Start: 2026-07-23 16:19:56 GMT Package: libjellyfish-2.0-2 Source: jellyfish (2.3.1-6) Version: 2.3.1-6+b1 Installed-Size: 204 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: libjellyfish-2.0-2t64 Provides: libjellfish-2.0-2t64 (= 2.3.1-6+b1) Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Conflicts: libjellyfish-2.0-2t64 Description: count k-mers in DNA sequences (dynamic library of jellyfish) Multi-Arch: same Homepage: https://www.genome.umd.edu/jellyfish.html Description-md5: 065d1ff8b79f64e89b68567eaeed6aa1 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/j/jellyfish/libjellyfish-2.0-2_2.3.1-6+b1_amd64.deb Size: 66556 MD5sum: 64e49ae709bb2d06c45a0134b310c53e SHA256: d3e4818277b26525b6b6d58c672893092d6c4a8158b8170b65a87652da0286d3 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libjellyfish-2.0-2=2.3.1-6+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libjellyfish-2.0-2=2.3.1-6+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-51-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.177-1 (2026-07-16) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9ad0lm0_ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9ad0lm0_ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9ad0lm0_/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp9ad0lm0_/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'apt-get', 'update'] 0m3.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.6 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7687 kB] Fetched 18.5 MB in 2s (7446 kB/s) Reading package lists... 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'apt-get', 'update'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'apt-get', '-yf', 'dist-upgrade'] 0m4.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: perl-base 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1852 kB of archives. After this operation, 1725 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.42.2-3 [1852 kB] Fetched 1852 kB in 0s (36.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4912 files and directories currently installed.) Preparing to unpack .../perl-base_5.42.2-3_amd64.deb ... Unpacking perl-base (5.42.2-3) over (5.40.1-8) ... Setting up perl-base (5.42.2-3) ... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'apt-get', '-yf', 'dist-upgrade'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.5s DUMP: 3e80cf7f97ba31fd941904cdb0dc18ee - 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.5s INFO: Running scripts post_setup 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'tmp/scripts/post_setup_dummy_users'] 0m6.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'tmp/scripts/post_setup_dummy_users'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'tmp/scripts/post_setup_fake-essential'] 0m6.6s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69). Solving dependencies... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: dbconfig-common : Depends: ucf but it is not going to be installed E: Unable to satisfy dependencies. Reached two conflicting assignments: 1. libtext-charwidth-perl:amd64 is selected for install because: 1. dbconfig-common:amd64=2.0.26 is selected for install 2. dbconfig-common:amd64 Depends ucf 3. ucf:amd64 Depends libtext-wrapi18n-perl 4. libtext-wrapi18n-perl:amd64 Depends libtext-charwidth-perl 2. libtext-charwidth-perl:amd64 Depends perlapi-5.40.1 but none of the choices are installable: [no choices] 0m6.6s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_', 'tmp/scripts/post_setup_fake-essential'] *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69). Solving dependencies... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: dbconfig-common : Depends: ucf but it is not going to be installed E: Unable to satisfy dependencies. Reached two conflicting assignments: 1. libtext-charwidth-perl:amd64 is selected for install because: 1. dbconfig-common:amd64=2.0.26 is selected for install 2. dbconfig-common:amd64 Depends ucf 3. ucf:amd64 Depends libtext-wrapi18n-perl 4. libtext-wrapi18n-perl:amd64 Depends libtext-charwidth-perl 2. libtext-charwidth-perl:amd64 Depends perlapi-5.40.1 but none of the choices are installable: [no choices] 0m7.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/shm'] 0m7.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/shm'] 0m7.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/console'] 0m7.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/console'] 0m7.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/ptmx'] 0m7.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/ptmx'] 0m7.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/pts'] 0m7.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/dev/pts'] 0m7.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/proc'] 0m7.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_/proc'] 0m7.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_'] 0m7.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9ad0lm0_'] 0m7.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9ad0lm0_ 0m7.3s ERROR: piuparts run ends. ret=1 End: 2026-07-23 16:20:04 GMT