.1.3+dfsg-1) ... Setting up r-cran-readxl (1.4.3-1) ... Setting up python3-scipy (1.14.1-3) ... Setting up python3-spectra (0.0.11-4) ... Setting up python3-rich (13.9.4-1) ... Setting up r-cran-haven (2.5.4-1) ... Setting up r-bioc-genomicranges (1.56.2+dfsg-1) ... Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... Setting up r-cran-caret (6.0-94+dfsg-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up r-cran-shinyjs (2.1.0-1) ... Setting up r-cran-miniui (0.1.1.1-3) ... Setting up python3-cutadapt (4.7-2+b2) ... Setting up r-cran-broom (1.0.7+dfsg-1) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up r-cran-conquer (1.3.3-1) ... Setting up r-bioc-rsamtools (2.20.0+dfsg-1) ... Setting up python3-rich-click (1.6.0-1) ... Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... Setting up r-cran-rio (1.2.3-1) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-cran-quantreg (5.99.1-1) ... Setting up cutadapt (4.7-2) ... Setting up r-bioc-deseq2 (1.44.0+dfsg-1) ... Setting up python3-nbformat (5.9.1-1) ... Setting up r-cran-modelr (0.1.11-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... Setting up python3-plotly (5.20.0+dfsg-1) ... Setting up r-cran-doby (4.6.24-1) ... Setting up r-bioc-genomicalignments (1.40.0-1) ... Setting up r-bioc-rtracklayer (1.64.0-1) ... Setting up r-cran-dt (0.33+dfsg-1) ... Setting up trim-galore (0.6.10-1) ... Setting up r-cran-plotly (4.10.4+dfsg-2) ... Setting up r-cran-pbkrtest (0.5.3-1) ... Setting up r-cran-car (3.1-3-1) ... Setting up r-cran-gprofiler2 (0.2.3+dfsg-1) ... Setting up r-cran-rstatix (0.7.2-1) ... Setting up r-cran-ggpubr (0.6.0-1) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up multiqc (1.21+dfsg-2) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for systemd (257.1-4) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jre:amd64 (21.0.6~6ea-1) ... Setting up default-jre-headless (2:1.21-76) ... Setting up default-jre (2:1.21-76) ... Setting up fastqc (0.12.1+dfsg-4) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up snakemake (7.32.4-6) ... Setting up python3-sphinx (8.1.3-3) ... Setting up python3-numpydoc (1.8.0-1) ... Setting up python3-deeptools (3.5.5+dfsg-1) ... Setting up pigx-rnaseq (0.1.1-1) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 1m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.1.1-1'] 1m15.4s INFO: Running scripts post_install 1m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_install_exceptions'] 1m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_install_exceptions'] 1m15.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 1m18.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 1m23.8s ERROR: WARN: Broken symlinks: /var/log/README -> ../../usr/share/doc/systemd/README.logs /etc/vconsole.conf -> default/keyboard /etc/default/locale -> ../locale.conf /usr/lib/jvm/java-21-openjdk-amd64/lib/libatk-wrapper.so -> ../../../x86_64-linux-gnu/jni/libatk-wrapper.so (openjdk-21-jre:amd64) /usr/share/doc/python3.13-tk/README.Tk -> ../python3.13/README.Tk (python3.13-tk) /usr/share/doc/python3.12-tk/README.Tk -> ../python3.12/README.Tk (python3.12-tk) /usr/share/doc/r-base-core/NEWS.gz -> changelog.gz (r-base-core) /usr/share/doc/unzip/changelog.gz -> History.600.gz (unzip) /usr/share/doc/zip/changelog.gz -> CHANGES.gz (zip) /usr/share/doc/fonts-lyx/NEWS.gz -> changelog.gz (fonts-lyx) /usr/share/doc/libgtk-3-0t64/README.md -> ../libgtk-3-common/README.md (libgtk-3-0t64:amd64) /usr/share/doc/libgtk-3-0t64/NEWS.gz -> ../libgtk-3-common/NEWS.gz (libgtk-3-0t64:amd64) /usr/share/doc/libxml2/NEWS.gz -> changelog.gz (libxml2:amd64) /usr/share/doc/python3.12/python-policy.txt.gz -> ../python3/python-policy.txt.gz (python3) /usr/share/doc/python3.12/changelog.gz -> NEWS.gz (python3.12) /usr/share/doc/perl/Changes.gz -> changelog.gz (perl) 1m27.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', '-ac', '--ignore-obsolete'] 1m33.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', '-ac', '--ignore-obsolete'] 1m33.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m33.6s DUMP: 0.15.6 1m33.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m33.6s INFO: Running adequate version 0.15.6 now. 1m33.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'pigx-rnaseq'] 1m33.7s DUMP: pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/snakefile.py 1m33.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'pigx-rnaseq'] 1m33.7s ERROR: WARN: Inadequate results from running adequate! pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/snakefile.py 1m33.7s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 1m33.7s INFO: Running scripts pre_remove 1m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_exceptions'] 1m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/pre_remove_exceptions'] 1m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m44.0s DUMP: install ok installed adduser adduser 3.137 install ok installed adwaita-icon-theme adwaita-icon-theme 47.0-2 install ok installed apt apt 2.9.19 install ok installed at-spi2-common at-spi2-common 2.54.0-1 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.37-1 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.40.2-12 install ok installed ca-certificates ca-certificates 20241223 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coinor-cbc coinor-cbc 2.10.12+ds-1 install ok installed coinor-libcbc3.1:amd64 coinor-libcbc3.1 2.10.12+ds-1 install ok installed coinor-libcgl1:amd64 coinor-libcgl1 0.60.9+ds-1 install ok installed coinor-libclp1:amd64 coinor-libclp1 1.17.10+ds-1 install ok installed coinor-libcoinutils3v5:amd64 coinor-libcoinutils3v5 2.11.11+ds-2 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.10+ds-1+b1 install ok installed coreutils coreutils 9.5-1+b1 install ok installed cutadapt cutadapt 4.7-2 install ok installed dash dash 0.5.12-9 install ok installed dbus dbus 1.16.0-1 install ok installed dbus-bin dbus-bin 1.16.0-1 install ok installed dbus-daemon dbus-daemon 1.16.0-1 install ok installed dbus-session-bus-common dbus-session-bus-common 1.16.0-1 install ok installed dbus-system-bus-common dbus-system-bus-common 1.16.0-1 install ok installed dbus-user-session dbus-user-session 1.16.0-1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.40.0-4+b3 install ok installed dconf-service dconf-service 0.40.0-4+b3 install ok installed debconf debconf 1.5.88 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed default-jre default-jre 2:1.21-76 install ok installed default-jre-headless default-jre-headless 2:1.21-76 install ok installed diffutils diffutils 1:3.10-1 install ok installed docutils-common docutils-common 0.21.2+dfsg-2 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.2~rc1-2 install ok installed fastp fastp 0.23.4+dfsg-1 install ok installed fastqc fastqc 0.12.1+dfsg-4 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-1.1+b1 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1+b1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-lyx fonts-lyx 2.4.2.1-1 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-11 install ok installed git git 1:2.45.2-1.3 install ok installed git-man git-man 1:2.45.2-1.3 install ok installed grep grep 3.11-4 install ok installed gtk-update-icon-cache gtk-update-icon-cache 4.16.7+ds-1 install ok installed gzip gzip 1.12-1.2 install ok installed hicolor-icon-theme hicolor-icon-theme 0.18-1 install ok installed hisat2 hisat2 2.2.1-5+b1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed java-common java-common 0.76 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapparmor1:amd64 libapparmor1 3.1.7-1+b3 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.19 install ok installed libasan8:amd64 libasan8 14.2.0-11 install ok installed libasound2-data libasound2-data 1.2.12-1 install ok installed libasound2t64:amd64 libasound2t64 1.2.12-1+b1 install ok installed libatk-bridge2.0-0t64:amd64 libatk-bridge2.0-0t64 2.54.0-1 install ok installed libatk1.0-0t64:amd64 libatk1.0-0t64 2.54.0-1 install ok installed libatomic1:amd64 libatomic1 14.2.0-11 install ok installed libatspi2.0-0t64:amd64 libatspi2.0-0t64 2.54.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-15 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-15 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-15 install ok installed libbigwig0t64:amd64 libbigwig0t64 0.4.7+dfsg-3.1+b2 install ok installed libblas3:amd64 libblas3 3.12.0-4 install ok installed libblkid1:amd64 libblkid1 2.40.2-12 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost-filesystem1.83.0:amd64 libboost-filesystem1.83.0 1.83.0-4 install ok installed libboost-iostreams1.83.0:amd64 libboost-iostreams1.83.0 1.83.0-4 install ok installed libboost-program-options1.83.0:amd64 libboost-program-options1.83.0 1.83.0-4 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-4 install ok installed libc-dev-bin libc-dev-bin 2.40-4 install ok installed libc6:amd64 libc6 2.40-4 install ok installed libc6-dev:amd64 libc6-dev 2.40-4 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.18.2-2 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcloudproviders0:amd64 libcloudproviders0 0.3.6-1+b1 install ok installed libcolord2:amd64 libcolord2 1.4.7-1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2~rc1-2 install ok installed libcommons-codec-java libcommons-codec-java 1.17.1-1 install ok installed libcommons-compress-java libcommons-compress-java 1.27.1-2 install ok installed libcommons-io-java libcommons-io-java 2.17.0-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-3 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libcups2t64:amd64 libcups2t64 2.4.10-2+b1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.11.1-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.11.1-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.16.0-1 install ok installed libdconf1:amd64 libdconf1 0.40.0-4+b3 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.275 install ok installed libdeflate0:amd64 libdeflate0 1.22-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.123-1 install ok installed libdrm-common libdrm-common 2.4.123-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.123-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.123-1 install ok installed libdrm2:amd64 libdrm2 2.4.123-1 install ok installed libedit2:amd64 libedit2 3.1-20240808-1 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libepoxy0:amd64 libepoxy0 1.5.10-2 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2~rc1-2 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfindbin-libs-perl libfindbin-libs-perl 3.0.2-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1+b1 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgbm1:amd64 libgbm1 24.2.8-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-11 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-11 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.12+dfsg-1+b1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.12+dfsg-1 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-11 install ok installed libgif7:amd64 libgif7 5.2.2-1+b1 install ok installed libgl1:amd64 libgl1 1.7.0-1+b2 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 24.2.8-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 24.2.8-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.82.4-1 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1+b2 install ok installed libglx-mesa0:amd64 libglx-mesa0 24.2.8-1 install ok installed libglx0:amd64 libglx0 1.7.0-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-11 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libgtk-3-0t64:amd64 libgtk-3-0t64 3.24.43-4 install ok installed libgtk-3-common libgtk-3-common 3.24.43-4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.1.0-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhts3t64:amd64 libhts3t64 1.20+ds-2 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.1-1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.0+dfsg-2 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-11 install ok installed libhwloc15:amd64 libhwloc15 2.11.2-1 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu72:amd64 libicu72 72.1-5+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libisal2 libisal2 2.31.0-0.3 install ok installed libitm1:amd64 libitm1 14.2.0-11 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjbzip2-java libjbzip2-java 0.9.1-8 install ok installed libjemalloc2:amd64 libjemalloc2 5.3.0-2+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-datatables-extensions libjs-jquery-datatables-extensions 0.0+git20150910.28fd64e+dfsg-5 install ok installed libjs-jquery-metadata libjs-jquery-metadata 12-4 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 1:2.31.3+dfsg1-4 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1.1 install ok installed libjs-modernizr libjs-modernizr 3.13.0-0.1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.1.3-3 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libjson-perl libjson-perl 4.10000-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblapack3:amd64 liblapack3 3.12.0-4 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b2 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.19+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed libllvm19:amd64 libllvm19 1:19.1.6-1 install ok installed liblsan0:amd64 liblsan0 14.2.0-11 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.7-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.2-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.2-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.2-3 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmjson-java libmjson-java 1.4.0-3 install ok installed libmount1:amd64 libmount1 2.40.2-12 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.9+dfsg-7+b1 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.9+dfsg-2 install ok installed libncurses6:amd64 libncurses6 6.5-2+b1 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.6.0-2 install ok installed libngs-java:amd64 libngs-java 3.0.9+dfsg-7+b1 install ok installed libngs-jni:amd64 libngs-jni 3.0.9+dfsg-7+b1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.9.1-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.9.1-1 install ok installed libnlopt0:amd64 libnlopt0 2.7.1-6+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libnspr4:amd64 libnspr4 2:4.36-1 install ok installed libnss3:amd64 libnss3 2:3.106-1 install ok installed libnuma1:amd64 libnuma1 2.0.18-1+b1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam-systemd:amd64 libpam-systemd 257.1-4 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.55.0+ds-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.55.0+ds-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.55.0+ds-3 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-5 install ok installed libpcsclite1:amd64 libpcsclite1 2.3.1-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.0-8 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.44-3 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-6 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.8-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.8-3 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.8-3 install ok installed libpython3.12t64:amd64 libpython3.12t64 3.12.8-3 install ok installed libpython3.13:amd64 libpython3.13 3.13.1-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.1-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.1-2 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b2 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-11 install ok installed libraqm0:amd64 libraqm0 0.10.2-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librhino-java librhino-java 1.7.15-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsensors-config libsensors-config 1:3.6.0-10 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-10+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.4.0-0.1+b1 install ok installed libsm6:amd64 libsm6 2:1.2.4-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-12 install ok installed libsnappy-java libsnappy-java 1.1.10.7-1 install ok installed libsnappy-jni libsnappy-jni 1.1.10.7-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.1-1+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.2~rc1-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstaden-read14t64:amd64 libstaden-read14t64 1.15.0-1.1+b2 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-11 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-11 install ok installed libsystemd-shared:amd64 libsystemd-shared 257.1-4 install ok installed libsystemd0:amd64 libsystemd0 257.1-4 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtbb12:amd64 libtbb12 2021.12.0-1 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2021.12.0-1 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2021.12.0-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.15+dfsg-2 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libtk8.6:amd64 libtk8.6 8.6.15-1 install ok installed libtsan2:amd64 libtsan2 14.2.0-11 install ok installed libubsan1:amd64 libubsan1 14.2.0-11 install ok installed libudev1:amd64 libudev1 257.1-4 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-12 install ok installed libuv1t64:amd64 libuv1t64 1.48.0-7 install ok installed libvulkan1:amd64 libvulkan1 1.3.296.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.23.0-1+b1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.23.0-1+b1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.23.0-1+b1 install ok installed libwayland-server0:amd64 libwayland-server0 1.23.0-1+b1 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.4.0-0.1+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.4.0-0.1+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.17.0-2+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2+b1 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2+b1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2+b1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.6-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.2-1+b1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b3 install ok installed libxi6:amd64 libxi6 2:1.8.2-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b3 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.7.0-2 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b3 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1+b2 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b2 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed linux-libc-dev linux-libc-dev 6.12.6-1 install ok installed littler littler 0.3.20-2 install ok installed login login 1:4.16.0-2+really2.40.2-12 install ok installed login.defs login.defs 1:4.16.0-7 install ok installed logsave logsave 1.47.2~rc1-2 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed megadepth megadepth 1.2.0-4+b1 install ok installed mesa-libgallium:amd64 mesa-libgallium 24.2.8-1 install ok installed mount mount 2.40.2-12 install ok installed multiqc multiqc 1.21+dfsg-2 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.9+dfsg-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5 install ok installed openjdk-21-jre:amd64 openjdk-21-jre 21.0.6~6ea-1 install ok installed openjdk-21-jre-headless:amd64 openjdk-21-jre-headless 21.0.6~6ea-1 install ok installed openssl openssl 3.3.2-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed pandoc pandoc 3.1.11.1+ds-2 install ok installed pandoc-data pandoc-data 3.1.11.1-3 install ok installed passwd passwd 1:4.16.0-7 install ok installed perl perl 5.40.0-8 install ok installed perl-base perl-base 5.40.0-8 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.0-8 install ok installed pigx-rnaseq pigx-rnaseq 0.1.1-1 install ok installed pigz pigz 2.8-1 install ok installed procps procps 2:4.0.4-6 install ok installed python-babel-localedata python-babel-localedata 2.16.0-1 install ok installed python-matplotlib-data python-matplotlib-data 3.8.3-3 install ok installed python3 python3 3.12.8-1 install ok installed python3-alabaster python3-alabaster 0.7.16-0.1 install ok installed python3-attr python3-attr 24.2.0-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-babel python3-babel 2.16.0-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b6 install ok installed python3-certifi python3-certifi 2024.8.30+dfsg-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.0-1+b1 install ok installed python3-click python3-click 8.1.7-2 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-1 install ok installed python3-colormath python3-colormath 3.0.0-4 install ok installed python3-configargparse python3-configargparse 1.7-2 install ok installed python3-connection-pool python3-connection-pool 0.0.3-2 install ok installed python3-contourpy python3-contourpy 1.3.1-1 install ok installed python3-cutadapt python3-cutadapt 4.7-2+b2 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-5+b1 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-deeptools python3-deeptools 3.5.5+dfsg-1 install ok installed python3-deeptoolsintervals python3-deeptoolsintervals 0.1.9-3+b10 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-dnaio python3-dnaio 1.2.3-1 install ok installed python3-docutils python3-docutils 0.21.2+dfsg-2 install ok installed python3-dpath python3-dpath 2.2.0-1 install ok installed python3-fastjsonschema python3-fastjsonschema 2.20.0-1 install ok installed python3-fonttools python3-fonttools 4.55.0-3 install ok installed python3-fs python3-fs 2.4.16-5.1 install ok installed python3-git python3-git 3.1.37-3 install ok installed python3-gitdb python3-gitdb 4.0.11-1 install ok installed python3-htseq python3-htseq 2.0.9+dfsg-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-6 install ok installed python3-humanize python3-humanize 4.11.0-1 install ok installed python3-idna python3-idna 3.8-2 install ok installed python3-imagesize python3-imagesize 1.4.1-1 install ok installed python3-importlib-metadata python3-importlib-metadata 8.5.0-1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.3-1.1 install ok installed python3-jsonschema python3-jsonschema 4.19.2-5 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-2 install ok installed python3-jupyter-core python3-jupyter-core 5.7.2-5 install ok installed python3-kiwisolver python3-kiwisolver 1.4.7-2+b1 install ok installed python3-lxml:amd64 python3-lxml 5.3.0-1+b1 install ok installed python3-lz4 python3-lz4 4.4.0+dfsg-1 install ok installed python3-lzstring python3-lzstring 1.0.4-3 install ok installed python3-markdown python3-markdown 3.7-2 install ok installed python3-markdown-it python3-markdown-it 3.0.0-2 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b2 install ok installed python3-matplotlib python3-matplotlib 3.8.3-3+b1 install ok installed python3-mdurl python3-mdurl 0.1.2-1 install ok installed python3-minimal python3-minimal 3.12.8-1 install ok installed python3-more-itertools python3-more-itertools 10.5.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-nbformat python3-nbformat 5.9.1-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-12 install ok installed python3-numpydoc python3-numpydoc 1.8.0-1 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pil:amd64 python3-pil 10.4.0-1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.4.0-1+b1 install ok installed python3-pkg-resources python3-pkg-resources 75.6.0-1 install ok installed python3-plac python3-plac 1.4.3-2 install ok installed python3-platformdirs python3-platformdirs 4.3.6-1 install ok installed python3-plotly python3-plotly 5.20.0+dfsg-1 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-pulp python3-pulp 2.7.0+dfsg-4 install ok installed python3-py python3-py 1.11.0-2 install ok installed python3-py2bit python3-py2bit 0.3.2-1 install ok installed python3-pyaml-env python3-pyaml-env 1.2.1-2 install ok installed python3-pybigwig python3-pybigwig 0.3.23+dfsg-1+b1 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pysam python3-pysam 0.22.1+ds-2+b2 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-4 install ok installed python3-referencing python3-referencing 0.35.1-2 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-retry python3-retry 0.9.2-3 install ok installed python3-rich python3-rich 13.9.4-1 install ok installed python3-rich-click python3-rich-click 1.6.0-1 install ok installed python3-roman python3-roman 4.2-1 install ok installed python3-rpds-py python3-rpds-py 0.21.0-2 install ok installed python3-scipy python3-scipy 1.14.1-3 install ok installed python3-smart-open python3-smart-open 7.1.0-1 install ok installed python3-smmap python3-smmap 6.0.0-1 install ok installed python3-snowballstemmer python3-snowballstemmer 2.2.0-4 install ok installed python3-spectra python3-spectra 0.0.11-4 install ok installed python3-sphinx python3-sphinx 8.1.3-3 install ok installed python3-stopit python3-stopit 1.1.2-3 install ok installed python3-sympy python3-sympy 1.13.3-1 install ok installed python3-tabulate python3-tabulate 0.9.0-1 install ok installed python3-tenacity python3-tenacity 8.4.2+really8.4.1-2 install ok installed python3-throttler python3-throttler 1.2.2-2 install ok installed python3-tk:amd64 python3-tk 3.13.1-1 install ok installed python3-toposort python3-toposort 1.10-2 install ok installed python3-traitlets python3-traitlets 5.14.3+really5.14.3-1 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tz python3-tz 2024.2-1 install ok installed python3-ufolib2 python3-ufolib2 0.17.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b3 install ok installed python3-urllib3 python3-urllib3 2.2.3-4 install ok installed python3-wrapt python3-wrapt 1.15.0-4 install ok installed python3-xopen python3-xopen 1.7.0-2 install ok installed python3-yaml python3-yaml 6.0.2-1+b1 install ok installed python3-yte python3-yte 1.5.4-1 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3.12 python3.12 3.12.8-3 install ok installed python3.12-minimal python3.12-minimal 3.12.8-3 install ok installed python3.12-tk python3.12-tk 3.12.8-3 install ok installed python3.13-tk python3.13-tk 3.13.1-2 install ok installed r-base-core r-base-core 4.4.2-1 install ok installed r-bioc-biobase r-bioc-biobase 2.64.0-4 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.50.0-2 install ok installed r-bioc-biocio r-bioc-biocio 1.14.0+dfsg-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.38.0-2 install ok installed r-bioc-biostrings r-bioc-biostrings 2.72.1+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.30.1+dfsg-1 install ok installed r-bioc-deseq2 r-bioc-deseq2 1.44.0+dfsg-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.40.1+dfsg-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.12-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.40.0-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.56.2+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.38.1-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.16.0-2 install ok installed r-bioc-rhtslib r-bioc-rhtslib 3.0.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.20.0+dfsg-1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.64.0-1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.4.1+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.42.1+dfsg-2 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.4.8+dfsg-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.34.0+dfsg-1 install ok installed r-bioc-tximport r-bioc-tximport 1.32.0+dfsg-1 install ok installed r-bioc-ucsc.utils r-bioc-ucsc.utils 1.0.0+ds-2 install ok installed r-bioc-xvector r-bioc-xvector 0.44.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.50.0+dfsg-2 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-1 install ok installed r-cran-backports r-cran-backports 1.5.0-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bit r-cran-bit 4.0.5-1 install ok installed r-cran-bit64 r-cran-bit64 4.0.5-1 install ok installed r-cran-bitops r-cran-bitops 1.0-8-1 install ok installed r-cran-boot r-cran-boot 1.3-31-1 install ok installed r-cran-broom r-cran-broom 1.0.7+dfsg-1 install ok installed r-cran-bslib r-cran-bslib 0.7.0+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-1 install ok installed r-cran-car r-cran-car 3.1-3-1 install ok installed r-cran-cardata r-cran-cardata 3.0.5-1 install ok installed r-cran-caret r-cran-caret 6.0-94+dfsg-1 install ok installed r-cran-cellranger r-cran-cellranger 1.1.0-3 install ok installed r-cran-class r-cran-class 7.3-22-2 install ok installed r-cran-cli r-cran-cli 3.6.3-1 install ok installed r-cran-clipr r-cran-clipr 0.8.0-1 install ok installed r-cran-clock r-cran-clock 0.7.1-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-1+dfsg-1 install ok installed r-cran-colourpicker r-cran-colourpicker 1.3.0+dfsg-1 install ok installed r-cran-commonmark r-cran-commonmark 1.9.2-2 install ok installed r-cran-conquer r-cran-conquer 1.3.3-1 install ok installed r-cran-corrplot r-cran-corrplot 0.94-1 install ok installed r-cran-cowplot r-cran-cowplot 1.1.3+dfsg-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.0-1 install ok installed r-cran-crayon r-cran-crayon 1.5.2-1 install ok installed r-cran-crosstalk r-cran-crosstalk 1.2.1+dfsg-1 install ok installed r-cran-curl r-cran-curl 5.2.3+dfsg-1 install ok installed r-cran-data.table r-cran-data.table 1.16.2+dfsg-1 install ok installed r-cran-deriv r-cran-deriv 4.1.6-1 install ok installed r-cran-diagram r-cran-diagram 1.6.5-2 install ok installed r-cran-digest r-cran-digest 0.6.37-1 install ok installed r-cran-doby r-cran-doby 4.6.24-1 install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-4 install ok installed r-cran-dt r-cran-dt 0.33+dfsg-1 install ok installed r-cran-e1071 r-cran-e1071 1.7-16-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.2-2 install ok installed r-cran-evaluate r-cran-evaluate 1.0.0-1 install ok installed r-cran-fansi r-cran-fansi 1.0.5-1 install ok installed r-cran-farver r-cran-farver 2.1.2-1 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-1 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.2-1 install ok installed r-cran-forcats r-cran-forcats 1.0.0-1 install ok installed r-cran-foreach r-cran-foreach 1.5.2-1 install ok installed r-cran-foreign r-cran-foreign 0.8.87-1 install ok installed r-cran-formatr r-cran-formatr 1.14-2 install ok installed r-cran-formula r-cran-formula 1.2-5-1 install ok installed r-cran-fs r-cran-fs 1.6.4+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-future r-cran-future 1.34.0+dfsg-1 install ok installed r-cran-future.apply r-cran-future.apply 1.11.2+dfsg-1 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.5.1+dfsg-1 install ok installed r-cran-ggpubr r-cran-ggpubr 0.6.0-1 install ok installed r-cran-ggrepel r-cran-ggrepel 0.9.5-2 install ok installed r-cran-ggsci r-cran-ggsci 3.2.0-1 install ok installed r-cran-ggsignif r-cran-ggsignif 0.6.4-1 install ok installed r-cran-globals r-cran-globals 0.16.3-1 install ok installed r-cran-glue r-cran-glue 1.8.0-1 install ok installed r-cran-gower r-cran-gower 1.0.1-1 install ok installed r-cran-gprofiler2 r-cran-gprofiler2 0.2.3+dfsg-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-3 install ok installed r-cran-gtable r-cran-gtable 0.3.6+dfsg-1 install ok installed r-cran-hardhat r-cran-hardhat 1.4.0+dfsg-1 install ok installed r-cran-haven r-cran-haven 2.5.4-1 install ok installed r-cran-highr r-cran-highr 0.11+dfsg-1 install ok installed r-cran-hms r-cran-hms 1.1.3-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.8.1-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.6.15+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.7+dfsg-1 install ok installed r-cran-ipred r-cran-ipred 0.9-15-1 install ok installed r-cran-isoband r-cran-isoband 0.2.7-1 install ok installed r-cran-iterators r-cran-iterators 1.0.14-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-4 install ok installed r-cran-jsonlite r-cran-jsonlite 1.8.9+dfsg-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-24-1 install ok installed r-cran-knitr r-cran-knitr 1.49+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.3-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-later r-cran-later 1.3.2+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.22-6-1 install ok installed r-cran-lava r-cran-lava 1.7.3+dfsg-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.2-1+b1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-listenv r-cran-listenv 0.9.1+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.20-2 install ok installed r-cran-lme4 r-cran-lme4 1.1-35.5-1 install ok installed r-cran-locfit r-cran-locfit 1.5-9.10-1 install ok installed r-cran-lubridate r-cran-lubridate 1.9.3+dfsg-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-61-1 install ok installed r-cran-matrix r-cran-matrix 1.7-1-1 install ok installed r-cran-matrixmodels r-cran-matrixmodels 0.5-3-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.4.1-1 install ok installed r-cran-memoise r-cran-memoise 2.0.1-1 install ok installed r-cran-mgcv r-cran-mgcv 1.9-1-1 install ok installed r-cran-microbenchmark r-cran-microbenchmark 1.5.0-1 install ok installed r-cran-mime r-cran-mime 0.12-2 install ok installed r-cran-miniui r-cran-miniui 0.1.1.1-3 install ok installed r-cran-minqa r-cran-minqa 1.2.8-1 install ok installed r-cran-modelmetrics r-cran-modelmetrics 1.2.2.2-1+b1 install ok installed r-cran-modelr r-cran-modelr 0.1.11-1 install ok installed r-cran-munsell r-cran-munsell 0.5.1-1 install ok installed r-cran-nlme r-cran-nlme 3.1.166-1 install ok installed r-cran-nloptr r-cran-nloptr 2.1.1-1 install ok installed r-cran-nnet r-cran-nnet 7.3-19-2 install ok installed r-cran-numderiv r-cran-numderiv 2016.8-1.1-3 install ok installed r-cran-openssl r-cran-openssl 2.2.0+dfsg-1 install ok installed r-cran-openxlsx r-cran-openxlsx 4.2.7.1-1 install ok installed r-cran-parallelly r-cran-parallelly 1.38.0-1 install ok installed r-cran-pbkrtest r-cran-pbkrtest 0.5.3-1 install ok installed r-cran-pheatmap r-cran-pheatmap 1.0.12-2 install ok installed r-cran-pillar r-cran-pillar 1.9.0+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-plotly r-cran-plotly 4.10.4+dfsg-2 install ok installed r-cran-plyr r-cran-plyr 1.8.9-1 install ok installed r-cran-polynom r-cran-polynom 1.4-1+dfsg-1 install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-1 install ok installed r-cran-proc r-cran-proc 1.18.5-1 install ok installed r-cran-prodlim r-cran-prodlim 2024.06.25-1 install ok installed r-cran-progress r-cran-progress 1.2.3-1 install ok installed r-cran-progressr r-cran-progressr 0.14.0-1 install ok installed r-cran-promises r-cran-promises 1.3.0+dfsg-1 install ok installed r-cran-proxy r-cran-proxy 0.4-27-1 install ok installed r-cran-purrr r-cran-purrr 1.0.2-1 install ok installed r-cran-quantreg r-cran-quantreg 5.99.1-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.8.2-1 install ok installed r-cran-r.oo r-cran-r.oo 1.26.0-1 install ok installed r-cran-r.utils r-cran-r.utils 2.12.3-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.3-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.13-1-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 14.2.2-1-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.4.0.2-1 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.16+dfsg-1 install ok installed r-cran-readr r-cran-readr 2.1.5-1 install ok installed r-cran-readxl r-cran-readxl 1.4.3-1 install ok installed r-cran-recipes r-cran-recipes 1.1.0+dfsg-1 install ok installed r-cran-rematch r-cran-rematch 2.0.0-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-restfulr r-cran-restfulr 0.0.15-1 install ok installed r-cran-rio r-cran-rio 1.2.3-1 install ok installed r-cran-rjson r-cran-rjson 0.2.23-1 install ok installed r-cran-rlang r-cran-rlang 1.1.4-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.28+dfsg-1 install ok installed r-cran-rpart r-cran-rpart 4.1.23-1 install ok installed r-cran-rstatix r-cran-rstatix 0.7.2-1 install ok installed r-cran-sass r-cran-sass 0.4.9+dfsg-1 install ok installed r-cran-scales r-cran-scales 1.3.0-1 install ok installed r-cran-shape r-cran-shape 1.4.6.1-1 install ok installed r-cran-shiny r-cran-shiny 1.9.1+dfsg-1 install ok installed r-cran-shinyjs r-cran-shinyjs 2.1.0-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-1-1 install ok installed r-cran-sparsem r-cran-sparsem 1.84-2-1+b1 install ok installed r-cran-squarem r-cran-squarem 2021.1-1 install ok installed r-cran-statmod r-cran-statmod 1.5.0-1 install ok installed r-cran-stringi r-cran-stringi 1.8.4-1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-survival r-cran-survival 3.7-0-1 install ok installed r-cran-sys r-cran-sys 3.4.3-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-1 install ok installed r-cran-timechange r-cran-timechange 0.3.0-1 install ok installed r-cran-timedate r-cran-timedate 4041.110-1 install ok installed r-cran-tinytex r-cran-tinytex 0.53-1 install ok installed r-cran-tzdb r-cran-tzdb 0.4.0-2 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2 install ok installed r-cran-vroom r-cran-vroom 1.6.5-1 install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1 install ok installed r-cran-writexl r-cran-writexl 1.5.1-1 install ok installed r-cran-xfun r-cran-xfun 0.49+dfsg-1 install ok installed r-cran-xml r-cran-xml 3.99-0.17-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2 install ok installed r-cran-yaml r-cran-yaml 2.3.10-1 install ok installed r-cran-zip r-cran-zip 2.3.1-1 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed salmon salmon 1.10.2+ds1-1+b4 install ok installed samtools samtools 1.20-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sgml-base sgml-base 1.31 install ok installed shared-mime-info shared-mime-info 2.4-5+b1 install ok installed snakemake snakemake 7.32.4-6 install ok installed sphinx-common sphinx-common 8.1.3-3 install ok installed sqv sqv 1.2.1-4 install ok installed systemd systemd 257.1-4 install ok installed systemd-sysv systemd-sysv 257.1-4 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed trim-galore trim-galore 0.6.10-1 install ok installed tzdata tzdata 2024b-4 install ok installed ucf ucf 3.0046 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-12 install ok installed x11-common x11-common 1:7.7+23.1 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xkb-data xkb-data 2.42-1 install ok installed xml-core xml-core 0.19 install ok installed zip zip 3.0-14 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 1m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisal2', 'libitm1:amd64', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 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'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-cellranger', 'r-cran-class', 'r-cran-cli', 'r-cran-clipr', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-forcats', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-haven', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-openxlsx', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-readxl', 'r-cran-recipes', 'r-cran-rematch', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rio', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-vroom', 'r-cran-withr', 'r-cran-writexl', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zip', 'readline-common', 'rpcsvc-proto', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'pigx-rnaseq'] 1m55.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser adwaita-icon-theme at-spi2-common blt ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cutadapt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless docutils-common fastp fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx fonts-mathjax git git-man gtk-update-icon-cache hicolor-icon-theme hisat2 java-common javascript-common libapache-pom-java libapparmor1 libasan8 libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libbigwig0t64 libblas3 libboost-dev libboost-filesystem1.83.0 libboost-iostreams1.83.0 libboost-program-options1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin 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python3-htseq python3-humanfriendly python3-humanize python3-idna python3-imagesize python3-importlib-metadata python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-networkx python3-numpy python3-numpydoc python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-plac python3-platformdirs python3-plotly python3-psutil python3-pulp python3-py python3-py2bit python3-pyaml-env python3-pybigwig python3-pygments python3-pyparsing python3-pysam python3-ratelimiter python3-referencing python3-requests python3-retry python3-rich python3-rich-click python3-roman python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-stopit python3-sympy python3-tabulate python3-tenacity python3-throttler python3-tk python3-toposort python3-traitlets python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-yte python3-zipp python3.12 python3.12-minimal python3.12-tk python3.13-tk r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-tximport r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-boot r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata r-cran-caret r-cran-cellranger r-cran-class r-cran-cli r-cran-clipr r-cran-clock r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deriv r-cran-diagram r-cran-digest r-cran-doby r-cran-dplyr r-cran-dt r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-forcats r-cran-foreach r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-ggpubr r-cran-ggrepel r-cran-ggsci r-cran-ggsignif r-cran-globals r-cran-glue r-cran-gower r-cran-gprofiler2 r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-haven r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4 r-cran-locfit r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime r-cran-miniui r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-openxlsx r-cran-parallelly r-cran-pbkrtest r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-polynom r-cran-prettyunits r-cran-proc r-cran-prodlim r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-recipes r-cran-rematch r-cran-reshape2 r-cran-restfulr r-cran-rio r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rstatix r-cran-sass r-cran-scales r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-sparsem r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-withr r-cran-writexl r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zip readline-common rpcsvc-proto salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common systemd systemd-sysv tk8.6-blt2.5 trim-galore ucf unicode-data unzip x11-common xdg-utils xkb-data xml-core zip zlib1g-dev 0 upgraded, 0 newly installed, 660 to remove and 0 not upgraded. After this operation, 2324 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 96074 files and directories currently installed.) Removing pigx-rnaseq (0.1.1-1) ... Removing fastqc (0.12.1+dfsg-4) ... Removing default-jre (2:1.21-76) ... Removing openjdk-21-jre:amd64 (21.0.6~6ea-1) ... Removing libgtk-3-0t64:amd64 (3.24.43-4) ... Removing libgtk-3-common (3.24.43-4) ... Removing dconf-gsettings-backend:amd64 (0.40.0-4+b3) ... Removing dconf-service (0.40.0-4+b3) ... Removing dbus-user-session (1.16.0-1) ... Removing libpam-systemd:amd64 (257.1-4) ... Removing dbus (1.16.0-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-system-bus-common (1.16.0-1) ... Removing adduser (3.137) ... Removing adwaita-icon-theme (47.0-2) ... Removing libatk-bridge2.0-0t64:amd64 (2.54.0-1) ... Removing libatk1.0-0t64:amd64 (2.54.0-1) ... Removing at-spi2-common (2.54.0-1) ... Removing multiqc (1.21+dfsg-2) ... Removing python3-deeptools (3.5.5+dfsg-1) ... Removing python3-matplotlib (3.8.3-3+b1) ... Removing python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Removing python3-pil:amd64 (10.4.0-1+b1) ... Removing python3-tk:amd64 (3.13.1-1) ... Removing blt (2.5.3+dfsg-7) ... Removing snakemake (7.32.4-6) ... Removing python3-numpydoc (1.8.0-1) ... Removing python3-sphinx (8.1.3-3) ... Removing default-jre-headless (2:1.21-76) ... 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Removing libz3-4:amd64 (4.13.3-1) ... Removing linux-libc-dev (6.12.6-1) ... Removing littler (0.3.20-2) ... Removing ncbi-vdb-data (3.0.9+dfsg-2) ... Removing pandoc-data (3.1.11.1-3) ... Removing python3-cutadapt (4.7-2+b2) ... Removing python3-dnaio (1.2.3-1) ... Removing python3-xopen (1.7.0-2) ... Removing pigz (2.8-1) ... Removing python3-babel (2.16.0-1) ... Removing python-babel-localedata (2.16.0-1) ... Removing python3-alabaster (0.7.16-0.1) ... Removing python3-stopit (1.1.2-3) ... Removing python3-retry (0.9.2-3) ... Removing python3-py (1.11.0-2) ... Removing python3-click (8.1.7-2) ... Removing python3-colorama (0.4.6-4) ... Removing python3-configargparse (1.7-2) ... Removing python3-connection-pool (0.0.3-2) ... Removing python3-contourpy (1.3.1-1) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-defusedxml (0.7.1-3) ... Removing python3-dpath (2.2.0-1) ... Removing python3-fastjsonschema (2.20.0-1) ... 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Removing python3-snowballstemmer (2.2.0-4) ... Removing python3-tabulate (0.9.0-1) ... Removing python3-tenacity (8.4.2+really8.4.1-2) ... Removing python3-throttler (1.2.2-2) ... Removing python3-toposort (1.10-2) ... Removing python3-traitlets (5.14.3+really5.14.3-1) ... Removing python3-wrapt (1.15.0-4) ... Removing python3-zipp (3.21.0-1) ... Removing r-bioc-biobase (2.64.0-4) ... Removing r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Removing r-bioc-ucsc.utils (1.0.0+ds-2) ... Removing r-bioc-iranges (2.38.1-1) ... Removing r-bioc-tximport (1.32.0+dfsg-1) ... Removing r-bioc-biocio (1.14.0+dfsg-1) ... Removing r-bioc-genomeinfodbdata (1.2.12-1) ... Removing r-bioc-matrixgenerics (1.16.0-2) ... Removing r-cran-httr (1.4.7+dfsg-1) ... Removing r-cran-openssl (2.2.0+dfsg-1) ... Removing r-cran-askpass (1.2.1-1) ... Removing r-cran-backports (1.5.0-2) ... Removing r-cran-miniui (0.1.1.1-3) ... Removing r-cran-haven (2.5.4-1) ... Removing r-cran-readr (2.1.5-1) ... Removing r-cran-vroom (1.6.5-1) ... Removing r-cran-bit64 (4.0.5-1) ... Removing r-cran-bit (4.0.5-1) ... Removing r-cran-rcurl (1.98-1.16+dfsg-1) ... Removing r-cran-bitops (1.0-8-1) ... Removing r-cran-boot (1.3-31-1) ... Removing r-cran-cardata (3.0.5-1) ... Removing r-cran-readxl (1.4.3-1) ... Removing r-cran-cellranger (1.1.0-3) ... Removing r-cran-e1071 (1.7-16-1) ... Removing r-cran-class (7.3-22-2) ... Removing r-cran-dplyr (1.1.4-4) ... Removing r-cran-tidyselect (1.2.1+dfsg-1) ... Removing r-cran-hardhat (1.4.0+dfsg-1) ... Removing r-cran-pheatmap (1.0.12-2) ... Removing r-cran-clipr (0.8.0-1) ... Removing r-cran-clock (0.7.1-1) ... Removing r-cran-lava (1.7.3+dfsg-1) ... Removing r-cran-future.apply (1.11.2+dfsg-1) ... Removing r-cran-future (1.34.0+dfsg-1) ... Removing r-cran-globals (0.16.3-1) ... Removing r-cran-foreach (1.5.2-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-corrplot (0.94-1) ... Removing r-cran-cowplot (1.1.3+dfsg-1) ... Removing r-cran-tzdb (0.4.0-2) ... Removing r-cran-lubridate (1.9.3+dfsg-1) ... Removing r-cran-timechange (0.3.0-1) ... Removing r-cran-cpp11 (0.5.0-1) ... Removing r-cran-progress (1.2.3-1) ... Removing r-cran-deriv (4.1.6-1) ... Removing r-cran-diagram (1.6.5-2) ... Removing r-cran-progressr (0.14.0-1) ... Removing r-cran-forcats (1.0.0-1) ... Removing r-cran-ellipsis (0.3.2-2) ... Removing r-cran-evaluate (1.0.0-1) ... Removing r-cran-foreign (0.8.87-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-2) ... Removing r-cran-formula (1.2-5-1) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-ggrepel (0.9.5-2) ... Removing r-cran-ggsci (3.2.0-1) ... Removing r-cran-purrr (1.0.2-1) ... Removing r-cran-gridextra (2.3-3) ... Removing r-cran-hms (1.1.3-1) ... Removing r-cran-iterators (1.0.14-1) ... Removing r-cran-kernsmooth (2.23-24-1) ... Removing r-cran-locfit (1.5-9.10-1) ... Removing r-cran-lazyeval (0.2.2-1+b1) ... Removing r-cran-listenv (0.9.1+dfsg-1) ... Removing r-cran-matrixmodels (0.5-3-1) ... Removing r-cran-matrixstats (1.4.1-1) ... Removing r-cran-microbenchmark (1.5.0-1) ... Removing r-cran-minqa (1.2.8-1) ... Removing r-cran-nnet (7.3-19-2) ... Removing r-cran-numderiv (2016.8-1.1-3) ... Removing r-cran-parallelly (1.38.0-1) ... Removing r-cran-proc (1.18.5-1) ... Removing r-cran-plyr (1.8.9-1) ... Removing r-cran-polynom (1.4-1+dfsg-1) ... Removing r-cran-prettyunits (1.2.0-1) ... Removing r-cran-proxy (0.4-27-1) ... Removing r-cran-r.utils (2.12.3-1) ... Removing r-cran-r.oo (1.26.0-1) ... Removing r-cran-r.methodss3 (1.8.2-1) ... Removing r-cran-rematch (2.0.0-1) ... Removing r-cran-rjson (0.2.23-1) ... Removing r-cran-shape (1.4.6.1-1) ... Removing r-cran-sparsem (1.84-2-1+b1) ... Removing r-cran-squarem (2021.1-1) ... Removing r-cran-statmod (1.5.0-1) ... Removing r-cran-sys (3.4.3-1) ... Removing r-cran-timedate (4041.110-1) ... Removing r-cran-tinytex (0.53-1) ... Removing r-cran-writexl (1.5.1-1) ... Removing r-cran-xfun (0.49+dfsg-1) ... Removing r-cran-yaml (2.3.10-1) ... Removing r-cran-zip (2.3.1-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xkb-data (2.42-1) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing r-cran-survival (3.7-0-1) ... Removing r-cran-shiny (1.9.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing r-cran-bslib (0.7.0+dfsg-1) ... Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (11+nmu1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Removing r-cran-ggplot2 (3.5.1+dfsg-1) ... Removing r-cran-mgcv (1.9-1-1) ... Removing r-cran-curl (5.2.3+dfsg-1) ... Removing libhts3t64:amd64 (1.20+ds-2) ... Removing libcurl3t64-gnutls:amd64 (8.11.1-1) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libhtscodecs2:amd64 (1.6.1-1) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing libjs-highlight.js (9.18.5+dfsg1-2) ... Removing r-cran-jquerylib (0.1.4+dfsg-4) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-1.1) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing libnghttp3-9:amd64 (1.6.0-2) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Removing libngtcp2-16:amd64 (1.9.1-1) ... Removing r-cran-httpuv (1.6.15+dfsg-1) ... Removing r-cran-sass (0.4.9+dfsg-1) ... Removing r-cran-fs (1.6.4+dfsg-1) ... Removing libuv1t64:amd64 (1.48.0-7) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5) ... Removing python3-certifi (2024.8.30+dfsg-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.4.0-1+b1) ... Removing python3-idna (3.8-2) ... Removing python3-urllib3 (2.2.3-4) ... Removing r-bioc-s4vectors (0.42.1+dfsg-2) ... Removing r-bioc-biocgenerics (0.50.0-2) ... Removing r-cran-fontawesome (0.5.2-1) ... Removing r-cran-htmltools (0.5.8.1-1) ... Removing r-cran-base64enc (0.1-3-3) ... Removing r-cran-memoise (2.0.1-1) ... Removing r-cran-cachem (1.1.0-1) ... Removing r-cran-tibble (3.2.1+dfsg-2) ... Removing r-cran-scales (1.3.0-1) ... Removing r-cran-munsell (0.5.1-1) ... Removing r-cran-colorspace (2.1-1+dfsg-1) ... Removing r-cran-commonmark (1.9.2-2) ... Removing r-cran-crayon (1.5.2-1) ... Removing r-cran-digest (0.6.37-1) ... Removing r-cran-pillar (1.9.0+dfsg-1) ... Removing r-cran-fansi (1.0.5-1) ... Removing r-cran-farver (2.1.2-1) ... Removing r-cran-promises (1.3.0+dfsg-1) ... Removing r-cran-fastmap (1.2.0-1) ... Removing r-cran-gtable (0.3.6+dfsg-1) ... Removing r-cran-isoband (0.2.7-1) ... Removing r-cran-jsonlite (1.8.9+dfsg-1) ... Removing r-cran-labeling (0.4.3-1) ... Removing r-cran-later (1.3.2+dfsg-1) ... Removing r-cran-nlme (3.1.166-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-61-1) ... Removing r-cran-mime (0.12-2) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rappdirs (0.3.3-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-cran-sourcetools (0.1.7-1-1) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-viridislite (0.4.2-2) ... Removing r-cran-withr (3.0.2+dfsg-1) ... Removing r-cran-xtable (1:1.8-4-2) ... Removing r-cran-matrix (1.7-1-1) ... Removing r-cran-rcpp (1.0.13-1-1) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.8.0-1) ... Removing r-cran-lattice (0.22-6-1) ... Removing r-cran-littler (0.3.20-2) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-rlang (1.1.4-1) ... Removing r-cran-cli (3.6.3-1) ... Removing r-base-core (4.4.2-1) ... Removing libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... Removing libpango-1.0-0:amd64 (1.55.0+ds-3) ... Removing fontconfig (2.15.0-1.1+b1) ... Removing libtk8.6:amd64 (8.6.15-1) ... Removing libxft2:amd64 (2.3.6-1+b3) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing libfontconfig1:amd64 (2.15.0-1.1+b1) ... Removing fontconfig-config (2.15.0-1.1+b1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libharfbuzz0b:amd64 (10.1.0-1) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libcurl4t64:amd64 (8.11.1-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libtiff6:amd64 (4.5.1+git230720-5) ... Removing libdeflate0:amd64 (1.22-1) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing ucf (3.0046) ... Removing perl (5.40.0-8) ... Removing libperl5.40:amd64 (5.40.0-8) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libldap-2.5-0:amd64 (2.5.19+dfsg-1) ... Removing libgnutls30t64:amd64 (3.8.8-2) ... Removing libgomp1:amd64 (14.2.0-11) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b1) ... Removing libsm6:amd64 (2:1.2.4-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.7-2+b1) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing procps (2:4.0.4-6) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libpaper-utils (2.2.5-0.3) ... Removing libpaper2:amd64 (2.2.5-0.3) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.44-3) ... Removing libproc2-0:amd64 (2:4.0.4-6) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libwebp7:amd64 (1.4.0-0.1+b1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.19.0-3+b3) ... Removing libtcl8.6:amd64 (8.6.15+dfsg-2) ... Removing libthai-data (0.1.29-2) ... Removing libunistring5:amd64 (1.3-1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxss1:amd64 (1:1.2.3-1+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b3) ... Removing perl-modules-5.40 (5.40.0-8) ... Removing sensible-utils (0.0.24) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-14) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libglib2.0-0t64:amd64 (2.82.4-1) ... Removing libatomic1:amd64 (14.2.0-11) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing openssl (3.3.2-2) ... Removing python3-ufolib2 (0.17.0+dfsg1-1) ... Removing python3-attr (24.2.0-1) ... Removing python3-fonttools (4.55.0-3) ... Removing python3-scipy (1.14.1-3) ... Removing python3-numpy (1:1.26.4+ds-12) ... Removing python3-lxml:amd64 (5.3.0-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1.1+b1) ... Removing libgcrypt20:amd64 (1.11.0-7) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Removing liblapack3:amd64 (3.12.0-4) ... Removing libgfortran5:amd64 (14.2.0-11) ... Removing libgpg-error0:amd64 (1.51-3) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libicu72:amd64 (72.1-5+b1) ... Removing python3-brotli (1.1.0-2+b6) ... Removing python3-decorator (5.1.1-5) ... Removing python3-fs (2.4.16-5.1) ... Removing python3-lz4 (4.4.0+dfsg-1) ... Removing python3-sympy (1.13.3-1) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-platformdirs (4.3.6-1) ... Removing python3-tz (2024.2-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b3) ... Removing unicode-data (15.1.0-1) ... Removing libblas3:amd64 (3.12.0-4) ... Removing python3-pkg-resources (75.6.0-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.1-1) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.5.0-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing python3 (3.12.8-1) ... Removing python3.12 (3.12.8-3) ... Removing libpython3-stdlib:amd64 (3.12.8-1) ... Removing python3-minimal (3.12.8-1) ... Removing python3.12-minimal (3.12.8-3) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libpython3.12-stdlib:amd64 (3.12.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libpython3.12-minimal:amd64 (3.12.8-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-6) ... Removing libffi8:amd64 (3.4.6-1) ... Processing triggers for libc-bin (2.40-4) ... 1m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisal2', 'libitm1:amd64', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.13:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstaden-read14t64:amd64', 'libstdc++-14-dev:amd64', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'littler', 'media-types', 'megadepth', 'mesa-libgallium:amd64', 'multiqc', 'ncbi-vdb-data', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openjdk-21-jre:amd64', 'openjdk-21-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'pigz', 'procps', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-defusedxml', 'python3-dnaio', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-fonttools', 'python3-fs', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-plac', 'python3-platformdirs', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-py2bit', 'python3-pyaml-env', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-ratelimiter', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-rich', 'python3-rich-click', 'python3-roman', 'python3-rpds-py', 'python3-scipy', 'python3-smart-open', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-stopit', 'python3-sympy', 'python3-tabulate', 'python3-tenacity', 'python3-throttler', 'python3-tk:amd64', 'python3-toposort', 'python3-traitlets', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yte', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'python3.12-tk', 'python3.13-tk', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-cellranger', 'r-cran-class', 'r-cran-cli', 'r-cran-clipr', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-forcats', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-haven', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-openxlsx', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-readxl', 'r-cran-recipes', 'r-cran-rematch', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rio', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-vroom', 'r-cran-withr', 'r-cran-writexl', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zip', 'readline-common', 'rpcsvc-proto', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'pigx-rnaseq'] 1m55.8s INFO: Running scripts post_remove 1m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_remove_exceptions'] 1m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_remove_exceptions'] 1m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisal2', 'libitm1:amd64', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.13:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstaden-read14t64:amd64', 'libstdc++-14-dev:amd64', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'littler', 'media-types', 'megadepth', 'mesa-libgallium:amd64', 'multiqc', 'ncbi-vdb-data', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openjdk-21-jre:amd64', 'openjdk-21-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'pigz', 'procps', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-defusedxml', 'python3-dnaio', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-fonttools', 'python3-fs', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-plac', 'python3-platformdirs', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-py2bit', 'python3-pyaml-env', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-ratelimiter', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-rich', 'python3-rich-click', 'python3-roman', 'python3-rpds-py', 'python3-scipy', 'python3-smart-open', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-stopit', 'python3-sympy', 'python3-tabulate', 'python3-tenacity', 'python3-throttler', 'python3-tk:amd64', 'python3-toposort', 'python3-traitlets', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yte', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'python3.12-tk', 'python3.13-tk', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-cellranger', 'r-cran-class', 'r-cran-cli', 'r-cran-clipr', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-forcats', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-haven', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-openxlsx', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-readxl', 'r-cran-recipes', 'r-cran-rematch', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rio', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-vroom', 'r-cran-withr', 'r-cran-writexl', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zip', 'readline-common', 'rpcsvc-proto', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 1m56.2s DUMP: (Reading database ... 5177 files and directories currently installed.) Purging configuration files for adduser (3.137) ... Purging configuration files for adwaita-icon-theme (47.0-2) ... dpkg: warning: ignoring request to remove at-spi2-common which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. 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which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-retry which isn't installed dpkg: warning: ignoring request to remove python3-rich which isn't installed dpkg: warning: ignoring request to remove python3-rich-click which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-smart-open which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-snowballstemmer which isn't installed dpkg: warning: ignoring request to remove python3-spectra which isn't installed dpkg: warning: ignoring request to remove python3-sphinx which isn't installed dpkg: warning: ignoring request to remove python3-stopit which isn't installed Purging configuration files for python3-sympy (1.13.3-1) ... dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-tenacity which isn't installed dpkg: warning: ignoring request to remove python3-throttler which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-xopen which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yte which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.8-3) ... dpkg: warning: ignoring request to remove python3.12-tk which isn't installed dpkg: warning: ignoring request to remove python3.13-tk which isn't installed Purging configuration files for r-base-core (4.4.2-1) ... dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocio which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-deseq2 which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-tximport which isn't installed dpkg: warning: ignoring request to remove r-bioc-ucsc.utils which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-broom which isn't 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r-cran-colourpicker which isn't installed dpkg: warning: ignoring request to remove r-cran-commonmark which isn't installed dpkg: warning: ignoring request to remove r-cran-conquer which isn't installed dpkg: warning: ignoring request to remove r-cran-corrplot which isn't installed dpkg: warning: ignoring request to remove r-cran-cowplot which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-crosstalk which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-deriv which isn't installed dpkg: warning: ignoring request to remove r-cran-diagram which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-doby which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-dt which isn't installed dpkg: warning: ignoring request to remove r-cran-e1071 which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed dpkg: warning: ignoring request to remove r-cran-fontawesome which isn't installed dpkg: warning: ignoring request to remove r-cran-forcats which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-fs which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-future which isn't installed dpkg: warning: ignoring request to remove r-cran-future.apply which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-ggpubr which isn't installed dpkg: warning: ignoring request to remove r-cran-ggrepel which isn't installed dpkg: warning: ignoring request to remove r-cran-ggsci which isn't installed dpkg: warning: ignoring request to remove r-cran-ggsignif which isn't installed dpkg: warning: ignoring request to remove r-cran-globals which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gower which isn't installed dpkg: warning: ignoring request to remove r-cran-gprofiler2 which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hardhat which isn't installed dpkg: warning: ignoring request to remove r-cran-haven which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-ipred which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-jquerylib which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lava which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-listenv which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-lme4 which isn't installed dpkg: warning: ignoring request to remove r-cran-locfit which isn't installed dpkg: warning: ignoring request to remove r-cran-lubridate which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixmodels which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-microbenchmark which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-miniui which isn't installed dpkg: warning: ignoring request to remove r-cran-minqa which isn't installed dpkg: warning: ignoring request to remove r-cran-modelmetrics which isn't installed dpkg: warning: ignoring request to remove r-cran-modelr which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nloptr which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-numderiv which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-openxlsx which isn't installed dpkg: warning: ignoring request to remove r-cran-parallelly which isn't installed dpkg: warning: ignoring request to remove r-cran-pbkrtest which isn't installed dpkg: warning: ignoring request to remove r-cran-pheatmap which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plotly which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-polynom which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-proc which isn't installed dpkg: warning: ignoring request to remove r-cran-prodlim which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-progressr which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-proxy which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-quantreg which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-r.oo which isn't installed dpkg: warning: ignoring request to remove r-cran-r.utils which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed dpkg: warning: ignoring request to remove r-cran-rcurl which isn't installed dpkg: warning: ignoring request to remove r-cran-readr which isn't installed dpkg: warning: ignoring request to remove r-cran-readxl which isn't installed dpkg: warning: ignoring request to remove r-cran-recipes which isn't installed dpkg: warning: ignoring request to remove r-cran-rematch which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-restfulr which isn't installed dpkg: warning: ignoring request to remove r-cran-rio which isn't installed dpkg: warning: ignoring request to remove r-cran-rjson which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rstatix which isn't installed dpkg: warning: ignoring request to remove r-cran-sass which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-shape which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-shinyjs which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-sparsem which isn't installed dpkg: warning: ignoring request to remove r-cran-squarem which isn't installed dpkg: warning: ignoring request to remove r-cran-statmod which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-timechange which isn't installed dpkg: warning: ignoring request to remove r-cran-timedate which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-tzdb which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-vroom which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-writexl which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed dpkg: warning: ignoring request to remove r-cran-zip which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove salmon which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for shared-mime-info (2.4-5+b1) ... dpkg: warning: ignoring request to remove snakemake which isn't installed dpkg: warning: ignoring request to remove sphinx-common which isn't installed Purging configuration files for systemd (257.1-4) ... dpkg: warning: ignoring request to remove systemd-sysv which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove trim-galore which isn't installed Purging configuration files for ucf (3.0046) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unzip (6.0-28) ... Purging configuration files for x11-common (1:7.7+23.1) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xkb-data which isn't installed Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.83.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisal2', 'libitm1:amd64', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnlopt0:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.13:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstaden-read14t64:amd64', 'libstdc++-14-dev:amd64', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'littler', 'media-types', 'megadepth', 'mesa-libgallium:amd64', 'multiqc', 'ncbi-vdb-data', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openjdk-21-jre:amd64', 'openjdk-21-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'pigz', 'procps', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-attr', 'python3-autocommand', 'python3-babel', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-defusedxml', 'python3-dnaio', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-fonttools', 'python3-fs', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-plac', 'python3-platformdirs', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-py2bit', 'python3-pyaml-env', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-ratelimiter', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-rich', 'python3-rich-click', 'python3-roman', 'python3-rpds-py', 'python3-scipy', 'python3-smart-open', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-stopit', 'python3-sympy', 'python3-tabulate', 'python3-tenacity', 'python3-throttler', 'python3-tk:amd64', 'python3-toposort', 'python3-traitlets', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yte', 'python3-zipp', 'python3.12', 'python3.12-minimal', 'python3.12-tk', 'python3.13-tk', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-cellranger', 'r-cran-class', 'r-cran-cli', 'r-cran-clipr', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-forcats', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-haven', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-openxlsx', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-readr', 'r-cran-readxl', 'r-cran-recipes', 'r-cran-rematch', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rio', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-vroom', 'r-cran-withr', 'r-cran-writexl', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zip', 'readline-common', 'rpcsvc-proto', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 1m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--purge', 'pigx-rnaseq'] 1m56.2s DUMP: dpkg: warning: ignoring request to remove pigx-rnaseq which isn't installed 1m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--purge', 'pigx-rnaseq'] 1m56.2s INFO: Running scripts post_purge 1m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_purge_exceptions'] 1m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_purge_exceptions'] 1m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--purge', '--pending'] 1m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--purge', '--pending'] 1m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--remove', '--pending'] 1m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg', '--remove', '--pending'] 1m56.2s INFO: Running scripts post_test 1m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_test_exceptions'] 1m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'tmp/scripts/post_test_exceptions'] 1m56.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 1m56.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 1m56.7s ERROR: WARN: Broken symlinks: /etc/vconsole.conf -> default/keyboard /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf /etc/default/locale -> ../locale.conf 1m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-divert', '--list'] 1m56.7s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'dpkg-divert', '--list'] 1m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'clean'] 1m56.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m', 'apt-get', 'clean'] 1m56.8s DEBUG: Recording chroot state 1m57.0s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /var/cache/debconf/tmp.ci/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/log/private/ not owned 1m57.1s INFO: PASS: Installation and purging test. 1m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/shm'] 1m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/shm'] 1m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/console'] 1m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/console'] 1m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/ptmx'] 1m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/ptmx'] 1m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/pts'] 1m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/dev/pts'] 1m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/proc'] 1m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m/proc'] 1m57.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 1m57.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzj44xa4m'] 1m57.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzj44xa4m 1m57.4s INFO: PASS: All tests. 1m57.4s INFO: piuparts run ends. ret=0 End: 2024-12-25 04:21:44 GMT