Start: 2024-09-05 16:32:47 GMT Package: bolt-lmm Version: 2.4.1+dfsg-2 Installed-Size: 968 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libnlopt0 (>= 2.6.1), libopenblas0, libstdc++6 (>= 13.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Suggests: bolt-lmm-doc Description: Efficient large cohorts genome-wide Bayesian mixed-model association testing Homepage: https://data.broadinstitute.org/alkesgroup/BOLT-LMM/ Description-md5: 4f9ee43ad946ed850a9146b123a35ba8 Section: science Priority: optional Filename: pool/main/b/bolt-lmm/bolt-lmm_2.4.1+dfsg-2_amd64.deb Size: 351272 MD5sum: b95807c93abac268f0dc2745181a732c SHA256: 3ffe09bb2cede106e835162aec72033bf27cf0660e158f86f5058709d848e6a3 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt bolt-lmm=2.4.1+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201642~1.4.3-11-g36a88c35 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt bolt-lmm=2.4.1+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpq8p3s3z9 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpq8p3s3z9 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpq8p3s3z9/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpq8p3s3z9/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'update'] 0m3.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9945 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7293 kB] Fetched 17.4 MB in 2s (8400 kB/s) Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.1s DUMP: 7adf4eec3457d6faecd68045f9fc9fa4 - 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.1s INFO: Running scripts post_setup 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_fake-essential'] 0m6.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... init-system-helpers is already the newest version (1.66). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 672 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 672 kB in 0s (16.2 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5129 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.24) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_fake-essential'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_forbid_home'] 0m6.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_forbid_home'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_minimize'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_minimize'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_zz_backports'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_setup_zz_backports'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'clean'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'clean'] 0m6.3s DEBUG: Recording chroot state 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1 install ok installed bsdutils bsdutils 1:2.40.2-7 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-4 install ok installed gpgv gpgv 2.2.43-8 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-7 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-2 install ok installed libc6:amd64 libc6 2.40-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-7 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-7 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 256.5-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.5-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-7 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240819-3 install ok installed mount mount 2.40.2-7 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-7 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-divert', '--list'] 0m6.7s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-divert', '--list'] 0m6.7s INFO: Running scripts is_testable 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/is_testable_uninstallable'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/is_testable_uninstallable'] 0m6.7s INFO: apt-cache does not know about any of the requested packages 0m6.7s INFO: Running scripts pre_test 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_test_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_test_root_password'] 0m6.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_test_root_password'] 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m7.4s DEBUG: No broken symlinks as far as we can find. 0m7.4s INFO: Running scripts pre_install 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'show', '--no-all-versions', 'bolt-lmm=2.4.1+dfsg-2'] 0m8.2s DUMP: Package: bolt-lmm Version: 2.4.1+dfsg-2 Installed-Size: 968 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libnlopt0 (>= 2.6.1), libopenblas0, libstdc++6 (>= 13.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Suggests: bolt-lmm-doc Description-en: Efficient large cohorts genome-wide Bayesian mixed-model association testing The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML algorithm for variance components analysis (i.e., partitioning of SNP-heritability and estimation of genetic correlations). . The BOLT-LMM algorithm computes statistics for testing association between phenotype and genotypes using a linear mixed model. By default, BOLT-LMM assumes a Bayesian mixture-of-normals prior for the random effect attributed to SNPs other than the one being tested. This model generalizes the standard infinitesimal mixed model used by previous mixed model association methods, providing an opportunity for increased power to detect associations while controlling false positives. Additionally, BOLT-LMM applies algorithmic advances to compute mixed model association statistics much faster than eigendecomposition-based methods, both when using the Bayesian mixture model and when specialized to standard mixed model association. . The BOLT-REML algorithm estimates heritability explained by genotyped SNPs and genetic correlations among multiple traits measured on the same set of individuals. BOLT-REML applies variance components analysis to perform these tasks, supporting both multi-component modeling to partition SNP-heritability and multi-trait modeling to estimate correlations. BOLT-REML applies a Monte Carlo algorithm that is much faster than eigendecomposition-based methods for variance components analysis at large sample sizes. Description-md5: 4f9ee43ad946ed850a9146b123a35ba8 Homepage: https://data.broadinstitute.org/alkesgroup/BOLT-LMM/ Section: science Priority: optional Filename: pool/main/b/bolt-lmm/bolt-lmm_2.4.1+dfsg-2_amd64.deb Size: 351272 MD5sum: b95807c93abac268f0dc2745181a732c SHA256: 3ffe09bb2cede106e835162aec72033bf27cf0660e158f86f5058709d848e6a3 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'show', '--no-all-versions', 'bolt-lmm=2.4.1+dfsg-2'] 0m8.2s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libboost-iostreams1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libnlopt0 (>= 2.6.1), libopenblas0, libstdc++6 (>= 13.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.1.4) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m8.2s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprjcyyvtq/piuparts-depends-dummy'] 0m8.2s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmprjcyyvtq/piuparts-depends-dummy.deb'. 0m8.2s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprjcyyvtq/piuparts-depends-dummy'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m8.2s DUMP: 2.9.8 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m8.2s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmprjcyyvtq/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpq8p3s3z9/tmp 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m9.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libboost-iostreams1.83.0 libboost-program-options1.83.0 libgfortran5 libgomp1 libnlopt0 libopenblas0 libopenblas0-pthread The following NEW packages will be installed: libboost-iostreams1.83.0 libboost-program-options1.83.0 libgfortran5 libgomp1 libnlopt0 libopenblas0 libopenblas0-pthread piuparts-depends-dummy 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 8685 kB/8686 kB of archives. After this operation, 56.4 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [746 B] Get:2 http://deb.debian.org/debian sid/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3.2 [253 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2 [347 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-4 [837 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-4 [137 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libnlopt0 amd64 2.7.1-5+b4 [174 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.28+ds-2 [6897 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.28+ds-2 [40.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8685 kB in 0s (81.0 MB/s) Selecting previously unselected package libboost-iostreams1.83.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5481 files and directories currently installed.) Preparing to unpack .../0-libboost-iostreams1.83.0_1.83.0-3.2_amd64.deb ... Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-3.2) ... Selecting previously unselected package libboost-program-options1.83.0:amd64. Preparing to unpack .../1-libboost-program-options1.83.0_1.83.0-3.2_amd64.deb ... Unpacking libboost-program-options1.83.0:amd64 (1.83.0-3.2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../2-libgfortran5_14.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-4) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../3-libgomp1_14.2.0-4_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-4) ... Selecting previously unselected package libnlopt0:amd64. Preparing to unpack .../4-libnlopt0_2.7.1-5+b4_amd64.deb ... Unpacking libnlopt0:amd64 (2.7.1-5+b4) ... Selecting previously unselected package libopenblas0-pthread:amd64. Preparing to unpack .../5-libopenblas0-pthread_0.3.28+ds-2_amd64.deb ... Unpacking libopenblas0-pthread:amd64 (0.3.28+ds-2) ... Selecting previously unselected package libopenblas0:amd64. Preparing to unpack .../6-libopenblas0_0.3.28+ds-2_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.28+ds-2) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../7-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libboost-program-options1.83.0:amd64 (1.83.0-3.2) ... Setting up libnlopt0:amd64 (2.7.1-5+b4) ... Setting up libgomp1:amd64 (14.2.0-4) ... Setting up libboost-iostreams1.83.0:amd64 (1.83.0-3.2) ... Setting up libgfortran5:amd64 (14.2.0-4) ... Setting up libopenblas0-pthread:amd64 (0.3.28+ds-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libopenblas0:amd64 (0.3.28+ds-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m9.7s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m9.7s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpq8p3s3z9/./tmp/piuparts-depends-dummy.deb 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m9.8s DUMP: piuparts-depends-dummy install ok installed 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m9.8s DUMP: (Reading database ... 5525 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'clean'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'clean'] 0m9.8s DEBUG: Recording chroot state 0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m10.9s DEBUG: No broken symlinks as far as we can find. 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy'] 0m11.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy', 'bolt-lmm'] 0m11.6s DUMP: bolt-lmm: Installed: (none) Candidate: 2.4.1+dfsg-2 Version table: 2.4.1+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy', 'bolt-lmm'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', 'install', 'bolt-lmm=2.4.1+dfsg-2'] 0m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: bolt-lmm-doc The following NEW packages will be installed: bolt-lmm 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 351 kB of archives. After this operation, 991 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bolt-lmm amd64 2.4.1+dfsg-2 [351 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 351 kB in 0s (8074 kB/s) Selecting previously unselected package bolt-lmm. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5525 files and directories currently installed.) Preparing to unpack .../bolt-lmm_2.4.1+dfsg-2_amd64.deb ... Unpacking bolt-lmm (2.4.1+dfsg-2) ... Setting up bolt-lmm (2.4.1+dfsg-2) ... 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', 'install', 'bolt-lmm=2.4.1+dfsg-2'] 0m12.4s INFO: Running scripts post_install 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_install_exceptions'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_install_exceptions'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'remove', 'bolt-lmm'] 0m13.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libboost-iostreams1.83.0 libboost-program-options1.83.0 libgfortran5 libgomp1 libnlopt0 libopenblas0 libopenblas0-pthread Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: bolt-lmm 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 991 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5531 files and directories currently installed.) Removing bolt-lmm (2.4.1+dfsg-2) ... 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'remove', 'bolt-lmm'] 0m13.1s INFO: Reinstalling after remove 0m13.1s INFO: Running scripts pre_install 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_database-server'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_database-server'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_exceptions'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_extras'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_extras'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy'] 0m13.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy', 'bolt-lmm'] 0m13.3s DUMP: bolt-lmm: Installed: (none) Candidate: 2.4.1+dfsg-2 Version table: 2.4.1+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy', 'bolt-lmm'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', 'install', 'bolt-lmm=2.4.1+dfsg-2'] 0m14.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: bolt-lmm-doc The following NEW packages will be installed: bolt-lmm debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/351 kB of archives. After this operation, 991 kB of additional disk space will be used. Selecting previously unselected package bolt-lmm. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5525 files and directories currently installed.) Preparing to unpack .../bolt-lmm_2.4.1+dfsg-2_amd64.deb ... Unpacking bolt-lmm (2.4.1+dfsg-2) ... Setting up bolt-lmm (2.4.1+dfsg-2) ... 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', 'install', 'bolt-lmm=2.4.1+dfsg-2'] 0m14.1s INFO: Running scripts post_install 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_install_exceptions'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_install_exceptions'] 0m14.1s INFO: Running scripts pre_install 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_database-server'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_database-server'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_exceptions'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_exceptions'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_extras'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_extras'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy'] 0m14.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy', 'bolt-lmm'] 0m14.2s DUMP: bolt-lmm: Installed: 2.4.1+dfsg-2 Candidate: 2.4.1+dfsg-2 Version table: *** 2.4.1+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-cache', 'policy', 'bolt-lmm'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', 'install', '--reinstall', 'bolt-lmm=2.4.1+dfsg-2'] 0m15.0s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/351 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5531 files and directories currently installed.) Preparing to unpack .../bolt-lmm_2.4.1+dfsg-2_amd64.deb ... Unpacking bolt-lmm (2.4.1+dfsg-2) over (2.4.1+dfsg-2) ... Setting up bolt-lmm (2.4.1+dfsg-2) ... 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', '-y', 'install', '--reinstall', 'bolt-lmm=2.4.1+dfsg-2'] 0m15.0s INFO: Running scripts post_install 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_install_exceptions'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_install_exceptions'] 0m15.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m15.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m15.6s DEBUG: No broken symlinks as far as we can find. 0m15.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', '-ac', '--ignore-obsolete'] 0m16.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', '-ac', '--ignore-obsolete'] 0m16.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.8s DUMP: 0.15.6 0m16.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.8s INFO: Running adequate version 0.15.6 now. 0m16.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'bolt-lmm'] 0m16.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'bolt-lmm'] 0m16.9s INFO: Running scripts pre_remove 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_exceptions'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_exceptions'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m17.7s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1 install ok installed bolt-lmm bolt-lmm 2.4.1+dfsg-2 install ok installed bsdutils bsdutils 1:2.40.2-7 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-4 install ok installed gpgv gpgv 2.2.43-8 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-7 install ok installed libboost-iostreams1.83.0:amd64 libboost-iostreams1.83.0 1.83.0-3.2 install ok installed libboost-program-options1.83.0:amd64 libboost-program-options1.83.0 1.83.0-3.2 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-2 install ok installed libc6:amd64 libc6 2.40-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-4 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-7 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libnlopt0:amd64 libnlopt0 2.7.1-5+b4 install ok installed libopenblas0:amd64 libopenblas0 0.3.28+ds-2 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.28+ds-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-7 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 256.5-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.5-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-7 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240819-3 install ok installed mount mount 2.40.2-7 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-7 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'remove', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libnlopt0:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'bolt-lmm'] 0m18.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bolt-lmm libboost-iostreams1.83.0 libboost-program-options1.83.0 libgfortran5 libgomp1 libnlopt0 libopenblas0 libopenblas0-pthread 0 upgraded, 0 newly installed, 8 to remove and 0 not upgraded. After this operation, 57.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5531 files and directories currently installed.) Removing bolt-lmm (2.4.1+dfsg-2) ... Removing libboost-iostreams1.83.0:amd64 (1.83.0-3.2) ... Removing libboost-program-options1.83.0:amd64 (1.83.0-3.2) ... Removing libopenblas0:amd64 (0.3.28+ds-2) ... Removing libopenblas0-pthread:amd64 (0.3.28+ds-2) ... Removing libgfortran5:amd64 (14.2.0-4) ... Removing libgomp1:amd64 (14.2.0-4) ... Removing libnlopt0:amd64 (2.7.1-5+b4) ... Processing triggers for libc-bin (2.40-2) ... 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'remove', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libnlopt0:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'bolt-lmm'] 0m18.3s INFO: Running scripts post_remove 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_remove_cleanup'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_remove_cleanup'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_remove_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_remove_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libnlopt0:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64'] 0m18.4s DUMP: dpkg: warning: ignoring request to remove libboost-iostreams1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.83.0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.83.0:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libnlopt0:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', 'bolt-lmm'] 0m18.4s DUMP: dpkg: warning: ignoring request to remove bolt-lmm which isn't installed 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', 'bolt-lmm'] 0m18.4s INFO: Running scripts post_purge 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_purge_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_purge_exceptions'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_purge_manual_cleanup'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_purge_manual_cleanup'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', '--pending'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--purge', '--pending'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--remove', '--pending'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg', '--remove', '--pending'] 0m18.4s INFO: Running scripts post_test 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_test_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'tmp/scripts/post_test_exceptions'] 0m18.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m18.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m19.4s DEBUG: No broken symlinks as far as we can find. 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-divert', '--list'] 0m19.4s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'dpkg-divert', '--list'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'clean'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9', 'apt-get', 'clean'] 0m19.5s DEBUG: Recording chroot state 0m20.0s INFO: PASS: Installation and purging test. 0m20.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/shm'] 0m20.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/shm'] 0m20.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/console'] 0m20.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/console'] 0m20.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/ptmx'] 0m20.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/ptmx'] 0m20.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/pts'] 0m20.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/dev/pts'] 0m20.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/proc'] 0m20.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9/proc'] 0m20.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m20.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpq8p3s3z9'] 0m20.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpq8p3s3z9 0m20.6s INFO: PASS: All tests. 0m20.6s INFO: piuparts run ends. ret=0 End: 2024-09-05 16:33:08 GMT