Start: 2026-05-03 11:15:52 GMT Package: r-cran-seurat Version: 5.5.0-1 Installed-Size: 4414 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-cran-seuratobject (>= 5.0.2), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2 (>= 3.3.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly (>= 4.9.0), r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy (>= 0.0.18), r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot (>= 0.1.10), r-cran-rcppeigen, r-cran-rcppprogress, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 14) Recommends: r-cran-base64enc, r-cran-data.table, r-cran-magrittr, r-cran-sp Description: Tools for Single Cell Genomics Homepage: https://cran.r-project.org/package=Seurat Description-md5: f580dac72f2e0dbd7bed02bdd06ec1a8 Section: gnu-r Priority: optional Filename: pool/main/r/r-cran-seurat/r-cran-seurat_5.5.0-1_amd64.deb Size: 3355064 MD5sum: fc5890ddbaef6aa897051893a14c4e0a SHA256: 805c8e479791a4edcb89292124608b99420f277127525e5e3da781b646962440 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-cran-seurat=5.5.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-no-usr-share-doc --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-cran-seurat=5.5.0-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-45-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.170-1 (2026-04-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpyrxojedw 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpyrxojedw 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpyrxojedw/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-no-usr-share-doc to /srv/piuparts.debian.org/tmp/tmpyrxojedw/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'update'] 0m2.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [189 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.4 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7580 kB] Fetched 18.2 MB in 2s (9824 kB/s) Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s DUMP: f2972f0aeecf49efbe5d1c7aec0b55ff - 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.3s INFO: Running scripts post_setup 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m4.3s DUMP: dpkg-query: no packages found matching systemd dpkg-query: no packages found matching systemd-sysv dpkg-query: no packages found matching sysv-rc 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_disable_usr_share_doc'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_forbid_home'] 0m5.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_forbid_home'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_minimize'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'clean'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'clean'] 0m5.1s DEBUG: Recording chroot state 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DUMP: install ok installed apt apt 3.3.0 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.42-5 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-4 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260425-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-15 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-15 install ok installed libc6:amd64 libc6 2.42-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b3 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260425-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.42-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b2 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b2 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.10-1 install ok installed libsemanage-common libsemanage-common 3.10-1 install ok installed libsemanage2:amd64 libsemanage2 3.10-1 install ok installed libsepol2:amd64 libsepol2 3.10-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42-5 install ok installed libssl3t64:amd64 libssl3t64 3.6.2-1 install ok installed libstdc++6:amd64 libstdc++6 16-20260425-1 install ok installed libsystemd0:amd64 libsystemd0 260.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1+b1 install ok installed libudev1:amd64 libudev1 260.1-1 install ok installed libuuid1:amd64 libuuid1 2.42-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b2 install ok installed login login 1:4.16.0-2+really2.42-5 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42-5 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.2-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.40.1-7+b1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.3.0-5+b1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026b-1 install ok installed util-linux util-linux 2.42-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-divert', '--list'] 0m5.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-divert', '--list'] 0m5.8s INFO: Running scripts is_testable 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s INFO: apt-cache does not know about any of the requested packages 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_test_root_password'] 0m5.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_test_root_password'] 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 0m6.3s DEBUG: No broken symlinks as far as we can find. 0m6.3s INFO: Running scripts pre_install 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_database-server'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_extras'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 0m6.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 0m7.1s DEBUG: No broken symlinks as far as we can find. 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-cache', 'policy'] 0m7.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-cache', 'policy'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-cache', 'policy', 'r-cran-seurat'] 0m8.0s DUMP: r-cran-seurat: Installed: (none) Candidate: 5.5.0-1 Version table: 5.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-cache', 'policy', 'r-cran-seurat'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', '-y', 'install', 'r-cran-seurat=5.5.0-1'] 0m45.9s DUMP: Reading package lists... Building dependency tree... Solving dependencies... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-15-base git git-man javascript-common libamd3 libasan8 libatomic1 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcolamd3 libcom-err2 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdeflate0 liberror-perl libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-15-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu78 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-15-dev libsuitesparseconfig7 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 libyaml-0-2 linux-libc-dev media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-minimal python3.13 python3.13-minimal r-base-core r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colourpicker r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deldir r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng r-cran-evaluate r-cran-farver r-cran-fastdummies r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome r-cran-fs r-cran-future r-cran-future.apply r-cran-gdata r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-here r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-miniui r-cran-nlme r-cran-openssl r-cran-otel r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-png r-cran-polyclip r-cran-progressr r-cran-promises r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rtsne r-cran-s7 r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-seuratobject r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-zoo readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip Suggested packages: gettext-base git-doc git-email git-gui gitk gitweb git-cvs git-svn apache2 | lighttpd | httpd libboost-doc libboost1.90-doc libboost-atomic1.90-dev libboost-chrono1.90-dev libboost-container1.90-dev libboost-context1.90-dev libboost-contract1.90-dev libboost-coroutine1.90-dev libboost-date-time1.90-dev libboost-exception1.90-dev libboost-fiber1.90-dev libboost-filesystem1.90-dev libboost-graph-parallel1.90-dev libboost-graph1.90-dev libboost-iostreams1.90-dev libboost-json1.90-dev libboost-locale1.90-dev libboost-log1.90-dev libboost-math1.90-dev libboost-mpi-python1.90-dev libboost-mpi1.90-dev libboost-nowide1.90-dev libboost-numpy1.90-dev libboost-program-options1.90-dev libboost-python1.90-dev libboost-random1.90-dev libboost-regex1.90-dev libboost-serialization1.90-dev libboost-stacktrace1.90-dev libboost-test1.90-dev libboost-thread1.90-dev libboost-timer1.90-dev libboost-type-erasure1.90-dev libboost-url1.90-dev libboost-wave1.90-dev libboost1.90-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev gdbm-l10n low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gnutls-bin krb5-doc krb5-user libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libstdc++-15-doc tcl8.6 tk8.6 nodejs citation-style-language-styles context ghc groff libjs-katex librsvg2-bin pandoc-citeproc php ruby texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-xetex wkhtmltopdf perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-getopt r-cran-covr r-cran-testthat r-cran-inline readline-doc Recommended packages: patch less ssh-client manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs node-jquery krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules psmisc linux-sysctl-defaults r-recommended r-base-dev r-doc-html node-highlight.js libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-15-base git git-man javascript-common libamd3 libasan8 libatomic1 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcolamd3 libcom-err2 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdeflate0 liberror-perl libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-15-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu78 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-15-dev libsuitesparseconfig7 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 libyaml-0-2 linux-libc-dev media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-minimal python3.13 python3.13-minimal r-base-core r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colourpicker r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deldir r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng r-cran-evaluate r-cran-farver r-cran-fastdummies r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome r-cran-fs r-cran-future r-cran-future.apply r-cran-gdata r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-here r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-miniui r-cran-nlme r-cran-openssl r-cran-otel r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-png r-cran-polyclip r-cran-progressr r-cran-promises r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rtsne r-cran-s7 r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-seurat r-cran-seuratobject r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-zoo readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip 0 upgraded, 311 newly installed, 0 to remove and 0 not upgraded. Need to get 292 MB of archives. After this operation, 1084 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.0-1 [116 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.9-3+b1 [25.4 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-4 [25.2 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20251231-1+b1 [136 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.9-3+b1 [8348 B] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.9-3+b1 [25.4 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-9+b2 [63.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-9+b2 [880 kB] Get:18 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:19 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.2-1 [1517 kB] Get:20 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260223 [158 kB] Get:21 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-7+b1 [4319 kB] Get:25 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-7+b1 [264 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9532 B] Get:27 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:28 http://deb.debian.org/debian sid/main amd64 ucf all 3.0053 [41.9 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-1 [493 kB] Get:32 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:33 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:34 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:36 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:37 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:38 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-7 [163 kB] Get:39 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:40 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-17 [36.8 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.22.1-1 [133 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4+b2 [109 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.2-2 [470 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-2+b1 [31.0 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-2+b1 [78.9 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:52 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-2+b1 [336 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-2+b1 [137 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.10+dfsg-1+b2 [188 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.69.0-1 [89.0 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.22.1-1 [20.8 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.5-1 [59.9 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-2 [244 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.20.0-1 [403 kB] Get:62 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:63 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.53.0-1 [2326 kB] Get:64 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.53.0-1 [9410 kB] Get:65 http://deb.debian.org/debian sid/main amd64 javascript-common all 12+nmu1 [4864 B] Get:66 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16-20260425-1 [151 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.12.2+dfsg-1 [33.7 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.12.2+dfsg-1 [50.6 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16-20260425-1 [2888 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16-20260425-1 [10.5 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7+b2 [206 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16-20260425-1 [27.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16-20260425-1 [1280 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16-20260425-1 [2572 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16-20260425-1 [1136 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16-20260425-1 [1580 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16-20260425-1 [147 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libgcc-15-dev amd64 15.2.0-17 [2718 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.42-15 [37.7 kB] Get:80 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 7.0.3-1 [1952 kB] Get:81 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.42-15 [1994 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libstdc++-15-dev amd64 15.2.0-17 [2780 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libboost1.90-dev amd64 1.90.0-6 [11.3 MB] Get:85 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.90.0.2 [3064 B] Get:86 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.12.2+dfsg-1 [42.5 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.22.1-1 [23.3 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.20.0-1 [409 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-1+b1 [39.5 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-2+b2 [48.3 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16-20260425-1 [884 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.88.0-1 [1536 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.5.4-11 [416 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-2+b2 [392 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-13 [75.9 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:109 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.3-1 [10.0 MB] Get:112 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-7 [173 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-7 [52.3 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.2+dfsg-2 [519 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libjs-highlight.js all 10.7.3+dfsg-4 [177 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [4008 B] Get:124 http://deb.debian.org/debian sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libjs-prettify all 2015.12.04+dfsg-3 [42.0 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:131 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7+b2 [2546 kB] Get:132 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.1.0+ds-1 [199 kB] Get:133 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.8-1+b2 [148 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-1 [172 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-1+b1 [52.1 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.57.1-2 [224 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.57.1-2 [52.8 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.57.1-2 [33.8 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b3 [16.7 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b3 [16.5 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1+b2 [1053 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.1-2 [357 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.17-1+b2 [800 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.51.0-2+b2 [155 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.2+dfsg-0.1 [641 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:156 http://deb.debian.org/debian sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:157 http://deb.debian.org/debian sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:158 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5.1 [12.4 kB] Get:159 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.9.0.2-1 [526 kB] Get:160 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.9.0.2-1 [28.8 MB] Get:161 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-15 [235 kB] Get:162 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB] Get:163 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:164 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.0-2 [29.7 MB] Get:165 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:166 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.3-2 [44.4 kB] Get:167 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.1-2 [24.4 kB] Get:168 http://deb.debian.org/debian sid/main amd64 r-cran-base64enc amd64 0.1-6-2 [30.7 kB] Get:169 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:170 http://deb.debian.org/debian sid/main amd64 r-cran-bitops amd64 1.0-9-2 [30.7 kB] Get:171 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.2.0-3 [1734 kB] Get:172 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-2 [72.2 kB] Get:173 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-2 [73.8 kB] Get:174 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.39-1 [212 kB] Get:175 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.9-2 [377 kB] Get:176 http://deb.debian.org/debian sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.4 kB] Get:177 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-2 [447 kB] Get:178 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:179 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:180 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:181 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.13-2 [47.5 kB] Get:182 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 1.6.7+dfsg-2 [256 kB] Get:183 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:184 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.4-2 [50.4 kB] Get:185 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.10+dfsg-1 [979 kB] Get:186 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.10.0+dfsg-1 [5074 kB] Get:187 http://deb.debian.org/debian sid/main amd64 r-cran-catools amd64 1.18.3-2 [208 kB] Get:188 http://deb.debian.org/debian sid/main amd64 r-cran-cluster amd64 2.1.8.2-1 [585 kB] Get:189 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:190 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.1-1 [172 kB] Get:191 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.6+dfsg-2 [228 kB] Get:192 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.4-2 [234 kB] Get:193 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.3.0-1 [1644 kB] Get:194 http://deb.debian.org/debian sid/main amd64 r-cran-s7 amd64 0.2.2-1 [331 kB] Get:195 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-3 [1414 kB] Get:196 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-2 [63.2 kB] Get:197 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-2 [54.0 kB] Get:198 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.3-1 [1299 kB] Get:199 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.4.0-1 [800 kB] Get:200 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.7.3-1 [1983 kB] Get:201 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-2 [226 kB] Get:202 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4918 kB] Get:203 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 1.0.5-2 [117 kB] Get:204 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.57+dfsg-1 [593 kB] Get:205 http://deb.debian.org/debian sid/main amd64 r-cran-highr all 0.12+dfsg-1 [38.3 kB] Get:206 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.12-1 [120 kB] Get:207 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.51+dfsg-2 [847 kB] Get:208 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.3-2 [1311 kB] Get:209 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.58-1 [150 kB] Get:210 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 2.0.0-2 [123 kB] Get:211 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.23-1 [96.5 kB] Get:212 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:213 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.1.1-1.1-1 [2157 kB] Get:214 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.4.8+dfsg-1 [145 kB] Get:215 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.5-1 [209 kB] Get:216 http://deb.debian.org/debian sid/main amd64 r-cran-otel all 0.2.0-1 [293 kB] Get:217 http://deb.debian.org/debian sid/main amd64 r-cran-promises all 1.5.0+dfsg-1 [302 kB] Get:218 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.16+dfsg-1 [513 kB] Get:219 http://deb.debian.org/debian sid/main amd64 r-cran-sourcetools amd64 0.1.7-2-1 [46.7 kB] Get:220 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-8-1 [737 kB] Get:221 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.13.0+dfsg-1 [3057 kB] Get:222 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1474 kB] Get:223 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-2 [124 kB] Get:224 http://deb.debian.org/debian sid/main amd64 r-cran-miniui all 0.1.2-1 [37.4 kB] Get:225 http://deb.debian.org/debian sid/main amd64 r-cran-shinyjs all 2.1.0-2 [1012 kB] Get:226 http://deb.debian.org/debian sid/main amd64 r-cran-colourpicker all 1.3.0+dfsg-2 [1213 kB] Get:227 http://deb.debian.org/debian sid/main amd64 r-cran-cowplot all 1.2.0+dfsg-1 [653 kB] Get:228 http://deb.debian.org/debian sid/main amd64 r-cran-lazyeval amd64 0.2.3-1 [170 kB] Get:229 http://deb.debian.org/debian sid/main amd64 r-cran-crosstalk all 1.2.2+dfsg-1 [181 kB] Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 7.1.0+dfsg-1 [202 kB] Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.18.2.1+dfsg-3 [2340 kB] Get:232 http://deb.debian.org/debian sid/main amd64 r-cran-deldir amd64 2.0-4-2 [291 kB] Get:233 http://deb.debian.org/debian sid/main amd64 r-cran-dotcall64 amd64 1.2-2 [34.5 kB] Get:234 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:235 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.6-2 [138 kB] Get:236 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.11.1+dfsg-1 [457 kB] Get:237 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:238 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.3.1+dfsg-2 [452 kB] Get:239 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-2 [223 kB] Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.2.1-1 [1574 kB] Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-sitmo amd64 2.0.2-2 [130 kB] Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-dqrng amd64 0.3.2+dfsg-2 [135 kB] Get:243 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.7-2 [895 kB] Get:244 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.6.0-1 [323 kB] Get:245 http://deb.debian.org/debian sid/main amd64 r-cran-fastdummies all 1.7.6-1 [51.8 kB] Get:246 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Get:247 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-9-1 [1450 kB] Get:248 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-5-1 [4207 kB] Get:249 http://deb.debian.org/debian sid/main amd64 r-cran-survival amd64 3.8-6-1 [8323 kB] Get:250 http://deb.debian.org/debian sid/main amd64 r-cran-fitdistrplus all 1.2-6-1 [2902 kB] Get:251 http://deb.debian.org/debian sid/main amd64 r-cran-fnn amd64 1.1.4.1-2 [125 kB] Get:252 http://deb.debian.org/debian sid/main amd64 r-cran-globals all 0.19.1-1 [165 kB] Get:253 http://deb.debian.org/debian sid/main amd64 r-cran-listenv all 0.10.1+dfsg-1 [120 kB] Get:254 http://deb.debian.org/debian sid/main amd64 r-cran-parallelly amd64 1.46.0-2 [594 kB] Get:255 http://deb.debian.org/debian sid/main amd64 r-cran-future all 1.70.0+dfsg-1 [919 kB] Get:256 http://deb.debian.org/debian sid/main amd64 r-cran-future.apply all 1.20.2+dfsg-1 [192 kB] Get:257 http://deb.debian.org/debian sid/main amd64 r-cran-gtools amd64 3.9.5-1 [362 kB] Get:258 http://deb.debian.org/debian sid/main amd64 r-cran-gdata all 3.0.1-1 [509 kB] Get:259 http://deb.debian.org/debian sid/main amd64 r-cran-ggrepel amd64 0.9.8-1 [340 kB] Get:260 http://deb.debian.org/debian sid/main amd64 r-cran-ggridges all 0.5.7-1 [2224 kB] Get:261 http://deb.debian.org/debian sid/main amd64 r-cran-goftest amd64 1.2-3-2 [60.3 kB] Get:262 http://deb.debian.org/debian sid/main amd64 r-cran-kernsmooth amd64 2.23-26-1 [93.0 kB] Get:263 http://deb.debian.org/debian sid/main amd64 r-cran-gplots all 3.3.0-1 [3806 kB] Get:264 http://deb.debian.org/debian sid/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:265 http://deb.debian.org/debian sid/main amd64 r-cran-rprojroot all 2.1.1-1 [132 kB] Get:266 http://deb.debian.org/debian sid/main amd64 r-cran-here all 1.0.2-1 [50.2 kB] Get:267 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.4.0+dfsg-1 [400 kB] Get:268 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.8+dfsg-1 [471 kB] Get:269 http://deb.debian.org/debian sid/main amd64 r-cran-ica all 1.0-3-2 [88.3 kB] Get:270 http://deb.debian.org/debian sid/main amd64 r-cran-igraph amd64 2.3.0-1 [5798 kB] Get:271 http://deb.debian.org/debian sid/main amd64 r-cran-irlba amd64 2.3.7-1 [451 kB] Get:272 http://deb.debian.org/debian sid/main amd64 r-cran-zoo amd64 1.8-15-1 [1029 kB] Get:273 http://deb.debian.org/debian sid/main amd64 r-cran-lmtest amd64 0.9.40-1 [399 kB] Get:274 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-2 [503 kB] Get:275 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.169-1 [2328 kB] Get:276 http://deb.debian.org/debian sid/main amd64 r-cran-patchwork all 1.3.2-1 [3408 kB] Get:277 http://deb.debian.org/debian sid/main amd64 r-cran-pbapply all 1.7-2-2 [104 kB] Get:278 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.2.2-1 [575 kB] Get:279 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.2-2 [1162 kB] Get:280 http://deb.debian.org/debian sid/main amd64 r-cran-plotly all 4.10.4+dfsg-4 [3608 kB] Get:281 http://deb.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.9-2 [792 kB] Get:282 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-9-1 [42.9 kB] Get:283 http://deb.debian.org/debian sid/main amd64 r-cran-polyclip amd64 1.10-7-2 [112 kB] Get:284 http://deb.debian.org/debian sid/main amd64 r-cran-progressr all 0.18.0-1 [374 kB] Get:285 http://deb.debian.org/debian sid/main amd64 r-cran-rann amd64 2.6.2-2 [45.0 kB] Get:286 http://deb.debian.org/debian sid/main amd64 r-cran-rcppannoy amd64 0.0.23-1 [267 kB] Get:287 http://deb.debian.org/debian sid/main amd64 r-cran-rcpparmadillo amd64 15.2.6-1-1 [840 kB] Get:288 http://deb.debian.org/debian sid/main amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1411 kB] Get:289 http://deb.debian.org/debian sid/main amd64 r-cran-rcpphnsw amd64 0.6.0+ds-2 [170 kB] Get:290 http://deb.debian.org/debian sid/main amd64 r-cran-rcppprogress all 0.4.2-3 [22.5 kB] Get:291 http://deb.debian.org/debian sid/main amd64 r-cran-rcpptoml amd64 0.2.3+dfsg-2 [114 kB] Get:292 http://deb.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.5-1 [120 kB] Get:293 http://deb.debian.org/debian sid/main amd64 r-cran-reticulate amd64 1.46.0+dfsg-1 [1616 kB] Get:294 http://deb.debian.org/debian sid/main amd64 r-cran-rocr all 1.0-12-1 [467 kB] Get:295 http://deb.debian.org/debian sid/main amd64 r-cran-rspectra amd64 0.16-2-2 [427 kB] Get:296 http://deb.debian.org/debian sid/main amd64 r-cran-rtsne amd64 0.17-2 [106 kB] Get:297 http://deb.debian.org/debian sid/main amd64 r-cran-scattermore amd64 1.2-2 [334 kB] Get:298 http://deb.debian.org/debian sid/main amd64 r-cran-sctransform amd64 0.4.3-1 [500 kB] Get:299 http://deb.debian.org/debian sid/main amd64 r-cran-sp amd64 1:2.2-1+dfsg-1 [1449 kB] Get:300 http://deb.debian.org/debian sid/main amd64 r-cran-spam amd64 2.11-3-1 [1921 kB] Get:301 http://deb.debian.org/debian sid/main amd64 r-cran-seuratobject amd64 5.4.0-1 [1838 kB] Get:302 http://deb.debian.org/debian sid/main amd64 r-cran-spatstat.utils amd64 3.2-2-1 [401 kB] Get:303 http://deb.debian.org/debian sid/main amd64 r-cran-spatstat.data all 3.1-9-1 [4146 kB] Get:304 http://deb.debian.org/debian sid/main amd64 r-cran-spatstat.univar amd64 3.1-7-1 [329 kB] Get:305 http://deb.debian.org/debian sid/main amd64 r-cran-spatstat.geom amd64 3.7-3-1 [4174 kB] Get:306 http://deb.debian.org/debian sid/main amd64 r-cran-spatstat.random amd64 3.4-5-1 [1252 kB] Get:307 http://deb.debian.org/debian sid/main amd64 r-cran-tensor all 1.5.1-1 [16.4 kB] Get:308 http://deb.debian.org/debian sid/main amd64 r-cran-spatstat.sparse amd64 3.1-0-2 [218 kB] Get:309 http://deb.debian.org/debian sid/main amd64 r-cran-spatstat.explore amd64 3.8-0-1 [3591 kB] Get:310 http://deb.debian.org/debian sid/main amd64 r-cran-uwot amd64 0.2.4-1 [975 kB] Get:311 http://deb.debian.org/debian sid/main amd64 r-cran-seurat amd64 5.5.0-1 [3355 kB] Preconfiguring packages ... Fetched 292 MB in 6s (47.8 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.0-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.12-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.12-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.12-1_amd64.deb ... Unpacking python3.13-minimal (3.13.12-1) ... Setting up libpython3.13-minimal:amd64 (3.13.12-1) ... Setting up libexpat1:amd64 (2.8.0-1) ... Setting up python3.13-minimal (3.13.12-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5242 files and directories currently installed.) 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Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-9+b1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-9+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.12-1_amd64.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5762 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.9-3+b1_amd64.deb ... Unpacking python3 (3.13.9-3+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9+b2_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9+b2) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9+b2_amd64.deb ... Unpacking procps (2:4.0.4-9+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.6.2-1_amd64.deb ... Unpacking openssl (3.6.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20260223_all.deb ... Unpacking ca-certificates (20260223) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../006-perl-modules-5.40_5.40.1-7_all.deb ... Unpacking perl-modules-5.40 (5.40.1-7) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../007-libgdbm6t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.26-1+b2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../008-libgdbm-compat4t64_1.26-1+b2_amd64.deb ... 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Preparing to unpack .../014-libbrotli1_1.2.0-3_amd64.deb ... Unpacking libbrotli1:amd64 (1.2.0-3) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../015-libpng16-16t64_1.6.58-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.58-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../016-libfreetype6_2.14.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.14.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../017-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../018-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../019-fontconfig-config_2.17.1-5_amd64.deb ... Unpacking fontconfig-config (2.17.1-5) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../020-libfontconfig1_2.17.1-5_amd64.deb ... Unpacking libfontconfig1:amd64 (2.17.1-5) ... Selecting previously unselected package fontconfig. Preparing to unpack .../021-fontconfig_2.17.1-5_amd64.deb ... Unpacking fontconfig (2.17.1-5) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../022-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../023-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-7_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../024-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package gcc-15-base:amd64. Preparing to unpack .../025-gcc-15-base_15.2.0-17_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-17) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../026-libnghttp3-9_1.15.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.15.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../027-libngtcp2-16_1.22.1-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.22.1-1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../028-libunistring5_1.4.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.4.2-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../029-libidn2-0_2.3.8-4+b2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4+b2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../030-libp11-kit0_0.26.2-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.26.2-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../031-libtasn1-6_4.21.0-2+b1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.21.0-2+b1) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../032-libgnutls30t64_3.8.13-1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.13-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../033-libkrb5support0_1.22.1-2+b1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.22.1-2+b1) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../034-libcom-err2_1.47.4-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.4-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../035-libk5crypto3_1.22.1-2+b1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.22.1-2+b1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../036-libkeyutils1_1.6.3-6+b2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6+b2) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.7+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../134-libxft2_2.3.6-1+b5_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b5) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../135-libxss1_1%3a1.2.3-1+b4_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b4) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../136-libtk8.6_8.6.17-1+b2_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.17-1+b2) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../137-libuv1t64_1.51.0-2+b2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2+b2) ... 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Setting up r-cran-viridislite (0.4.3-1) ... Setting up r-cran-cluster (2.1.8.2-1) ... Setting up r-cran-tensor (1.5.1-1) ... Setting up r-cran-commonmark (2.0.0-2) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-spatstat.univar (3.1-7-1) ... Setting up r-cran-magrittr (2.0.5-1) ... Setting up r-cran-rappdirs (0.3.4-2) ... Setting up r-cran-littler (0.3.23-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-fs (1.6.7+dfsg-2) ... Setting up r-cran-rcpp (1.1.1-1.1-1) ... Setting up r-cran-curl (7.1.0+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-rlang (1.2.0-3) ... Setting up r-cran-matrixstats (1.5.0-2) ... Setting up r-cran-listenv (0.10.1+dfsg-1) ... Setting up r-cran-xfun (0.57+dfsg-1) ... Setting up r-cran-rcpphnsw (0.6.0+ds-2) ... Setting up r-cran-sys (3.4.3-2) ... Setting up r-cran-withr (3.0.2+dfsg-2) ... Setting up r-cran-mime (0.13-2) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-base64enc (0.1-6-2) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-digest (0.6.39-1) ... Setting up r-cran-yaml (2.3.12-1) ... Setting up r-cran-ica (1.0-3-2) ... Setting up r-cran-rann (2.6.2-2) ... Setting up r-cran-evaluate (1.0.5-2) ... Setting up r-cran-highr (0.12+dfsg-1) ... Setting up r-cran-mass (7.3-65-1) ... Setting up r-cran-gtools (3.9.5-1) ... Setting up r-cran-data.table (1.18.2.1+dfsg-3) ... Setting up r-cran-glue (1.8.1-1) ... Setting up r-cran-xtable (1:1.8-8-1) ... Setting up r-cran-polyclip (1.10-7-2) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-dotcall64 (1.2-2) ... Setting up r-cran-bitops (1.0-9-2) ... Setting up r-cran-rprojroot (2.1.1-1) ... Setting up r-cran-fnn (1.1.4.1-2) ... Setting up r-cran-progressr (0.18.0-1) ... Setting up r-cran-deldir (2.0-4-2) ... Setting up r-cran-goftest (1.2-3-2) ... Setting up r-cran-askpass (1.2.1-2) ... Setting up r-cran-fastmap (1.2.0-2) ... Setting up r-cran-png (0.1-9-1) ... Setting up r-cran-jsonlite (2.0.0+dfsg-2) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-sp (1:2.2-1+dfsg-1) ... Setting up r-cran-utf8 (1.2.6-2) ... Setting up r-cran-parallelly (1.46.0-2) ... Setting up r-cran-stringi (1.8.7-2) ... Setting up r-cran-s7 (0.2.2-1) ... Setting up r-cran-cpp11 (0.5.4-2) ... Setting up r-cran-sitmo (2.0.2-2) ... Setting up r-cran-plyr (1.8.9-2) ... Setting up r-cran-rcolorbrewer (1.1-3-2) ... Setting up r-cran-isoband (0.3.0-1) ... Setting up r-cran-scales (1.4.0-1) ... Setting up r-cran-gtable (0.3.6+dfsg-2) ... Setting up r-cran-zoo (1.8-15-1) ... Setting up r-cran-later (1.4.8+dfsg-1) ... Setting up r-cran-matrix (1.7-5-1) ... Setting up r-cran-spatstat.sparse (3.1-0-2) ... Setting up r-cran-here (1.0.2-1) ... Setting up r-cran-htmltools (0.5.9-2) ... Setting up r-cran-tinytex (0.58-1) ... Setting up r-cran-irlba (2.3.7-1) ... Setting up r-cran-kernsmooth (2.23-26-1) ... Setting up r-cran-knitr (1.51+dfsg-2) ... Setting up r-cran-rcpptoml (0.2.3+dfsg-2) ... Setting up r-cran-cachem (1.1.0-2) ... Setting up r-cran-lmtest (0.9.40-1) ... Setting up r-cran-sass (0.4.10+dfsg-1) ... Setting up r-cran-catools (1.18.3-2) ... Setting up r-cran-rtsne (0.17-2) ... Setting up r-cran-rcpparmadillo (15.2.6-1-1) ... Setting up r-cran-lazyeval (0.2.3-1) ... Setting up r-cran-dqrng (0.3.2+dfsg-2) ... Setting up r-cran-reticulate (1.46.0+dfsg-1) ... Setting up r-cran-globals (0.19.1-1) ... Setting up r-cran-spam (2.11-3-1) ... Setting up r-cran-gdata (3.0.1-1) ... Setting up r-cran-vctrs (0.7.3-1) ... Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... Setting up r-cran-pillar (1.11.1+dfsg-1) ... Setting up r-cran-rcppannoy (0.0.23-1) ... Setting up r-cran-openssl (2.4.0+dfsg-1) ... Setting up r-cran-stringr (1.6.0-1) ... Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ... Setting up r-cran-scattermore (1.2-2) ... Setting up r-cran-tibble (3.3.1+dfsg-2) ... Setting up r-cran-fontawesome (0.5.3-2) ... Setting up r-cran-survival (3.8-6-1) ... Setting up r-cran-igraph (2.3.0-1) ... Setting up r-cran-future (1.70.0+dfsg-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... Setting up r-cran-tidyselect (1.2.1+dfsg-2) ... Setting up r-cran-reshape2 (1.4.5-1) ... Setting up r-cran-future.apply (1.20.2+dfsg-1) ... Setting up r-cran-httr (1.4.8+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-promises (1.5.0+dfsg-1) ... Setting up r-cran-purrr (1.2.2-1) ... Setting up r-cran-ggrepel (0.9.8-1) ... Setting up r-cran-spatstat.data (3.1-9-1) ... Setting up r-cran-fastdummies (1.7.6-1) ... Setting up r-cran-seuratobject (5.4.0-1) ... Setting up r-cran-spatstat.geom (3.7-3-1) ... Setting up r-cran-dplyr (1.2.1-1) ... Setting up r-cran-rspectra (0.16-2-2) ... Setting up r-cran-gplots (3.3.0-1) ... Setting up r-cran-ggridges (0.5.7-1) ... Setting up r-cran-uwot (0.2.4-1) ... Setting up r-cran-cowplot (1.2.0+dfsg-1) ... Setting up r-cran-sctransform (0.4.3-1) ... Setting up r-cran-patchwork (1.3.2-1) ... Setting up r-cran-rocr (1.0-12-1) ... Setting up r-cran-fitdistrplus (1.2-6-1) ... Setting up r-cran-httpuv (1.6.16+dfsg-1) ... Setting up r-cran-spatstat.random (3.4-5-1) ... Setting up r-cran-bslib (0.10.0+dfsg-1) ... Setting up r-cran-spatstat.explore (3.8-0-1) ... Setting up r-cran-tidyr (1.3.2-2) ... Setting up r-cran-shiny (1.13.0+dfsg-1) ... Setting up r-cran-shinyjs (2.1.0-2) ... Setting up r-cran-miniui (0.1.2-1) ... Setting up r-cran-rmarkdown (2.30+dfsg-1) ... Setting up r-cran-crosstalk (1.2.2+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-2) ... Setting up r-cran-colourpicker (1.3.0+dfsg-2) ... Setting up r-cran-plotly (4.10.4+dfsg-4) ... Setting up r-cran-seurat (5.5.0-1) ... Processing triggers for libc-bin (2.42-15) ... Processing triggers for ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', '-y', 'install', 'r-cran-seurat=5.5.0-1'] 0m45.9s INFO: Running scripts post_install 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_install_exceptions'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_install_exceptions'] 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'systemd-tmpfiles', '--cat-config'] 0m45.9s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m45.9s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'systemd-tmpfiles', '--cat-config'] 0m46.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 0m48.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 0m52.0s ERROR: WARN: Broken symlinks: /usr/share/doc/r-base-core/NEWS.gz -> changelog.gz (r-base-core) /usr/share/doc/unzip/changelog.gz -> History.600.gz (unzip) /usr/share/doc/zip/changelog.gz -> CHANGES.gz (zip) /usr/share/doc/libxml2-16/NEWS.gz -> changelog.gz (libxml2-16:amd64) /usr/share/doc/python3.13/python-policy.txt.gz -> ../python3/python-policy.txt.gz (python3) /usr/share/doc/python3.13/changelog.gz -> NEWS.gz (python3.13) /usr/share/doc/perl/Changes.gz -> changelog.gz (perl) 0m54.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', '-ac', '--ignore-obsolete'] 0m58.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', '-ac', '--ignore-obsolete'] 0m58.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.8s DUMP: 0.15.9~deb12u1 0m58.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.8s INFO: Running adequate version 0.15.9~deb12u1 now. 0m58.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'r-cran-seurat'] 0m58.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'r-cran-seurat'] 0m58.9s INFO: Running scripts pre_remove 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_exceptions'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/pre_remove_exceptions'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m3.9s DUMP: install ok installed apt apt 3.3.0 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.42-5 install ok installed ca-certificates ca-certificates 20260223 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-4 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-7 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-17 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260425-1 install ok installed git git 1:2.53.0-1 install ok installed git-man git-man 1:2.53.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed javascript-common javascript-common 12+nmu1 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libamd3:amd64 libamd3 1:7.12.2+dfsg-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.0 install ok installed libasan8:amd64 libasan8 16-20260425-1 install ok installed libatomic1:amd64 libatomic1 16-20260425-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-7+b2 install ok installed libblkid1:amd64 libblkid1 2.42-5 install ok installed libboost-dev:amd64 libboost-dev 1.90.0.2 install ok installed libboost1.90-dev:amd64 libboost1.90-dev 1.90.0-6 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-15 install ok installed libc-dev-bin libc-dev-bin 2.42-15 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-15 install ok installed libc6:amd64 libc6 2.42-15 install ok installed libc6-dev:amd64 libc6-dev 2.42-15 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1 install ok installed libcolamd3:amd64 libcolamd3 1:7.12.2+dfsg-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.20.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.20.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b3 install ok installed libdeflate0:amd64 libdeflate0 1.23-2+b2 install ok installed liberror-perl liberror-perl 0.17030-1 install ok installed libexpat1:amd64 libexpat1 2.8.0-1 install ok installed libffi8:amd64 libffi8 3.5.2-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgcc-15-dev:amd64 libgcc-15-dev 15.2.0-17 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260425-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16-20260425-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.88.0-1 install ok installed libglpk40:amd64 libglpk40 5.0-2+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16-20260425-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-13 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhwasan0:amd64 libhwasan0 16-20260425-1 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu78:amd64 libicu78 78.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4+b2 install ok installed libitm1:amd64 libitm1 16-20260425-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-7 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.2+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 10.7.3+dfsg-4 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-2 install ok installed libjs-modernizr libjs-modernizr 3.13.0-0.1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-7 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-3 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2+b1 install ok installed liblapack3:amd64 liblapack3 3.12.1-7+b2 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1+b2 install ok installed liblerc4:amd64 liblerc4 4.1.0+ds-1 install ok installed liblsan0:amd64 liblsan0 16-20260425-1 install ok installed libltdl7:amd64 libltdl7 2.5.4-11 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.8-1+b2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.42-5 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.69.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.15.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.22.1-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.22.1-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.22.1-1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1+b2 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.2-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b2 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b2 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b2 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.57.1-2 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.57.1-2 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.57.1-2 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b3 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-7+b1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.58-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9+b2 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.5-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3+b1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.12-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.12-1 install ok installed libquadmath0:amd64 libquadmath0 16-20260425-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.10-1 install ok installed libsemanage-common libsemanage-common 3.10-1 install ok installed libsemanage2:amd64 libsemanage2 3.10-1 install ok installed libsepol2:amd64 libsepol2 3.10-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b2 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9+b1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.2-1 install ok installed libstdc++-15-dev:amd64 libstdc++-15-dev 15.2.0-17 install ok installed libstdc++6:amd64 libstdc++6 16-20260425-1 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.12.2+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 260.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.17+dfsg-1+b2 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libthai-data libthai-data 0.1.30-1 install ok installed libthai0:amd64 libthai0 0.1.30-1+b1 install ok installed libtiff6:amd64 libtiff6 4.7.1-2 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1+b1 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.17-1+b2 install ok installed libtsan2:amd64 libtsan2 16-20260425-1 install ok installed libubsan1:amd64 libubsan1 16-20260425-1 install ok installed libudev1:amd64 libudev1 260.1-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42-5 install ok installed libuv1t64:amd64 libuv1t64 1.51.0-2+b2 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2-16:amd64 libxml2-16 2.15.2+dfsg-0.1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b2 install ok installed linux-libc-dev linux-libc-dev 7.0.3-1 install ok installed login login 1:4.16.0-2+really2.42-5 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42-5 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1+b1 install ok installed netbase netbase 6.5 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5.1 install ok installed openssl openssl 3.6.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.2-1 install ok installed pandoc pandoc 3.9.0.2-1 install ok installed pandoc-data pandoc-data 3.9.0.2-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl perl 5.40.1-7+b1 install ok installed perl-base perl-base 5.40.1-7+b1 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-7 install ok installed procps procps 2:4.0.4-9+b2 install ok installed python3 python3 3.13.9-3+b1 install ok installed python3-minimal python3-minimal 3.13.9-3+b1 install ok installed python3.13 python3.13 3.13.12-1 install ok installed python3.13-minimal python3.13-minimal 3.13.12-1 install ok installed r-base-core r-base-core 4.6.0-2 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-6-2 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bitops r-cran-bitops 1.0-9-2 install ok installed r-cran-bslib r-cran-bslib 0.10.0+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-2 install ok installed r-cran-catools r-cran-catools 1.18.3-2 install ok installed r-cran-cli r-cran-cli 3.6.6-1 install ok installed r-cran-cluster r-cran-cluster 2.1.8.2-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-colourpicker r-cran-colourpicker 1.3.0+dfsg-2 install ok installed r-cran-commonmark r-cran-commonmark 2.0.0-2 install ok installed r-cran-cowplot r-cran-cowplot 1.2.0+dfsg-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.4-2 install ok installed r-cran-crosstalk r-cran-crosstalk 1.2.2+dfsg-1 install ok installed r-cran-curl r-cran-curl 7.1.0+dfsg-1 install ok installed r-cran-data.table r-cran-data.table 1.18.2.1+dfsg-3 install ok installed r-cran-deldir r-cran-deldir 2.0-4-2 install ok installed r-cran-digest r-cran-digest 0.6.39-1 install ok installed r-cran-dotcall64 r-cran-dotcall64 1.2-2 install ok installed r-cran-dplyr r-cran-dplyr 1.2.1-1 install ok installed r-cran-dqrng r-cran-dqrng 0.3.2+dfsg-2 install ok installed r-cran-evaluate r-cran-evaluate 1.0.5-2 install ok installed r-cran-farver r-cran-farver 2.1.2-3 install ok installed r-cran-fastdummies r-cran-fastdummies 1.7.6-1 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-2 install ok installed r-cran-fitdistrplus r-cran-fitdistrplus 1.2-6-1 install ok installed r-cran-fnn r-cran-fnn 1.1.4.1-2 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.3-2 install ok installed r-cran-fs r-cran-fs 1.6.7+dfsg-2 install ok installed r-cran-future r-cran-future 1.70.0+dfsg-1 install ok installed r-cran-future.apply r-cran-future.apply 1.20.2+dfsg-1 install ok installed r-cran-gdata r-cran-gdata 3.0.1-1 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 4.0.2+dfsg-1 install ok installed r-cran-ggrepel r-cran-ggrepel 0.9.8-1 install ok installed r-cran-ggridges r-cran-ggridges 0.5.7-1 install ok installed r-cran-globals r-cran-globals 0.19.1-1 install ok installed r-cran-glue r-cran-glue 1.8.1-1 install ok installed r-cran-goftest r-cran-goftest 1.2-3-2 install ok installed r-cran-gplots r-cran-gplots 3.3.0-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-3 install ok installed r-cran-gtable r-cran-gtable 0.3.6+dfsg-2 install ok installed r-cran-gtools r-cran-gtools 3.9.5-1 install ok installed r-cran-here r-cran-here 1.0.2-1 install ok installed r-cran-highr r-cran-highr 0.12+dfsg-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.9-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-2 install ok installed r-cran-httpuv r-cran-httpuv 1.6.16+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.8+dfsg-1 install ok installed r-cran-ica r-cran-ica 1.0-3-2 install ok installed r-cran-igraph r-cran-igraph 2.3.0-1 install ok installed r-cran-irlba r-cran-irlba 2.3.7-1 install ok installed r-cran-isoband r-cran-isoband 0.3.0-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-5 install ok installed r-cran-jsonlite r-cran-jsonlite 2.0.0+dfsg-2 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-26-1 install ok installed r-cran-knitr r-cran-knitr 1.51+dfsg-2 install ok installed r-cran-labeling r-cran-labeling 0.4.3-2 install ok installed r-cran-later r-cran-later 1.4.8+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.22-9-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.3-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-listenv r-cran-listenv 0.10.1+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.23-1 install ok installed r-cran-lmtest r-cran-lmtest 0.9.40-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.5-1 install ok installed r-cran-mass r-cran-mass 7.3-65-1 install ok installed r-cran-matrix r-cran-matrix 1.7-5-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-2 install ok installed r-cran-memoise r-cran-memoise 2.0.1-2 install ok installed r-cran-mime r-cran-mime 0.13-2 install ok installed r-cran-miniui r-cran-miniui 0.1.2-1 install ok installed r-cran-nlme r-cran-nlme 3.1.169-1 install ok installed r-cran-openssl r-cran-openssl 2.4.0+dfsg-1 install ok installed r-cran-otel r-cran-otel 0.2.0-1 install ok installed r-cran-parallelly r-cran-parallelly 1.46.0-2 install ok installed r-cran-patchwork r-cran-patchwork 1.3.2-1 install ok installed r-cran-pbapply r-cran-pbapply 1.7-2-2 install ok installed r-cran-pillar r-cran-pillar 1.11.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-plotly r-cran-plotly 4.10.4+dfsg-4 install ok installed r-cran-plyr r-cran-plyr 1.8.9-2 install ok installed r-cran-png r-cran-png 0.1-9-1 install ok installed r-cran-polyclip r-cran-polyclip 1.10-7-2 install ok installed r-cran-progressr r-cran-progressr 0.18.0-1 install ok installed r-cran-promises r-cran-promises 1.5.0+dfsg-1 install ok installed r-cran-purrr r-cran-purrr 1.2.2-1 install ok installed r-cran-r6 r-cran-r6 2.6.1-2 install ok installed r-cran-rann r-cran-rann 2.6.2-2 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.4-2 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-2 install ok installed r-cran-rcpp r-cran-rcpp 1.1.1-1.1-1 install ok installed r-cran-rcppannoy r-cran-rcppannoy 0.0.23-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 15.2.6-1-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.4.0.2-1 install ok installed r-cran-rcpphnsw r-cran-rcpphnsw 0.6.0+ds-2 install ok installed r-cran-rcppprogress r-cran-rcppprogress 0.4.2-3 install ok installed r-cran-rcpptoml r-cran-rcpptoml 0.2.3+dfsg-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.5-1 install ok installed r-cran-reticulate r-cran-reticulate 1.46.0+dfsg-1 install ok installed r-cran-rlang r-cran-rlang 1.2.0-3 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.30+dfsg-1 install ok installed r-cran-rocr r-cran-rocr 1.0-12-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.1.1-1 install ok installed r-cran-rspectra r-cran-rspectra 0.16-2-2 install ok installed r-cran-rtsne r-cran-rtsne 0.17-2 install ok installed r-cran-s7 r-cran-s7 0.2.2-1 install ok installed r-cran-sass r-cran-sass 0.4.10+dfsg-1 install ok installed r-cran-scales r-cran-scales 1.4.0-1 install ok installed r-cran-scattermore r-cran-scattermore 1.2-2 install ok installed r-cran-sctransform r-cran-sctransform 0.4.3-1 install ok installed r-cran-seurat r-cran-seurat 5.5.0-1 install ok installed r-cran-seuratobject r-cran-seuratobject 5.4.0-1 install ok installed r-cran-shiny r-cran-shiny 1.13.0+dfsg-1 install ok installed r-cran-shinyjs r-cran-shinyjs 2.1.0-2 install ok installed r-cran-sitmo r-cran-sitmo 2.0.2-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-2-1 install ok installed r-cran-sp r-cran-sp 1:2.2-1+dfsg-1 install ok installed r-cran-spam r-cran-spam 2.11-3-1 install ok installed r-cran-spatstat.data r-cran-spatstat.data 3.1-9-1 install ok installed r-cran-spatstat.explore r-cran-spatstat.explore 3.8-0-1 install ok installed r-cran-spatstat.geom r-cran-spatstat.geom 3.7-3-1 install ok installed r-cran-spatstat.random r-cran-spatstat.random 3.4-5-1 install ok installed r-cran-spatstat.sparse r-cran-spatstat.sparse 3.1-0-2 install ok installed r-cran-spatstat.univar r-cran-spatstat.univar 3.1-7-1 install ok installed r-cran-spatstat.utils r-cran-spatstat.utils 3.2-2-1 install ok installed r-cran-stringi r-cran-stringi 1.8.7-2 install ok installed r-cran-stringr r-cran-stringr 1.6.0-1 install ok installed r-cran-survival r-cran-survival 3.8-6-1 install ok installed r-cran-sys r-cran-sys 3.4.3-2 install ok installed r-cran-tensor r-cran-tensor 1.5.1-1 install ok installed r-cran-tibble r-cran-tibble 3.3.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.2-2 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-2 install ok installed r-cran-tinytex r-cran-tinytex 0.58-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.6-2 install ok installed r-cran-uwot r-cran-uwot 0.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.7.3-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.3-1 install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-2 install ok installed r-cran-xfun r-cran-xfun 0.57+dfsg-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-8-1 install ok installed r-cran-yaml r-cran-yaml 2.3.12-1 install ok installed r-cran-zoo r-cran-zoo 1.8-15-1 install ok installed readline-common readline-common 8.3-4 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-5+b1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026b-1 install ok installed ucf ucf 3.0053 install ok installed unzip unzip 6.0-29 install ok installed util-linux util-linux 2.42-5 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-15 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'git', 'git-man', 'javascript-common', 'libamd3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-cran-abind', 'r-cran-askpass', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-catools', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dotcall64', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastdummies', 'r-cran-fastmap', 'r-cran-fitdistrplus', 'r-cran-fnn', 'r-cran-fontawesome', 'r-cran-fs', 'r-cran-future', 'r-cran-future.apply', 'r-cran-gdata', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggridges', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-here', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ica', 'r-cran-igraph', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lmtest', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-miniui', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-patchwork', 'r-cran-pbapply', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-progressr', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rocr', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-scattermore', 'r-cran-sctransform', 'r-cran-seuratobject', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatstat.data', 'r-cran-spatstat.explore', 'r-cran-spatstat.geom', 'r-cran-spatstat.random', 'r-cran-spatstat.sparse', 'r-cran-spatstat.univar', 'r-cran-spatstat.utils', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tensor', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-cran-seurat'] 1m8.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-15-base git git-man javascript-common libamd3 libasan8 libatomic1 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcolamd3 libcom-err2 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdeflate0 liberror-perl libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-15-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu78 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-15-dev libsuitesparseconfig7 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 libyaml-0-2 linux-libc-dev media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data perl perl-modules-5.40 procps python3 python3-minimal python3.13 python3.13-minimal r-base-core r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colourpicker r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deldir r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng r-cran-evaluate r-cran-farver r-cran-fastdummies r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome r-cran-fs r-cran-future r-cran-future.apply r-cran-gdata r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-here r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-miniui r-cran-nlme r-cran-openssl r-cran-otel r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-png r-cran-polyclip r-cran-progressr r-cran-promises r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rtsne r-cran-s7 r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-seurat r-cran-seuratobject r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-zoo readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 311 to remove and 0 not upgraded. After this operation, 1084 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56761 files and directories currently installed.) Removing r-cran-seurat (5.5.0-1) ... Removing r-cran-seuratobject (5.4.0-1) ... Removing r-cran-fitdistrplus (1.2-6-1) ... Removing r-cran-survival (3.8-6-1) ... Removing r-cran-spatstat.explore (3.8-0-1) ... Removing r-cran-spatstat.sparse (3.1-0-2) ... Removing r-cran-abind (1.4-8-1) ... Removing r-cran-igraph (2.3.0-1) ... Removing r-cran-spam (2.11-3-1) ... Removing r-cran-plotly (4.10.4+dfsg-4) ... Removing r-cran-colourpicker (1.3.0+dfsg-2) ... Removing r-cran-shinyjs (2.1.0-2) ... Removing r-cran-htmlwidgets (1.6.4+dfsg-2) ... Removing r-cran-rmarkdown (2.30+dfsg-1) ... Removing r-cran-knitr (1.51+dfsg-2) ... Removing r-cran-crosstalk (1.2.2+dfsg-1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing r-cran-uwot (0.2.4-1) ... Removing r-cran-dqrng (0.3.2+dfsg-2) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.90.0.2) ... Removing libboost1.90-dev:amd64 (1.90.0-6) ... Removing libstdc++-15-dev:amd64 (15.2.0-17) ... Removing libgcc-15-dev:amd64 (15.2.0-17) ... Removing gcc-15-base:amd64 (15.2.0-17) ... Removing r-cran-tinytex (0.58-1) ... Removing r-cran-highr (0.12+dfsg-1) ... Removing r-cran-xfun (0.57+dfsg-1) ... Removing r-cran-reticulate (1.46.0+dfsg-1) ... Removing git (1:2.53.0-1) ... Removing git-man (1:2.53.0-1) ... Removing libglpk40:amd64 (5.0-2+b2) ... Removing libamd3:amd64 (1:7.12.2+dfsg-1) ... Removing libasan8:amd64 (16-20260425-1) ... Removing r-cran-sctransform (0.4.3-1) ... Removing r-cran-rtsne (0.17-2) ... Removing r-cran-rspectra (0.16-2-2) ... Removing r-cran-httr (1.4.8+dfsg-1) ... Removing r-cran-curl (7.1.0+dfsg-1) ... Removing libc6-dev:amd64 (2.42-15) ... Removing libc-dev-bin (2.42-15) ... Removing libcolamd3:amd64 (1:7.12.2+dfsg-1) ... Removing libcurl3t64-gnutls:amd64 (8.20.0-1) ... Removing liberror-perl (0.17030-1) ... Removing python3 (3.13.9-3+b1) ... Removing python3.13 (3.13.12-1) ... Removing python3-minimal (3.13.9-3+b1) ... Removing python3.13-minimal (3.13.12-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3+b1) ... Removing libpython3.13-stdlib:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing pandoc (3.9.0.2-1) ... Removing perl (5.40.1-7+b1) ... Removing libperl5.40:amd64 (5.40.1-7+b1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing r-cran-rcppeigen (0.3.4.0.2-1) ... Removing r-cran-rcpparmadillo (15.2.6-1-1) ... Removing r-cran-irlba (2.3.7-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.22.1-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libsuitesparseconfig7:amd64 (1:7.12.2+dfsg-1) ... Removing r-cran-sitmo (2.0.2-2) ... Removing libhwasan0:amd64 (16-20260425-1) ... Removing r-cran-tidyr (1.3.2-2) ... Removing r-cran-reshape2 (1.4.5-1) ... Removing libitm1:amd64 (16-20260425-1) ... Removing libjs-modernizr (3.13.0-0.1) ... Removing libjs-prettify (2015.12.04+dfsg-3) ... Removing liblsan0:amd64 (16-20260425-1) ... Removing libltdl7:amd64 (2.5.4-11) ... Removing liblua5.4-0:amd64 (5.4.8-1+b2) ... Removing libnuma1:amd64 (2.0.19-1+b2) ... Removing libp11-kit0:amd64 (0.26.2-2) ... Removing r-cran-png (0.1-9-1) ... Removing libpython3.13-minimal:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (16-20260425-1) ... Removing libsqlite3-0:amd64 (3.46.1-9+b1) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libtsan2:amd64 (16-20260425-1) ... Removing libubsan1:amd64 (16-20260425-1) ... Removing libxml2-16:amd64 (2.15.2+dfsg-0.1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing linux-libc-dev (7.0.3-1) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing pandoc-data (3.9.0.2-1) ... Removing perl-modules-5.40 (5.40.1-7) ... Removing r-cran-openssl (2.4.0+dfsg-1) ... Removing r-cran-askpass (1.2.1-2) ... Removing r-cran-miniui (0.1.2-1) ... Removing r-cran-rocr (1.0-12-1) ... Removing r-cran-gplots (3.3.0-1) ... Removing r-cran-catools (1.18.3-2) ... Removing r-cran-bitops (1.0-9-2) ... Removing r-cran-dplyr (1.2.1-1) ... Removing r-cran-tidyselect (1.2.1+dfsg-2) ... Removing r-cran-fastdummies (1.7.6-1) ... Removing r-cran-tibble (3.3.1+dfsg-2) ... Removing r-cran-ggridges (0.5.7-1) ... Removing r-cran-cluster (2.1.8.2-1) ... Removing r-cran-future.apply (1.20.2+dfsg-1) ... Removing r-cran-future (1.70.0+dfsg-1) ... Removing r-cran-globals (0.19.1-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-cowplot (1.2.0+dfsg-1) ... Removing r-cran-scattermore (1.2-2) ... Removing r-cran-patchwork (1.3.2-1) ... Removing r-cran-data.table (1.18.2.1+dfsg-3) ... Removing r-cran-spatstat.random (3.4-5-1) ... Removing r-cran-spatstat.geom (3.7-3-1) ... Removing r-cran-deldir (2.0-4-2) ... Removing r-cran-progressr (0.18.0-1) ... Removing r-cran-dotcall64 (1.2-2) ... Removing r-cran-evaluate (1.0.5-2) ... Removing r-cran-fnn (1.1.4.1-2) ... Removing r-cran-gdata (3.0.1-1) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-ggrepel (0.9.8-1) ... Removing r-cran-pillar (1.11.1+dfsg-1) ... Removing r-cran-gridextra (2.3-3) ... Removing r-cran-goftest (1.2-3-2) ... Removing r-cran-gtools (3.9.5-1) ... Removing r-cran-here (1.0.2-1) ... Removing r-cran-ica (1.0-3-2) ... Removing r-cran-kernsmooth (2.23-26-1) ... Removing r-cran-lmtest (0.9.40-1) ... Removing r-cran-zoo (1.8-15-1) ... Removing r-cran-nlme (3.1.169-1) ... Removing r-cran-lazyeval (0.2.3-1) ... Removing r-cran-purrr (1.2.2-1) ... Removing r-cran-listenv (0.10.1+dfsg-1) ... Removing r-cran-mass (7.3-65-1) ... Removing r-cran-matrixstats (1.5.0-2) ... Removing r-cran-parallelly (1.46.0-2) ... Removing r-cran-pbapply (1.7-2-2) ... Removing r-cran-plyr (1.8.9-2) ... Removing r-cran-polyclip (1.10-7-2) ... Removing r-cran-rann (2.6.2-2) ... Removing r-cran-rcppannoy (0.0.23-1) ... Removing r-cran-rcpphnsw (0.6.0+ds-2) ... Removing r-cran-rcppprogress (0.4.2-3) ... Removing r-cran-rcpptoml (0.2.3+dfsg-2) ... Removing r-cran-rprojroot (2.1.1-1) ... Removing r-cran-sp (1:2.2-1+dfsg-1) ... Removing r-cran-spatstat.data (3.1-9-1) ... Removing r-cran-spatstat.univar (3.1-7-1) ... Removing r-cran-spatstat.utils (3.2-2-1) ... Removing r-cran-sys (3.4.3-2) ... Removing r-cran-tensor (1.5.1-1) ... Removing r-cran-utf8 (1.2.6-2) ... Removing r-cran-yaml (2.3.12-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing r-cran-matrix (1.7-5-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-shiny (1.13.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing r-cran-bslib (0.10.0+dfsg-1) ... Removing libjs-bootstrap4 (4.6.2+dfsg-2) ... Removing libjs-popper.js (1.16.1+ds-7) ... Removing javascript-common (12+nmu1) ... Removing r-cran-stringr (1.6.0-1) ... Removing r-cran-stringi (1.8.7-2) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing libjs-highlight.js (10.7.3+dfsg-4) ... Removing r-cran-jquerylib (0.1.4+dfsg-5) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-2) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing r-cran-httpuv (1.6.16+dfsg-1) ... Removing r-cran-sass (0.4.10+dfsg-1) ... Removing r-cran-fs (1.6.7+dfsg-2) ... Removing libuv1t64:amd64 (1.51.0-2+b2) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5.1) ... Removing r-cran-fontawesome (0.5.3-2) ... Removing r-cran-htmltools (0.5.9-2) ... Removing r-cran-base64enc (0.1-6-2) ... Removing r-cran-memoise (2.0.1-2) ... Removing r-cran-cachem (1.1.0-2) ... Removing r-cran-commonmark (2.0.0-2) ... Removing r-cran-ggplot2 (4.0.2+dfsg-1) ... Removing r-cran-isoband (0.3.0-1) ... Removing r-cran-cpp11 (0.5.4-2) ... Removing r-cran-digest (0.6.39-1) ... Removing r-cran-promises (1.5.0+dfsg-1) ... Removing r-cran-fastmap (1.2.0-2) ... Removing r-cran-gtable (0.3.6+dfsg-2) ... Removing r-cran-jsonlite (2.0.0+dfsg-2) ... Removing r-cran-later (1.4.8+dfsg-1) ... Removing r-cran-lattice (0.22-9-1) ... Removing r-cran-magrittr (2.0.5-1) ... Removing r-cran-mime (0.13-2) ... Removing r-cran-otel (0.2.0-1) ... Removing r-cran-rappdirs (0.3.4-2) ... Removing r-cran-s7 (0.2.2-1) ... Removing r-cran-sourcetools (0.1.7-2-1) ... Removing r-cran-withr (3.0.2+dfsg-2) ... Removing r-cran-xtable (1:1.8-8-1) ... Removing r-cran-rcpp (1.1.1-1.1-1) ... Removing libjs-bootstrap (3.4.1+dfsg-7) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing r-cran-vctrs (0.7.3-1) ... Removing r-cran-scales (1.4.0-1) ... Removing r-cran-farver (2.1.2-3) ... Removing r-cran-glue (1.8.1-1) ... Removing r-cran-labeling (0.4.3-2) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-littler (0.3.23-1) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-r6 (2.6.1-2) ... Removing r-cran-rcolorbrewer (1.1-3-2) ... Removing r-cran-rlang (1.2.0-3) ... Removing r-cran-viridislite (0.4.3-1) ... Removing r-cran-cli (3.6.6-1) ... Removing r-base-core (4.6.0-2) ... Removing ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.57.1-2) ... Removing libpangoft2-1.0-0:amd64 (1.57.1-2) ... Removing libpango-1.0-0:amd64 (1.57.1-2) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.17-1+b2) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.88.0-1) ... Removing libatomic1:amd64 (16-20260425-1) ... Removing libfreetype6:amd64 (2.14.3+dfsg-1) ... Removing libcurl4t64:amd64 (8.20.0-1) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.22.1-2+b1) ... Removing libkrb5-3:amd64 (1.22.1-2+b1) ... Removing libcom-err2:amd64 (1.47.4-1) ... Removing libthai0:amd64 (0.1.30-1+b1) ... Removing libdatrie1:amd64 (0.2.14-1+b1) ... Removing libtiff6:amd64 (4.7.1-2) ... Removing libdeflate0:amd64 (1.23-2+b2) ... Removing libexpat1:amd64 (2.8.0-1) ... Removing libffi8:amd64 (3.5.2-4) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing liblapack3:amd64 (3.12.1-7+b2) ... Removing libgfortran5:amd64 (16-20260425-1) ... Removing libgomp1:amd64 (16-20260425-1) ... Removing libgraphite2-3:amd64 (1.3.14-13) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-1) ... Removing libpsl5t64:amd64 (0.21.5-1) ... Removing libidn2-0:amd64 (2.3.8-4+b2) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-2+b1) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-2+b1) ... Removing libldap2:amd64 (2.6.10+dfsg-1+b2) ... Removing liblerc4:amd64 (4.1.0+ds-1) ... Removing ucf (3.0053) ... Removing procps (2:4.0.4-9+b2) ... Removing libncursesw6:amd64 (6.6+20251231-1+b1) ... Removing libnghttp2-14:amd64 (1.69.0-1) ... Removing libnghttp3-9:amd64 (1.15.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.22.1-1) ... Removing libngtcp2-16:amd64 (1.22.1-1) ... Removing libpaper-utils (2.2.5-0.3+b3) ... Removing libpaper2:amd64 (2.2.5-0.3+b3) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libpng16-16t64:amd64 (1.6.58-1) ... Removing libproc2-0:amd64 (2:4.0.4-9+b2) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebp7:amd64 (1.5.0-0.1+b2) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Removing libssh2-1t64:amd64 (1.11.1-2) ... Removing libtcl8.6:amd64 (8.6.17+dfsg-1+b2) ... Removing libtext-wrapi18n-perl (0.06-10) ... Removing libtext-charwidth-perl:amd64 (0.04-11+b5) ... Removing libthai-data (0.1.30-1) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing openssl (3.6.2-1) ... Removing readline-common (8.3-4) ... Removing sensible-utils (0.0.26) ... Removing unzip (6.0-29) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-15) ... Removing libblas3:amd64 (3.12.1-7+b2) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Processing triggers for libc-bin (2.42-15) ... 1m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'git', 'git-man', 'javascript-common', 'libamd3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-cran-abind', 'r-cran-askpass', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-catools', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dotcall64', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastdummies', 'r-cran-fastmap', 'r-cran-fitdistrplus', 'r-cran-fnn', 'r-cran-fontawesome', 'r-cran-fs', 'r-cran-future', 'r-cran-future.apply', 'r-cran-gdata', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggridges', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-here', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ica', 'r-cran-igraph', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lmtest', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-miniui', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-patchwork', 'r-cran-pbapply', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-progressr', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rocr', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-scattermore', 'r-cran-sctransform', 'r-cran-seuratobject', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatstat.data', 'r-cran-spatstat.explore', 'r-cran-spatstat.geom', 'r-cran-spatstat.random', 'r-cran-spatstat.sparse', 'r-cran-spatstat.univar', 'r-cran-spatstat.utils', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tensor', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-cran-seurat'] 1m8.1s INFO: Running scripts post_remove 1m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_remove_exceptions'] 1m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_remove_exceptions'] 1m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'git', 'git-man', 'javascript-common', 'libamd3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-cran-abind', 'r-cran-askpass', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-catools', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dotcall64', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastdummies', 'r-cran-fastmap', 'r-cran-fitdistrplus', 'r-cran-fnn', 'r-cran-fontawesome', 'r-cran-fs', 'r-cran-future', 'r-cran-future.apply', 'r-cran-gdata', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggridges', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-here', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ica', 'r-cran-igraph', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lmtest', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-miniui', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-patchwork', 'r-cran-pbapply', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-progressr', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rocr', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-scattermore', 'r-cran-sctransform', 'r-cran-seuratobject', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatstat.data', 'r-cran-spatstat.explore', 'r-cran-spatstat.geom', 'r-cran-spatstat.random', 'r-cran-spatstat.sparse', 'r-cran-spatstat.univar', 'r-cran-spatstat.utils', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tensor', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m8.7s DUMP: (Reading database ... 4978 files and directories currently installed.) Purging configuration files for ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which is not installed dpkg: warning: ignoring request to remove fonts-mathjax which is not installed dpkg: warning: ignoring request to remove gcc-15-base which is not installed Purging configuration files for git (1:2.53.0-1) ... dpkg: warning: ignoring request to remove git-man which is not installed Purging configuration files for javascript-common (12+nmu1) ... dpkg: warning: ignoring request to remove libamd3 which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libboost-dev which is not installed dpkg: warning: ignoring request to remove libboost1.90-dev which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcolamd3 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove liberror-perl which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgcc-15-dev which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.88.0-1) ... dpkg: warning: ignoring request to remove libglpk40 which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-2+b1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libice6 which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libjs-bootstrap which is not installed Purging configuration files for libjs-bootstrap4 (4.6.2+dfsg-2) ... dpkg: warning: ignoring request to remove libjs-d3 which is not installed dpkg: warning: ignoring request to remove libjs-es5-shim which is not installed dpkg: warning: ignoring request to remove libjs-highlight.js which is not installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libjs-jquery-datatables which is not installed dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which is not installed dpkg: warning: ignoring request to remove libjs-jquery-ui which is not installed dpkg: warning: ignoring request to remove libjs-json which is not installed dpkg: warning: ignoring request to remove libjs-mathjax which is not installed dpkg: warning: ignoring request to remove libjs-microplugin.js which is not installed dpkg: warning: ignoring request to remove libjs-modernizr which is not installed Purging configuration files for libjs-popper.js (1.16.1+ds-7) ... dpkg: warning: ignoring request to remove libjs-prettify which is not installed dpkg: warning: ignoring request to remove libjs-sifter.js which is not installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which is not installed dpkg: warning: ignoring 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request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libnuma1 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b3) ... dpkg: warning: ignoring request to remove libperl5.40 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libproc2-0 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.12-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libstdc++-15-dev which is not installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libtext-charwidth-perl which is not installed dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove node-bootstrap-sass which is not installed dpkg: warning: ignoring request to remove node-html5shiv which is not installed dpkg: warning: ignoring request to remove node-normalize.css which is not installed Purging configuration files for openssl (3.6.2-1) ... dpkg: warning: ignoring request to remove pandoc which is not installed dpkg: warning: ignoring request to remove pandoc-data which is not installed Purging configuration files for perl (5.40.1-7+b1) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which is not installed Purging configuration files for procps (2:4.0.4-9+b2) ... Purging configuration files for python3 (3.13.9-3+b1) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.13 which is not installed Purging configuration files for python3.13-minimal (3.13.12-1) ... Purging configuration files for r-base-core (4.6.0-2) ... dpkg: warning: ignoring request to remove r-cran-abind which is not installed dpkg: warning: ignoring request to remove r-cran-askpass which is not installed dpkg: warning: ignoring request to remove r-cran-base64enc which is not installed dpkg: warning: ignoring request to remove r-cran-bh which is not installed dpkg: warning: ignoring request to remove r-cran-bitops which is not installed dpkg: warning: ignoring request to remove r-cran-bslib which is not installed dpkg: warning: ignoring request to remove r-cran-cachem which is not installed dpkg: warning: ignoring request to remove r-cran-catools which is not installed dpkg: warning: ignoring request to remove r-cran-cli which is not installed dpkg: warning: ignoring request to remove r-cran-cluster which is not installed dpkg: warning: ignoring request to remove r-cran-codetools which is not installed dpkg: warning: ignoring request to remove r-cran-colourpicker which is not installed dpkg: warning: ignoring request to remove r-cran-commonmark which is not installed dpkg: warning: ignoring request to remove r-cran-cowplot which is not installed dpkg: warning: ignoring request to remove r-cran-cpp11 which is not installed dpkg: warning: ignoring request to remove r-cran-crosstalk which is not installed dpkg: warning: ignoring request to remove r-cran-curl which is not installed dpkg: warning: ignoring request to remove r-cran-data.table which is not installed dpkg: warning: ignoring request to remove r-cran-deldir which is not installed dpkg: warning: ignoring request to remove r-cran-digest which is not installed dpkg: warning: ignoring request to remove r-cran-dotcall64 which is not installed dpkg: warning: ignoring request to remove r-cran-dplyr which is not installed dpkg: warning: ignoring request to remove r-cran-dqrng which is not installed dpkg: warning: ignoring request to remove r-cran-evaluate which is not installed dpkg: warning: ignoring request to remove r-cran-farver which is not installed dpkg: warning: ignoring request to remove r-cran-fastdummies which is not installed dpkg: warning: ignoring request to remove r-cran-fastmap which is not installed dpkg: warning: ignoring request to remove r-cran-fitdistrplus which is not installed dpkg: warning: ignoring request to remove r-cran-fnn which is not installed dpkg: warning: ignoring request to remove r-cran-fontawesome which is not installed dpkg: warning: ignoring request to remove r-cran-fs which is not installed dpkg: warning: ignoring request to remove r-cran-future which is not installed dpkg: warning: ignoring request to remove r-cran-future.apply which is not installed dpkg: warning: ignoring request to remove r-cran-gdata which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which is not installed dpkg: warning: ignoring request to remove r-cran-ggrepel which is not installed dpkg: warning: ignoring request to remove r-cran-ggridges which is not installed dpkg: warning: ignoring request to remove r-cran-globals which is not installed dpkg: warning: ignoring request to remove r-cran-glue which is not installed dpkg: warning: ignoring request to remove r-cran-goftest which is not installed dpkg: warning: ignoring request to remove r-cran-gplots which is not installed dpkg: warning: ignoring request to remove r-cran-gridextra which is not installed dpkg: warning: ignoring request to remove r-cran-gtable which is not installed dpkg: warning: ignoring request to remove r-cran-gtools which is not installed dpkg: warning: ignoring request to remove r-cran-here which is not installed dpkg: warning: ignoring request to remove r-cran-highr which is not installed dpkg: warning: ignoring request to remove r-cran-htmltools which is not installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which is not installed dpkg: warning: ignoring request to remove r-cran-httpuv which is not installed dpkg: warning: ignoring request to remove r-cran-httr which is not installed dpkg: warning: ignoring request to remove r-cran-ica which is not installed dpkg: warning: ignoring request to remove r-cran-igraph which is not installed dpkg: warning: ignoring request to remove r-cran-irlba which is not installed dpkg: warning: ignoring request to remove r-cran-isoband which is not installed dpkg: warning: ignoring request to remove r-cran-jquerylib which is not installed dpkg: warning: ignoring request to remove r-cran-jsonlite which is not installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which is not installed dpkg: warning: ignoring request to remove r-cran-knitr which is not installed dpkg: warning: ignoring request to remove r-cran-labeling which is not installed dpkg: warning: ignoring request to remove r-cran-later which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-lazyeval which is not installed dpkg: warning: ignoring request to remove r-cran-lifecycle which is not installed dpkg: warning: ignoring request to remove r-cran-listenv which is not installed dpkg: warning: ignoring request to remove r-cran-littler which is not installed dpkg: warning: ignoring request to remove r-cran-lmtest which is not installed dpkg: warning: ignoring request to remove r-cran-magrittr which is not installed dpkg: warning: ignoring request to remove r-cran-mass which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-matrixstats which is not installed dpkg: warning: ignoring request to remove r-cran-memoise which is not installed dpkg: warning: ignoring request to remove r-cran-mime which is not installed dpkg: warning: ignoring request to remove r-cran-miniui which is not installed dpkg: warning: ignoring request to remove r-cran-nlme which is not installed dpkg: warning: ignoring request to remove r-cran-openssl which is not installed dpkg: warning: ignoring request to remove r-cran-otel which is not installed dpkg: warning: ignoring request to remove r-cran-parallelly which is not installed dpkg: warning: ignoring request to remove r-cran-patchwork which is not installed dpkg: warning: ignoring request to remove r-cran-pbapply which is not installed dpkg: warning: ignoring request to remove r-cran-pillar which is not installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which is not installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which is not installed dpkg: warning: ignoring request to remove r-cran-plotly which is not installed dpkg: warning: ignoring request to remove r-cran-plyr which is not installed dpkg: warning: ignoring request to remove r-cran-png which is not installed dpkg: warning: ignoring request to remove r-cran-polyclip which is not installed dpkg: warning: ignoring request to remove r-cran-progressr which is not installed dpkg: warning: ignoring request to remove r-cran-promises which is not installed dpkg: warning: ignoring request to remove r-cran-purrr which is not installed dpkg: warning: ignoring request to remove r-cran-r6 which is not installed dpkg: warning: ignoring request to remove r-cran-rann which is not installed dpkg: warning: ignoring request to remove r-cran-rappdirs which is not installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which is not installed dpkg: warning: ignoring request to remove r-cran-rcpp which is not installed dpkg: warning: ignoring request to remove r-cran-rcppannoy which is not installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which is not installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which is not installed dpkg: warning: ignoring request to remove r-cran-rcpphnsw which is not installed dpkg: warning: ignoring request to remove r-cran-rcppprogress which is not installed dpkg: warning: ignoring request to remove r-cran-rcpptoml which is not installed dpkg: warning: ignoring request to remove r-cran-reshape2 which is not installed dpkg: warning: ignoring request to remove r-cran-reticulate which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which is not installed dpkg: warning: ignoring request to remove r-cran-rocr which is not installed dpkg: warning: ignoring request to remove r-cran-rprojroot which is not installed dpkg: warning: ignoring request to remove r-cran-rspectra which is not installed dpkg: warning: ignoring request to remove r-cran-rtsne which is not installed dpkg: warning: ignoring request to remove r-cran-s7 which is not installed dpkg: warning: ignoring request to remove r-cran-sass which is not installed dpkg: warning: ignoring request to remove r-cran-scales which is not installed dpkg: warning: ignoring request to remove r-cran-scattermore which is not installed dpkg: warning: ignoring request to remove r-cran-sctransform which is not installed dpkg: warning: ignoring request to remove r-cran-seuratobject which is not installed dpkg: warning: ignoring request to remove r-cran-shiny which is not installed dpkg: warning: ignoring request to remove r-cran-shinyjs which is not installed dpkg: warning: ignoring request to remove r-cran-sitmo which is not installed dpkg: warning: ignoring request to remove r-cran-sourcetools which is not installed dpkg: warning: ignoring request to remove r-cran-sp which is not installed dpkg: warning: ignoring request to remove r-cran-spam which is not installed dpkg: warning: ignoring request to remove r-cran-spatstat.data which is not installed dpkg: warning: ignoring request to remove r-cran-spatstat.explore which is not installed dpkg: warning: ignoring request to remove r-cran-spatstat.geom which is not installed dpkg: warning: ignoring request to remove r-cran-spatstat.random which is not installed dpkg: warning: ignoring request to remove r-cran-spatstat.sparse which is not installed dpkg: warning: ignoring request to remove r-cran-spatstat.univar which is not installed dpkg: warning: ignoring request to remove r-cran-spatstat.utils which is not installed dpkg: warning: ignoring request to remove r-cran-stringi which is not installed dpkg: warning: ignoring request to remove r-cran-stringr which is not installed dpkg: warning: ignoring request to remove r-cran-survival which is not installed dpkg: warning: ignoring request to remove r-cran-sys which is not installed dpkg: warning: ignoring request to remove r-cran-tensor which is not installed dpkg: warning: ignoring request to remove r-cran-tibble which is not installed dpkg: warning: ignoring request to remove r-cran-tidyr which is not installed dpkg: warning: ignoring request to remove r-cran-tidyselect which is not installed dpkg: warning: ignoring request to remove r-cran-tinytex which is not installed dpkg: warning: ignoring request to remove r-cran-utf8 which is not installed dpkg: warning: ignoring request to remove r-cran-uwot which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-cran-viridislite which is not installed dpkg: warning: ignoring request to remove r-cran-withr which is not installed dpkg: warning: ignoring request to remove r-cran-xfun which is not installed dpkg: warning: ignoring request to remove r-cran-xtable which is not installed dpkg: warning: ignoring request to remove r-cran-yaml which is not installed dpkg: warning: ignoring request to remove r-cran-zoo which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove rpcsvc-proto which is not installed dpkg: warning: ignoring request to remove sensible-utils which is not installed Purging configuration files for ucf (3.0053) ... dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'git', 'git-man', 'javascript-common', 'libamd3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.40:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'perl', 'perl-modules-5.40', 'procps', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-cran-abind', 'r-cran-askpass', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-catools', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deldir', 'r-cran-digest', 'r-cran-dotcall64', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastdummies', 'r-cran-fastmap', 'r-cran-fitdistrplus', 'r-cran-fnn', 'r-cran-fontawesome', 'r-cran-fs', 'r-cran-future', 'r-cran-future.apply', 'r-cran-gdata', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggridges', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gplots', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-here', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ica', 'r-cran-igraph', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lmtest', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-miniui', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-patchwork', 'r-cran-pbapply', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-progressr', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppannoy', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpptoml', 'r-cran-reshape2', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rocr', 'r-cran-rprojroot', 'r-cran-rspectra', 'r-cran-rtsne', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-scattermore', 'r-cran-sctransform', 'r-cran-seuratobject', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-spam', 'r-cran-spatstat.data', 'r-cran-spatstat.explore', 'r-cran-spatstat.geom', 'r-cran-spatstat.random', 'r-cran-spatstat.sparse', 'r-cran-spatstat.univar', 'r-cran-spatstat.utils', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tensor', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-uwot', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--purge', 'r-cran-seurat'] 1m8.7s DUMP: dpkg: warning: ignoring request to remove r-cran-seurat which is not installed 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--purge', 'r-cran-seurat'] 1m8.7s INFO: Running scripts post_purge 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_purge_exceptions'] 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_purge_exceptions'] 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--purge', '--pending'] 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--purge', '--pending'] 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--remove', '--pending'] 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg', '--remove', '--pending'] 1m8.8s INFO: Running scripts post_test 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_test_exceptions'] 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'tmp/scripts/post_test_exceptions'] 1m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 1m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 1m9.6s DEBUG: No broken symlinks as far as we can find. 1m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-divert', '--list'] 1m9.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'dpkg-divert', '--list'] 1m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'clean'] 1m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpyrxojedw', 'apt-get', 'clean'] 1m9.7s DEBUG: Recording chroot state 1m10.6s INFO: PASS: Installation and purging test. 1m11.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/shm'] 1m11.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/shm'] 1m11.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/console'] 1m11.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/console'] 1m11.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/ptmx'] 1m11.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/ptmx'] 1m11.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/pts'] 1m11.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/dev/pts'] 1m11.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/proc'] 1m11.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpyrxojedw/proc'] 1m11.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 1m11.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpyrxojedw'] 1m11.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpyrxojedw 1m11.2s INFO: PASS: All tests. 1m11.2s INFO: piuparts run ends. ret=0 End: 2026-05-03 11:17:03 GMT