Start: 2024-11-14 22:04:19 GMT Package: python3-cctbx Source: cctbx Version: 2024.10+ds2+~3.22.1+ds1-2 Installed-Size: 498120 Maintainer: Debian Science Maintainers Architecture: amd64 Depends: ca-certificates, libcctbx-dev (= 2024.10+ds2+~3.22.1+ds1-2), libcctbx0 (= 2024.10+ds2+~3.22.1+ds1-2), python3-pycbf (>= 0.9.7+dfsg1-2~), python3 (<< 3.14), python3 (>= 3.12~), python3-h5py (>= 3), python3-hdf5plugin, python3-matplotlib, python3-mrcfile, python3-natsort, python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3-nxmx, python3-ordered-set, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.83.0 (>= 1.83.0), libboost-numpy1.83.0-py312, libboost-numpy1.83.0-py313, libboost-python1.83.0 (>= 1.83.0), libboost-python1.83.0-py312, libboost-python1.83.0-py313, libboost-thread1.83.0 (>= 1.83.0), libboost-timer1.83.0 (>= 1.83.0), libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libgl1, libglu1-mesa | libglu1, libhdf5-103-1t64, libmmdb2-0 (>= 2.0.22), libssm2 (>= 1.4.0), libstdc++6 (>= 14) Description: Python Toolbox for crystallography Homepage: https://github.com/cctbx/cctbx_project Description-md5: 82495d7385342d38e22c572566893a2d Tag: field::physics, implemented-in::python, role::program, science::calculation, science::plotting, science::visualisation, use::analysing, use::calculating, use::viewing Section: python Priority: optional Filename: pool/main/c/cctbx/python3-cctbx_2024.10+ds2+~3.22.1+ds1-2_amd64.deb Size: 47180328 MD5sum: 8b90bcaa12929237d658e1e863aec044 SHA256: a759be8de5f98bba6cf2575835ff0185f5122176946d7357ac36ae4b41f49e98 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt 'python3-cctbx=2024.10+ds2+~3.22.1+ds1-2' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt 'python3-cctbx=2024.10+ds2+~3.22.1+ds1-2' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpwjp493_b 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpwjp493_b 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpwjp493_b/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmpwjp493_b/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'update'] 0m2.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7333 kB] Fetched 17.6 MB in 2s (11.3 MB/s) Reading package lists... 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'update'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt bsdutils libapt-pkg6.0t64 libaudit1 libblkid1 libcap-ng0 libmount1 libpcre2-8-0 libseccomp2 libselinux1 libsemanage2 libsmartcols1 libuuid1 login mount util-linux 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5065 kB of archives. After this operation, 353 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.2-11 [105 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.2-11 [35.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.2-11 [168 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.2-11 [199 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.2-11 [139 kB] Get:6 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.2-11 [1213 kB] Get:7 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.2-11 [155 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.44-2 [275 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.7-3+b1 [77.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.11 [1043 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1+b3 [47.4 kB] Get:12 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.11 [1362 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.5-3+b1 [17.5 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.2-1+b1 [55.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.2-11 [81.5 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.7-2+b1 [91.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5065 kB in 0s (83.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5154 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.2-11_amd64.deb ... Unpacking bsdutils (1:2.40.2-11) over (1:2.40.2-10) ... Setting up bsdutils (1:2.40.2-11) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5154 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.2-11_amd64.deb ... Unpacking util-linux (2.40.2-11) over (2.40.2-10) ... Setting up util-linux (2.40.2-11) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5151 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1+b3_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1+b3) over (2.5.5-1+b2) ... Setting up libseccomp2:amd64 (2.5.5-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5151 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.11_amd64.deb ... Unpacking apt (2.9.11) over (2.9.10) ... Setting up apt (2.9.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5148 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.5-3+b1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.5-3+b1) over (0.8.5-3) ... Setting up libcap-ng0:amd64 (0.8.5-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5149 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.2-1+b1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.2-1+b1) over (1:4.0.2-1) ... Setting up libaudit1:amd64 (1:4.0.2-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5150 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.2-11_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.2-11) over (1:4.16.0-2+really2.40.2-10) ... Preparing to unpack .../libsemanage2_3.7-2+b1_amd64.deb ... Unpacking libsemanage2:amd64 (3.7-2+b1) over (3.7-2) ... Setting up mount (2.40.2-11) ... Setting up libsemanage2:amd64 (3.7-2+b1) ... Setting up login (1:4.16.0-2+really2.40.2-11) ... Processing triggers for libc-bin (2.40-3) ... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s DUMP: f5c5dc2728bf227c6aebde74d9d92be9 - 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s INFO: Running scripts post_setup 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m4.5s DUMP: dpkg-query: no packages found matching systemd-sysv dpkg-query: no packages found matching sysv-rc 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'clean'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'clean'] 0m5.3s DEBUG: Recording chroot state 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DUMP: install ok installed apt apt 2.9.11 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.11 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.273 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-2 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b3 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-11 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd0:amd64 libsystemd0 257~rc1-4 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 257~rc1-4 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-11 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-7 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-divert', '--list'] 0m5.5s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-divert', '--list'] 0m5.5s INFO: Running scripts is_testable 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s INFO: apt-cache does not know about any of the requested packages 0m5.5s INFO: Running scripts pre_test 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_test_root_password'] 0m5.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_test_root_password'] 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 0m6.0s DEBUG: No broken symlinks as far as we can find. 0m6.0s INFO: Running scripts pre_install 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 0m6.5s DEBUG: No broken symlinks as far as we can find. 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-cache', 'policy'] 0m6.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-cache', 'policy'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-cache', 'policy', 'python3-cctbx'] 0m7.0s DUMP: python3-cctbx: Installed: (none) Candidate: 2024.10+ds2+~3.22.1+ds1-2 Version table: 2024.10+ds2+~3.22.1+ds1-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-cache', 'policy', 'python3-cctbx'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', '-y', 'install', 'python3-cctbx=2024.10+ds2+~3.22.1+ds1-2'] 1m10.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adduser adwaita-icon-theme at-spi2-common blt ca-certificates dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx gtk-update-icon-cache hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libapparmor1 libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcloudproviders0 libcolord2 libcrypt-dev libcups2t64 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libepoxy0 libevdev2 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0t64 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libice6 libicu72 libimagequant0 libinput-bin libinput10 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm19 liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmtdev1t64 libncursesw6 libnetcdf19t64 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnotify4 libnsl2 libopengl0 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libssm2 libstdc++-14-dev libsystemd-shared libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libz3-4 linux-libc-dev media-types mesa-libgallium netbase openssl procps pymol-data python-matplotlib-data python3 python3-appdirs python3-attr python3-autocommand python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-flexcache python3-flexparser python3-fonttools python3-fs python3-h5py python3-h5py-serial python3-hdf5plugin python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-mrcfile python3-natsort python3-numpy python3-nxmx python3-opengl python3-ordered-set python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pkg-resources python3-platformdirs python3-procrunner python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wxgtk4.0 python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-tk readline-common rpcsvc-proto shared-mime-info sphinx-rtd-theme-common systemd systemd-sysv tk8.6-blt2.5 unicode-data x11-common xkb-data zlib1g-dev Suggested packages: liblocale-gettext-perl perl cron quota adwaita-icon-theme-legacy blt-demo libboost1.83-doc gccxml libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev colord cups-common glew-utils low-memory-monitor krb5-doc krb5-user gvfs libjs-jquery-ui-docs liblcms2-utils notification-daemon libcryptsetup12 libtss2-rc0t64 pciutils qgnomeplatform-qt5 qt5-image-formats-plugins lm-sensors libstdc++-14-doc libarchive13t64 libbpf1 libdw1t64 libfido2-1 libip4tc2 libpwquality1 libqrencode4 tcl8.6 tk8.6 libwacom-bin python3-doc python3-venv python-attr-doc python-charset-normalizer-doc python-cycler-doc python-h5py-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gcc gfortran python-numpy-doc python3-pytest libgle3 python-pil-doc python3-setuptools python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg wx3.2-doc python3.12-venv python3.12-doc binutils binfmt-support readline-doc systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved systemd-repart libtss2-tcti-device0 polkitd Recommended packages: librsvg2-common at-spi2-core manpages manpages-dev libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgtk-3-bin javascript-common krb5-locales libldap-common libgpm2 publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules libkmod2 mesa-vulkan-drivers | vulkan-icd psmisc linux-sysctl-defaults hdf5-filter-plugin-blosc-serial hdf5-filter-plugin-bz2-serial hdf5-filter-plugin-lz4-serial hdf5-filter-plugin-zfp-serial hdf5-plugin-lzf python3-bs4 python3-cssselect python3-html5lib libglut-dev python3-olefile g++ | c++-compiler isympy-common systemd-timesyncd | time-daemon systemd-cryptsetup libnss-systemd The following NEW packages will be installed: adduser adwaita-icon-theme at-spi2-common blt ca-certificates dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx gtk-update-icon-cache hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libapparmor1 libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcloudproviders0 libcolord2 libcrypt-dev libcups2t64 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libepoxy0 libevdev2 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0t64 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libice6 libicu72 libimagequant0 libinput-bin libinput10 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm19 liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmtdev1t64 libncursesw6 libnetcdf19t64 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnotify4 libnsl2 libopengl0 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libssm2 libstdc++-14-dev libsystemd-shared libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libz3-4 linux-libc-dev media-types mesa-libgallium netbase openssl procps pymol-data python-matplotlib-data python3 python3-appdirs python3-attr python3-autocommand python3-brotli python3-cctbx python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-flexcache python3-flexparser python3-fonttools python3-fs python3-h5py python3-h5py-serial python3-hdf5plugin python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-mrcfile python3-natsort python3-numpy python3-nxmx python3-opengl python3-ordered-set python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pkg-resources python3-platformdirs python3-procrunner python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wxgtk4.0 python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-tk readline-common rpcsvc-proto shared-mime-info sphinx-rtd-theme-common systemd systemd-sysv tk8.6-blt2.5 unicode-data x11-common xkb-data zlib1g-dev 0 upgraded, 342 newly installed, 0 to remove and 0 not upgraded. Need to get 293 MB of archives. After this operation, 1743 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapparmor1 amd64 3.1.7-1+b3 [42.1 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libsystemd-shared amd64 257~rc1-4 [2132 kB] Get:3 http://deb.debian.org/debian sid/main amd64 systemd amd64 257~rc1-4 [3591 kB] Get:4 http://deb.debian.org/debian sid/main amd64 systemd-sysv amd64 257~rc1-4 [58.9 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.14.10-6 [203 kB] Get:6 http://deb.debian.org/debian sid/main amd64 dbus-bin amd64 1.14.10-6 [106 kB] Get:7 http://deb.debian.org/debian sid/main amd64 dbus-session-bus-common all 1.14.10-6 [79.2 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:9 http://deb.debian.org/debian sid/main amd64 dbus-daemon amd64 1.14.10-6 [185 kB] Get:10 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:11 http://deb.debian.org/debian sid/main amd64 dbus-system-bus-common all 1.14.10-6 [80.2 kB] Get:12 http://deb.debian.org/debian sid/main amd64 dbus amd64 1.14.10-6 [98.5 kB] Get:13 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:18 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:23 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:28 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-5 [69.3 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get:32 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get:34 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get:36 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get:37 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get:38 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libpam-systemd amd64 257~rc1-4 [289 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-8 [9280 B] Get:42 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:45 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5+b1 [759 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:50 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-1+b1 [141 kB] Get:55 http://deb.debian.org/debian sid/main amd64 gtk-update-icon-cache amd64 4.16.5+ds-2 [50.3 kB] Get:56 http://deb.debian.org/debian sid/main amd64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get:57 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 47.0-2 [463 kB] Get:58 http://deb.debian.org/debian sid/main amd64 at-spi2-common all 2.54.0-1 [170 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:62 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:63 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:64 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3+b2 [24.4 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get:74 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB] Get:77 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:78 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:79 http://deb.debian.org/debian sid/main amd64 dbus-user-session amd64 1.14.10-6 [79.0 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libdconf1 amd64 0.40.0-4+b3 [41.9 kB] Get:81 http://deb.debian.org/debian sid/main amd64 dconf-service amd64 0.40.0-4+b3 [32.6 kB] Get:82 http://deb.debian.org/debian sid/main amd64 dconf-gsettings-backend amd64 0.40.0-4+b3 [28.8 kB] Get:83 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB] Get:84 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:85 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.2.1-1 [190 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libann-cctbx0 amd64 1.1.2+doc-9+b1 [32.4 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libann-cctbx-dev amd64 1.1.2+doc-9+b1 [44.6 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4+b2 [50.6 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-8 [2729 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libatk1.0-0t64 amd64 2.54.0-1 [51.2 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libatspi2.0-0t64 amd64 2.54.0-1 [76.4 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libatk-bridge2.0-0t64 amd64 2.54.0-1 [67.6 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-13+b3 [112 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-13+b3 [43.2 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-13+b3 [47.5 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libboost-python1.83.0 amd64 1.83.0-3.2+b1 [320 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libboost-numpy1.83.0 amd64 1.83.0-3.2+b1 [242 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-8 [137 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-8 [25.9 kB] Get:103 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-8 [1205 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-8 [2461 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-8 [1075 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-8 [1489 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-8 [145 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-8 [2674 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.40-3 [51.8 kB] Get:110 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.11.7-1 [2454 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:112 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.40-3 [1956 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-8 [2369 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-3.2+b1 [10.6 MB] Get:116 http://deb.debian.org/debian sid/main amd64 libpython3.12t64 amd64 3.12.7-3 [2153 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB] Get:118 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libpython3.12-dev amd64 3.12.7-3 [5124 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.12.7-1 [9976 B] Get:121 http://deb.debian.org/debian sid/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.12.7-1 [26.1 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libboost-python1.83-dev amd64 1.83.0-3.2+b1 [328 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B] Get:128 http://deb.debian.org/debian sid/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2+b1 [269 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libboost-timer1.83.0 amd64 1.83.0-3.2+b1 [235 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libcairo-gobject2 amd64 1.18.2-2 [130 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:140 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:144 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libcbf1t64 amd64 0.9.7+dfsg1-4+b1 [364 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libccp4-data all 8.0.0-4 [62.7 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libccp4c0t64 amd64 8.0.0-4 [89.9 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libmmdb2-0 amd64 2.0.22-1+b2 [342 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libccp4f0t64 amd64 8.0.0-4 [208 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libccp4-dev amd64 8.0.0-4 [42.9 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libcctbx0 amd64 2024.10+ds2+~3.22.1+ds1-2 [2343 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libcctbx-dev amd64 2024.10+ds2+~3.22.1+ds1-2 [1161 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libcloudproviders0 amd64 0.3.6-1+b1 [29.2 kB] Get:155 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libcolord2 amd64 1.4.7-1+b2 [140 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libcups2t64 amd64 2.4.10-2 [251 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.4.0-1+b1 [63.6 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libdouble-conversion3 amd64 3.3.0-1+b2 [41.8 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:165 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3+b2 [51.9 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.123-1 [63.7 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libwayland-server0 amd64 1.23.0-1+b1 [34.2 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 24.2.7-1 [37.9 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libllvm19 amd64 1:19.1.3-2 [26.0 MB] Get:177 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [241 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libxcb-dri2-0 amd64 1.17.0-2+b1 [107 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libxshmfence1 amd64 1.3-1+b2 [8848 B] Get:186 http://deb.debian.org/debian sid/main amd64 mesa-libgallium amd64 24.2.7-1 [9186 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libgbm1 amd64 24.2.7-1 [42.8 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libwayland-client0 amd64 1.23.0-1+b1 [26.6 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libegl-mesa0 amd64 24.2.7-1 [133 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libepoxy0 amd64 1.5.10-2 [193 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libevdev2 amd64 1.13.3+dfsg-1 [32.2 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2+b2 [20.3 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b3 [19.3 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libvulkan1 amd64 1.3.296.0-1 [126 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 24.2.7-1 [43.9 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 24.2.7-1 [154 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libglew2.2 amd64 2.2.0-4+b2 [168 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libglu1-mesa amd64 9.0.2-1.1+b2 [185 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libwayland-cursor0 amd64 1.23.0-1+b1 [11.7 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libwayland-egl1 amd64 1.23.0-1+b1 [5664 B] Get:214 http://deb.debian.org/debian sid/main amd64 libxcomposite1 amd64 1:0.4.6-1 [16.3 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.2-1+b1 [37.6 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libxdamage1 amd64 1:1.1.6-1+b2 [15.5 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3+b2 [16.0 kB] Get:218 http://deb.debian.org/debian sid/main amd64 xkb-data all 2.42-1 [790 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libxkbcommon0 amd64 1.7.0-1 [113 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libxrandr2 amd64 2:1.5.4-1+b1 [36.3 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libgtk-3-common all 3.24.43-4 [4657 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libgtk-3-0t64 amd64 3.24.43-4 [2754 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libgudev-1.0-0 amd64 238-5+b1 [14.8 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libwacom-common all 2.13.0-1 [98.0 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libwacom9 amd64 2.13.0-1 [24.0 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libinput-bin amd64 1.26.2-1 [25.3 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libmtdev1t64 amd64 1.1.6-1.2+b1 [22.5 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libinput10 amd64 1.26.2-1 [131 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:233 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get:234 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get:235 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b2 [10.1 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libnetcdf19t64 amd64 1:4.9.2-7 [477 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libnotify4 amd64 0.8.3-1+b2 [25.9 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libpcre2-16-0 amd64 10.44-2 [260 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libpcre2-32-0 amd64 10.44-2 [248 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-2 [1866 kB] Get:244 http://deb.debian.org/debian sid/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-2 [217 kB] Get:245 http://deb.debian.org/debian sid/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB] Get:246 http://deb.debian.org/debian sid/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-2 [682 kB] Get:247 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB] Get:249 http://deb.debian.org/debian sid/main amd64 libxcb-util1 amd64 0.4.0-1+b2 [22.5 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB] Get:251 http://deb.debian.org/debian sid/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b3 [15.7 kB] Get:252 http://deb.debian.org/debian sid/main amd64 libxcb-render-util0 amd64 0.3.9-1+b2 [17.4 kB] Get:253 http://deb.debian.org/debian sid/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB] Get:254 http://deb.debian.org/debian sid/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB] Get:255 http://deb.debian.org/debian sid/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libxkbcommon-x11-0 amd64 1.7.0-1 [16.1 kB] Get:258 http://deb.debian.org/debian sid/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-2 [3498 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-2 [2400 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libqt5xml5t64 amd64 5.15.15+dfsg-2 [126 kB] Get:261 http://deb.debian.org/debian sid/main amd64 libqt5designer5 amd64 5.15.15-2 [2759 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libqt5sql5t64 amd64 5.15.15+dfsg-2 [125 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libqt5help5 amd64 5.15.15-2 [151 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-2 [150 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-2 [206 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libqt5test5t64 amd64 5.15.15+dfsg-2 [151 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libssm2 amd64 1.4.0-2+b3 [84.3 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get:271 http://deb.debian.org/debian sid/main amd64 libwxbase3.2-1t64 amd64 3.2.6+dfsg-2 [1041 kB] Get:272 http://deb.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.3-1.1+b2 [25.9 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libwxgtk3.2-1t64 amd64 3.2.6+dfsg-2 [4695 kB] Get:274 http://deb.debian.org/debian sid/main amd64 libwxgtk-gl3.2-1t64 amd64 3.2.6+dfsg-2 [84.1 kB] Get:275 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get:276 http://deb.debian.org/debian sid/main amd64 pymol-data all 3.0.0+dfsg-1 [1433 kB] Get:277 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get:278 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:279 http://deb.debian.org/debian sid/main amd64 python3-attr all 24.2.0-1 [68.4 kB] Get:280 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:281 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b6 [321 kB] Get:282 http://deb.debian.org/debian sid/main amd64 python3-pycbf amd64 0.9.7+dfsg1-4+b1 [165 kB] Get:283 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:284 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:285 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:286 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:287 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:288 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:289 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get:290 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get:291 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.11.0-8 [1020 kB] Get:292 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.11.0-8 [14.9 kB] Get:293 http://deb.debian.org/debian sid/main amd64 python3-hdf5plugin all 4.0.1-3 [22.9 kB] Get:294 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:295 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get:296 http://deb.debian.org/debian sid/main amd64 python3.12-tk amd64 3.12.7-3 [112 kB] Get:297 http://deb.debian.org/debian sid/main amd64 python3.13-tk amd64 3.13.0-2 [103 kB] Get:298 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.12.7-1 [9444 B] Get:299 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.4.0-1+b1 [79.8 kB] Get:300 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:301 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.3.0-2+b1 [264 kB] Get:302 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:303 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:304 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get:305 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get:306 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get:307 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b5 [25.6 kB] Get:308 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:309 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.13.1-5 [16.7 MB] Get:310 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:311 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.13.3-1 [4147 kB] Get:312 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [32.9 kB] Get:313 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b3 [299 kB] Get:314 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:315 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.54.1-4+b1 [1631 kB] Get:316 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.7-2+b1 [77.0 kB] Get:317 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get:318 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.8.3-3+b1 [5654 kB] Get:319 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1022 kB] Get:320 http://deb.debian.org/debian sid/main amd64 python3-mrcfile all 1.5.3-3 [119 kB] Get:321 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get:322 http://deb.debian.org/debian sid/main amd64 python3-flexcache all 0.3-2 [13.5 kB] Get:323 http://deb.debian.org/debian sid/main amd64 python3-flexparser all 0.4-1 [42.9 kB] Get:324 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get:325 http://deb.debian.org/debian sid/main amd64 python3-pint all 0.24.4-1 [225 kB] Get:326 http://deb.debian.org/debian sid/main amd64 python3-nxmx all 0.0.3-3 [15.4 kB] Get:327 http://deb.debian.org/debian sid/main amd64 python3-ordered-set all 4.1.0-1 [9628 B] Get:328 http://deb.debian.org/debian sid/main amd64 python3-procrunner all 2.3.3-2 [13.9 kB] Get:329 http://deb.debian.org/debian sid/main amd64 python3-opengl all 3.1.7+dfsg-1 [604 kB] Get:330 http://deb.debian.org/debian sid/main amd64 python3-pyqt5.sip amd64 12.15.0-1+b1 [66.2 kB] Get:331 http://deb.debian.org/debian sid/main amd64 python3-pyqt5 amd64 5.15.11+dfsg-1+b1 [2521 kB] Get:332 http://deb.debian.org/debian sid/main amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-1+b1 [208 kB] Get:333 http://deb.debian.org/debian sid/main amd64 python3-pymol amd64 3.0.0+dfsg-1 [3839 kB] Get:334 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get:335 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get:336 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.8-2 [41.6 kB] Get:337 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get:338 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:339 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:340 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.67.0-1 [90.2 kB] Get:341 http://deb.debian.org/debian sid/main amd64 python3-wxgtk4.0 amd64 4.2.2+dfsg-1+b1 [9449 kB] Get:342 http://deb.debian.org/debian sid/main amd64 python3-cctbx amd64 2024.10+ds2+~3.22.1+ds1-2 [47.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 293 MB in 11s (26.7 MB/s) Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.1.7-1+b3_amd64.deb ... Unpacking libapparmor1:amd64 (3.1.7-1+b3) ... Selecting previously unselected package libsystemd-shared:amd64. Preparing to unpack .../libsystemd-shared_257~rc1-4_amd64.deb ... Unpacking libsystemd-shared:amd64 (257~rc1-4) ... Selecting previously unselected package systemd. Preparing to unpack .../systemd_257~rc1-4_amd64.deb ... Unpacking systemd (257~rc1-4) ... Setting up libapparmor1:amd64 (3.1.7-1+b3) ... Setting up libsystemd-shared:amd64 (257~rc1-4) ... Setting up systemd (257~rc1-4) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. [ESC][0;1;39m/usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring.[ESC][0m [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6111 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_257~rc1-4_amd64.deb ... Unpacking systemd-sysv (257~rc1-4) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../1-libdbus-1-3_1.14.10-6_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.10-6) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../2-dbus-bin_1.14.10-6_amd64.deb ... Unpacking dbus-bin (1.14.10-6) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../3-dbus-session-bus-common_1.14.10-6_all.deb ... Unpacking dbus-session-bus-common (1.14.10-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../4-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../5-dbus-daemon_1.14.10-6_amd64.deb ... Unpacking dbus-daemon (1.14.10-6) ... Selecting previously unselected package adduser. Preparing to unpack .../6-adduser_3.137_all.deb ... Unpacking adduser (3.137) ... Setting up adduser (3.137) ... Selecting previously unselected package dbus-system-bus-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6254 files and directories currently installed.) Preparing to unpack .../dbus-system-bus-common_1.14.10-6_all.deb ... Unpacking dbus-system-bus-common (1.14.10-6) ... Selecting previously unselected package dbus. Preparing to unpack .../dbus_1.14.10-6_amd64.deb ... Unpacking dbus (1.14.10-6) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6620 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../03-libncursesw6_6.5-2+b1_amd64.deb ... Unpacking libncursesw6:amd64 (6.5-2+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../05-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../06-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../07-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../08-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../09-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../10-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../11-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../13-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7178 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... 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Setting up libboost-python1.83.0 (1.83.0-3.2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Setting up libwayland-server0:amd64 (1.23.0-1+b1) ... Setting up libpciaccess0:amd64 (0.17-3+b2) ... Setting up systemd-sysv (257~rc1-4) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b2) ... Setting up libdouble-conversion3:amd64 (3.3.0-1+b2) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up fonts-lato (2.015-1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libantlr3c-3.4-0:amd64 (3.4+dfsg-4+b2) ... Setting up hicolor-icon-theme (0.18-1) ... Setting up libxcb-xinput0:amd64 (1.17.0-2+b1) ... Setting up libdatrie1:amd64 (0.2.13-3+b1) ... Setting up libmmdb2-0:amd64 (2.0.22-1+b2) ... Setting up libboost-timer1.83.0:amd64 (1.83.0-3.2+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libglvnd0:amd64 (1.7.0-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libxcb-glx0:amd64 (1.17.0-2+b1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b3) ... Setting up libxcb-shape0:amd64 (1.17.0-2+b1) ... Setting up x11-common (1:7.7+23.1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-10) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up linux-libc-dev (6.11.7-1) ... Setting up libboost-thread1.83.0:amd64 (1.83.0-3.2+b1) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b2) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b2) ... Setting up xkb-data (2.42-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libxcb-icccm4:amd64 (0.4.2-1) ... Setting up libccp4-data (8.0.0-4) ... Setting up libgomp1:amd64 (14.2.0-8) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:amd64 (10.44-2) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libopengl0:amd64 (1.7.0-1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libxcb-util1:amd64 (0.4.0-1+b2) ... Setting up libxcb-xkb1:amd64 (1.17.0-2+b1) ... Setting up libxcb-image0:amd64 (0.4.0-2+b2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... Setting up unicode-data (15.1.0-1) ... Setting up libboost-numpy1.83.0 (1.83.0-3.2+b1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libpcre2-32-0:amd64 (10.44-2) ... Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb-xinerama0:amd64 (1.17.0-2+b1) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libann-cctbx0 (1.1.2+doc-9+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libepoxy0:amd64 (1.5.10-2) ... Setting up libxcb-sync1:amd64 (1.17.0-2+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libavahi-common-data:amd64 (0.8-13+b3) ... Setting up libdbus-1-3:amd64 (1.14.10-6) ... Setting up liblzf1:amd64 (3.6-4+b2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libquadmath0:amd64 (14.2.0-8) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up pymol-data (3.0.0+dfsg-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up libatomic1:amd64 (14.2.0-8) ... Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libsensors5:amd64 (1:3.6.0-10+b1) ... Setting up libncursesw6:amd64 (6.5-2+b1) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libglapi-mesa:amd64 (24.2.7-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up libvulkan1:amd64 (1.3.296.0-1) ... Setting up libnghttp3-9:amd64 (1.4.0-1+b1) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up libubsan1:amd64 (14.2.0-8) ... Setting up libxcb-dri2-0:amd64 (1.17.0-2+b1) ... Setting up libmtdev1t64:amd64 (1.1.6-1.2+b1) ... Setting up libxshmfence1:amd64 (1.3-1+b2) ... Setting up libhwasan0:amd64 (14.2.0-8) ... Setting up at-spi2-common (2.54.0-1) ... Setting up libccp4c0t64:amd64 (8.0.0-4) ... Setting up libcrypt-dev:amd64 (1:4.4.36-5) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libxcb-randr0:amd64 (1.17.0-2+b1) ... Setting up dbus-session-bus-common (1.14.10-6) ... Setting up libasan8:amd64 (14.2.0-8) ... Setting up procps (2:4.0.4-6) ... Setting up libmd4c0:amd64 (0.5.2-2+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1+b2) ... Setting up libwayland-egl1:amd64 (1.23.0-1+b1) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libtsan2:amd64 (14.2.0-8) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up dbus-system-bus-common (1.14.10-6) ... Setting up libc-dev-bin (2.40-3) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-2) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libxcomposite1:amd64 (1:0.4.6-1) ... Setting up libevdev2:amd64 (1.13.3+dfsg-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ... Setting up dbus-bin (1.14.10-6) ... Setting up liblsan0:amd64 (14.2.0-8) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libitm1:amd64 (14.2.0-8) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libann-cctbx-dev (1.1.2+doc-9+b1) ... Setting up libwacom-common (2.13.0-1) ... Setting up libxkbcommon0:amd64 (1.7.0-1) ... Setting up libwayland-client0:amd64 (1.23.0-1+b1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Setting up libllvm19:amd64 (1:19.1.3-2) ... Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxdamage1:amd64 (1:1.1.6-1+b2) ... Setting up libssm2:amd64 (1.4.0-2+b3) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libavahi-common3:amd64 (0.8-13+b3) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up dbus-daemon (1.14.10-6) ... Setting up libccp4f0t64:amd64 (8.0.0-4) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b2) ... Setting up dbus (1.14.10-6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b1) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b2) ... Setting up libxkbcommon-x11-0:amd64 (1.7.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b1) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libwayland-cursor0:amd64 (1.23.0-1+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libpam-systemd:amd64 (257~rc1-4) ... Setting up libc6-dev:amd64 (2.40-3) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libgcc-14-dev:amd64 (14.2.0-8) ... Setting up libstdc++-14-dev:amd64 (14.2.0-8) ... Setting up libsm6:amd64 (2:1.2.4-1) ... Setting up libavahi-client3:amd64 (0.8-13+b3) ... Setting up libgudev-1.0-0:amd64 (238-5+b1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up gtk-update-icon-cache (4.16.5+ds-2) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b2) ... Setting up libboost1.83-dev:amd64 (1.83.0-3.2+b1) ... Setting up libatk1.0-0t64:amd64 (2.54.0-1) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up libccp4-dev:amd64 (8.0.0-4) ... Setting up libwacom9:amd64 (2.13.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1+b2) ... Setting up libtk8.6:amd64 (8.6.15-1) ... Setting up libxcursor1:amd64 (1:1.2.2-1+b1) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libdrm-intel1:amd64 (2.4.123-1) ... Setting up python3.12-tk (3.12.7-3) ... Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ... Setting up libcloudproviders0:amd64 (0.3.6-1+b1) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up python3.13-tk (3.13.0-2) ... Setting up libcolord2:amd64 (1.4.7-1+b2) ... Setting up libinput-bin (1.26.2-1) ... Setting up libdconf1:amd64 (0.40.0-4+b3) ... Setting up dbus-user-session (1.14.10-6) ... Setting up libqt5core5t64:amd64 (5.15.15+dfsg-2) ... Setting up libexpat1-dev:amd64 (2.6.4-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libnotify4:amd64 (0.8.3-1+b2) ... Setting up libatspi2.0-0t64:amd64 (2.54.0-1) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-2) ... Setting up libcairo-gobject2:amd64 (1.18.2-2) ... Setting up libwxbase3.2-1t64:amd64 (3.2.6+dfsg-2) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Setting up libcups2t64:amd64 (2.4.10-2) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Setting up libatk-bridge2.0-0t64:amd64 (2.54.0-1) ... Setting up libinput10:amd64 (1.26.2-1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Setting up mesa-libgallium:amd64 (24.2.7-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libnetcdf19t64:amd64 (1:4.9.2-7) ... Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-2) ... Setting up libcbf1t64:amd64 (0.9.7+dfsg1-4+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up libgbm1:amd64 (24.2.7-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.7-3) ... Setting up libgl1-mesa-dri:amd64 (24.2.7-1) ... Setting up libqt5network5t64:amd64 (5.15.15+dfsg-2) ... Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-2) ... Setting up dconf-service (0.40.0-4+b3) ... Setting up libqt5test5t64:amd64 (5.15.15+dfsg-2) ... Setting up libpython3.12t64:amd64 (3.12.7-3) ... Setting up libegl-mesa0:amd64 (24.2.7-1) ... Setting up libegl1:amd64 (1.7.0-1+b2) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-2) ... Setting up libglx-mesa0:amd64 (24.2.7-1) ... Setting up libglx0:amd64 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-4+b3) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:amd64 (3.12.7-3) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.1-1) ... Setting up libgl1:amd64 (1.7.0-1+b2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-pycbf (0.9.7+dfsg1-4+b1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libglew2.2:amd64 (2.2.0-4+b2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pyqt5.sip (12.15.0-1+b1) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-flexcache (0.3-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-procrunner (2.3.3-2) ... Setting up libgtk-3-common (3.24.43-4) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up libpython3-dev:amd64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b5) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b3) ... Setting up python3-tqdm (4.67.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-ordered-set (4.1.0-1) ... Setting up python3-tk:amd64 (3.12.7-1) ... Setting up python3-opengl (3.1.7+dfsg-1) ... /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' '''OpenGL extension AMD.vertex_shader_tessellator Setting up python3-inflect (7.3.1-2) ... Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-2) ... Setting up python3-flexparser (0.4-1) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Setting up python3-dev (3.12.7-1) ... Setting up libgtk-3-0t64:amd64 (3.24.43-4) ... Setting up libboost-python1.83-dev (1.83.0-3.2+b1) ... Setting up libwxgtk3.2-1t64:amd64 (3.2.6+dfsg-2) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.6+dfsg-2) ... Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-2) ... Setting up python3-wxgtk4.0 (4.2.2+dfsg-1+b1) ... Setting up libqt5help5:amd64 (5.15.15-2) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pint (0.24.4-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.0-2+b1) ... Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-2) ... Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-2) ... Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-2) ... Setting up python3-mrcfile (1.5.3-3) ... Setting up python3-scipy (1.13.1-5) ... Setting up libqt5designer5:amd64 (5.15.15-2) ... Setting up python3-h5py-serial (3.11.0-8) ... Setting up python3-h5py (3.11.0-8) ... Setting up python3-hdf5plugin (4.0.1-3) ... Setting up python3-nxmx (0.0.3-3) ... Setting up python3-pyqt5 (5.15.11+dfsg-1+b1) ... Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1+b1) ... Setting up python3-pymol (3.0.0+dfsg-1) ... Setting up python3-fonttools (4.54.1-4+b1) ... Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-2) ... /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' """ Iterator to generate strings of length n_chars, using upper-case, /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' width=pairwise_differences_db, label='$\omega_{hkl}$' /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' axes[0].set_ylabel('Distribution of $\omega_{hbk}$') /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') Processing triggers for libc-bin (2.40-3) ... Processing triggers for systemd (257~rc1-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', '-y', 'install', 'python3-cctbx=2024.10+ds2+~3.22.1+ds1-2'] 1m10.3s INFO: Running scripts post_install 1m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_install_exceptions'] 1m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_install_exceptions'] 1m10.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 1m12.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 1m15.4s ERROR: WARN: Broken symlinks: /var/log/README -> ../../usr/share/doc/systemd/README.logs /etc/vconsole.conf -> default/keyboard /etc/default/locale -> ../locale.conf /usr/lib/x86_64-linux-gnu/qt-default/qtchooser/default.conf -> ../../../../share/qtchooser/qt5-x86_64-linux-gnu.conf (libqt5core5t64:amd64) /usr/share/doc/python3.13-tk/README.Tk -> ../python3.13/README.Tk (python3.13-tk) /usr/share/doc/python3.12-tk/README.Tk -> ../python3.12/README.Tk (python3.12-tk) /usr/share/doc/libhdf5-hl-100t64/RELEASE.txt.gz -> changelog.gz (libhdf5-hl-100t64:amd64) /usr/share/doc/libgtk-3-0t64/README.md -> ../libgtk-3-common/README.md (libgtk-3-0t64:amd64) /usr/share/doc/libgtk-3-0t64/NEWS.gz -> ../libgtk-3-common/NEWS.gz (libgtk-3-0t64:amd64) /usr/share/doc/libhdf5-103-1t64/RELEASE.txt.gz -> changelog.gz (libhdf5-103-1t64:amd64) /usr/share/doc/libexpat1-dev/expat.html/index.html -> reference.html (libexpat1-dev:amd64) /usr/share/doc/fonts-lyx/NEWS.gz -> changelog.gz (fonts-lyx) /usr/share/doc/libxml2/NEWS.gz -> changelog.gz (libxml2:amd64) /usr/share/doc/python3/index.html -> python-policy.html (python3-dev) /usr/share/doc/python3.12/python-policy.txt.gz -> ../python3/python-policy.txt.gz (python3) /usr/share/doc/python3.12/changelog.gz -> NEWS.gz (python3.12) 1m17.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', '-ac', '--ignore-obsolete'] 1m21.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', '-ac', '--ignore-obsolete'] 1m21.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m21.3s DUMP: 0.15.6 1m21.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m21.3s INFO: Running adequate version 0.15.6 now. 1m21.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'python3-cctbx'] 1m23.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'python3-cctbx'] 1m23.8s INFO: Running scripts pre_remove 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_exceptions'] 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/pre_remove_exceptions'] 1m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m34.4s DUMP: install ok installed adduser adduser 3.137 install ok installed adwaita-icon-theme adwaita-icon-theme 47.0-2 install ok installed apt apt 2.9.11 install ok installed at-spi2-common at-spi2-common 2.54.0-1 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.40.2-11 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed dbus dbus 1.14.10-6 install ok installed dbus-bin dbus-bin 1.14.10-6 install ok installed dbus-daemon dbus-daemon 1.14.10-6 install ok installed dbus-session-bus-common dbus-session-bus-common 1.14.10-6 install ok installed dbus-system-bus-common dbus-system-bus-common 1.14.10-6 install ok installed dbus-user-session dbus-user-session 1.14.10-6 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.40.0-4+b3 install ok installed dconf-service dconf-service 0.40.0-4+b3 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-1.1+b1 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1+b1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-lyx fonts-lyx 2.4.2.1-1 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-8 install ok installed gpgv gpgv 2.2.45-2 install ok installed grep grep 3.11-4 install ok installed gtk-update-icon-cache gtk-update-icon-cache 4.16.5+ds-2 install ok installed gzip gzip 1.12-1.1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.18-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libann-cctbx-dev libann-cctbx-dev 1.1.2+doc-9+b1 install ok installed libann-cctbx0 libann-cctbx0 1.1.2+doc-9+b1 install ok installed libantlr3c-3.4-0:amd64 libantlr3c-3.4-0 3.4+dfsg-4+b2 install ok installed libapparmor1:amd64 libapparmor1 3.1.7-1+b3 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.11 install ok installed libasan8:amd64 libasan8 14.2.0-8 install ok installed libatk-bridge2.0-0t64:amd64 libatk-bridge2.0-0t64 2.54.0-1 install ok installed libatk1.0-0t64:amd64 libatk1.0-0t64 2.54.0-1 install ok installed libatomic1:amd64 libatomic1 14.2.0-8 install ok installed libatspi2.0-0t64:amd64 libatspi2.0-0t64 2.54.0-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-1+b1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-13+b3 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-13+b3 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-13+b3 install ok installed libblas3:amd64 libblas3 3.12.0-3+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-11 install ok installed libboost-numpy1.83.0 libboost-numpy1.83.0 1.83.0-3.2+b1 install ok installed libboost-python-dev libboost-python-dev 1.83.0.2+b2 install ok installed libboost-python1.83-dev libboost-python1.83-dev 1.83.0-3.2+b1 install ok installed libboost-python1.83.0 libboost-python1.83.0 1.83.0-3.2+b1 install ok installed libboost-thread1.83.0:amd64 libboost-thread1.83.0 1.83.0-3.2+b1 install ok installed libboost-timer1.83.0:amd64 libboost-timer1.83.0 1.83.0-3.2+b1 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-3.2+b1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc-dev-bin libc-dev-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libc6-dev:amd64 libc6-dev 2.40-3 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.18.2-2 install ok installed libcairo2:amd64 libcairo2 1.18.2-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcbf1t64:amd64 libcbf1t64 0.9.7+dfsg1-4+b1 install ok installed libccp4-data libccp4-data 8.0.0-4 install ok installed libccp4-dev:amd64 libccp4-dev 8.0.0-4 install ok installed libccp4c0t64:amd64 libccp4c0t64 8.0.0-4 install ok installed libccp4f0t64:amd64 libccp4f0t64 8.0.0-4 install ok installed libcctbx-dev libcctbx-dev 2024.10+ds2+~3.22.1+ds1-2 install ok installed libcctbx0 libcctbx0 2024.10+ds2+~3.22.1+ds1-2 install ok installed libcloudproviders0:amd64 libcloudproviders0 0.3.6-1+b1 install ok installed libcolord2:amd64 libcolord2 1.4.7-1+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libcups2t64:amd64 libcups2t64 2.4.10-2 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.11.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.11.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-6 install ok installed libdconf1:amd64 libdconf1 0.40.0-4+b3 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.273 install ok installed libdeflate0:amd64 libdeflate0 1.22-1 install ok installed libdouble-conversion3:amd64 libdouble-conversion3 3.3.0-1+b2 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.123-1 install ok installed libdrm-common libdrm-common 2.4.123-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.123-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.123-1 install ok installed libdrm2:amd64 libdrm2 2.4.123-1 install ok installed libedit2:amd64 libedit2 3.1-20240808-1 install ok installed libegl-mesa0:amd64 libegl-mesa0 24.2.7-1 install ok installed libegl1:amd64 libegl1 1.7.0-1+b2 install ok installed libelf1t64:amd64 libelf1t64 0.192-4 install ok installed libepoxy0:amd64 libepoxy0 1.5.10-2 install ok installed libevdev2:amd64 libevdev2 1.13.3+dfsg-1 install ok installed libexpat1:amd64 libexpat1 2.6.4-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.6.4-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1+b1 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.15-1 install ok installed libgbm1:amd64 libgbm1 24.2.7-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-8 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-8 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.12+dfsg-1+b1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.12+dfsg-1 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-8 install ok installed libgl1:amd64 libgl1 1.7.0-1+b2 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 24.2.7-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 24.2.7-1 install ok installed libglew2.2:amd64 libglew2.2 2.2.0-4+b2 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.82.2-3 install ok installed libglu1-mesa:amd64 libglu1-mesa 9.0.2-1.1+b2 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1+b2 install ok installed libglx-mesa0:amd64 libglx-mesa0 24.2.7-1 install ok installed libglx0:amd64 libglx0 1.7.0-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.8-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-8 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libgtk-3-0t64:amd64 libgtk-3-0t64 3.24.43-4 install ok installed libgtk-3-common libgtk-3-common 3.24.43-4 install ok installed libgudev-1.0-0:amd64 libgudev-1.0-0 238-5+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.0.1-1 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-4 install ok installed libhdf5-hl-100t64:amd64 libhdf5-hl-100t64 1.10.10+repack-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-8 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu72:amd64 libicu72 72.1-5+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libinput-bin libinput-bin 1.26.2-1 install ok installed libinput10:amd64 libinput10 1.26.2-1 install ok installed libitm1:amd64 libitm1 14.2.0-8 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3+b1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.4.7-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblapack3:amd64 liblapack3 3.12.0-3+b1 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b2 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-3+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed libllvm19:amd64 libllvm19 1:19.1.3-2 install ok installed liblsan0:amd64 liblsan0 14.2.0-8 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzf1:amd64 liblzf1 3.6-4+b2 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmd4c0:amd64 libmd4c0 0.5.2-2+b1 install ok installed libmmdb2-0:amd64 libmmdb2-0 2.0.22-1+b2 install ok installed libmount1:amd64 libmount1 2.40.2-11 install ok installed libmtdev1t64:amd64 libmtdev1t64 1.1.6-1.2+b1 install ok installed libncursesw6:amd64 libncursesw6 6.5-2+b1 install ok installed libnetcdf19t64:amd64 libnetcdf19t64 1:4.9.2-7 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.4.0-1+b1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.6.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.6.0-1 install ok installed libnotify4:amd64 libnotify4 0.8.3-1+b2 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b3 install ok installed libopengl0:amd64 libopengl0 1.7.0-1+b2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b4 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam-systemd:amd64 libpam-systemd 257~rc1-4 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.54.0+ds-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.54.0+ds-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.54.0+ds-3 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3+b2 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.44-2 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.44-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.44-2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.44-2 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-6 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.12.7-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.7-1 install ok installed libpython3.12-dev:amd64 libpython3.12-dev 3.12.7-3 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.7-3 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.7-3 install ok installed libpython3.12t64:amd64 libpython3.12t64 3.12.7-3 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b2 install ok installed libqt5core5t64:amd64 libqt5core5t64 5.15.15+dfsg-2 install ok installed libqt5dbus5t64:amd64 libqt5dbus5t64 5.15.15+dfsg-2 install ok installed libqt5designer5:amd64 libqt5designer5 5.15.15-2 install ok installed libqt5gui5t64:amd64 libqt5gui5t64 5.15.15+dfsg-2 install ok installed libqt5help5:amd64 libqt5help5 5.15.15-2 install ok installed libqt5network5t64:amd64 libqt5network5t64 5.15.15+dfsg-2 install ok installed libqt5opengl5t64:amd64 libqt5opengl5t64 5.15.15+dfsg-2 install ok installed libqt5printsupport5t64:amd64 libqt5printsupport5t64 5.15.15+dfsg-2 install ok installed libqt5sql5t64:amd64 libqt5sql5t64 5.15.15+dfsg-2 install ok installed libqt5test5t64:amd64 libqt5test5t64 5.15.15+dfsg-2 install ok installed libqt5widgets5t64:amd64 libqt5widgets5t64 5.15.15+dfsg-2 install ok installed libqt5xml5t64:amd64 libqt5xml5t64 5.15.15+dfsg-2 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-8 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-8 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-8 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b3 install ok installed libselinux1:amd64 libselinux1 3.7-3+b1 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2+b1 install ok installed libsensors-config libsensors-config 1:3.6.0-10 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-10+b1 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.4.0-0.1+b1 install ok installed libsm6:amd64 libsm6 2:1.2.4-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-11 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libssm2:amd64 libssm2 1.4.0-2+b3 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-8 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-8 install ok installed libsystemd-shared:amd64 libsystemd-shared 257~rc1-4 install ok installed libsystemd0:amd64 libsystemd0 257~rc1-4 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.15+dfsg-2 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1 install ok installed libtk8.6:amd64 libtk8.6 8.6.15-1 install ok installed libtsan2:amd64 libtsan2 14.2.0-8 install ok installed libubsan1:amd64 libubsan1 14.2.0-8 install ok installed libudev1:amd64 libudev1 257~rc1-4 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-11 install ok installed libvulkan1:amd64 libvulkan1 1.3.296.0-1 install ok installed libwacom-common libwacom-common 2.13.0-1 install ok installed libwacom9:amd64 libwacom9 2.13.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.23.0-1+b1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.23.0-1+b1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.23.0-1+b1 install ok installed libwayland-server0:amd64 libwayland-server0 1.23.0-1+b1 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.4.0-0.1+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.4.0-0.1+b1 install ok installed libwxbase3.2-1t64:amd64 libwxbase3.2-1t64 3.2.6+dfsg-2 install ok installed libwxgtk-gl3.2-1t64:amd64 libwxgtk-gl3.2-1t64 3.2.6+dfsg-2 install ok installed libwxgtk3.2-1t64:amd64 libwxgtk3.2-1t64 3.2.6+dfsg-2 install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2 install ok installed libx11-data libx11-data 2:1.8.10-2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.10-2 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.17.0-2+b1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2+b1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2+b1 install ok installed libxcb-icccm4:amd64 libxcb-icccm4 0.4.2-1 install ok installed libxcb-image0:amd64 libxcb-image0 0.4.0-2+b2 install ok installed libxcb-keysyms1:amd64 libxcb-keysyms1 0.4.0-1+b3 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2+b1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2+b1 install ok installed libxcb-render-util0:amd64 libxcb-render-util0 0.3.9-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2+b1 install ok installed libxcb-util1:amd64 libxcb-util1 0.4.0-1+b2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2+b1 install ok installed libxcb-xinerama0:amd64 libxcb-xinerama0 1.17.0-2+b1 install ok installed libxcb-xinput0:amd64 libxcb-xinput0 1.17.0-2+b1 install ok installed libxcb-xkb1:amd64 libxcb-xkb1 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.6-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.2-1+b1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3+b2 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b2 install ok installed libxft2:amd64 libxft2 2.3.6-1+b2 install ok installed libxi6:amd64 libxi6 2:1.8.2-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b2 install ok installed libxkbcommon-x11-0:amd64 libxkbcommon-x11-0 1.7.0-1 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.7.0-1 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.2+b1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b2 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1+b2 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b2 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1+b2 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed linux-libc-dev linux-libc-dev 6.11.7-1 install ok installed login login 1:4.16.0-2+really2.40.2-11 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed media-types media-types 10.1.0 install ok installed mesa-libgallium:amd64 mesa-libgallium 24.2.7-1 install ok installed mount mount 2.40.2-11 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.3.2-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-7 install ok installed procps procps 2:4.0.4-6 install ok installed pymol-data pymol-data 3.0.0+dfsg-1 install ok installed python-matplotlib-data python-matplotlib-data 3.8.3-3 install ok installed python3 python3 3.12.7-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 24.2.0-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-brotli python3-brotli 1.1.0-2+b6 install ok installed python3-cctbx python3-cctbx 2024.10+ds2+~3.22.1+ds1-2 install ok installed python3-certifi python3-certifi 2024.8.30+dfsg-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.0-1+b1 install ok installed python3-contourpy python3-contourpy 1.3.0-2+b1 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dev python3-dev 3.12.7-1 install ok installed python3-flexcache python3-flexcache 0.3-2 install ok installed python3-flexparser python3-flexparser 0.4-1 install ok installed python3-fonttools python3-fonttools 4.54.1-4+b1 install ok installed python3-fs python3-fs 2.4.16-4 install ok installed python3-h5py python3-h5py 3.11.0-8 install ok installed python3-h5py-serial python3-h5py-serial 3.11.0-8 install ok installed python3-hdf5plugin python3-hdf5plugin 4.0.1-3 install ok installed python3-idna python3-idna 3.8-2 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.7-2+b1 install ok installed python3-lxml:amd64 python3-lxml 5.3.0-1+b1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b5 install ok installed python3-matplotlib python3-matplotlib 3.8.3-3+b1 install ok installed python3-minimal python3-minimal 3.12.7-1 install ok installed python3-more-itertools python3-more-itertools 10.5.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-mrcfile python3-mrcfile 1.5.3-3 install ok installed python3-natsort python3-natsort 8.0.2-2 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-12 install ok installed python3-nxmx python3-nxmx 0.0.3-3 install ok installed python3-opengl python3-opengl 3.1.7+dfsg-1 install ok installed python3-ordered-set python3-ordered-set 4.1.0-1 install ok installed python3-packaging python3-packaging 24.1-1 install ok installed python3-pil:amd64 python3-pil 10.4.0-1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.4.0-1+b1 install ok installed python3-pint python3-pint 0.24.4-1 install ok installed python3-pkg-resources python3-pkg-resources 75.2.0-1 install ok installed python3-platformdirs python3-platformdirs 4.3.6-1 install ok installed python3-procrunner python3-procrunner 2.3.3-2 install ok installed python3-pycbf python3-pycbf 0.9.7+dfsg1-4+b1 install ok installed python3-pymol python3-pymol 3.0.0+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pyqt5 python3-pyqt5 5.15.11+dfsg-1+b1 install ok installed python3-pyqt5.qtopengl python3-pyqt5.qtopengl 5.15.11+dfsg-1+b1 install ok installed python3-pyqt5.sip python3-pyqt5.sip 12.15.0-1+b1 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-scipy python3-scipy 1.13.1-5 install ok installed python3-six python3-six 1.16.0-7 install ok installed python3-sympy python3-sympy 1.13.3-1 install ok installed python3-tk:amd64 python3-tk 3.12.7-1 install ok installed python3-tqdm python3-tqdm 4.67.0-1 install ok installed python3-typeguard python3-typeguard 4.4.1-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-ufolib2 python3-ufolib2 0.16.1+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b3 install ok installed python3-urllib3 python3-urllib3 2.0.7-2 install ok installed python3-wxgtk4.0 python3-wxgtk4.0 4.2.2+dfsg-1+b1 install ok installed python3.12 python3.12 3.12.7-3 install ok installed python3.12-dev python3.12-dev 3.12.7-3 install ok installed python3.12-minimal python3.12-minimal 3.12.7-3 install ok installed python3.12-tk python3.12-tk 3.12.7-3 install ok installed python3.13-tk python3.13-tk 3.13.0-2 install ok installed readline-common readline-common 8.2-5 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed shared-mime-info shared-mime-info 2.4-5+b1 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 3.0.1+dfsg-1 install ok installed systemd systemd 257~rc1-4 install ok installed systemd-sysv systemd-sysv 257~rc1-4 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed tzdata tzdata 2024b-3 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-11 install ok installed x11-common x11-common 1:7.7+23.1 install ok installed xkb-data xkb-data 2.42-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libboost-numpy1.83.0', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost-thread1.83.0:amd64', 'libboost-timer1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0t64:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmtdev1t64:amd64', 'libncursesw6:amd64', 'libnetcdf19t64:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libqhull-r8.0:amd64', 'libqt5core5t64:amd64', 'libqt5dbus5t64:amd64', 'libqt5designer5:amd64', 'libqt5gui5t64:amd64', 'libqt5help5:amd64', 'libqt5network5t64:amd64', 'libqt5opengl5t64:amd64', 'libqt5printsupport5t64:amd64', 'libqt5sql5t64:amd64', 'libqt5test5t64:amd64', 'libqt5widgets5t64:amd64', 'libqt5xml5t64:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssm2:amd64', 'libstdc++-14-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1t64:amd64', 'libwxgtk-gl3.2-1t64:amd64', 'libwxgtk3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'media-types', 'mesa-libgallium:amd64', 'netbase', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-flexcache', 'python3-flexparser', 'python3-fonttools', 'python3-fs', 'python3-h5py', 'python3-h5py-serial', 'python3-hdf5plugin', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-natsort', 'python3-numpy', 'python3-nxmx', 'python3-opengl', 'python3-ordered-set', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-platformdirs', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.12-tk', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64', 'python3-cctbx'] 1m41.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adduser adwaita-icon-theme at-spi2-common blt ca-certificates dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx gtk-update-icon-cache hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libapparmor1 libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcloudproviders0 libcolord2 libcrypt-dev libcups2t64 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1t64 libepoxy0 libevdev2 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0t64 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libice6 libicu72 libimagequant0 libinput-bin libinput10 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm19 liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmtdev1t64 libncursesw6 libnetcdf19t64 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnotify4 libnsl2 libopengl0 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libssm2 libstdc++-14-dev libsystemd-shared libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libz3-4 linux-libc-dev media-types mesa-libgallium netbase openssl procps pymol-data python-matplotlib-data python3 python3-appdirs python3-attr python3-autocommand python3-brotli python3-cctbx python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-flexcache python3-flexparser python3-fonttools python3-fs python3-h5py python3-h5py-serial python3-hdf5plugin python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-mrcfile python3-natsort python3-numpy python3-nxmx python3-opengl python3-ordered-set python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pkg-resources python3-platformdirs python3-procrunner python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tqdm python3-typeguard python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wxgtk4.0 python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-tk readline-common rpcsvc-proto shared-mime-info sphinx-rtd-theme-common systemd systemd-sysv tk8.6-blt2.5 unicode-data x11-common xkb-data zlib1g-dev 0 upgraded, 0 newly installed, 342 to remove and 0 not upgraded. After this operation, 1743 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54123 files and directories currently installed.) Removing python3-cctbx (2024.10+ds2+~3.22.1+ds1-2) ... Removing python3-wxgtk4.0 (4.2.2+dfsg-1+b1) ... Removing libwxgtk-gl3.2-1t64:amd64 (3.2.6+dfsg-2) ... Removing libwxgtk3.2-1t64:amd64 (3.2.6+dfsg-2) ... Removing libgtk-3-0t64:amd64 (3.24.43-4) ... Removing libgtk-3-common (3.24.43-4) ... Removing dconf-gsettings-backend:amd64 (0.40.0-4+b3) ... Removing dconf-service (0.40.0-4+b3) ... Removing dbus-user-session (1.14.10-6) ... Removing libpam-systemd:amd64 (257~rc1-4) ... Removing dbus (1.14.10-6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-system-bus-common (1.14.10-6) ... Removing adduser (3.137) ... Removing adwaita-icon-theme (47.0-2) ... Removing libatk-bridge2.0-0t64:amd64 (2.54.0-1) ... Removing libatk1.0-0t64:amd64 (2.54.0-1) ... Removing at-spi2-common (2.54.0-1) ... Removing python3-matplotlib (3.8.3-3+b1) ... Removing python3-pil.imagetk:amd64 (10.4.0-1+b1) ... Removing python3-pil:amd64 (10.4.0-1+b1) ... Removing python3-tk:amd64 (3.12.7-1) ... Removing blt (2.5.3+dfsg-7) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing python3-certifi (2024.8.30+dfsg-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing dbus-daemon (1.14.10-6) ... Removing dbus-bin (1.14.10-6) ... Removing dbus-session-bus-common (1.14.10-6) ... Removing python3-pymol (3.0.0+dfsg-1) ... Removing python3-pyqt5.qtopengl (5.15.11+dfsg-1+b1) ... Removing python3-pyqt5 (5.15.11+dfsg-1+b1) ... Removing libqt5help5:amd64 (5.15.15-2) ... Removing libqt5designer5:amd64 (5.15.15-2) ... Removing libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... Removing libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... Removing libpango-1.0-0:amd64 (1.54.0+ds-3) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing python3.13-tk (3.13.0-2) ... Removing libcairo-gobject2:amd64 (1.18.2-2) ... Removing libcairo2:amd64 (1.18.2-2) ... Removing python-matplotlib-data (3.8.3-3) ... Removing python3-mrcfile (1.5.3-3) ... Removing sphinx-rtd-theme-common (3.0.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-lyx (2.4.2.1-1) ... Removing gtk-update-icon-cache (4.16.5+ds-2) ... Removing hicolor-icon-theme (0.18-1) ... Removing libnetcdf19t64:amd64 (1:4.9.2-7) ... Removing python3-hdf5plugin (4.0.1-3) ... Removing libcctbx-dev (2024.10+ds2+~3.22.1+ds1-2) ... Removing libann-cctbx-dev (1.1.2+doc-9+b1) ... Removing libcctbx0 (2024.10+ds2+~3.22.1+ds1-2) ... Removing libann-cctbx0 (1.1.2+doc-9+b1) ... Removing libantlr3c-3.4-0:amd64 (3.4+dfsg-4+b2) ... Removing systemd-sysv (257~rc1-4) ... Removing systemd (257~rc1-4) ... Removing libapparmor1:amd64 (3.1.7-1+b3) ... Removing libboost-python-dev (1.83.0.2+b2) ... Removing libboost-python1.83-dev (1.83.0-3.2+b1) ... Removing libboost1.83-dev:amd64 (1.83.0-3.2+b1) ... Removing libstdc++-14-dev:amd64 (14.2.0-8) ... Removing libgcc-14-dev:amd64 (14.2.0-8) ... Removing libasan8:amd64 (14.2.0-8) ... Removing libqt5xml5t64:amd64 (5.15.15+dfsg-2) ... Removing libqt5printsupport5t64:amd64 (5.15.15+dfsg-2) ... Removing libqt5test5t64:amd64 (5.15.15+dfsg-2) ... Removing libnotify4:amd64 (0.8.3-1+b2) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1+b1) ... Removing libatspi2.0-0t64:amd64 (2.54.0-1) ... Removing libcups2t64:amd64 (2.4.10-2) ... Removing libavahi-client3:amd64 (0.8-13+b3) ... Removing libavahi-common3:amd64 (0.8-13+b3) ... Removing libavahi-common-data:amd64 (0.8-13+b3) ... Removing python3-nxmx (0.0.3-3) ... Removing python3-contourpy (1.3.0-2+b1) ... Removing libboost-numpy1.83.0 (1.83.0-3.2+b1) ... Removing libboost-python1.83.0 (1.83.0-3.2+b1) ... Removing libboost-thread1.83.0:amd64 (1.83.0-3.2+b1) ... Removing libboost-timer1.83.0:amd64 (1.83.0-3.2+b1) ... Removing libraqm0:amd64 (0.10.1-1+b2) ... Removing libwxbase3.2-1t64:amd64 (3.2.6+dfsg-2) ... Removing python3-dev (3.12.7-1) ... Removing python3.12-dev (3.12.7-3) ... Removing libpython3-dev:amd64 (3.12.7-1) ... Removing libpython3.12-dev:amd64 (3.12.7-3) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libexpat1-dev:amd64 (2.6.4-1) ... Removing libc6-dev:amd64 (2.40-3) ... Removing libc-dev-bin (2.40-3) ... Removing python3-pycbf (0.9.7+dfsg1-4+b1) ... Removing libcbf1t64:amd64 (0.9.7+dfsg1-4+b1) ... Removing libccp4-dev:amd64 (8.0.0-4) ... Removing libccp4f0t64:amd64 (8.0.0-4) ... Removing libccp4c0t64:amd64 (8.0.0-4) ... Removing libccp4-data (8.0.0-4) ... Removing libcloudproviders0:amd64 (0.3.6-1+b1) ... Removing libcolord2:amd64 (1.4.7-1+b2) ... Removing libcrypt-dev:amd64 (1:4.4.36-5) ... Removing libcurl3t64-gnutls:amd64 (8.11.0-1) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libdconf1:amd64 (0.40.0-4+b3) ... Removing libtiff6:amd64 (4.5.1+git230720-5) ... Removing libdeflate0:amd64 (1.22-1) ... Removing python3-opengl (3.1.7+dfsg-1) ... Removing libepoxy0:amd64 (1.5.10-2) ... Removing python3-tqdm (4.67.0-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing libpython3.12t64:amd64 (3.12.7-3) ... Removing libfribidi0:amd64 (1.0.15-1) ... Removing libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... Removing libglew2.2:amd64 (2.2.0-4+b2) ... Removing libglu1-mesa:amd64 (9.0.2-1.1+b2) ... Removing libopengl0:amd64 (1.7.0-1+b2) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgomp1:amd64 (14.2.0-8) ... Removing libhwasan0:amd64 (14.2.0-8) ... Removing libitm1:amd64 (14.2.0-8) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjs-sphinxdoc (7.4.7-4) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing liblsan0:amd64 (14.2.0-8) ... Removing libssm2:amd64 (1.4.0-2+b3) ... Removing libmmdb2-0:amd64 (2.0.22-1+b2) ... Removing procps (2:4.0.4-6) ... Removing libnghttp3-9:amd64 (1.4.0-1+b1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Removing libngtcp2-16:amd64 (1.6.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b4) ... Removing libpcre2-32-0:amd64 (10.44-2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libproc2-0:amd64 (2:4.0.4-6) ... Removing libqhull-r8.0:amd64 (2020.2-6+b2) ... Removing libqt5opengl5t64:amd64 (5.15.15+dfsg-2) ... Removing libqt5sql5t64:amd64 (5.15.15+dfsg-2) ... Removing libquadmath0:amd64 (14.2.0-8) ... Removing libwebpmux3:amd64 (1.4.0-0.1+b1) ... Removing libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Removing libwebp7:amd64 (1.4.0-0.1+b1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Removing libsystemd-shared:amd64 (257~rc1-4) ... Removing python3.12-tk (3.12.7-3) ... Removing libthai-data (0.1.29-2) ... Removing libtsan2:amd64 (14.2.0-8) ... Removing libubsan1:amd64 (14.2.0-8) ... Removing libwayland-cursor0:amd64 (1.23.0-1+b1) ... Removing libwayland-egl1:amd64 (1.23.0-1+b1) ... Removing libxtst6:amd64 (2:1.2.3-1.1+b2) ... Removing libxcomposite1:amd64 (1:0.4.6-1) ... Removing libxcursor1:amd64 (1:1.2.2-1+b1) ... Removing libxdamage1:amd64 (1:1.1.6-1+b2) ... Removing libxi6:amd64 (2:1.8.2-1) ... Removing libxinerama1:amd64 (2:1.1.4-3+b2) ... Removing libxrandr2:amd64 (2:1.5.4-1+b1) ... Removing linux-libc-dev (6.11.7-1) ... Removing openssl (3.3.2-2) ... Removing pymol-data (3.0.0+dfsg-1) ... Removing python3-charset-normalizer (3.4.0-1+b1) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-pint (0.24.4-1) ... Removing python3-flexcache (0.3-2) ... Removing python3-flexparser (0.4-1) ... Removing python3-idna (3.8-2) ... Removing python3-kiwisolver (1.4.7-2+b1) ... Removing python3-natsort (8.0.2-2) ... Removing python3-ordered-set (4.1.0-1) ... Removing python3-packaging (24.1-1) ... Removing python3-platformdirs (4.3.6-1) ... Removing python3-procrunner (2.3.3-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-pyqt5.sip (12.15.0-1+b1) ... Removing python3-urllib3 (2.0.7-2) ... Removing rpcsvc-proto (1.4.3-1) ... Removing libtk8.6:amd64 (8.6.15-1) ... Removing libxft2:amd64 (2.3.6-1+b2) ... Removing python3-h5py (3.11.0-8) ... Removing python3-h5py-serial (3.11.0-8) ... Removing libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing libqt5widgets5t64:amd64 (5.15.15+dfsg-2) ... Removing libcurl4t64:amd64 (8.11.0-1) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Removing liblzf1:amd64 (3.6-4+b2) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtcl8.6:amd64 (8.6.15+dfsg-2) ... Removing libxss1:amd64 (1:1.2.3-1+b2) ... Removing libqt5gui5t64:amd64 (5.15.15+dfsg-2) ... Removing fontconfig (2.15.0-1.1+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1+b1) ... Removing fontconfig-config (2.15.0-1.1+b1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libinput10:amd64 (1.26.2-1) ... Removing libharfbuzz0b:amd64 (10.0.1-1) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b6) ... Removing libqt5network5t64:amd64 (5.15.15+dfsg-2) ... Removing libqt5dbus5t64:amd64 (5.15.15+dfsg-2) ... Removing libdbus-1-3:amd64 (1.14.10-6) ... Removing libegl1:amd64 (1.7.0-1+b2) ... Removing libegl-mesa0:amd64 (24.2.7-1) ... Removing libgl1:amd64 (1.7.0-1+b2) ... Removing libglx0:amd64 (1.7.0-1+b2) ... Removing libglx-mesa0:amd64 (24.2.7-1) ... Removing libgl1-mesa-dri:amd64 (24.2.7-1) ... Removing libgbm1:amd64 (24.2.7-1) ... Removing libinput-bin (1.26.2-1) ... Removing libglvnd0:amd64 (1.7.0-1+b2) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libsm6:amd64 (2:1.2.4-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Removing libmd4c0:amd64 (0.5.2-2+b1) ... Removing libmtdev1t64:amd64 (1.1.6-1.2+b1) ... Removing libpng16-16t64:amd64 (1.6.44-2) ... Removing libvulkan1:amd64 (1.3.296.0-1) ... Removing libwayland-client0:amd64 (1.23.0-1+b1) ... Removing libwayland-server0:amd64 (1.23.0-1+b1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b3) ... Removing libxcb-icccm4:amd64 (0.4.2-1) ... Removing libxcb-render-util0:amd64 (0.3.9-1+b2) ... Removing libxcb-glx0:amd64 (1.17.0-2+b1) ... Removing libxcb-image0:amd64 (0.4.0-2+b2) ... Removing libxcb-keysyms1:amd64 (0.4.0-1+b3) ... Removing libxcb-randr0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb-shape0:amd64 (1.17.0-2+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-util1:amd64 (0.4.0-1+b2) ... Removing libxcb-xinerama0:amd64 (1.17.0-2+b1) ... Removing libxcb-xinput0:amd64 (1.17.0-2+b1) ... Removing libxkbcommon-x11-0:amd64 (1.7.0-1) ... Removing libxcb-xkb1:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b2) ... Removing libxfixes3:amd64 (1:6.0.0-2+b2) ... Removing libxkbcommon0:amd64 (1.7.0-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b2) ... Removing x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xkb-data (2.42-1) ... Removing libqt5core5t64:amd64 (5.15.15+dfsg-2) ... Removing shared-mime-info (2.4-5+b1) ... Removing libwacom9:amd64 (2.13.0-1) ... Removing libdouble-conversion3:amd64 (3.3.0-1+b2) ... Removing mesa-libgallium:amd64 (24.2.7-1) ... Removing libdrm-amdgpu1:amd64 (2.4.123-1) ... Removing libdrm-intel1:amd64 (2.4.123-1) ... Removing libdrm-radeon1:amd64 (2.4.123-1) ... Removing libllvm19:amd64 (1:19.1.3-2) ... Removing libedit2:amd64 (3.1-20240808-1) ... Removing libelf1t64:amd64 (0.192-4) ... Removing libevdev2:amd64 (1.13.3+dfsg-1) ... Removing libglapi-mesa:amd64 (24.2.7-1) ... Removing libgudev-1.0-0:amd64 (238-5+b1) ... Removing libpciaccess0:amd64 (0.17-3+b2) ... Removing libpcre2-16-0:amd64 (10.44-2) ... Removing libsensors5:amd64 (1:3.6.0-10+b1) ... Removing libsensors-config (1:3.6.0-10) ... Removing libwacom-common (2.13.0-1) ... Removing libx11-xcb1:amd64 (2:1.8.10-2) ... Removing libxcb-dri2-0:amd64 (1.17.0-2+b1) ... Removing libxcb-dri3-0:amd64 (1.17.0-2+b1) ... Removing libxcb-present0:amd64 (1.17.0-2+b1) ... Removing libxcb-sync1:amd64 (1.17.0-2+b1) ... Removing libxcb-xfixes0:amd64 (1.17.0-2+b1) ... Removing libxshmfence1:amd64 (1.3-1+b2) ... Removing libz3-4:amd64 (4.13.3-1) ... Removing libglib2.0-0t64:amd64 (2.82.2-3) ... Removing libatomic1:amd64 (14.2.0-8) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libx11-6:amd64 (2:1.8.10-2) ... Removing libx11-data (2:1.8.10-2) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3+b2) ... Removing python3-fonttools (4.54.1-4+b1) ... Removing python3-scipy (1.13.1-5) ... Removing python3-numpy (1:1.26.4+ds-12) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Removing liblapack3:amd64 (3.12.0-3+b1) ... Removing libblas3:amd64 (3.12.0-3+b1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b3) ... Removing python3-fs (2.4.16-4) ... Removing python3-pkg-resources (75.2.0-1) ... Removing python3-lz4 (4.0.2+dfsg-1+b5) ... Removing python3-sympy (1.13.3-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.1-1) ... Removing libgfortran5:amd64 (14.2.0-8) ... Removing python3-lxml:amd64 (5.3.0-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1.1+b1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Removing libicu72:amd64 (72.1-5+b1) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-brotli (1.1.0-2+b6) ... Removing python3-decorator (5.1.1-5) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.5.0-1) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-six (1.16.0-7) ... Removing python3-typing-extensions (4.12.2-2) ... Removing python3-tz (2024.1-2) ... Removing unicode-data (15.1.0-1) ... Removing python3-ufolib2 (0.16.1+dfsg1-1) ... Removing python3-attr (24.2.0-1) ... Removing python3 (3.12.7-1) ... Removing python3.12 (3.12.7-3) ... Removing python3-minimal (3.12.7-1) ... Removing python3.12-minimal (3.12.7-3) ... Removing libexpat1:amd64 (2.6.4-1) ... Removing libpython3-stdlib:amd64 (3.12.7-1) ... Removing libpython3.12-stdlib:amd64 (3.12.7-3) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3+b3) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libncursesw6:amd64 (6.5-2+b1) ... Removing libpython3.12-minimal:amd64 (3.12.7-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-5) ... Processing triggers for libc-bin (2.40-3) ... 1m41.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'remove', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libboost-numpy1.83.0', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost-thread1.83.0:amd64', 'libboost-timer1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0t64:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmtdev1t64:amd64', 'libncursesw6:amd64', 'libnetcdf19t64:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libqhull-r8.0:amd64', 'libqt5core5t64:amd64', 'libqt5dbus5t64:amd64', 'libqt5designer5:amd64', 'libqt5gui5t64:amd64', 'libqt5help5:amd64', 'libqt5network5t64:amd64', 'libqt5opengl5t64:amd64', 'libqt5printsupport5t64:amd64', 'libqt5sql5t64:amd64', 'libqt5test5t64:amd64', 'libqt5widgets5t64:amd64', 'libqt5xml5t64:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssm2:amd64', 'libstdc++-14-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1t64:amd64', 'libwxgtk-gl3.2-1t64:amd64', 'libwxgtk3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'media-types', 'mesa-libgallium:amd64', 'netbase', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-flexcache', 'python3-flexparser', 'python3-fonttools', 'python3-fs', 'python3-h5py', 'python3-h5py-serial', 'python3-hdf5plugin', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-natsort', 'python3-numpy', 'python3-nxmx', 'python3-opengl', 'python3-ordered-set', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-platformdirs', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.12-tk', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64', 'python3-cctbx'] 1m41.9s INFO: Running scripts post_remove 1m41.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_remove_exceptions'] 1m41.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_remove_exceptions'] 1m41.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libboost-numpy1.83.0', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost-thread1.83.0:amd64', 'libboost-timer1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0t64:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmtdev1t64:amd64', 'libncursesw6:amd64', 'libnetcdf19t64:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libqhull-r8.0:amd64', 'libqt5core5t64:amd64', 'libqt5dbus5t64:amd64', 'libqt5designer5:amd64', 'libqt5gui5t64:amd64', 'libqt5help5:amd64', 'libqt5network5t64:amd64', 'libqt5opengl5t64:amd64', 'libqt5printsupport5t64:amd64', 'libqt5sql5t64:amd64', 'libqt5test5t64:amd64', 'libqt5widgets5t64:amd64', 'libqt5xml5t64:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssm2:amd64', 'libstdc++-14-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1t64:amd64', 'libwxgtk-gl3.2-1t64:amd64', 'libwxgtk3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'media-types', 'mesa-libgallium:amd64', 'netbase', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-flexcache', 'python3-flexparser', 'python3-fonttools', 'python3-fs', 'python3-h5py', 'python3-h5py-serial', 'python3-hdf5plugin', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-natsort', 'python3-numpy', 'python3-nxmx', 'python3-opengl', 'python3-ordered-set', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-platformdirs', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.12-tk', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64'] 1m42.2s DUMP: (Reading database ... 5236 files and directories currently installed.) Purging configuration files for adduser (3.137) ... Purging configuration files for adwaita-icon-theme (47.0-2) ... dpkg: warning: ignoring request to remove at-spi2-common which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for dbus (1.14.10-6) ... rmdir: failed to remove '/var/run/dbus': Directory not empty rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.14.10-6) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed Purging configuration files for dbus-user-session (1.14.10-6) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed Purging configuration files for fontconfig (2.15.0-1.1+b1) ... Purging configuration files for fontconfig-config (2.15.0-1.1+b1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libann-cctbx-dev which isn't installed dpkg: warning: ignoring request to remove libann-cctbx0 which isn't installed dpkg: warning: ignoring request to remove libantlr3c-3.4-0 which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0t64 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0t64 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libatspi2.0-0t64 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-numpy1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-python-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.83-dev which isn't installed dpkg: warning: ignoring request to remove libboost-python1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-thread1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-timer1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcbf1t64 which isn't installed dpkg: warning: ignoring request to remove libccp4-data which isn't installed dpkg: warning: ignoring request to remove libccp4-dev which isn't installed dpkg: warning: ignoring request to remove libccp4c0t64 which isn't installed dpkg: warning: ignoring request to remove libccp4f0t64 which isn't installed dpkg: warning: ignoring request to remove libcctbx-dev which isn't installed dpkg: warning: ignoring request to remove libcctbx0 which isn't installed dpkg: warning: ignoring request to remove libcloudproviders0 which isn't installed dpkg: warning: ignoring request to remove libcolord2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-5) ... dpkg: warning: ignoring request to remove libcups2t64 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove libevdev2 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1+b1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (24.2.7-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed dpkg: warning: ignoring request to remove libglew2.2 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.82.2-3) ... dpkg: warning: ignoring request to remove libglu1-mesa which isn't installed dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... Purging configuration files for libgtk-3-0t64:amd64 (3.24.43-4) ... Purging configuration files for libgtk-3-common (3.24.43-4) ... dpkg: warning: ignoring request to remove libgudev-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1t64 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100t64 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libinput-bin which isn't installed dpkg: warning: ignoring request to remove libinput10 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm19 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libmd4c0 which isn't installed dpkg: warning: ignoring request to remove libmmdb2-0 which isn't installed dpkg: warning: ignoring request to remove libmtdev1t64 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnetcdf19t64 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libnotify4 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopengl0 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpam-systemd which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-16-0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-32-0 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12-dev which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.7-3) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12t64 which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libqt5core5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5dbus5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5designer5 which isn't installed dpkg: warning: ignoring request to remove libqt5gui5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5help5 which isn't installed dpkg: warning: ignoring request to remove libqt5network5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5opengl5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5printsupport5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5sql5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5test5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5widgets5t64 which isn't installed dpkg: warning: ignoring request to remove libqt5xml5t64 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-10) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libssm2 which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libsystemd-shared which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwacom-common which isn't installed dpkg: warning: ignoring request to remove libwacom9 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libwxbase3.2-1t64 which isn't installed dpkg: warning: ignoring request to remove libwxgtk-gl3.2-1t64 which isn't installed dpkg: warning: ignoring request to remove libwxgtk3.2-1t64 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-icccm4 which isn't installed dpkg: warning: ignoring request to remove libxcb-image0 which isn't installed dpkg: warning: ignoring request to remove libxcb-keysyms1 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render-util0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-util1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinerama0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinput0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xkb1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon-x11-0 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove mesa-libgallium which isn't installed Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.3.2-2) ... Purging configuration files for procps (2:4.0.4-6) ... dpkg: warning: ignoring request to remove pymol-data which isn't installed Purging configuration files for python-matplotlib-data (3.8.3-3) ... Purging configuration files for python3 (3.12.7-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-flexcache which isn't installed dpkg: warning: ignoring request to remove python3-flexparser which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-hdf5plugin which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-mrcfile which isn't installed dpkg: warning: ignoring request to remove python3-natsort which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-nxmx which isn't installed dpkg: warning: ignoring request to remove python3-opengl which isn't installed dpkg: warning: ignoring request to remove python3-ordered-set which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pint which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-procrunner which isn't installed dpkg: warning: ignoring request to remove python3-pycbf which isn't installed dpkg: warning: ignoring request to remove python3-pymol which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyqt5 which isn't installed dpkg: warning: ignoring request to remove python3-pyqt5.qtopengl which isn't installed dpkg: warning: ignoring request to remove python3-pyqt5.sip which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed Purging configuration files for python3-sympy (1.13.3-1) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wxgtk4.0 which isn't installed dpkg: warning: ignoring request to remove python3.12 which isn't installed dpkg: warning: ignoring request to remove python3.12-dev which isn't installed Purging configuration files for python3.12-minimal (3.12.7-3) ... dpkg: warning: ignoring request to remove python3.12-tk which isn't installed dpkg: warning: ignoring request to remove python3.13-tk which isn't installed Purging configuration files for readline-common (8.2-5) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for shared-mime-info (2.4-5+b1) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed Purging configuration files for systemd (257~rc1-4) ... dpkg: warning: ignoring request to remove systemd-sysv which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for x11-common (1:7.7+23.1) ... dpkg: warning: ignoring request to remove xkb-data which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--purge', 'adduser', 'adwaita-icon-theme', 'at-spi2-common', 'blt', 'ca-certificates', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'libaec0:amd64', 'libann-cctbx-dev', 'libann-cctbx0', 'libantlr3c-3.4-0:amd64', 'libapparmor1:amd64', 'libasan8:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libboost-numpy1.83.0', 'libboost-python-dev', 'libboost-python1.83-dev', 'libboost-python1.83.0', 'libboost-thread1.83.0:amd64', 'libboost-timer1.83.0:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcbf1t64:amd64', 'libccp4-data', 'libccp4-dev:amd64', 'libccp4c0t64:amd64', 'libccp4f0t64:amd64', 'libcctbx-dev', 'libcctbx0', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgcc-14-dev:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglew2.2:amd64', 'libglib2.0-0t64:amd64', 'libglu1-mesa:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm19:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd4c0:amd64', 'libmmdb2-0:amd64', 'libmtdev1t64:amd64', 'libncursesw6:amd64', 'libnetcdf19t64:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libopengl0:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libqhull-r8.0:amd64', 'libqt5core5t64:amd64', 'libqt5dbus5t64:amd64', 'libqt5designer5:amd64', 'libqt5gui5t64:amd64', 'libqt5help5:amd64', 'libqt5network5t64:amd64', 'libqt5opengl5t64:amd64', 'libqt5printsupport5t64:amd64', 'libqt5sql5t64:amd64', 'libqt5test5t64:amd64', 'libqt5widgets5t64:amd64', 'libqt5xml5t64:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssm2:amd64', 'libstdc++-14-dev:amd64', 'libsystemd-shared:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1t64:amd64', 'libwxgtk-gl3.2-1t64:amd64', 'libwxgtk3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libz3-4:amd64', 'linux-libc-dev', 'media-types', 'mesa-libgallium:amd64', 'netbase', 'openssl', 'procps', 'pymol-data', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-autocommand', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-flexcache', 'python3-flexparser', 'python3-fonttools', 'python3-fs', 'python3-h5py', 'python3-h5py-serial', 'python3-hdf5plugin', 'python3-idna', 'python3-inflect', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-mrcfile', 'python3-natsort', 'python3-numpy', 'python3-nxmx', 'python3-opengl', 'python3-ordered-set', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pint', 'python3-pkg-resources', 'python3-platformdirs', 'python3-procrunner', 'python3-pycbf', 'python3-pymol', 'python3-pyparsing', 'python3-pyqt5', 'python3-pyqt5.qtopengl', 'python3-pyqt5.sip', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tqdm', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wxgtk4.0', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.12-tk', 'python3.13-tk', 'readline-common', 'rpcsvc-proto', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'tk8.6-blt2.5', 'unicode-data', 'x11-common', 'xkb-data', 'zlib1g-dev:amd64'] 1m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--purge', 'python3-cctbx'] 1m42.2s DUMP: dpkg: warning: ignoring request to remove python3-cctbx which isn't installed 1m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--purge', 'python3-cctbx'] 1m42.2s INFO: Running scripts post_purge 1m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_purge_exceptions'] 1m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_purge_exceptions'] 1m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--purge', '--pending'] 1m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--purge', '--pending'] 1m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--remove', '--pending'] 1m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg', '--remove', '--pending'] 1m42.2s INFO: Running scripts post_test 1m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_test_exceptions'] 1m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'tmp/scripts/post_test_exceptions'] 1m42.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 1m42.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 1m42.7s ERROR: WARN: Broken symlinks: /etc/vconsole.conf -> default/keyboard /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf /etc/default/locale -> ../locale.conf 1m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-divert', '--list'] 1m42.8s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m42.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'dpkg-divert', '--list'] 1m42.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'clean'] 1m42.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwjp493_b', 'apt-get', 'clean'] 1m42.8s DEBUG: Recording chroot state 1m43.1s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/log/private/ not owned 1m43.1s INFO: PASS: Installation and purging test. 1m43.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/shm'] 1m43.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/shm'] 1m43.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/console'] 1m43.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/console'] 1m43.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/ptmx'] 1m43.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/ptmx'] 1m43.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/pts'] 1m43.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/dev/pts'] 1m43.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/proc'] 1m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpwjp493_b/proc'] 1m43.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 1m43.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwjp493_b'] 1m43.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpwjp493_b 1m43.6s INFO: PASS: All tests. 1m43.6s INFO: piuparts run ends. ret=0 End: 2024-11-14 22:06:02 GMT