Start: 2024-08-08 08:28:09 GMT Package: autodock Source: autodocksuite Version: 4.2.6-9 Installed-Size: 411 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2) Suggests: autogrid Description: analysis of ligand binding to protein structure Homepage: http://autodock.scripps.edu/ Description-md5: cb07d52bd1e475f3264ac94629f75f4f Tag: field::biology, field::biology:structural, implemented-in::c, interface::commandline, role::program, scope::utility, use::analysing, works-with-format::TODO, works-with::3dmodel, works-with::TODO Section: science Priority: optional Filename: pool/main/a/autodocksuite/autodock_4.2.6-9_amd64.deb Size: 167384 MD5sum: e6c6bc9b186c9cc5886233a6843b9803 SHA256: 38a5f690dd1f2dd2c1cae61a048aef3698efe4ecad13e5dd3d331bad1d126991 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt autodock=4.2.6-9 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt autodock=4.2.6-9 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-31-amd64 #1 SMP Debian 5.10.221-1 (2024-07-14) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp061z66ar 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp061z66ar 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp061z66ar', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp061z66ar', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp061z66ar/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp061z66ar/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp061z66ar/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp061z66ar/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'update'] 0m5.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9906 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7257 kB] Fetched 17.4 MB in 4s (4941 kB/s) Reading package lists... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'update'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libgcrypt20 libgpg-error0 libmount1 libsepol2 libsmartcols1 libuuid1 login login.defs mount passwd sysvinit-utils util-linux 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4739 kB of archives. After this operation, 11.3 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.2-6 [105 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.2-6 [35.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.2-6 [167 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.2-6 [199 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.2-6 [139 kB] Get:6 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.2-6 [1216 kB] Get:7 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.2-6 [154 kB] Get:8 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.10-1 [32.7 kB] Get:9 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.2-6 [57.6 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.50-3 [81.5 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.11.0-6 [843 kB] Get:12 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.16.0-4 [185 kB] Get:13 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.16.0-4 [1232 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.7-1 [293 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4739 kB in 0s (12.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.2-6_amd64.deb ... Unpacking bsdutils (1:2.40.2-6) over (1:2.40.2-4) ... Setting up bsdutils (1:2.40.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.2-6_amd64.deb ... Unpacking libuuid1:amd64 (2.40.2-6) over (2.40.2-4) ... Setting up libuuid1:amd64 (2.40.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.2-6_amd64.deb ... Unpacking libblkid1:amd64 (2.40.2-6) over (2.40.2-4) ... Setting up libblkid1:amd64 (2.40.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.2-6_amd64.deb ... Unpacking libmount1:amd64 (2.40.2-6) over (2.40.2-4) ... Setting up libmount1:amd64 (2.40.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.2-6_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.2-6) over (2.40.2-4) ... Setting up libsmartcols1:amd64 (2.40.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.2-6_amd64.deb ... Unpacking util-linux (2.40.2-6) over (2.40.2-4) ... Setting up util-linux (2.40.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../mount_2.40.2-6_amd64.deb ... Unpacking mount (2.40.2-6) over (2.40.2-4) ... Preparing to unpack .../sysvinit-utils_3.10-1_amd64.deb ... Unpacking sysvinit-utils (3.10-1) over (3.09-2) ... Setting up sysvinit-utils (3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5137 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.40.2-6_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.2-6) over (1:4.16.0-2+really2.40.2-4) ... Preparing to unpack .../libgpg-error0_1.50-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.50-3) over (1.50-2) ... Setting up libgpg-error0:amd64 (1.50-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5136 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.11.0-6_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.0-6) over (1.11.0-5) ... Setting up libgcrypt20:amd64 (1.11.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5136 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.16.0-4_all.deb ... Unpacking login.defs (1:4.16.0-4) over (1:4.16.0-3) ... Preparing to unpack .../passwd_1%3a4.16.0-4_amd64.deb ... Unpacking passwd (1:4.16.0-4) over (1:4.16.0-3) ... Preparing to unpack .../libsepol2_3.7-1_amd64.deb ... Unpacking libsepol2:amd64 (3.7-1) over (3.5-2+b1) ... Setting up login.defs (1:4.16.0-4) ... Setting up libsepol2:amd64 (3.7-1) ... Setting up passwd (1:4.16.0-4) ... Setting up mount (2.40.2-6) ... Setting up login (1:4.16.0-2+really2.40.2-6) ... Processing triggers for libc-bin (2.39-6) ... 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-yf', 'dist-upgrade'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.6s DUMP: 1f9a458a8144eca99b5ca740a74a4ac9 - 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.6s INFO: Running scripts post_setup 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_dummy_users'] 0m9.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_dummy_users'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_fake-essential'] 0m11.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.66). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 672 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 672 kB in 0s (9628 kB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.24) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_fake-essential'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_forbid_home'] 0m11.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_forbid_home'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_minimize'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_minimize'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_zz_backports'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_setup_zz_backports'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'clean'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'clean'] 0m11.1s DEBUG: Recording chroot state 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.8s DUMP: install ok installed apt apt 2.9.7 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.21-2.1 install ok installed bsdutils bsdutils 1:2.40.2-6 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-2 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-1 install ok installed gpgv gpgv 2.2.43-8 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.7 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-6 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.39-6 install ok installed libc6:amd64 libc6 2.39-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-6 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b3 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b4 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-6 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.1-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 256.4-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.4-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-6 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240622-2 install ok installed mount mount 2.40.2-6 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-divert', '--list'] 0m11.8s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-divert', '--list'] 0m11.8s INFO: Running scripts is_testable 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/is_testable_uninstallable'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/is_testable_uninstallable'] 0m11.8s INFO: apt-cache does not know about any of the requested packages 0m11.8s INFO: Running scripts pre_test 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_test_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_test_exceptions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_test_root_password'] 0m11.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_test_root_password'] 0m11.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m12.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m12.9s DEBUG: No broken symlinks as far as we can find. 0m12.9s INFO: Running scripts pre_install 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_database-server'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_database-server'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_exceptions'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_exceptions'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_extras'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_extras'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'show', '--no-all-versions', 'autodock=4.2.6-9'] 0m14.3s DUMP: Package: autodock Source: autodocksuite Version: 4.2.6-9 Installed-Size: 411 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2) Suggests: autogrid Description-en: analysis of ligand binding to protein structure AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account. . The AutoDock program performs the docking of the ligand to a set of grids describing the target protein. AutoGrid pre-calculates these grids. Description-md5: cb07d52bd1e475f3264ac94629f75f4f Homepage: http://autodock.scripps.edu/ Tag: field::biology, field::biology:structural, implemented-in::c, interface::commandline, role::program, scope::utility, use::analysing, works-with-format::TODO, works-with::3dmodel, works-with::TODO Section: science Priority: optional Filename: pool/main/a/autodocksuite/autodock_4.2.6-9_amd64.deb Size: 167384 MD5sum: e6c6bc9b186c9cc5886233a6843b9803 SHA256: 38a5f690dd1f2dd2c1cae61a048aef3698efe4ecad13e5dd3d331bad1d126991 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'show', '--no-all-versions', 'autodock=4.2.6-9'] 0m14.3s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m14.3s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpcvip6ghu/piuparts-depends-dummy'] 0m14.3s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpcvip6ghu/piuparts-depends-dummy.deb'. 0m14.3s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpcvip6ghu/piuparts-depends-dummy'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m14.3s DUMP: 2.9.7 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m14.3s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpcvip6ghu/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp061z66ar/tmp 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: piuparts-depends-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/670 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [670 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package piuparts-depends-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5483 files and directories currently installed.) Preparing to unpack .../tmp/piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m15.3s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m15.3s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp061z66ar/./tmp/piuparts-depends-dummy.deb 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m15.3s DUMP: piuparts-depends-dummy install ok installed 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m15.3s DUMP: (Reading database ... 5483 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'clean'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'clean'] 0m15.3s DEBUG: Recording chroot state 0m16.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m17.1s DEBUG: No broken symlinks as far as we can find. 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy'] 0m18.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy', 'autodock'] 0m18.3s DUMP: autodock: Installed: (none) Candidate: 4.2.6-9 Version table: 4.2.6-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy', 'autodock'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', 'install', 'autodock=4.2.6-9'] 0m19.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: autogrid The following NEW packages will be installed: autodock 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 167 kB of archives. After this operation, 421 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 autodock amd64 4.2.6-9 [167 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 167 kB in 0s (4965 kB/s) Selecting previously unselected package autodock. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5483 files and directories currently installed.) Preparing to unpack .../autodock_4.2.6-9_amd64.deb ... Unpacking autodock (4.2.6-9) ... Setting up autodock (4.2.6-9) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', 'install', 'autodock=4.2.6-9'] 0m19.5s INFO: Running scripts post_install 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_install_exceptions'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_install_exceptions'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'remove', 'autodock'] 0m20.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autodock 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 421 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5494 files and directories currently installed.) Removing autodock (4.2.6-9) ... 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'remove', 'autodock'] 0m20.5s INFO: Reinstalling after remove 0m20.5s INFO: Running scripts pre_install 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_database-server'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_database-server'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_exceptions'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_exceptions'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_extras'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_extras'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy'] 0m20.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy', 'autodock'] 0m20.7s DUMP: autodock: Installed: (none) Candidate: 4.2.6-9 Version table: 4.2.6-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy', 'autodock'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', 'install', 'autodock=4.2.6-9'] 0m21.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: autogrid The following NEW packages will be installed: autodock debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/167 kB of archives. After this operation, 421 kB of additional disk space will be used. Selecting previously unselected package autodock. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5483 files and directories currently installed.) Preparing to unpack .../autodock_4.2.6-9_amd64.deb ... Unpacking autodock (4.2.6-9) ... Setting up autodock (4.2.6-9) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', 'install', 'autodock=4.2.6-9'] 0m21.7s INFO: Running scripts post_install 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_install_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_install_exceptions'] 0m21.7s INFO: Running scripts pre_install 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_database-server'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_database-server'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_exceptions'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_extras'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_extras'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy'] 0m21.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy', 'autodock'] 0m21.8s DUMP: autodock: Installed: 4.2.6-9 Candidate: 4.2.6-9 Version table: *** 4.2.6-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-cache', 'policy', 'autodock'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', 'install', '--reinstall', 'autodock=4.2.6-9'] 0m22.9s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/167 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5494 files and directories currently installed.) Preparing to unpack .../autodock_4.2.6-9_amd64.deb ... Unpacking autodock (4.2.6-9) over (4.2.6-9) ... Setting up autodock (4.2.6-9) ... ---------------------------------------------------------------------- ______ / \ / \ / \ \ /\ / \ / \ / \/ /\ \/ / \ /____\ AutoDock and AutoGrid are free software, distributed under the terms of the GNU General Public License 2 or later. This allows us to share the code and to be open for improvement from the whole scientific community. The development of the AutoDock suite is entirely funded by research grants. For that reason, we ask you to register at the AutoDock Registration page http://autodock.scripps.edu/downloads/autodock-registration in order to keep track of number of unique downloads, which we use to support the grant applications. Installing the Debian popularity-contest package is also encouraged. Thank you, and happy docking! The AutoDock Development Team If you plan to use AutoDock for commercial purposes we encourage donations to the Olson laboratory to help support further development of the AutoDock 4 suite of programs. Donation information provided on the download page. ---------------------------------------------------------------------- 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', '-y', 'install', '--reinstall', 'autodock=4.2.6-9'] 0m22.9s INFO: Running scripts post_install 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_install_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_install_exceptions'] 0m22.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m23.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m24.0s DEBUG: No broken symlinks as far as we can find. 0m24.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp061z66ar', '-ac', '--ignore-obsolete'] 0m25.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp061z66ar', '-ac', '--ignore-obsolete'] 0m25.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.4s DUMP: 0.15.6 0m25.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.4s INFO: Running adequate version 0.15.6 now. 0m25.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'autodock'] 0m25.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'autodock'] 0m25.5s INFO: Running scripts pre_remove 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_exceptions'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_exceptions'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.4s DUMP: install ok installed apt apt 2.9.7 install ok installed autodock autodock 4.2.6-9 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.21-2.1 install ok installed bsdutils bsdutils 1:2.40.2-6 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-2 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-1 install ok installed gpgv gpgv 2.2.43-8 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.7 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libblkid1:amd64 libblkid1 2.40.2-6 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.39-6 install ok installed libc6:amd64 libc6 2.39-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-6 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b3 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b4 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-6 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.1-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 256.4-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.4-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-6 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240622-2 install ok installed mount mount 2.40.2-6 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'remove', 'autodock'] 0m27.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autodock 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 421 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5494 files and directories currently installed.) Removing autodock (4.2.6-9) ... 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'remove', 'autodock'] 0m27.4s INFO: Running scripts post_remove 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_remove_cleanup'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_remove_cleanup'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_remove_exceptions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_remove_exceptions'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--purge', 'autodock'] 0m27.4s DUMP: dpkg: warning: ignoring request to remove autodock which isn't installed 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--purge', 'autodock'] 0m27.4s INFO: Running scripts post_purge 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_purge_exceptions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_purge_exceptions'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_purge_manual_cleanup'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_purge_manual_cleanup'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--purge', '--pending'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--purge', '--pending'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--remove', '--pending'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg', '--remove', '--pending'] 0m27.4s INFO: Running scripts post_test 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_test_exceptions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'tmp/scripts/post_test_exceptions'] 0m27.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m27.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m28.6s DEBUG: No broken symlinks as far as we can find. 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-divert', '--list'] 0m28.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'dpkg-divert', '--list'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'clean'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp061z66ar', 'apt-get', 'clean'] 0m28.6s DEBUG: Recording chroot state 0m29.4s INFO: PASS: Installation and purging test. 0m29.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/shm'] 0m29.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/shm'] 0m29.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/console'] 0m29.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/console'] 0m29.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/ptmx'] 0m29.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/ptmx'] 0m29.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/pts'] 0m29.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/dev/pts'] 0m29.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/proc'] 0m30.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp061z66ar/proc'] 0m30.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m30.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp061z66ar'] 0m30.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp061z66ar 0m30.1s INFO: PASS: All tests. 0m30.1s INFO: piuparts run ends. ret=0 End: 2024-08-08 08:28:39 GMT