Start: 2025-03-12 22:08:31 GMT
Package: r-bioc-mofa2
Version: 1.16.0+ds-3
Installed-Size: 3101
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-rhdf5, r-cran-dplyr, r-cran-tidyr, r-cran-reshape2, r-cran-pheatmap, r-cran-ggplot2, r-cran-rcolorbrewer, r-cran-cowplot, r-cran-ggrepel, r-cran-reticulate, r-bioc-hdf5array, r-cran-magrittr, r-cran-forcats, r-cran-corrplot, r-bioc-delayedarray, r-cran-rtsne, r-cran-uwot, r-cran-stringi
Suggests: r-cran-knitr, r-cran-testthat, r-cran-seurat, r-cran-seuratobject, r-cran-ggpubr, r-cran-foreach, r-cran-psych, r-bioc-multiassayexperiment, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-cran-ggrastr, r-cran-mvtnorm, r-cran-ggally, r-cran-rmarkdown, r-cran-data.table, r-cran-tidyverse, r-bioc-biocstyle, r-cran-matrix, r-cran-markdown, r-bioc-basilisk
Description: Multi-Omics Factor Analysis v2
Homepage: https://bioconductor.org/packages/MOFA2/
Description-md5: e5c1764a4b977570ef18127f6208c383
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-mofa2/r-bioc-mofa2_1.16.0+ds-3_all.deb
Size: 2465804
MD5sum: a74d913f08cfc7578fe16215c79efadc
SHA256: b002f58e7ac51af01d5bd81318667c96dd0c69b9c02b5ffb270e9cb8bfb086ca
Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-mofa2=1.16.0+ds-3
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.5.2~202503032318~1.5.1-8-g1db83cba starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-mofa2=1.16.0+ds-3
0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpkt826lgf
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpkt826lgf
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/proc']
0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/proc']
0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/pts']
0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/pts']
0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/ptmx']
0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/ptmx']
0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/console']
0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/console']
0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/shm']
0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/shm']
0m0.4s DEBUG: sources.list:
deb http://deb.debian.org/debian/ sid main
0m0.4s DEBUG: Created policy-rc.d and chmodded it.
0m0.4s DEBUG: Created resolv.conf.
0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpkt826lgf/tmp/scripts/
0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmpkt826lgf/tmp/scripts/
0m0.4s INFO: Running scripts post_chroot_unpack
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'update']
0m3.4s DUMP:
Get:1 http://deb.debian.org/debian sid InRelease [205 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7380 kB]
Fetched 17.7 MB in 2s (8598 kB/s)
Reading package lists...
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'update']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', '-yf', 'dist-upgrade']
0m5.9s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
The following packages will be upgraded:
apt debconf gcc-14-base libapt-pkg7.0 libgcc-s1 libstdc++6 sysvinit-utils
7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 3546 kB of archives.
After this operation, 1024 B of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-18 [49.4 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-18 [72.8 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-18 [713 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 2.9.33 [1109 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.33 [1447 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.14-4 [34.1 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.91 [121 kB]
Preconfiguring packages ...
Fetched 3546 kB in 0s (57.1 MB/s)
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Preparing to unpack .../gcc-14-base_14.2.0-18_amd64.deb ...
Unpacking gcc-14-base:amd64 (14.2.0-18) over (14.2.0-17) ...
Setting up gcc-14-base:amd64 (14.2.0-18) ...
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Preparing to unpack .../libgcc-s1_14.2.0-18_amd64.deb ...
Unpacking libgcc-s1:amd64 (14.2.0-18) over (14.2.0-17) ...
Setting up libgcc-s1:amd64 (14.2.0-18) ...
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Preparing to unpack .../libstdc++6_14.2.0-18_amd64.deb ...
Unpacking libstdc++6:amd64 (14.2.0-18) over (14.2.0-17) ...
Setting up libstdc++6:amd64 (14.2.0-18) ...
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Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ...
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Setting up libapt-pkg7.0:amd64 (2.9.33) ...
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Preparing to unpack .../sysvinit-utils_3.14-4_amd64.deb ...
Unpacking sysvinit-utils (3.14-4) over (3.14-3) ...
Setting up sysvinit-utils (3.14-4) ...
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Preparing to unpack .../debconf_1.5.91_all.deb ...
Unpacking debconf (1.5.91) over (1.5.90) ...
Setting up debconf (1.5.91) ...
Processing triggers for libc-bin (2.41-4) ...
0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', '-yf', 'dist-upgrade']
0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m6.8s DUMP:
ca2fd84f7060b310d83740510cdd7a14 -
0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m6.8s INFO: Running scripts post_setup
0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_disable_usr_share_doc']
0m6.9s DUMP:
dpkg-query: no packages found matching systemd-sysv
dpkg-query: no packages found matching sysv-rc
0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_disable_usr_share_doc']
0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_dummy_users']
0m7.6s DUMP:
useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999
useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999
useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999
useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999
useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999
useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999
useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999
useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999
0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_dummy_users']
0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_forbid_home']
0m7.6s DUMP:
Disabling /home
Adding 'local diversion of /home to /home.distrib'
0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_forbid_home']
0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_force-unsafe-io']
0m7.7s DUMP:
Enabling dpkg --force-unsafe-io.
Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
'/bin/sync' -> 'true'
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_force-unsafe-io']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_minimize']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_minimize']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_squeeze-backports']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_squeeze-backports']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_zz_backports']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_setup_zz_backports']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'clean']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'clean']
0m7.7s DEBUG: Recording chroot state
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m8.3s DUMP:
install ok installed apt apt 2.9.33
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.6
install ok installed bash bash 5.2.37-1.1
install ok installed bsdutils bsdutils 1:2.40.4-5
install ok installed coreutils coreutils 9.5-1+b1
install ok installed dash dash 0.5.12-12
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-2
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-18
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblkid1:amd64 libblkid1 2.40.4-5
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-4
install ok installed libc6:amd64 libc6 2.41-4
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-1
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-18
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.6.4-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.40.4-5
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1
install ok installed libselinux1:amd64 libselinux1 3.8-4
install ok installed libsemanage-common libsemanage-common 3.8-1
install ok installed libsemanage2:amd64 libsemanage2 3.8-1+b1
install ok installed libsepol2:amd64 libsepol2 3.8-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5
install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-18
install ok installed libsystemd0:amd64 libsystemd0 257.4-1
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libudev1:amd64 libudev1 257.4-1
install ok installed libuuid1:amd64 libuuid1 2.40.4-5
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2
install ok installed login login 1:4.16.0-2+really2.40.4-5
install ok installed login.defs login.defs 1:4.17.3-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.40.4-5
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1
install ok installed passwd passwd 1:4.17.3-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed sed sed 4.9-2
install ok installed sqv sqv 1.2.1-6+b1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025a-2
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.40.4-5
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-divert', '--list']
0m8.3s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-divert', '--list']
0m8.3s INFO: Running scripts is_testable
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/is_testable_uninstallable']
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/is_testable_uninstallable']
0m8.3s INFO: apt-cache does not know about any of the requested packages
0m8.3s INFO: Running scripts pre_test
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_test_exceptions']
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_test_exceptions']
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_test_root_password']
0m8.4s DUMP:
New password: Retype new password: passwd: password updated successfully
0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_test_root_password']
0m8.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
0m9.1s DEBUG: No broken symlinks as far as we can find.
0m9.1s INFO: Running scripts pre_install
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_database-server']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_database-server']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_exceptions']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_exceptions']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_extras']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_extras']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_foreign_architecture']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_foreign_architecture']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
0m9.8s DEBUG: No broken symlinks as far as we can find.
0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-cache', 'policy']
0m10.5s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-cache', 'policy']
0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-cache', 'policy', 'r-bioc-mofa2']
0m10.6s DUMP:
r-bioc-mofa2:
Installed: (none)
Candidate: 1.16.0+ds-3
Version table:
1.16.0+ds-3 500
500 http://deb.debian.org/debian sid/main amd64 Packages
0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-cache', 'policy', 'r-bioc-mofa2']
0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', '-y', 'install', 'r-bioc-mofa2=1.16.0+ds-3']
0m39.5s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono hdf5-helpers krb5-multidev libaec-dev libaec0 libasan8
libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev
libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev
libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 libevent-2.1-7t64
libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev
libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1
libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310
libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwasan0 libice6 libicu72
libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12
libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3
libldap-dev libldap2 liblerc4 liblsan0 libncursesw6 libnghttp2-14
libnghttp2-dev libnghttp3-9 libnghttp3-dev libp11-kit-dev libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev
libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib
libquadmath0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libsqlite3-0
libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6
libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl
libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6
libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler media-types
netbase nettle-dev openssl pkgconf pkgconf-bin procps python3
python3-minimal python3.13 python3.13-minimal r-base-core
r-bioc-biocgenerics r-bioc-delayedarray r-bioc-hdf5array r-bioc-iranges
r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib
r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray r-bioc-xvector
r-bioc-zlibbioc r-cran-abind r-cran-bh r-cran-cli r-cran-colorspace
r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-dplyr
r-cran-dqrng r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fnn
r-cran-forcats r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue
r-cran-gtable r-cran-here r-cran-irlba r-cran-isoband r-cran-jsonlite
r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
r-cran-munsell r-cran-nlme r-cran-pheatmap r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-purrr r-cran-r6
r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy
r-cran-rcppeigen r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2
r-cran-reticulate r-cran-rlang r-cran-rprojroot r-cran-rspectra r-cran-rtsne
r-cran-scales r-cran-sitmo r-cran-stringi r-cran-stringr r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-uwot r-cran-vctrs
r-cran-viridislite r-cran-withr readline-common rpcsvc-proto sensible-utils
ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
doc-base krb5-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev
libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
libboost-contract1.83-dev libboost-coroutine1.83-dev
libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
libboost-serialization1.83-dev libboost-stacktrace1.83-dev
libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
libc-devtools glibc-doc manpages-dev dpkg-dev libcurl4-doc libidn-dev
low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin
gnutls-doc krb5-user libhdf5-doc libnghttp2-doc p11-kit-doc libssl-doc
libstdc++-14-doc tcl8.6 tk8.6 python3-doc python3-tk python3-venv
python3.13-venv python3.13-doc binutils binfmt-support elpa-ess r-doc-info
| r-doc-pdf r-mathlib r-base-html r-bioc-biobase r-bioc-genomicranges
r-bioc-pwalign r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-runit r-bioc-biocparallel
r-bioc-genefilter r-bioc-summarizedexperiment r-cran-lobstr
r-bioc-delayedmatrixstats r-cran-knitr r-cran-rmarkdown r-bioc-biocstyle
r-bioc-experimenthub r-bioc-genomicfeatures r-bioc-singlecellexperiment
r-bioc-genomicalignments r-bioc-sparsematrixstats r-cran-testthat
r-cran-seurat r-cran-seuratobject r-cran-ggpubr r-cran-foreach r-cran-psych
r-bioc-multiassayexperiment r-cran-ggrastr r-cran-mvtnorm r-cran-ggally
r-cran-data.table r-cran-tidyverse r-cran-markdown r-bioc-basilisk
r-cran-bit64 r-cran-bench r-cran-mockery r-cran-tinytest r-bioc-shortread
r-bioc-graph r-bioc-biostrings r-cran-covr r-cran-fs r-cran-readr
r-cran-uuid r-cran-magick r-cran-sf r-cran-getopt r-cran-roxygen2
r-cran-inline r-cran-rcpparmadillo r-cran-devtools readline-doc
Recommended packages:
manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs
krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules
libtasn1-doc psmisc linux-sysctl-defaults r-recommended r-base-dev
r-doc-html r-cran-callr r-cran-covr r-cran-digest r-cran-htmltools
r-cran-htmlwidgets r-cran-knitr r-cran-processx r-cran-ps r-cran-rmarkdown
r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
r-cran-jpeg r-cran-viridis r-cran-seriation r-cran-cairo r-cran-gridgraphics
r-cran-magick r-cran-maps r-cran-patchwork r-cran-ragg r-cran-vdiffr
r-cran-venndiagram r-cran-bench r-cran-brio r-cran-decor r-cran-desc
r-cran-lobstr r-cran-mockery r-cran-progress r-cran-broom r-cran-dbi
r-cran-dbplyr r-cran-microbenchmark r-cran-rmysql r-cran-rpostgresql
r-cran-rsqlite libpcg-cpp-dev r-cran-unitizer r-cran-pkgload r-cran-hexbin
r-cran-hmisc r-cran-mapproj r-cran-multcomp r-cran-profvis r-cran-quantreg
r-cran-rpart r-cran-sf r-cran-svglite r-cran-xml2 r-cran-gridextra
r-cran-devtools r-cran-ggbeeswarm r-cran-readr r-cran-waldo r-cran-httr
r-cran-r.rsp r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown
r-cran-r.devices r-cran-bit64 r-cran-diagrammer r-cran-formattable
r-cran-lubridate r-cran-nanotime r-cran-palmerpenguins r-cran-survival
r-cran-units r-cran-doparallel r-cran-foreach r-cran-iterators
r-cran-itertools r-cran-tinytest r-cran-codetools r-cran-fs r-cran-usethis
r-cran-dichromat r-cran-hms r-cran-blob r-cran-evaluate r-cran-pkgbuild
r-cran-data.table r-cran-rcpphnsw r-cran-pkgdown r-cran-zeallot
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono hdf5-helpers krb5-multidev libaec-dev libaec0 libasan8
libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev
libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev
libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 libevent-2.1-7t64
libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev
libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1
libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310
libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwasan0 libice6 libicu72
libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12
libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3
libldap-dev libldap2 liblerc4 liblsan0 libncursesw6 libnghttp2-14
libnghttp2-dev libnghttp3-9 libnghttp3-dev libp11-kit-dev libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev
libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib
libquadmath0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libsqlite3-0
libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6
libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl
libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6
libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler media-types
netbase nettle-dev openssl pkgconf pkgconf-bin procps python3
python3-minimal python3.13 python3.13-minimal r-base-core
r-bioc-biocgenerics r-bioc-delayedarray r-bioc-hdf5array r-bioc-iranges
r-bioc-matrixgenerics r-bioc-mofa2 r-bioc-rhdf5 r-bioc-rhdf5filters
r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-bh r-cran-cli
r-cran-colorspace r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon
r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-fansi r-cran-farver
r-cran-fnn r-cran-forcats r-cran-generics r-cran-ggplot2 r-cran-ggrepel
r-cran-glue r-cran-gtable r-cran-here r-cran-irlba r-cran-isoband
r-cran-jsonlite r-cran-labeling r-cran-lattice r-cran-lifecycle
r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats
r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pheatmap r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-purrr
r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy
r-cran-rcppeigen r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2
r-cran-reticulate r-cran-rlang r-cran-rprojroot r-cran-rspectra r-cran-rtsne
r-cran-scales r-cran-sitmo r-cran-stringi r-cran-stringr r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-uwot r-cran-vctrs
r-cran-viridislite r-cran-withr readline-common rpcsvc-proto sensible-utils
ucf unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 247 newly installed, 0 to remove and 0 not upgraded.
Need to get 185 MB of archives.
After this operation, 624 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.4.1-1 [1427 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:22 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:23 http://deb.debian.org/debian sid/main amd64 ucf all 3.0050 [42.7 kB]
Get:24 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-4 [58.4 kB]
Get:25 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.17-1 [2526 kB]
Get:26 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB]
Get:27 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB]
Get:28 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-4 [1989 kB]
Get:29 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get:30 http://deb.debian.org/debian sid/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB]
Get:31 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:32 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1 [282 kB]
Get:33 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get:34 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:35 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:36 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.1 [318 kB]
Get:37 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.1 [391 kB]
Get:38 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.1 [463 kB]
Get:39 http://deb.debian.org/debian sid/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB]
Get:40 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get:41 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get:42 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get:43 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get:44 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get:45 http://deb.debian.org/debian sid/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB]
Get:46 http://deb.debian.org/debian sid/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB]
Get:47 http://deb.debian.org/debian sid/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB]
Get:48 http://deb.debian.org/debian sid/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB]
Get:49 http://deb.debian.org/debian sid/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB]
Get:50 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB]
Get:51 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B]
Get:52 http://deb.debian.org/debian sid/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB]
Get:53 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-18 [2727 kB]
Get:54 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-18 [9300 B]
Get:55 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get:56 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB]
Get:57 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB]
Get:58 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-18 [137 kB]
Get:59 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-18 [26.0 kB]
Get:60 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-18 [1205 kB]
Get:61 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-18 [2460 kB]
Get:62 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-18 [1074 kB]
Get:63 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-18 [1488 kB]
Get:64 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-18 [145 kB]
Get:65 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-18 [2674 kB]
Get:66 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-18 [2375 kB]
Get:67 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-4.1+b1 [10.6 MB]
Get:68 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B]
Get:69 http://deb.debian.org/debian sid/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB]
Get:70 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get:71 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get:72 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get:73 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get:74 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get:75 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get:76 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get:77 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get:78 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get:79 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB]
Get:80 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get:81 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get:82 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-1 [109 kB]
Get:83 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:84 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:85 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get:86 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:87 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:88 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:89 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:90 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:91 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:92 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:93 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:94 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB]
Get:95 http://deb.debian.org/debian sid/main amd64 libidn2-dev amd64 2.3.8-1 [102 kB]
Get:96 http://deb.debian.org/debian sid/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB]
Get:97 http://deb.debian.org/debian sid/main amd64 libldap-dev amd64 2.6.9+dfsg-2 [311 kB]
Get:98 http://deb.debian.org/debian sid/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get:99 http://deb.debian.org/debian sid/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get:100 http://deb.debian.org/debian sid/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get:101 http://deb.debian.org/debian sid/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB]
Get:102 http://deb.debian.org/debian sid/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB]
Get:103 http://deb.debian.org/debian sid/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB]
Get:104 http://deb.debian.org/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB]
Get:105 http://deb.debian.org/debian sid/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB]
Get:106 http://deb.debian.org/debian sid/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB]
Get:107 http://deb.debian.org/debian sid/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB]
Get:108 http://deb.debian.org/debian sid/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB]
Get:109 http://deb.debian.org/debian sid/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB]
Get:110 http://deb.debian.org/debian sid/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB]
Get:111 http://deb.debian.org/debian sid/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB]
Get:112 http://deb.debian.org/debian sid/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB]
Get:113 http://deb.debian.org/debian sid/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB]
Get:114 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get:115 http://deb.debian.org/debian sid/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB]
Get:116 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.4.1-1 [2787 kB]
Get:117 http://deb.debian.org/debian sid/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB]
Get:118 http://deb.debian.org/debian sid/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB]
Get:119 http://deb.debian.org/debian sid/main amd64 libcurl4-openssl-dev amd64 8.12.1-3 [483 kB]
Get:120 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get:121 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get:122 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get:123 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-18 [836 kB]
Get:124 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1514 kB]
Get:125 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get:126 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB]
Get:127 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB]
Get:128 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB]
Get:129 http://deb.debian.org/debian sid/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB]
Get:130 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB]
Get:131 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB]
Get:132 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB]
Get:133 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get:134 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB]
Get:135 http://deb.debian.org/debian sid/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB]
Get:136 http://deb.debian.org/debian sid/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB]
Get:137 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB]
Get:138 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get:139 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get:140 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get:141 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get:142 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get:143 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:144 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get:145 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.56.1-1 [226 kB]
Get:146 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [55.3 kB]
Get:147 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [35.8 kB]
Get:148 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b1 [16.6 kB]
Get:149 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b1 [16.4 kB]
Get:150 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get:151 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB]
Get:152 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get:153 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get:154 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get:155 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:156 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get:157 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get:158 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get:159 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get:160 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get:161 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB]
Get:162 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB]
Get:163 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get:164 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.3-1 [28.3 MB]
Get:165 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.20-2 [103 kB]
Get:166 http://deb.debian.org/debian sid/main amd64 littler all 0.3.20-2 [16.0 kB]
Get:167 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB]
Get:168 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB]
Get:169 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB]
Get:170 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB]
Get:171 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.18.1-1 [449 kB]
Get:172 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB]
Get:173 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.40.1-2 [2309 kB]
Get:174 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB]
Get:175 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-1 [165 kB]
Get:176 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [702 kB]
Get:177 http://deb.debian.org/debian sid/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B]
Get:178 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
Get:179 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1372 kB]
Get:180 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2076 kB]
Get:181 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2 [104 kB]
Get:182 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5filters amd64 1.18.0+dfsg-2 [139 kB]
Get:183 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1 [865 kB]
Get:184 http://deb.debian.org/debian sid/main amd64 r-bioc-hdf5array amd64 1.34.0-2 [8788 kB]
Get:185 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB]
Get:186 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB]
Get:187 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB]
Get:188 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.5-1 [1712 kB]
Get:189 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:190 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB]
Get:191 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB]
Get:192 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB]
Get:193 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
Get:194 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-1 [106 kB]
Get:195 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.6-1 [629 kB]
Get:196 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:197 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB]
Get:198 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get:199 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB]
Get:200 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB]
Get:201 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.0.4-1 [556 kB]
Get:202 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.4-1 [895 kB]
Get:203 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB]
Get:204 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB]
Get:205 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB]
Get:206 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB]
Get:207 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.14-1 [2080 kB]
Get:208 http://deb.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
Get:209 http://deb.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB]
Get:210 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:211 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB]
Get:212 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB]
Get:213 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB]
Get:214 http://deb.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.1-1 [237 kB]
Get:215 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB]
Get:216 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB]
Get:217 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB]
Get:218 http://deb.debian.org/debian sid/main amd64 r-cran-pheatmap all 1.0.12-2 [77.9 kB]
Get:219 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB]
Get:220 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB]
Get:221 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.167-1 [2331 kB]
Get:222 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB]
Get:223 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB]
Get:224 http://deb.debian.org/debian sid/main amd64 r-cran-cowplot all 1.1.3+dfsg-1 [638 kB]
Get:225 http://deb.debian.org/debian sid/main amd64 r-cran-ggrepel amd64 0.9.6-1 [265 kB]
Get:226 http://deb.debian.org/debian sid/main amd64 r-cran-rcpptoml amd64 0.2.3+dfsg-1 [114 kB]
Get:227 http://deb.debian.org/debian sid/main amd64 r-cran-rprojroot all 2.0.4-2 [125 kB]
Get:228 http://deb.debian.org/debian sid/main amd64 r-cran-here all 1.0.1-2 [48.7 kB]
Get:229 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB]
Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB]
Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB]
Get:232 http://deb.debian.org/debian sid/main amd64 r-cran-reticulate amd64 1.41.0+dfsg-1 [1567 kB]
Get:233 http://deb.debian.org/debian sid/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB]
Get:234 http://deb.debian.org/debian sid/main amd64 r-cran-forcats all 1.0.0-1 [413 kB]
Get:235 http://deb.debian.org/debian sid/main amd64 r-cran-corrplot all 0.95-1 [135 kB]
Get:236 http://deb.debian.org/debian sid/main amd64 r-cran-rtsne amd64 0.17-1 [105 kB]
Get:237 http://deb.debian.org/debian sid/main amd64 r-cran-fnn amd64 1.1.4.1-1 [125 kB]
Get:238 http://deb.debian.org/debian sid/main amd64 r-cran-irlba amd64 2.3.5.1-4 [296 kB]
Get:239 http://deb.debian.org/debian sid/main amd64 r-cran-rcppannoy amd64 0.0.22-1 [227 kB]
Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1411 kB]
Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-rspectra amd64 0.16-2-1 [427 kB]
Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B]
Get:243 http://deb.debian.org/debian sid/main amd64 r-cran-sitmo amd64 2.0.2-1+b1 [130 kB]
Get:244 http://deb.debian.org/debian sid/main amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [133 kB]
Get:245 http://deb.debian.org/debian sid/main amd64 r-cran-rcppprogress all 0.4.2-2 [21.8 kB]
Get:246 http://deb.debian.org/debian sid/main amd64 r-cran-uwot amd64 0.2.3-1 [970 kB]
Get:247 http://deb.debian.org/debian sid/main amd64 r-bioc-mofa2 all 1.16.0+ds-3 [2466 kB]
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Setting up r-cran-viridislite (0.4.2-2) ...
Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ...
Setting up r-cran-r6 (2.6.1-1) ...
Setting up r-cran-pkgkitten (0.2.4-1) ...
Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-3) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up krb5-multidev:amd64 (1.21.3-4) ...
Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ...
Setting up r-cran-littler (0.3.20-2) ...
Setting up r-cran-bh (1.84.0-1) ...
Setting up r-cran-rcpp (1.0.14-1) ...
Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
Setting up r-bioc-biocgenerics (0.52.0-2) ...
Setting up r-cran-rlang (1.1.5-1) ...
Setting up r-cran-matrixstats (1.5.0-1) ...
Setting up littler (0.3.20-2) ...
Setting up r-bioc-matrixgenerics (1.18.1-1) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-abind (1.4-8-1) ...
Setting up r-cran-fansi (1.0.6-1) ...
Setting up r-cran-mass (7.3-65-1) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-cli (3.6.4-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-rprojroot (2.0.4-2) ...
Setting up r-cran-fnn (1.1.4.1-1) ...
Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Setting up r-cran-png (0.1-8-1+b1) ...
Setting up libkrb5-dev:amd64 (1.21.3-4) ...
Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
Setting up r-cran-corrplot (0.95-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
Setting up r-cran-stringi (1.8.4-1) ...
Setting up libcurl4-openssl-dev:amd64 (8.12.1-3) ...
Setting up r-cran-cpp11 (0.5.2-1) ...
Setting up r-cran-sitmo (2.0.2-1+b1) ...
Setting up r-cran-plyr (1.8.9-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
Setting up r-cran-isoband (0.2.7-1) ...
Setting up r-cran-gtable (0.3.6+dfsg-1) ...
Setting up r-cran-matrix (1.7-3-1) ...
Setting up r-cran-here (1.0.1-2) ...
Setting up r-cran-irlba (2.3.5.1-4) ...
Setting up r-cran-rcpptoml (0.2.3+dfsg-1) ...
Setting up r-cran-mgcv (1.9-1-1) ...
Setting up r-cran-rtsne (0.17-1) ...
Setting up r-bioc-iranges (2.40.1-2) ...
Setting up r-cran-dqrng (0.3.2+dfsg-1) ...
Setting up r-cran-reticulate (1.41.0+dfsg-1) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
Setting up r-cran-pillar (1.10.1+dfsg-1) ...
Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-rcppannoy (0.0.22-1) ...
Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ...
Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
Setting up r-cran-stringr (1.5.1-1) ...
Setting up r-cran-munsell (0.5.1-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-3) ...
Setting up r-cran-forcats (1.0.0-1) ...
Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up libhdf5-dev (1.14.5+repack-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up r-cran-scales (1.3.0-1) ...
Setting up r-cran-purrr (1.0.4-1) ...
Setting up r-bioc-xvector (0.46.0-2) ...
Setting up r-cran-dplyr (1.1.4-4) ...
Setting up r-cran-rspectra (0.16-2-1) ...
Setting up r-cran-uwot (0.2.3-1) ...
Setting up r-cran-pheatmap (1.0.12-2) ...
Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
Setting up r-bioc-rhdf5lib (1.28.0+dfsg-2) ...
Setting up r-bioc-rhdf5filters (1.18.0+dfsg-2) ...
Setting up r-cran-ggrepel (0.9.6-1) ...
Setting up r-cran-tidyr (1.3.1-1) ...
Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
Setting up r-cran-cowplot (1.1.3+dfsg-1) ...
Setting up r-bioc-rhdf5 (2.50.2+dfsg-1) ...
Setting up r-bioc-hdf5array (1.34.0-2) ...
Setting up r-bioc-mofa2 (1.16.0+ds-3) ...
Processing triggers for libc-bin (2.41-4) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', '-y', 'install', 'r-bioc-mofa2=1.16.0+ds-3']
0m39.5s INFO: Running scripts post_install
0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_install_exceptions']
0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_install_exceptions']
0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'systemd-tmpfiles', '--cat-config']
0m39.5s DUMP:
chroot: failed to run command 'systemd-tmpfiles': No such file or directory
0m39.5s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'systemd-tmpfiles', '--cat-config']
0m39.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
0m41.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
0m43.9s ERROR: WARN: Broken symlinks:
/usr/share/doc/r-base-core/NEWS.gz -> changelog.gz (r-base-core)
/usr/share/doc/unzip/changelog.gz -> History.600.gz (unzip)
/usr/share/doc/zip/changelog.gz -> CHANGES.gz (zip)
/usr/share/doc/libhdf5-dev/RELEASE.txt.gz -> changelog.gz (libhdf5-dev)
/usr/share/doc/libhdf5-hl-cpp-310/RELEASE.txt.gz -> changelog.gz (libhdf5-hl-cpp-310:amd64)
/usr/share/doc/libhdf5-hl-fortran-310/RELEASE.txt.gz -> changelog.gz (libhdf5-hl-fortran-310:amd64)
/usr/share/doc/libhdf5-hl-310/RELEASE.txt.gz -> changelog.gz (libhdf5-hl-310:amd64)
/usr/share/doc/libhdf5-fortran-310/RELEASE.txt.gz -> changelog.gz (libhdf5-fortran-310:amd64)
/usr/share/doc/libhdf5-cpp-310/RELEASE.txt.gz -> changelog.gz (libhdf5-cpp-310:amd64)
/usr/share/doc/libhdf5-310/RELEASE.txt.gz -> changelog.gz (libhdf5-310:amd64)
/usr/share/doc/hdf5-helpers/RELEASE.txt.gz -> changelog.gz (hdf5-helpers)
/usr/share/doc/python3.13/python-policy.txt.gz -> ../python3/python-policy.txt.gz (python3)
/usr/share/doc/python3.13/changelog.gz -> NEWS.gz (python3.13)
0m46.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', '-ac', '--ignore-obsolete']
0m50.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', '-ac', '--ignore-obsolete']
0m50.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m50.0s DUMP:
0.15.6
0m50.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m50.0s INFO: Running adequate version 0.15.6 now.
0m50.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'r-bioc-mofa2']
0m50.1s DUMP:
r-bioc-mofa2: py-file-not-bytecompiled /usr/lib/R/site-library/MOFA2/scripts/template_script.py
r-bioc-mofa2: py-file-not-bytecompiled /usr/lib/R/site-library/MOFA2/scripts/template_script_dataframe.py
r-bioc-mofa2: py-file-not-bytecompiled /usr/lib/R/site-library/MOFA2/scripts/template_script_matrix.py
0m50.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'r-bioc-mofa2']
0m50.1s ERROR: WARN: Inadequate results from running adequate!
r-bioc-mofa2: py-file-not-bytecompiled /usr/lib/R/site-library/MOFA2/scripts/template_script.py
r-bioc-mofa2: py-file-not-bytecompiled /usr/lib/R/site-library/MOFA2/scripts/template_script_dataframe.py
r-bioc-mofa2: py-file-not-bytecompiled /usr/lib/R/site-library/MOFA2/scripts/template_script_matrix.py
0m50.1s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled
0m50.1s INFO: Running scripts pre_remove
0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_exceptions']
0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/pre_remove_exceptions']
0m56.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m56.1s DUMP:
install ok installed apt apt 2.9.33
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.6
install ok installed bash bash 5.2.37-1.1
install ok installed bsdutils bsdutils 1:2.40.4-5
install ok installed ca-certificates ca-certificates 20241223
install ok installed comerr-dev:amd64 comerr-dev 2.1-1.47.2-1
install ok installed coreutils coreutils 9.5-1+b1
install ok installed dash dash 0.5.12-12
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-2
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed fontconfig fontconfig 2.15.0-2.1
install ok installed fontconfig-config fontconfig-config 2.15.0-2.1
install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8
install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-18
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hdf5-helpers hdf5-helpers 1.14.5+repack-3
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed krb5-multidev:amd64 krb5-multidev 1.21.3-4
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libaec-dev:amd64 libaec-dev 1.1.3-1+b1
install ok installed libaec0:amd64 libaec0 1.1.3-1+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33
install ok installed libasan8:amd64 libasan8 14.2.0-18
install ok installed libatomic1:amd64 libatomic1 14.2.0-18
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblas3:amd64 libblas3 3.12.1-2
install ok installed libblkid1:amd64 libblkid1 2.40.4-5
install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b2
install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2
install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4.1+b1
install ok installed libbrotli-dev:amd64 libbrotli-dev 1.1.0-2+b7
install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-4
install ok installed libc-dev-bin libc-dev-bin 2.41-4
install ok installed libc6:amd64 libc6 2.41-4
install ok installed libc6-dev:amd64 libc6-dev 2.41-4
install ok installed libcairo2:amd64 libcairo2 1.18.2-2
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-1
install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1
install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libcurl4-openssl-dev:amd64 libcurl4-openssl-dev 8.12.1-3
install ok installed libcurl4t64:amd64 libcurl4t64 8.12.1-3
install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277
install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1
install ok installed libevent-2.1-7t64:amd64 libevent-2.1-7t64 2.1.12-stable-10+b1
install ok installed libexpat1:amd64 libexpat1 2.6.4-1
install ok installed libffi8:amd64 libffi8 3.4.7-1
install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.1
install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1
install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1
install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-18
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-18
install ok installed libgfortran5:amd64 libgfortran5 14.2.0-18
install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.0-1
install ok installed libgmp-dev:amd64 libgmp-dev 2:6.3.0+dfsg-3
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.3.0+dfsg-3
install ok installed libgnutls-dane0t64:amd64 libgnutls-dane0t64 3.8.9-2
install ok installed libgnutls-openssl27t64:amd64 libgnutls-openssl27t64 3.8.9-2
install ok installed libgnutls28-dev:amd64 libgnutls28-dev 3.8.9-2
install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2
install ok installed libgomp1:amd64 libgomp1 14.2.0-18
install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1
install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-4
install ok installed libgssrpc4t64:amd64 libgssrpc4t64 1.21.3-4
install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1
install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3
install ok installed libhdf5-cpp-310:amd64 libhdf5-cpp-310 1.14.5+repack-3
install ok installed libhdf5-dev libhdf5-dev 1.14.5+repack-3
install ok installed libhdf5-fortran-310:amd64 libhdf5-fortran-310 1.14.5+repack-3
install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3
install ok installed libhdf5-hl-cpp-310:amd64 libhdf5-hl-cpp-310 1.14.5+repack-3
install ok installed libhdf5-hl-fortran-310:amd64 libhdf5-hl-fortran-310 1.14.5+repack-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed libhwasan0:amd64 libhwasan0 14.2.0-18
install ok installed libice6:amd64 libice6 2:1.1.1-1
install ok installed libicu72:amd64 libicu72 72.1-6
install ok installed libidn2-0:amd64 libidn2-0 2.3.8-1
install ok installed libidn2-dev:amd64 libidn2-dev 2.3.8-1
install ok installed libitm1:amd64 libitm1 14.2.0-18
install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2
install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.1.5-3.1
install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1
install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.1.5-3.1
install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-4
install ok installed libkadm5clnt-mit12:amd64 libkadm5clnt-mit12 1.21.3-4
install ok installed libkadm5srv-mit12:amd64 libkadm5srv-mit12 1.21.3-4
install ok installed libkdb5-10t64:amd64 libkdb5-10t64 1.21.3-4
install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4
install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-4
install ok installed libkrb5-dev:amd64 libkrb5-dev 1.21.3-4
install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-4
install ok installed liblapack3:amd64 liblapack3 3.12.1-2
install ok installed libldap-dev:amd64 libldap-dev 2.6.9+dfsg-2
install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2
install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5
install ok installed liblsan0:amd64 liblsan0 14.2.0-18
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.6.4-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.40.4-5
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1
install ok installed libnghttp2-dev:amd64 libnghttp2-dev 1.64.0-1
install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1
install ok installed libnghttp3-dev:amd64 libnghttp3-dev 1.8.0-1
install ok installed libp11-kit-dev:amd64 libp11-kit-dev 0.25.5-3
install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.1-1
install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.1-1
install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.1-1
install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b1
install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b1
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3
install ok installed libpkgconf3:amd64 libpkgconf3 1.8.1-4
install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1
install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7
install ok installed libpsl-dev:amd64 libpsl-dev 0.21.2-1.1+b1
install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1
install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2
install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-1
install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-1
install ok installed libquadmath0:amd64 libquadmath0 14.2.0-18
install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6
install ok installed librtmp-dev:amd64 librtmp-dev 2.4+20151223.gitfa8646d.1-2+b5
install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5
install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9
install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9
install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1
install ok installed libselinux1:amd64 libselinux1 3.8-4
install ok installed libsemanage-common libsemanage-common 3.8-1
install ok installed libsemanage2:amd64 libsemanage2 3.8-1+b1
install ok installed libsepol2:amd64 libsepol2 3.8-1
install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1
install ok installed libsm6:amd64 libsm6 2:1.2.4-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5
install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.1-1+b1
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssh2-1-dev:amd64 libssh2-1-dev 1.11.1-1
install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1
install ok installed libssl-dev:amd64 libssl-dev 3.4.1-1
install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1
install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-18
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-18
install ok installed libsystemd0:amd64 libsystemd0 257.4-1
install ok installed libsz2:amd64 libsz2 1.1.3-1+b1
install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2
install ok installed libtasn1-6-dev:amd64 libtasn1-6-dev 4.20.0-2
install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1
install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4
install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10
install ok installed libthai-data libthai-data 0.1.29-2
install ok installed libthai0:amd64 libthai0 0.1.29-2+b1
install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-5
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3
install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3+b1
install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1
install ok installed libtsan2:amd64 libtsan2 14.2.0-18
install ok installed libubsan1:amd64 libubsan1 14.2.0-18
install ok installed libudev1:amd64 libudev1 257.4-1
install ok installed libunbound8:amd64 libunbound8 1.22.0-1+b1
install ok installed libunistring5:amd64 libunistring5 1.3-1
install ok installed libuuid1:amd64 libuuid1 2.40.4-5
install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1
install ok installed libx11-6:amd64 libx11-6 2:1.8.10-2
install ok installed libx11-data libx11-data 2:1.8.10-2
install ok installed libxau6:amd64 libxau6 1:1.0.11-1
install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1
install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1
install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1
install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1
install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3
install ok installed libxft2:amd64 libxft2 2.3.6-1+b4
install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b4
install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3
install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd-dev:amd64 libzstd-dev 1.5.6+dfsg-2
install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2
install ok installed linux-libc-dev linux-libc-dev 6.12.17-1
install ok installed littler littler 0.3.20-2
install ok installed login login 1:4.16.0-2+really2.40.4-5
install ok installed login.defs login.defs 1:4.17.3-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed media-types media-types 13.0.0
install ok installed mount mount 2.40.4-5
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed netbase netbase 6.4
install ok installed nettle-dev:amd64 nettle-dev 3.10.1-1
install ok installed openssl openssl 3.4.1-1
install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1
install ok installed passwd passwd 1:4.17.3-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed pkgconf:amd64 pkgconf 1.8.1-4
install ok installed pkgconf-bin pkgconf-bin 1.8.1-4
install ok installed procps procps 2:4.0.4-7
install ok installed python3 python3 3.13.2-2
install ok installed python3-minimal python3-minimal 3.13.2-2
install ok installed python3.13 python3.13 3.13.2-1
install ok installed python3.13-minimal python3.13-minimal 3.13.2-1
install ok installed r-base-core r-base-core 4.4.3-1
install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2
install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.32.0+dfsg-2
install ok installed r-bioc-hdf5array r-bioc-hdf5array 1.34.0-2
install ok installed r-bioc-iranges r-bioc-iranges 2.40.1-2
install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.18.1-1
install ok installed r-bioc-mofa2 r-bioc-mofa2 1.16.0+ds-3
install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.50.2+dfsg-1
install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.18.0+dfsg-2
install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 1.28.0+dfsg-2
install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.6.0+dfsg-2
install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-2
install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.6.2+dfsg-1
install ok installed r-bioc-xvector r-bioc-xvector 0.46.0-2
install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.52.0+dfsg-2
install ok installed r-cran-abind r-cran-abind 1.4-8-1
install ok installed r-cran-bh r-cran-bh 1.84.0-1
install ok installed r-cran-cli r-cran-cli 3.6.4-1
install ok installed r-cran-colorspace r-cran-colorspace 2.1-1+dfsg-1
install ok installed r-cran-corrplot r-cran-corrplot 0.95-1
install ok installed r-cran-cowplot r-cran-cowplot 1.1.3+dfsg-1
install ok installed r-cran-cpp11 r-cran-cpp11 0.5.2-1
install ok installed r-cran-crayon r-cran-crayon 1.5.3-1
install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-4
install ok installed r-cran-dqrng r-cran-dqrng 0.3.2+dfsg-1
install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.2-2
install ok installed r-cran-fansi r-cran-fansi 1.0.6-1
install ok installed r-cran-farver r-cran-farver 2.1.2-1
install ok installed r-cran-fnn r-cran-fnn 1.1.4.1-1
install ok installed r-cran-forcats r-cran-forcats 1.0.0-1
install ok installed r-cran-generics r-cran-generics 0.1.3-1
install ok installed r-cran-ggplot2 r-cran-ggplot2 3.5.1+dfsg-1
install ok installed r-cran-ggrepel r-cran-ggrepel 0.9.6-1
install ok installed r-cran-glue r-cran-glue 1.8.0-1
install ok installed r-cran-gtable r-cran-gtable 0.3.6+dfsg-1
install ok installed r-cran-here r-cran-here 1.0.1-2
install ok installed r-cran-irlba r-cran-irlba 2.3.5.1-4
install ok installed r-cran-isoband r-cran-isoband 0.2.7-1
install ok installed r-cran-jsonlite r-cran-jsonlite 1.9.1+dfsg-1
install ok installed r-cran-labeling r-cran-labeling 0.4.3-1
install ok installed r-cran-lattice r-cran-lattice 0.22-6-1
install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1
install ok installed r-cran-littler r-cran-littler 0.3.20-2
install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1
install ok installed r-cran-mass r-cran-mass 7.3-65-1
install ok installed r-cran-matrix r-cran-matrix 1.7-3-1
install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-1
install ok installed r-cran-mgcv r-cran-mgcv 1.9-1-1
install ok installed r-cran-munsell r-cran-munsell 0.5.1-1
install ok installed r-cran-nlme r-cran-nlme 3.1.167-1
install ok installed r-cran-pheatmap r-cran-pheatmap 1.0.12-2
install ok installed r-cran-pillar r-cran-pillar 1.10.1+dfsg-1
install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2
install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1
install ok installed r-cran-plyr r-cran-plyr 1.8.9-1
install ok installed r-cran-png r-cran-png 0.1-8-1+b1
install ok installed r-cran-purrr r-cran-purrr 1.0.4-1
install ok installed r-cran-r6 r-cran-r6 2.6.1-1
install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.3-1
install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1
install ok installed r-cran-rcpp r-cran-rcpp 1.0.14-1
install ok installed r-cran-rcppannoy r-cran-rcppannoy 0.0.22-1
install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.4.0.2-1
install ok installed r-cran-rcppprogress r-cran-rcppprogress 0.4.2-2
install ok installed r-cran-rcpptoml r-cran-rcpptoml 0.2.3+dfsg-1
install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2
install ok installed r-cran-reticulate r-cran-reticulate 1.41.0+dfsg-1
install ok installed r-cran-rlang r-cran-rlang 1.1.5-1
install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.4-2
install ok installed r-cran-rspectra r-cran-rspectra 0.16-2-1
install ok installed r-cran-rtsne r-cran-rtsne 0.17-1
install ok installed r-cran-scales r-cran-scales 1.3.0-1
install ok installed r-cran-sitmo r-cran-sitmo 2.0.2-1+b1
install ok installed r-cran-stringi r-cran-stringi 1.8.4-1
install ok installed r-cran-stringr r-cran-stringr 1.5.1-1
install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-3
install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1
install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-1
install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1
install ok installed r-cran-uwot r-cran-uwot 0.2.3-1
install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1
install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2
install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1
install ok installed readline-common readline-common 8.2-6
install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1
install ok installed sed sed 4.9-2
install ok installed sensible-utils sensible-utils 0.0.24
install ok installed sqv sqv 1.2.1-6+b1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025a-2
install ok installed ucf ucf 3.0050
install ok installed unzip unzip 6.0-29
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.40.4-5
install ok installed x11-common x11-common 1:7.7+24
install ok installed xdg-utils xdg-utils 1.2.1-2
install ok installed zip zip 3.0-14
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1
0m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-bh', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fnn', 'r-cran-forcats', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gtable', 'r-cran-here', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcppeigen', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-scales', 'r-cran-sitmo', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-mofa2']
0m59.8s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono hdf5-helpers krb5-multidev libaec-dev libaec0 libasan8
libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev
libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev
libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 libevent-2.1-7t64
libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev
libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1
libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310
libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwasan0 libice6 libicu72
libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12
libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3
libldap-dev libldap2 liblerc4 liblsan0 libncursesw6 libnghttp2-14
libnghttp2-dev libnghttp3-9 libnghttp3-dev libp11-kit-dev libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev
libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib
libquadmath0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libsqlite3-0
libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6
libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl
libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6
libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler media-types
netbase nettle-dev openssl pkgconf pkgconf-bin procps python3
python3-minimal python3.13 python3.13-minimal r-base-core
r-bioc-biocgenerics r-bioc-delayedarray r-bioc-hdf5array r-bioc-iranges
r-bioc-matrixgenerics r-bioc-mofa2 r-bioc-rhdf5 r-bioc-rhdf5filters
r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-bh r-cran-cli
r-cran-colorspace r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon
r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-fansi r-cran-farver
r-cran-fnn r-cran-forcats r-cran-generics r-cran-ggplot2 r-cran-ggrepel
r-cran-glue r-cran-gtable r-cran-here r-cran-irlba r-cran-isoband
r-cran-jsonlite r-cran-labeling r-cran-lattice r-cran-lifecycle
r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats
r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pheatmap r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-purrr
r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy
r-cran-rcppeigen r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2
r-cran-reticulate r-cran-rlang r-cran-rprojroot r-cran-rspectra r-cran-rtsne
r-cran-scales r-cran-sitmo r-cran-stringi r-cran-stringr r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-uwot r-cran-vctrs
r-cran-viridislite r-cran-withr readline-common rpcsvc-proto sensible-utils
ucf unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 0 newly installed, 247 to remove and 0 not upgraded.
After this operation, 624 MB disk space will be freed.
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(Reading database ... 40246 files and directories currently installed.)
Removing r-bioc-mofa2 (1.16.0+ds-3) ...
Removing r-cran-uwot (0.2.3-1) ...
Removing r-cran-rspectra (0.16-2-1) ...
Removing r-bioc-hdf5array (1.34.0-2) ...
Removing r-bioc-delayedarray (0.32.0+dfsg-2) ...
Removing r-bioc-sparsearray (1.6.2+dfsg-1) ...
Removing r-bioc-s4arrays (1.6.0+dfsg-2) ...
Removing r-cran-abind (1.4-8-1) ...
Removing r-cran-pheatmap (1.0.12-2) ...
Removing r-cran-dqrng (0.3.2+dfsg-1) ...
Removing r-cran-sitmo (2.0.2-1+b1) ...
Removing r-bioc-rhdf5 (2.50.2+dfsg-1) ...
Removing r-bioc-rhdf5filters (1.18.0+dfsg-2) ...
Removing r-bioc-rhdf5lib (1.28.0+dfsg-2) ...
Removing libhdf5-dev (1.14.5+repack-3) ...
Removing libcurl4-openssl-dev:amd64 (8.12.1-3) ...
Removing libkrb5-dev:amd64 (1.21.3-4) ...
Removing krb5-multidev:amd64 (1.21.3-4) ...
Removing comerr-dev:amd64 (2.1-1.47.2-1) ...
Removing hdf5-helpers (1.14.5+repack-3) ...
Removing libaec-dev:amd64 (1.1.3-1+b1) ...
Removing libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ...
Removing libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ...
Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
Removing libhdf5-fortran-310:amd64 (1.14.5+repack-3) ...
Removing r-cran-bh (1.84.0-1) ...
Removing libboost-dev:amd64 (1.83.0.2+b2) ...
Removing libboost1.83-dev:amd64 (1.83.0-4.1+b1) ...
Removing libstdc++-14-dev:amd64 (14.2.0-18) ...
Removing libgcc-14-dev:amd64 (14.2.0-18) ...
Removing libasan8:amd64 (14.2.0-18) ...
Removing r-cran-rtsne (0.17-1) ...
Removing r-cran-irlba (2.3.5.1-4) ...
Removing r-cran-ggrepel (0.9.6-1) ...
Removing libblosc1:amd64 (1.21.5+ds-1+b2) ...
Removing libbrotli-dev:amd64 (1.1.0-2+b7) ...
Removing librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Removing r-bioc-xvector (0.46.0-2) ...
Removing r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Removing libjpeg-dev:amd64 (1:2.1.5-3.1) ...
Removing libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ...
Removing libgnutls28-dev:amd64 (3.8.9-2) ...
Removing libkadm5srv-mit12:amd64 (1.21.3-4) ...
Removing libkdb5-10t64:amd64 (1.21.3-4) ...
Removing libkadm5clnt-mit12:amd64 (1.21.3-4) ...
Removing libgnutls-dane0t64:amd64 (3.8.9-2) ...
Removing libunbound8:amd64 (1.22.0-1+b1) ...
Removing libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Removing r-cran-reticulate (1.41.0+dfsg-1) ...
Removing python3 (3.13.2-2) ...
Removing python3.13 (3.13.2-1) ...
Removing python3-minimal (3.13.2-2) ...
Removing python3.13-minimal (3.13.2-1) ...
Removing libpython3-stdlib:amd64 (3.13.2-2) ...
Removing libpython3.13-stdlib:amd64 (3.13.2-1) ...
find: '/usr/lib/python3': No such file or directory
Removing libp11-kit-dev:amd64 (0.25.5-3) ...
Removing r-cran-rcppeigen (0.3.4.0.2-1) ...
Removing nettle-dev:amd64 (3.10.1-1) ...
Removing libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
Removing libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ...
Removing libgnutls-openssl27t64:amd64 (3.8.9-2) ...
Removing libgssrpc4t64:amd64 (1.21.3-4) ...
Removing libhdf5-cpp-310:amd64 (1.14.5+repack-3) ...
Removing libhwasan0:amd64 (14.2.0-18) ...
Removing r-cran-tidyr (1.3.1-1) ...
Removing r-cran-reshape2 (1.4.4-2) ...
Removing r-cran-stringr (1.5.1-1) ...
Removing r-cran-stringi (1.8.4-1) ...
Removing libidn2-dev:amd64 (2.3.8-1) ...
Removing libpsl-dev:amd64 (0.21.2-1.1+b1) ...
Removing libitm1:amd64 (14.2.0-18) ...
Removing libldap-dev:amd64 (2.6.9+dfsg-2) ...
Removing liblsan0:amd64 (14.2.0-18) ...
Removing libnghttp2-dev:amd64 (1.64.0-1) ...
Removing libnghttp3-dev:amd64 (1.8.0-1) ...
Removing pkgconf:amd64 (1.8.1-4) ...
Removing pkgconf-bin (1.8.1-4) ...
Removing libpkgconf3:amd64 (1.8.1-4) ...
Removing r-cran-png (0.1-8-1+b1) ...
Removing libpython3.13-minimal:amd64 (3.13.2-1) ...
find: '/usr/lib/python3': No such file or directory
Removing libquadmath0:amd64 (14.2.0-18) ...
Removing libsnappy1v5:amd64 (1.2.1-1+b1) ...
Removing libsqlite3-0:amd64 (3.46.1-2) ...
Removing libssh2-1-dev:amd64 (1.11.1-1) ...
Removing libssl-dev:amd64 (3.4.1-1) ...
Removing libtasn1-6-dev:amd64 (4.20.0-2) ...
Removing libtsan2:amd64 (14.2.0-18) ...
Removing libubsan1:amd64 (14.2.0-18) ...
Removing libzstd-dev:amd64 (1.5.6+dfsg-2) ...
Removing littler (0.3.20-2) ...
Removing media-types (13.0.0) ...
Removing netbase (6.4) ...
Removing r-bioc-iranges (2.40.1-2) ...
Removing r-bioc-s4vectors (0.44.0+dfsg-2) ...
Removing r-bioc-matrixgenerics (1.18.1-1) ...
Removing r-bioc-biocgenerics (0.52.0-2) ...
Removing r-cran-dplyr (1.1.4-4) ...
Removing r-cran-tidyselect (1.2.1+dfsg-1) ...
Removing r-cran-forcats (1.0.0-1) ...
Removing r-cran-purrr (1.0.4-1) ...
Removing r-cran-corrplot (0.95-1) ...
Removing r-cran-cowplot (1.1.3+dfsg-1) ...
Removing r-cran-cpp11 (0.5.2-1) ...
Removing r-cran-crayon (1.5.3-1) ...
Removing r-cran-ellipsis (0.3.2-2) ...
Removing r-cran-fnn (1.1.4.1-1) ...
Removing r-cran-generics (0.1.3-1) ...
Removing r-cran-here (1.0.1-2) ...
Removing r-cran-jsonlite (1.9.1+dfsg-1) ...
Removing r-cran-matrixstats (1.5.0-1) ...
Removing r-cran-plyr (1.8.9-1) ...
Removing r-cran-rappdirs (0.3.3-1) ...
Removing r-cran-rcppannoy (0.0.22-1) ...
Removing r-cran-rcppprogress (0.4.2-2) ...
Removing r-cran-rcpptoml (0.2.3+dfsg-1) ...
Removing r-cran-rprojroot (2.0.4-2) ...
Removing r-cran-rcpp (1.0.14-1) ...
Removing libhdf5-310:amd64 (1.14.5+repack-3) ...
Removing libsz2:amd64 (1.1.3-1+b1) ...
Removing libaec0:amd64 (1.1.3-1+b1) ...
Removing r-cran-ggplot2 (3.5.1+dfsg-1) ...
Removing r-cran-mgcv (1.9-1-1) ...
Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Removing libc6-dev:amd64 (2.41-4) ...
Removing libc-dev-bin (2.41-4) ...
Removing libcrypt-dev:amd64 (1:4.4.38-1) ...
Removing linux-libc-dev (6.12.17-1) ...
Removing r-cran-tibble (3.2.1+dfsg-3) ...
Removing r-cran-fansi (1.0.6-1) ...
Removing r-cran-pillar (1.10.1+dfsg-1) ...
Removing r-cran-gtable (0.3.6+dfsg-1) ...
Removing r-cran-isoband (0.2.7-1) ...
Removing r-cran-nlme (3.1.167-1) ...
Removing r-cran-littler (0.3.20-2) ...
Removing r-cran-magrittr (2.0.3-1) ...
Removing r-cran-mass (7.3-65-1) ...
Removing r-cran-pkgconfig (2.0.3-2) ...
Removing r-cran-pkgkitten (0.2.4-1) ...
Removing r-cran-utf8 (1.2.4-1) ...
Removing r-cran-withr (3.0.2+dfsg-1) ...
Removing rpcsvc-proto (1.4.3-1) ...
Removing r-cran-matrix (1.7-3-1) ...
Removing r-cran-scales (1.3.0-1) ...
Removing r-cran-rcolorbrewer (1.1-3-1) ...
Removing r-cran-vctrs (0.6.5-1) ...
Removing r-cran-munsell (0.5.1-1) ...
Removing r-cran-colorspace (2.1-1+dfsg-1) ...
Removing r-cran-farver (2.1.2-1) ...
Removing r-cran-lifecycle (1.0.4+dfsg-1) ...
Removing r-cran-glue (1.8.0-1) ...
Removing r-cran-labeling (0.4.3-1) ...
Removing r-cran-lattice (0.22-6-1) ...
Removing r-cran-r6 (2.6.1-1) ...
Removing r-cran-rlang (1.1.5-1) ...
Removing r-cran-viridislite (0.4.2-2) ...
Removing r-cran-cli (3.6.4-1) ...
Removing r-base-core (4.4.3-1) ...
Removing ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Removing libpangocairo-1.0-0:amd64 (1.56.1-1) ...
Removing libpangoft2-1.0-0:amd64 (1.56.1-1) ...
Removing libpango-1.0-0:amd64 (1.56.1-1) ...
Removing fontconfig (2.15.0-2.1) ...
Removing libtk8.6:amd64 (8.6.16-1) ...
Removing libxft2:amd64 (2.3.6-1+b4) ...
Removing libcairo2:amd64 (1.18.2-2) ...
Removing libfontconfig1:amd64 (2.15.0-2.1) ...
Removing fontconfig-config (2.15.0-2.1) ...
Removing fonts-dejavu-core (2.37-8) ...
Removing fonts-dejavu-mono (2.37-8) ...
Removing libharfbuzz0b:amd64 (10.2.0-1) ...
Removing libglib2.0-0t64:amd64 (2.84.0-1) ...
Removing libatomic1:amd64 (14.2.0-18) ...
Removing libfreetype6:amd64 (2.13.3+dfsg-1) ...
Removing libcurl4t64:amd64 (8.12.1-3) ...
Removing libbrotli1:amd64 (1.1.0-2+b7) ...
Removing libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Removing libgssapi-krb5-2:amd64 (1.21.3-4) ...
Removing libthai0:amd64 (0.1.29-2+b1) ...
Removing libdatrie1:amd64 (0.2.13-3+b1) ...
Removing libtiff6:amd64 (4.5.1+git230720-5) ...
Removing libdeflate0:amd64 (1.23-1+b1) ...
Removing libexpat1:amd64 (2.6.4-1) ...
Removing libfribidi0:amd64 (1.0.16-1) ...
Removing liblapack3:amd64 (3.12.1-2) ...
Removing libgfortran5:amd64 (14.2.0-18) ...
Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Removing libgnutls30t64:amd64 (3.8.9-2) ...
Removing libgomp1:amd64 (14.2.0-18) ...
Removing libgraphite2-3:amd64 (1.3.14-2+b1) ...
Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Removing libsm6:amd64 (2:1.2.4-1) ...
Removing libice6:amd64 (2:1.1.1-1) ...
Removing libicu72:amd64 (72.1-6) ...
Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Removing libidn2-0:amd64 (2.3.8-1) ...
Removing libjbig0:amd64 (2.1-6.1+b2) ...
Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Removing libldap2:amd64 (2.6.9+dfsg-2) ...
Removing liblerc4:amd64 (4.0.0+ds-5) ...
Removing ucf (3.0050) ...
Removing procps (2:4.0.4-7) ...
Removing libncursesw6:amd64 (6.5+20250216-2) ...
Removing libnghttp2-14:amd64 (1.64.0-1) ...
Removing libnghttp3-9:amd64 (1.8.0-1) ...
Removing libpaper-utils (2.2.5-0.3+b1) ...
Removing libpaper2:amd64 (2.2.5-0.3+b1) ...
Removing libpixman-1-0:amd64 (0.44.0-3) ...
Removing libpng16-16t64:amd64 (1.6.47-1) ...
Removing libproc2-0:amd64 (2:4.0.4-7) ...
Removing libreadline8t64:amd64 (8.2-6) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Removing libwebp7:amd64 (1.5.0-0.1) ...
Removing libsharpyuv0:amd64 (1.5.0-0.1) ...
Removing libssh2-1t64:amd64 (1.11.1-1) ...
Removing libtasn1-6:amd64 (4.20.0-2) ...
Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Removing libtext-wrapi18n-perl (0.06-10) ...
Removing libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Removing libthai-data (0.1.29-2) ...
Removing libtirpc-common (1.3.4+ds-1.3) ...
Removing libunistring5:amd64 (1.3-1) ...
Removing libxss1:amd64 (1:1.2.3-1+b3) ...
Removing libxrender1:amd64 (1:0.9.10-1.1+b4) ...
Removing libxcb-shm0:amd64 (1.17.0-2+b1) ...
Removing libxcb-render0:amd64 (1.17.0-2+b1) ...
Removing libxext6:amd64 (2:1.3.4-1+b3) ...
Removing openssl (3.4.1-1) ...
Removing readline-common (8.2-6) ...
Removing sensible-utils (0.0.24) ...
Removing unzip (6.0-29) ...
Removing x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of stop.
Removing xdg-utils (1.2.1-2) ...
Removing zip (3.0-14) ...
Removing libblas3:amd64 (3.12.1-2) ...
Removing libkrb5-3:amd64 (1.21.3-4) ...
Removing libcom-err2:amd64 (1.47.2-1) ...
Removing libp11-kit0:amd64 (0.25.5-3) ...
Removing libffi8:amd64 (3.4.7-1) ...
Removing libk5crypto3:amd64 (1.21.3-4) ...
Removing libkeyutils1:amd64 (1.6.3-4) ...
Removing libkrb5support0:amd64 (1.21.3-4) ...
Removing libx11-6:amd64 (2:1.8.10-2) ...
Removing libx11-data (2:1.8.10-2) ...
Removing libxcb1:amd64 (1.17.0-2+b1) ...
Removing libxau6:amd64 (1:1.0.11-1) ...
Removing libxdmcp6:amd64 (1:1.1.5-1) ...
Processing triggers for libc-bin (2.41-4) ...
0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-bh', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fnn', 'r-cran-forcats', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gtable', 'r-cran-here', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcppeigen', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-scales', 'r-cran-sitmo', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-mofa2']
0m59.8s INFO: Running scripts post_remove
0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_remove_exceptions']
0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_remove_exceptions']
0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-bh', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fnn', 'r-cran-forcats', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gtable', 'r-cran-here', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcppeigen', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-scales', 'r-cran-sitmo', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64']
1m0.3s DUMP:
(Reading database ... 4970 files and directories currently installed.)
Purging configuration files for ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Purging configuration files for comerr-dev:amd64 (2.1-1.47.2-1) ...
Purging configuration files for fontconfig (2.15.0-2.1) ...
Purging configuration files for fontconfig-config (2.15.0-2.1) ...
dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed
Purging configuration files for fonts-dejavu-core (2.37-8) ...
Purging configuration files for fonts-dejavu-mono (2.37-8) ...
dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed
dpkg: warning: ignoring request to remove hdf5-helpers which isn't installed
dpkg: warning: ignoring request to remove krb5-multidev which isn't installed
dpkg: warning: ignoring request to remove libaec-dev which isn't installed
dpkg: warning: ignoring request to remove libaec0 which isn't installed
dpkg: warning: ignoring request to remove libasan8 which isn't installed
dpkg: warning: ignoring request to remove libatomic1 which isn't installed
dpkg: warning: ignoring request to remove libblas3 which isn't installed
dpkg: warning: ignoring request to remove libblosc1 which isn't installed
dpkg: warning: ignoring request to remove libboost-dev which isn't installed
dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed
dpkg: warning: ignoring request to remove libbrotli-dev which isn't installed
dpkg: warning: ignoring request to remove libbrotli1 which isn't installed
dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed
dpkg: warning: ignoring request to remove libc6-dev which isn't installed
dpkg: warning: ignoring request to remove libcairo2 which isn't installed
dpkg: warning: ignoring request to remove libcom-err2 which isn't installed
Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ...
dpkg: warning: ignoring request to remove libcurl4-openssl-dev which isn't installed
dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed
dpkg: warning: ignoring request to remove libdatrie1 which isn't installed
dpkg: warning: ignoring request to remove libdeflate0 which isn't installed
dpkg: warning: ignoring request to remove libevent-2.1-7t64 which isn't installed
dpkg: warning: ignoring request to remove libexpat1 which isn't installed
dpkg: warning: ignoring request to remove libffi8 which isn't installed
dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed
dpkg: warning: ignoring request to remove libfreetype6 which isn't installed
dpkg: warning: ignoring request to remove libfribidi0 which isn't installed
dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed
dpkg: warning: ignoring request to remove libgfortran5 which isn't installed
Purging configuration files for libglib2.0-0t64:amd64 (2.84.0-1) ...
dpkg: warning: ignoring request to remove libgmp-dev which isn't installed
dpkg: warning: ignoring request to remove libgmpxx4ldbl which isn't installed
dpkg: warning: ignoring request to remove libgnutls-dane0t64 which isn't installed
dpkg: warning: ignoring request to remove libgnutls-openssl27t64 which isn't installed
dpkg: warning: ignoring request to remove libgnutls28-dev which isn't installed
dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed
dpkg: warning: ignoring request to remove libgomp1 which isn't installed
dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed
Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-4) ...
dpkg: warning: ignoring request to remove libgssrpc4t64 which isn't installed
dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed
dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-cpp-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-dev which isn't installed
dpkg: warning: ignoring request to remove libhdf5-fortran-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-hl-cpp-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-hl-fortran-310 which isn't installed
dpkg: warning: ignoring request to remove libhwasan0 which isn't installed
dpkg: warning: ignoring request to remove libice6 which isn't installed
dpkg: warning: ignoring request to remove libicu72 which isn't installed
dpkg: warning: ignoring request to remove libidn2-0 which isn't installed
dpkg: warning: ignoring request to remove libidn2-dev which isn't installed
dpkg: warning: ignoring request to remove libitm1 which isn't installed
dpkg: warning: ignoring request to remove libjbig0 which isn't installed
dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed
dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed
dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed
dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed
dpkg: warning: ignoring request to remove libkadm5clnt-mit12 which isn't installed
dpkg: warning: ignoring request to remove libkadm5srv-mit12 which isn't installed
dpkg: warning: ignoring request to remove libkdb5-10t64 which isn't installed
dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed
dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed
dpkg: warning: ignoring request to remove libkrb5-dev which isn't installed
dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed
dpkg: warning: ignoring request to remove liblapack3 which isn't installed
dpkg: warning: ignoring request to remove libldap-dev which isn't installed
dpkg: warning: ignoring request to remove libldap2 which isn't installed
dpkg: warning: ignoring request to remove liblerc4 which isn't installed
dpkg: warning: ignoring request to remove liblsan0 which isn't installed
dpkg: warning: ignoring request to remove libncursesw6 which isn't installed
dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed
dpkg: warning: ignoring request to remove libnghttp2-dev which isn't installed
dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed
dpkg: warning: ignoring request to remove libnghttp3-dev which isn't installed
dpkg: warning: ignoring request to remove libp11-kit-dev which isn't installed
dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed
dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpaper-utils which isn't installed
Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b1) ...
dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed
dpkg: warning: ignoring request to remove libpkgconf3 which isn't installed
dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed
dpkg: warning: ignoring request to remove libproc2-0 which isn't installed
dpkg: warning: ignoring request to remove libpsl-dev which isn't installed
dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed
dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed
Purging configuration files for libpython3.13-minimal:amd64 (3.13.2-1) ...
dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed
dpkg: warning: ignoring request to remove libquadmath0 which isn't installed
Purging configuration files for libreadline8t64:amd64 (8.2-6) ...
dpkg: warning: ignoring request to remove librtmp-dev which isn't installed
dpkg: warning: ignoring request to remove librtmp1 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed
dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed
dpkg: warning: ignoring request to remove libsm6 which isn't installed
dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed
dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed
dpkg: warning: ignoring request to remove libssh2-1-dev which isn't installed
dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed
dpkg: warning: ignoring request to remove libssl-dev which isn't installed
dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed
dpkg: warning: ignoring request to remove libsz2 which isn't installed
dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed
dpkg: warning: ignoring request to remove libtasn1-6-dev which isn't installed
dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed
dpkg: warning: ignoring request to remove libtext-charwidth-perl which isn't installed
dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which isn't installed
dpkg: warning: ignoring request to remove libthai-data which isn't installed
dpkg: warning: ignoring request to remove libthai0 which isn't installed
dpkg: warning: ignoring request to remove libtiff6 which isn't installed
Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ...
Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
dpkg: warning: ignoring request to remove libtk8.6 which isn't installed
dpkg: warning: ignoring request to remove libtsan2 which isn't installed
dpkg: warning: ignoring request to remove libubsan1 which isn't installed
dpkg: warning: ignoring request to remove libunbound8 which isn't installed
dpkg: warning: ignoring request to remove libunistring5 which isn't installed
dpkg: warning: ignoring request to remove libwebp7 which isn't installed
dpkg: warning: ignoring request to remove libx11-6 which isn't installed
dpkg: warning: ignoring request to remove libx11-data which isn't installed
dpkg: warning: ignoring request to remove libxau6 which isn't installed
dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed
dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed
dpkg: warning: ignoring request to remove libxcb1 which isn't installed
dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed
dpkg: warning: ignoring request to remove libxext6 which isn't installed
dpkg: warning: ignoring request to remove libxft2 which isn't installed
dpkg: warning: ignoring request to remove libxrender1 which isn't installed
dpkg: warning: ignoring request to remove libxss1 which isn't installed
dpkg: warning: ignoring request to remove libxt6t64 which isn't installed
dpkg: warning: ignoring request to remove libzstd-dev which isn't installed
dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed
dpkg: warning: ignoring request to remove littler which isn't installed
Purging configuration files for media-types (13.0.0) ...
Purging configuration files for netbase (6.4) ...
dpkg: warning: ignoring request to remove nettle-dev which isn't installed
Purging configuration files for openssl (3.4.1-1) ...
Purging configuration files for pkgconf:amd64 (1.8.1-4) ...
dpkg: warning: ignoring request to remove pkgconf-bin which isn't installed
Purging configuration files for procps (2:4.0.4-7) ...
Purging configuration files for python3 (3.13.2-2) ...
dpkg: warning: ignoring request to remove python3-minimal which isn't installed
dpkg: warning: ignoring request to remove python3.13 which isn't installed
Purging configuration files for python3.13-minimal (3.13.2-1) ...
Purging configuration files for r-base-core (4.4.3-1) ...
dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed
dpkg: warning: ignoring request to remove r-bioc-hdf5array which isn't installed
dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed
dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rhdf5 which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which isn't installed
dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed
dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed
dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed
dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed
dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed
dpkg: warning: ignoring request to remove r-cran-abind which isn't installed
dpkg: warning: ignoring request to remove r-cran-bh which isn't installed
dpkg: warning: ignoring request to remove r-cran-cli which isn't installed
dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed
dpkg: warning: ignoring request to remove r-cran-corrplot which isn't installed
dpkg: warning: ignoring request to remove r-cran-cowplot which isn't installed
dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed
dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed
dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-dqrng which isn't installed
dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed
dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed
dpkg: warning: ignoring request to remove r-cran-farver which isn't installed
dpkg: warning: ignoring request to remove r-cran-fnn which isn't installed
dpkg: warning: ignoring request to remove r-cran-forcats which isn't installed
dpkg: warning: ignoring request to remove r-cran-generics which isn't installed
dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed
dpkg: warning: ignoring request to remove r-cran-ggrepel which isn't installed
dpkg: warning: ignoring request to remove r-cran-glue which isn't installed
dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed
dpkg: warning: ignoring request to remove r-cran-here which isn't installed
dpkg: warning: ignoring request to remove r-cran-irlba which isn't installed
dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed
dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed
dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed
dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed
dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed
dpkg: warning: ignoring request to remove r-cran-littler which isn't installed
dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed
dpkg: warning: ignoring request to remove r-cran-mass which isn't installed
dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed
dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed
dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed
dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed
dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed
dpkg: warning: ignoring request to remove r-cran-pheatmap which isn't installed
dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed
dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed
dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed
dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-png which isn't installed
dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed
dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed
dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcppannoy which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcppprogress which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcpptoml which isn't installed
dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed
dpkg: warning: ignoring request to remove r-cran-reticulate which isn't installed
dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed
dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed
dpkg: warning: ignoring request to remove r-cran-rspectra which isn't installed
dpkg: warning: ignoring request to remove r-cran-rtsne which isn't installed
dpkg: warning: ignoring request to remove r-cran-scales which isn't installed
dpkg: warning: ignoring request to remove r-cran-sitmo which isn't installed
dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed
dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed
dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed
dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed
dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed
dpkg: warning: ignoring request to remove r-cran-uwot which isn't installed
dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed
dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed
dpkg: warning: ignoring request to remove r-cran-withr which isn't installed
Purging configuration files for readline-common (8.2-6) ...
dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed
dpkg: warning: ignoring request to remove sensible-utils which isn't installed
Purging configuration files for ucf (3.0050) ...
dpkg: warning: ignoring request to remove unzip which isn't installed
Purging configuration files for x11-common (1:7.7+24) ...
dpkg: warning: ignoring request to remove xdg-utils which isn't installed
dpkg: warning: ignoring request to remove zip which isn't installed
dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed
1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-bh', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fnn', 'r-cran-forcats', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gtable', 'r-cran-here', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcppeigen', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-scales', 'r-cran-sitmo', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64']
1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--purge', 'r-bioc-mofa2']
1m0.4s DUMP:
dpkg: warning: ignoring request to remove r-bioc-mofa2 which isn't installed
1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--purge', 'r-bioc-mofa2']
1m0.4s INFO: Running scripts post_purge
1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_purge_exceptions']
1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_purge_exceptions']
1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--purge', '--pending']
1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--purge', '--pending']
1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--remove', '--pending']
1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg', '--remove', '--pending']
1m0.4s INFO: Running scripts post_test
1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_test_exceptions']
1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'tmp/scripts/post_test_exceptions']
1m0.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
1m0.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
1m1.4s ERROR: WARN: Broken symlinks:
/etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf
1m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-divert', '--list']
1m1.4s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
1m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'dpkg-divert', '--list']
1m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'clean']
1m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpkt826lgf', 'apt-get', 'clean']
1m1.4s DEBUG: Recording chroot state
1m2.0s INFO: Warning: Package purging left files on system:
/etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono
/etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono
/etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned
1m2.1s INFO: PASS: Installation and purging test.
1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/shm']
1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/shm']
1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/console']
1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/console']
1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/ptmx']
1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/ptmx']
1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/pts']
1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/dev/pts']
1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/proc']
1m2.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpkt826lgf/proc']
1m2.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
1m2.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpkt826lgf']
1m2.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpkt826lgf
1m2.5s INFO: PASS: All tests.
1m2.5s INFO: piuparts run ends.
ret=0
End: 2025-03-12 22:09:34 GMT