Start: 2026-11-05 15:13:30 GMT Package: canu Version: 2.3+dfsg-2 Installed-Size: 43485 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libcurl4t64 (>= 7.18.0), libgcc-s1 (>= 4.2), libgomp1 (>= 6), liblzma5 (>= 5.1.1alpha+20120614), libsnappy1v5 (>= 1.3.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), perl:any, libfilesys-df-perl, mhap, gnu-which, samtools, gnuplot-nox | gnuplot Suggests: nanopolish Description: single molecule sequence assembler for genomes Homepage: https://canu.readthedocs.org/en/latest/ Description-md5: dfb92004d9d7cddcbf07a6673e65c897 Section: science Priority: optional Filename: pool/main/c/canu/canu_2.3+dfsg-2_amd64.deb Size: 4258680 MD5sum: bf4a0460c325a69da4d845be6f44dc3b SHA256: f7d38f99d5db2d9fbddba1334f6f545042fccbb4c28da493d0e466952986fa02 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt canu=2.3+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt canu=2.3+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.115+deb13.1-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.115-2 (2026-11-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppt3o4115 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppt3o4115 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppt3o4115', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppt3o4115', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppt3o4115/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppt3o4115/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppt3o4115/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmppt3o4115/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'update'] 0m3.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7778 kB] Fetched 18.8 MB in 2s (9058 kB/s) Reading package lists... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'update'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: b48a1afeca40d85d7518c3a18e9f5a90 - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_fake-essential'] 0m7.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... init-system-helpers is already the newest version (1.69+nmu3). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mariadb | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1919 kB of archives. After this operation, 5467 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.7-1.1 [73.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.7-1.1 [990 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.1.0 [627 kB] Preconfiguring packages ... Fetched 1919 kB in 0s (32.9 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4956 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.7-1.1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1.1) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.7-1.1_amd64.deb ... Unpacking procps (2:4.0.7-1.1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.1.0_all.deb ... Unpacking dbconfig-common (2.1.0) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.7-1.1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.7-1.1) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.1.0) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.43-7) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_fake-essential'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_zz_backports'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_setup_zz_backports'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'clean'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'clean'] 0m7.2s DEBUG: Recording chroot state 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DUMP: install ok installed apt apt 3.3.6 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.12-0.3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-4 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.6 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-12 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 262.1-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed procps procps 2:4.0.7-1.1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-divert', '--list'] 0m7.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-divert', '--list'] 0m7.7s INFO: Running scripts is_testable 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/is_testable_uninstallable'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/is_testable_uninstallable'] 0m7.7s INFO: apt-cache does not know about any of the requested packages 0m7.7s INFO: Running scripts pre_test 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_test_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_test_exceptions'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_test_root_password'] 0m7.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_test_root_password'] 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m8.5s DEBUG: No broken symlinks as far as we can find. 0m8.5s INFO: Running scripts pre_install 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_database-server'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_database-server'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_extras'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_extras'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'show', '--no-all-versions', 'canu=2.3+dfsg-2'] 0m9.6s DUMP: Package: canu Version: 2.3+dfsg-2 Installed-Size: 43485 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libcurl4t64 (>= 7.18.0), libgcc-s1 (>= 4.2), libgomp1 (>= 6), liblzma5 (>= 5.1.1alpha+20120614), libsnappy1v5 (>= 1.3.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), perl:any, libfilesys-df-perl, mhap, gnu-which, samtools, gnuplot-nox | gnuplot Suggests: nanopolish Description-en: single molecule sequence assembler for genomes Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). . Canu is a hierarchical assembly pipeline which runs in four steps: . * Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences Canu has reached end of life. It hasn't seen active development since around 2021 and has not been tuned or tested on more recent data. Unless you're assembling reads from that era, use a more recent assembler. Description-md5: dfb92004d9d7cddcbf07a6673e65c897 Homepage: https://canu.readthedocs.org/en/latest/ Section: science Priority: optional Filename: pool/main/c/canu/canu_2.3+dfsg-2_amd64.deb Size: 4258680 MD5sum: bf4a0460c325a69da4d845be6f44dc3b SHA256: f7d38f99d5db2d9fbddba1334f6f545042fccbb4c28da493d0e466952986fa02 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'show', '--no-all-versions', 'canu=2.3+dfsg-2'] 0m9.6s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libbz2-1.0, libc6 (>= 2.38), libcurl4t64 (>= 7.18.0), libgcc-s1 (>= 4.2), libgomp1 (>= 6), liblzma5 (>= 5.1.1alpha+20120614), libsnappy1v5 (>= 1.3.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), perl:any, libfilesys-df-perl, mhap, gnu-which, samtools, gnuplot-nox | gnuplot Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m9.6s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp0r9dbx02/piuparts-depends-dummy'] 0m9.6s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp0r9dbx02/piuparts-depends-dummy.deb'. 0m9.6s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp0r9dbx02/piuparts-depends-dummy'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.6s DUMP: 3.3.6 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.6s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp0r9dbx02/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmppt3o4115/tmp 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m26.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: aglfn binfmt-support ca-certificates ca-certificates-java default-jre-headless fastjar fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gnu-which gnuplot-data gnuplot-nox jaligner jarwrapper java-common libabsl20260526 libaom3 libapache-pom-java libatinject-jsr330-api-java libatomic1 libavif16 libbrotli1 libcairo2 libcom-err2 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-parent-java libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libedit2 liberror-prone-java libexpat1 libfastutil-java libffi8 libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgd3 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libguava-java libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3t64 libhtscodecs2 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjspecify-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblua5.4-0 libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnspr4 libnss3 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libperl5.42 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librav1e0.8 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsnappy1v5 libsqlite3-0 libssh2-1t64 libssw-java libsvtav1enc4 libtasn1-6 libthai-data libthai0 libtiff6 libunistring5 libwebp7 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxpm4 libxrender1 libyuv0 media-types mhap netbase openjdk-25-jre-headless openssl perl perl-modules-5.42 python3 python3-minimal python3.14 python3.14-minimal readline-common samtools Suggested packages: default-jre gnuplot-doc libatinject-jsr330-api-java-doc libasm-java libxz-java libgd-tools gdbm-l10n low-memory-monitor gnutls-bin krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libjsr305-java-doc liblcms2-utils pcscd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.14-venv python3.14-doc binutils readline-doc cwltool Recommended packages: fonts-liberation groff libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libcups2t64 libasound2t64 The following NEW packages will be installed: aglfn binfmt-support ca-certificates ca-certificates-java default-jre-headless fastjar fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gnu-which gnuplot-data gnuplot-nox jaligner jarwrapper java-common libabsl20260526 libaom3 libapache-pom-java libatinject-jsr330-api-java libatomic1 libavif16 libbrotli1 libcairo2 libcom-err2 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-parent-java libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libedit2 liberror-prone-java libexpat1 libfastutil-java libffi8 libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgd3 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libguava-java libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3t64 libhtscodecs2 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjspecify-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblua5.4-0 libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnspr4 libnss3 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libperl5.42 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librav1e0.8 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsnappy1v5 libsqlite3-0 libssh2-1t64 libssw-java libsvtav1enc4 libtasn1-6 libthai-data libthai0 libtiff6 libunistring5 libwebp7 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxpm4 libxrender1 libyuv0 media-types mhap netbase openjdk-25-jre-headless openssl perl perl-modules-5.42 piuparts-depends-dummy python3 python3-minimal python3.14 python3.14-minimal readline-common samtools 0 upgraded, 137 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB/126 MB of archives. After this operation, 442 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [788 B] Get:2 http://deb.debian.org/debian sid/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 binfmt-support amd64 2.2.2-8 [72.5 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.10.0-1 [135 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.10-1 [905 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.10-1 [2734 kB] Get:7 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.8-1 [25.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 netbase all 6.6 [10.3 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:11 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.54.1-2 [1020 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.10-1 [2360 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.10-1 [884 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.8-1 [8520 B] Get:17 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.8-1 [26.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:19 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260816+nmu1 [134 kB] Get:20 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:24 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.3-1 [266 kB] Get:25 http://deb.debian.org/debian sid/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get:26 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20260311 [11.2 kB] Get:27 http://deb.debian.org/debian sid/main amd64 java-common all 0.77 [6620 B] Get:28 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.40-1 [116 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.132-1 [1545 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.5.3-1 [56.7 kB] Get:33 http://deb.debian.org/debian sid/main amd64 openjdk-25-jre-headless amd64 25.0.5.0.3+1-1 [54.0 MB] Get:34 http://deb.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.25-77 [3012 B] Get:35 http://deb.debian.org/debian sid/main amd64 fastjar amd64 2:0.98-8 [80.0 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-4.1 [325 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.59-1 [293 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-3 [510 kB] Get:39 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:40 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:41 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:43 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:44 http://deb.debian.org/debian sid/main amd64 gnu-which amd64 2.21+dfsg-5 [16.5 kB] Get:45 http://deb.debian.org/debian sid/main amd64 gnuplot-data all 6.0.3+dfsg1-1 [73.0 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.14-1 [349 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.14-1 [849 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.13-1 [29.0 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:62 http://deb.debian.org/debian sid/main amd64 librav1e0.8 amd64 0.8.1-12 [970 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libsvtav1enc4 amd64 4.2.0+dfsg-3 [2492 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1974.20261008-1 [195 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libde265-0 amd64 1.1.3-1+b1 [219 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libheif-plugin-libde265 amd64 1.23.6-2 [19.6 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libheif-plugin-dav1d amd64 1.23.6-2 [22.1 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libheif1 amd64 1.23.6-2 [885 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:74 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.3.0+ds-2 [209 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libxpm4 amd64 1:3.5.20-1 [60.2 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libgd3 amd64 2.3.3-14 [126 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16.2.0-4 [10.4 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:81 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.9-2 [152 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 14.4.0+ds-1 [572 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.58.2-1 [233 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.58.2-1 [56.0 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.58.2-1 [35.3 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:92 http://deb.debian.org/debian sid/main amd64 gnuplot-nox amd64 6.0.3+dfsg1-1 [928 kB] Get:93 http://deb.debian.org/debian sid/main amd64 jaligner all 1.0+dfsg-11 [133 kB] Get:94 http://deb.debian.org/debian sid/main amd64 jarwrapper all 0.82 [9024 B] Get:95 http://deb.debian.org/debian sid/main amd64 libapache-pom-java all 33-2 [5852 B] Get:96 http://deb.debian.org/debian sid/main amd64 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get:97 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.23.0-1 [362 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libcommons-io-java all 2.22.0-1 [570 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 1.28.0-1 [665 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:112 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-12 [18.4 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-12 [59.4 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.23.0-1 [463 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.23.0-1 [469 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libjspecify-java all 1.0.0-2 [4168 B] Get:125 http://deb.debian.org/debian sid/main amd64 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libguava-java all 33.7.1-1 [2745 kB] Get:127 http://deb.debian.org/debian sid/main amd64 liberror-prone-java all 2.50.0-1 [23.7 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libfastutil-java all 8.5.16+dfsg-1 [20.2 MB] Get:129 http://deb.debian.org/debian sid/main amd64 libfilesys-df-perl amd64 0.92-7+b5 [11.9 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-4 [151 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.7-1 [102 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.24-3 [506 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.6+20260608-2 [107 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.3.1-4 [32.2 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libssw-java amd64 1.2.5-4 [14.5 kB] Get:136 http://deb.debian.org/debian sid/main amd64 mhap all 2.1.3+dfsg-3 [160 kB] Get:137 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.24-2 [730 kB] Preconfiguring packages ... Fetched 126 MB in 1s (133 MB/s) Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5497 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../binfmt-support_2.2.2-8_amd64.deb ... Unpacking binfmt-support (2.2.2-8) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.54.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.54.1-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../7-libpython3.14-stdlib_3.14.10-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.10-1) ... 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Setting up libsharpyuv0:amd64 (1.6.0-0.1) ... Setting up libaom3:amd64 (3.14.1-1) ... Setting up libxau6:amd64 (1:1.0.11-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.5-2+b1) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up gnu-which (2.21+dfsg-5) ... update-alternatives: using /usr/bin/which.gnu to provide /usr/bin/which (which) in auto mode Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up libjspecify-java (1.0.0-2) ... Setting up liblerc4:amd64 (4.3.0+ds-2) ... Setting up libjsr305-java (0.1~+svn49-12) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up java-common (0.77) ... Setting up libdatrie1:amd64 (0.2.14-2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libxcb-render0:amd64 (1.17.0-2+b2) ... Setting up libbrotli1:amd64 (1.2.0-4.1) ... Setting up libedit2:amd64 (3.1-20260512-1) ... Setting up libsqlite3-0:amd64 (3.54.1-2) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up libcom-err2:amd64 (1.47.4-1+b2) ... Setting up libgomp1:amd64 (16.2.0-4) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up libssw-java (1.2.5-4) ... Setting up libsnappy1v5:amd64 (1.3.1-4) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up librav1e0.8:amd64 (0.8.1-12) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Setting up libabsl20260526:amd64 (20260526.0-2+b1) ... Setting up libjpeg62-turbo:amd64 (1:3.1.3-4) ... Setting up libx11-data (2:1.8.14-1) ... Setting up libnspr4:amd64 (2:4.40-1) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libapache-pom-java (33-2) ... Setting up libncurses6:amd64 (6.6+20260608-2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-6) ... Setting up libfribidi0:amd64 (1.0.16-5+b1) ... Setting up libimagequant0:amd64 (4.4.1-1+b2) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up fonts-dejavu-mono (2.37-9) ... Setting up libpng16-16t64:amd64 (1.6.59-1) ... Setting up libatomic1:amd64 (16.2.0-4) ... Setting up binfmt-support (2.2.2-8) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up fonts-dejavu-core (2.37-9) ... Setting up libpcsclite1:amd64 (2.5.3-1) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsvtav1enc4:amd64 (4.2.0+dfsg-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libwebp7:amd64 (1.6.0-0.1) ... Setting up libgav1-2:amd64 (0.20.0-2+b2) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libdav1d7:amd64 (1.5.4-1) ... Setting up libtiff6:amd64 (4.7.2-1) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up liblua5.4-0:amd64 (5.4.9-2) ... Setting up libx11-6:amd64 (2:1.8.14-1) ... Setting up libthai-data (0.1.30-3) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up libde265-0:amd64 (1.1.3-1+b1) ... Setting up openssl (3.6.5-1) ... Setting up libwebpmux3:amd64 (1.6.0-0.1) ... Setting up libyuv0:amd64 (0.0.1974.20261008-1) ... Setting up readline-common (8.3-4) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up gnuplot-data (6.0.3+dfsg1-1) ... Setting up libavif16:amd64 (1.4.2-1) ... Setting up libxpm4:amd64 (1:3.5.20-1) ... Setting up libxrender1:amd64 (1:0.9.13-1) ... Setting up jarwrapper (0.82) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libcommons-parent-java (56-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libnss3:amd64 (2:3.132-1) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 120 added, 0 removed; done. Setting up perl (5.42.3-1) ... Setting up libglib2.0-0t64:amd64 (2.90.1-2) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.14.3+dfsg-3) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libharfbuzz0b:amd64 (14.4.0+ds-1) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up ca-certificates-java (20260311) ... which: no java in (/usr/sbin:/usr/bin:/sbin:/bin) No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.23.0-1) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libpython3.14-stdlib:amd64 (3.14.10-1) ... Setting up libcommons-io-java (2.22.0-1) ... Setting up libfilesys-df-perl (0.92-7+b5) ... Setting up openjdk-25-jre-headless:amd64 (25.0.5.0.3+1-1) ... update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libpango-1.0-0:amd64 (1.58.2-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up python3.14 (3.14.10-1) ... Setting up libpangoft2-1.0-0:amd64 (1.58.2-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.2-1) ... Setting up libpython3-stdlib:amd64 (3.14.8-1) ... Setting up libcurl4-gnutls:amd64 (8.23.0-1) ... Setting up libcommons-compress-java (1.28.0-1) ... Setting up libcurl4t64:amd64 (8.23.0-1) ... Setting up python3 (3.14.8-1) ... Setting up libhts3t64:amd64 (1.24-3) ... Setting up samtools (1.24-2) ... Setting up libheif-plugin-libde265:amd64 (1.23.6-2) ... Setting up liberror-prone-java (2.50.0-1) ... Setting up libheif1:amd64 (1.23.6-2) ... Setting up libguava-java (33.7.1-1) ... Setting up libgd3:amd64 (2.3.3-14) ... Setting up gnuplot-nox (6.0.3+dfsg1-1) ... update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up libheif-plugin-dav1d:amd64 (1.23.6-2) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for ca-certificates-java (20260311) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_BR_Root_CA_2_2023.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_2_2023.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_Server_Root_ECC_G1.pem Adding debian:OISTE_Server_Root_RSA_G1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SECOM_TLS_ECC_Root_CA_2024.pem Adding debian:SECOM_TLS_RSA_Root_CA_2024.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_RSA_TLS_Root_CA_2022_-_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:Telia_EC_TLS_Root_CA_v3.pem Adding debian:Telia_RSA_TLS_Root_CA_v3.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:TrustAsia_TLS_ECC_Root_CA.pem Adding debian:TrustAsia_TLS_RSA_Root_CA.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:e-Szigno_TLS_Root_CA_2023.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up default-jre-headless (2:1.25-77) ... Setting up jaligner (1.0+dfsg-11) ... Setting up mhap (2.1.3+dfsg-3) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20260311) ... done. 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m26.9s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m26.9s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmppt3o4115/./tmp/piuparts-depends-dummy.deb 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m26.9s DUMP: piuparts-depends-dummy install ok installed 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m27.0s DUMP: (Reading database ... 11337 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'clean'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'clean'] 0m27.0s DEBUG: Recording chroot state 0m27.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m28.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m29.3s DEBUG: No broken symlinks as far as we can find. 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy'] 0m30.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy', 'canu'] 0m30.5s DUMP: canu: Installed: (none) Candidate: 2.3+dfsg-2 Version table: 2.3+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 2.3+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy', 'canu'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', 'install', 'canu=2.3+dfsg-2'] 0m32.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: nanopolish The following NEW packages will be installed: canu 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 4259 kB of archives. After this operation, 44.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 canu amd64 2.3+dfsg-2 [4259 kB] Fetched 4259 kB in 0s (46.5 MB/s) Selecting previously unselected package canu. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11337 files and directories currently installed.) Preparing to unpack .../canu_2.3+dfsg-2_amd64.deb ... Unpacking canu (2.3+dfsg-2) ... Setting up canu (2.3+dfsg-2) ... 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', 'install', 'canu=2.3+dfsg-2'] 0m32.1s INFO: Running scripts post_install 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_install_exceptions'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_install_exceptions'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'systemd-tmpfiles', '--cat-config'] 0m32.1s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m32.1s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'systemd-tmpfiles', '--cat-config'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'remove', 'canu'] 0m33.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: aglfn binfmt-support ca-certificates-java default-jre-headless fastjar fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gnu-which gnuplot-data gnuplot-nox jaligner jarwrapper java-common libabsl20260526 libaom3 libapache-pom-java libatinject-jsr330-api-java libatomic1 libavif16 libbrotli1 libcairo2 libcom-err2 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-parent-java libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libedit2 liberror-prone-java libexpat1 libfastutil-java libffi8 libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgd3 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libguava-java libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3t64 libhtscodecs2 libimagequant0 libjbig0 libjpeg62-turbo libjspecify-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblua5.4-0 libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnspr4 libnss3 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librav1e0.8 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsnappy1v5 libsqlite3-0 libssh2-1t64 libssw-java libsvtav1enc4 libtasn1-6 libthai-data libthai0 libtiff6 libwebp7 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxpm4 libxrender1 libyuv0 media-types mhap openjdk-25-jre-headless python3 python3-minimal python3.14 python3.14-minimal readline-common samtools Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: canu 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 44.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11426 files and directories currently installed.) Removing canu (2.3+dfsg-2) ... 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'remove', 'canu'] 0m33.3s INFO: Reinstalling after remove 0m33.3s INFO: Running scripts pre_install 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_database-server'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_database-server'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_exceptions'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_exceptions'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_extras'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_extras'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy'] 0m33.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy', 'canu'] 0m33.4s DUMP: canu: Installed: (none) Candidate: 2.3+dfsg-2 Version table: 2.3+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 2.3+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy', 'canu'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', 'install', 'canu=2.3+dfsg-2'] 0m34.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: nanopolish The following NEW packages will be installed: canu 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/4259 kB of archives. After this operation, 44.5 MB of additional disk space will be used. Selecting previously unselected package canu. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11337 files and directories currently installed.) Preparing to unpack .../canu_2.3+dfsg-2_amd64.deb ... Unpacking canu (2.3+dfsg-2) ... Setting up canu (2.3+dfsg-2) ... 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', 'install', 'canu=2.3+dfsg-2'] 0m34.6s INFO: Running scripts post_install 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_install_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_install_exceptions'] 0m34.6s INFO: Running scripts pre_install 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_database-server'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_database-server'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_exceptions'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_extras'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_extras'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy'] 0m34.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy', 'canu'] 0m34.7s DUMP: canu: Installed: 2.3+dfsg-2 Candidate: 2.3+dfsg-2 Version table: *** 2.3+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2.3+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-cache', 'policy', 'canu'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', 'install', '--reinstall', 'canu=2.3+dfsg-2'] 0m36.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/4259 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11426 files and directories currently installed.) Preparing to unpack .../canu_2.3+dfsg-2_amd64.deb ... Unpacking canu (2.3+dfsg-2) over (2.3+dfsg-2) ... Setting up canu (2.3+dfsg-2) ... 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', '-y', 'install', '--reinstall', 'canu=2.3+dfsg-2'] 0m36.3s INFO: Running scripts post_install 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_install_exceptions'] 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_install_exceptions'] 0m36.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m37.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m37.7s DEBUG: No broken symlinks as far as we can find. 0m38.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppt3o4115', '-ac', '--ignore-obsolete'] 0m39.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppt3o4115', '-ac', '--ignore-obsolete'] 0m39.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m39.8s DUMP: 0.17.5+b5 0m39.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m39.8s INFO: Running adequate version 0.17.5+b5 now. 0m39.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'canu'] 0m39.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'canu'] 0m39.8s INFO: Running scripts pre_remove 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_exceptions'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_exceptions'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.3s DUMP: install ok installed aglfn aglfn 1.7+git20191031.4036a9c-2 install ok installed apt apt 3.3.6 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed binfmt-support binfmt-support 2.2.2-8 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed ca-certificates ca-certificates 20260816+nmu1 install ok installed ca-certificates-java ca-certificates-java 20260311 install ok installed canu canu 2.3+dfsg-2 install ok installed coreutils coreutils 9.12-0.3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed default-jre-headless default-jre-headless 2:1.25-77 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed fastjar fastjar 2:0.98-8 install ok installed findutils findutils 4.11.0-3 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-4 install ok installed gnu-which gnu-which 2.21+dfsg-5 install ok installed gnuplot-data gnuplot-data 6.0.3+dfsg1-1 install ok installed gnuplot-nox gnuplot-nox 6.0.3+dfsg1-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed jaligner jaligner 1.0+dfsg-11 install ok installed jarwrapper jarwrapper 0.82 install ok installed java-common java-common 0.77 install ok installed libabsl20260526:amd64 libabsl20260526 20260526.0-2+b1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libaom3:amd64 libaom3 3.14.1-1 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.6 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-6 install ok installed libatomic1:amd64 libatomic1 16.2.0-4 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1+b1 install ok installed libavif16:amd64 libavif16 1.4.2-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4.1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b2 install ok installed libcommons-codec-java libcommons-codec-java 1.23.0-1 install ok installed libcommons-compress-java libcommons-compress-java 1.28.0-1 install ok installed libcommons-io-java libcommons-io-java 2.22.0-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.23.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.23.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdav1d7:amd64 libdav1d7 1.5.4-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-12 install ok installed libde265-0:amd64 libde265-0 1.1.3-1+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libedit2:amd64 libedit2 3.1-20260512-1 install ok installed liberror-prone-java liberror-prone-java 2.50.0-1 install ok installed libexpat1:amd64 libexpat1 2.10.0-1 install ok installed libfastutil-java libfastutil-java 8.5.16+dfsg-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfilesys-df-perl libfilesys-df-perl 0.92-7+b5 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2+b2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-4 install ok installed libgd3:amd64 libgd3 2.3.3-14 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.90.1-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.2.0-4 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libguava-java libguava-java 33.7.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 14.4.0+ds-1 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.23.6-2 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.23.6-2 install ok installed libheif1:amd64 libheif1 1.23.6-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhts3t64:amd64 libhts3t64 1.24-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.7-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libimagequant0:amd64 libimagequant0 4.4.1-1+b2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjspecify-java libjspecify-java 1.0.0-2 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-12 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblcms2-2:amd64 liblcms2-2 2.19.1-1 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.3.0+ds-2 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.9-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncurses6:amd64 libncurses6 6.6+20260608-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libnspr4:amd64 libnspr4 2:4.40-1 install ok installed libnss3:amd64 libnss3 2:3.132-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.2-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.2-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.2-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libpcsclite1:amd64 libpcsclite1 2.5.3-1 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.8-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.59-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1.1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.10-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.10-1 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-12 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-12 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-12 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.6.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.3.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.54.1-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libssw-java libssw-java 1.2.5-4 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-4 install ok installed libsvtav1enc4:amd64 libsvtav1enc4 4.2.0+dfsg-3 install ok installed libsystemd0:amd64 libsystemd0 262.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libwebp7:amd64 libwebp7 1.6.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.6.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.14-1 install ok installed libx11-data libx11-data 2:1.8.14-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxpm4:amd64 libxpm4 1:3.5.20-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.13-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyuv0:amd64 libyuv0 0.0.1974.20261008-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mhap mhap 2.1.3+dfsg-3 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openjdk-25-jre-headless:amd64 openjdk-25-jre-headless 25.0.5.0.3+1-1 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed procps procps 2:4.0.7-1.1 install ok installed python3 python3 3.14.8-1 install ok installed python3-minimal python3-minimal 3.14.8-1 install ok installed python3.14 python3.14 3.14.10-1 install ok installed python3.14-minimal python3.14-minimal 3.14.10-1 install ok installed readline-common readline-common 8.3-4 install ok installed samtools samtools 1.24-2 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'remove', '--allow-remove-essential', 'aglfn', 'binfmt-support', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gnu-which', 'gnuplot-data', 'gnuplot-nox', 'jaligner', 'jarwrapper', 'java-common', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastutil-java', 'libffi8:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjspecify-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblua5.4-0:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpcsclite1:amd64', 'libperl5.42:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw-java', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'mhap', 'netbase', 'openjdk-25-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'samtools', 'canu'] 0m46.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: aglfn binfmt-support ca-certificates ca-certificates-java canu default-jre-headless fastjar fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gnu-which gnuplot-data gnuplot-nox jaligner jarwrapper java-common libabsl20260526 libaom3 libapache-pom-java libatinject-jsr330-api-java libatomic1 libavif16 libbrotli1 libcairo2 libcom-err2 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-parent-java libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libedit2 liberror-prone-java libexpat1 libfastutil-java libffi8 libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgd3 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libguava-java libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3t64 libhtscodecs2 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjspecify-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblua5.4-0 libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnspr4 libnss3 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libperl5.42 libpipeline1 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librav1e0.8 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsnappy1v5 libsqlite3-0 libssh2-1t64 libssw-java libsvtav1enc4 libtasn1-6 libthai-data libthai0 libtiff6 libunistring5 libwebp7 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxpm4 libxrender1 libyuv0 media-types mhap netbase openjdk-25-jre-headless openssl perl perl-modules-5.42 python3 python3-minimal python3.14 python3.14-minimal readline-common samtools 0 upgraded, 0 newly installed, 137 to remove and 0 not upgraded. After this operation, 487 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11426 files and directories currently installed.) Removing canu (2.3+dfsg-2) ... Removing gnuplot-nox (6.0.3+dfsg1-1) ... Removing gnuplot-data (6.0.3+dfsg1-1) ... Removing aglfn (1.7+git20191031.4036a9c-2) ... Removing mhap (2.1.3+dfsg-3) ... Removing jarwrapper (0.82) ... Removing binfmt-support (2.2.2-8) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing jaligner (1.0+dfsg-11) ... Removing default-jre-headless (2:1.25-77) ... Removing openjdk-25-jre-headless:amd64 (25.0.5.0.3+1-1) ... which: no update-binfmts in (/usr/sbin:/usr/bin:/sbin:/bin) Removing ca-certificates-java (20260311) ... Removing ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing fastjar (2:0.98-8) ... Removing libpangocairo-1.0-0:amd64 (1.58.2-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.2-1) ... Removing libpango-1.0-0:amd64 (1.58.2-1) ... Removing fontconfig (2.17.1-5) ... Removing libgd3:amd64 (2.3.3-14) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing gnu-which (2.21+dfsg-5) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode Removing java-common (0.77) ... Removing libavif16:amd64 (1.4.2-1) ... Removing libgav1-2:amd64 (0.20.0-2+b2) ... Removing libabsl20260526:amd64 (20260526.0-2+b1) ... Removing libaom3:amd64 (3.14.1-1) ... Removing libcommons-compress-java (1.28.0-1) ... Removing libcommons-codec-java (1.23.0-1) ... Removing libharfbuzz0b:amd64 (14.4.0+ds-1) ... Removing libglib2.0-0t64:amd64 (2.90.1-2) ... Removing libatomic1:amd64 (16.2.0-4) ... Removing libfreetype6:amd64 (2.14.3+dfsg-3) ... Removing libcurl4t64:amd64 (8.23.0-1) ... Removing samtools (1.24-2) ... Removing libhts3t64:amd64 (1.24-3) ... Removing libcurl4-gnutls:amd64 (8.23.0-1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b2) ... Removing libcommons-io-java (2.22.0-1) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libedit2:amd64 (3.1-20260512-1) ... Removing python3 (3.14.8-1) ... Removing python3.14 (3.14.10-1) ... Removing python3-minimal (3.14.8-1) ... Removing python3.14-minimal (3.14.10-1) ... Removing libexpat1:amd64 (2.10.0-1) ... Removing libfastutil-java (8.5.16+dfsg-1) ... Removing libpython3-stdlib:amd64 (3.14.8-1) ... Removing libpython3.14-stdlib:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libfilesys-df-perl (0.92-7+b5) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgomp1:amd64 (16.2.0-4) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libhtscodecs2:amd64 (1.6.7-1) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libimagequant0:amd64 (4.4.1-1+b2) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libyuv0:amd64 (0.0.1974.20261008-1) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing liblcms2-2:amd64 (2.19.1-1) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.3.0+ds-2) ... Removing liblua5.4-0:amd64 (5.4.9-2) ... Removing libncurses6:amd64 (6.6+20260608-2) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libnss3:amd64 (2:3.132-1) ... Removing libnspr4:amd64 (2:4.40-1) ... Removing libpcsclite1:amd64 (2.5.3-1) ... Removing libpipeline1:amd64 (1.5.8-3) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libpng16-16t64:amd64 (1.6.59-1) ... Removing libpython3.14-minimal:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing librav1e0.8:amd64 (0.8.1-12) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Removing libwebpmux3:amd64 (1.6.0-0.1) ... Removing libwebp7:amd64 (1.6.0-0.1) ... Removing libsnappy1v5:amd64 (1.3.1-4) ... Removing libsqlite3-0:amd64 (3.54.1-2) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libssw-java (1.2.5-4) ... Removing libsvtav1enc4:amd64 (4.2.0+dfsg-3) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libthai-data (0.1.30-3) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxrender1:amd64 (1:0.9.13-1) ... Removing libxpm4:amd64 (1:3.5.20-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing openssl (3.6.5-1) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing readline-common (8.3-4) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Removing libx11-6:amd64 (2:1.8.14-1) ... Removing libx11-data (2:1.8.14-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libguava-java (33.7.1-1) ... Removing liberror-prone-java (2.50.0-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-6) ... Removing libheif1:amd64 (1.23.6-2) ... Removing libheif-plugin-libde265:amd64 (1.23.6-2) ... Removing libbrotli1:amd64 (1.2.0-4.1) ... Removing libde265-0:amd64 (1.1.3-1+b1) ... Removing libjspecify-java (1.0.0-2) ... Removing libjsr305-java (0.1~+svn49-12) ... Removing libsharpyuv0:amd64 (1.6.0-0.1) ... Removing libheif-plugin-dav1d:amd64 (1.23.6-2) ... Removing libdav1d7:amd64 (1.5.4-1) ... Processing triggers for libc-bin (2.43-7) ... 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'remove', '--allow-remove-essential', 'aglfn', 'binfmt-support', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gnu-which', 'gnuplot-data', 'gnuplot-nox', 'jaligner', 'jarwrapper', 'java-common', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastutil-java', 'libffi8:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjspecify-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblua5.4-0:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpcsclite1:amd64', 'libperl5.42:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw-java', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'mhap', 'netbase', 'openjdk-25-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'samtools', 'canu'] 0m46.0s INFO: Running scripts post_remove 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_remove_cleanup'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_remove_cleanup'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_remove_exceptions'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_remove_exceptions'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', 'aglfn', 'binfmt-support', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gnu-which', 'gnuplot-data', 'gnuplot-nox', 'jaligner', 'jarwrapper', 'java-common', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastutil-java', 'libffi8:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjspecify-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblua5.4-0:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpcsclite1:amd64', 'libperl5.42:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw-java', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'mhap', 'netbase', 'openjdk-25-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'samtools'] 0m46.5s DUMP: dpkg: warning: ignoring request to remove aglfn which is not installed (Reading database ... 5566 files and directories currently installed.) Purging configuration files for binfmt-support (2.2.2-8) ... Purging configuration files for ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20260311) ... dpkg: warning: ignoring request to remove default-jre-headless which is not installed dpkg: warning: ignoring request to remove fastjar which is not installed Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove gnu-which which is not installed dpkg: warning: ignoring request to remove gnuplot-data which is not installed dpkg: warning: ignoring request to remove gnuplot-nox which is not installed dpkg: warning: ignoring request to remove jaligner which is not installed dpkg: warning: ignoring request to remove jarwrapper which is not installed Purging configuration files for java-common (0.77) ... dpkg: warning: ignoring request to remove libabsl20260526 which is not installed dpkg: warning: ignoring request to remove libaom3 which is not installed dpkg: warning: ignoring request to remove libapache-pom-java which is not installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libavif16 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcommons-codec-java which is not installed dpkg: warning: ignoring request to remove libcommons-compress-java which is not installed dpkg: warning: ignoring request to remove libcommons-io-java which is not installed dpkg: warning: ignoring request to remove libcommons-parent-java which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libde265-0 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libedit2 which is not installed dpkg: warning: ignoring request to remove liberror-prone-java which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libfastutil-java which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfilesys-df-perl which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgav1-2 which is not installed dpkg: warning: ignoring request to remove libgd3 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.90.1-2) ... dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libguava-java which is not installed dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which is not installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which is not installed dpkg: warning: ignoring request to remove libheif1 which is not installed dpkg: warning: ignoring request to remove libhts3t64 which is not installed dpkg: warning: ignoring request to remove libhtscodecs2 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libimagequant0 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libjspecify-java which is not installed dpkg: warning: ignoring request to remove libjsr305-java which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblcms2-2 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove liblua5.4-0 which is not installed dpkg: warning: ignoring request to remove libncurses6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libnspr4 which is not installed dpkg: warning: ignoring request to remove libnss3 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpcsclite1 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpipeline1 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.10-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove librav1e0.8 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libssw-java which is not installed dpkg: warning: ignoring request to remove libsvtav1enc4 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxpm4 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libyuv0 which is not installed Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove mhap which is not installed Purging configuration files for netbase (6.6) ... Purging configuration files for openjdk-25-jre-headless:amd64 (25.0.5.0.3+1-1) ... Purging configuration files for openssl (3.6.5-1) ... Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed Purging configuration files for python3 (3.14.8-1) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.10-1) ... Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove samtools which is not installed 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', 'aglfn', 'binfmt-support', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gnu-which', 'gnuplot-data', 'gnuplot-nox', 'jaligner', 'jarwrapper', 'java-common', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastutil-java', 'libffi8:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjspecify-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblua5.4-0:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpcsclite1:amd64', 'libperl5.42:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw-java', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'mhap', 'netbase', 'openjdk-25-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.42', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'samtools'] 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', 'canu'] 0m46.6s DUMP: dpkg: warning: ignoring request to remove canu which is not installed 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', 'canu'] 0m46.6s INFO: Running scripts post_purge 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_purge_exceptions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_purge_exceptions'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_purge_manual_cleanup'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_purge_manual_cleanup'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', '--pending'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--purge', '--pending'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--remove', '--pending'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg', '--remove', '--pending'] 0m46.6s INFO: Running scripts post_test 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_test_exceptions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'tmp/scripts/post_test_exceptions'] 0m46.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m46.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m47.3s DEBUG: No broken symlinks as far as we can find. 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-divert', '--list'] 0m47.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'dpkg-divert', '--list'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'clean'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppt3o4115', 'apt-get', 'clean'] 0m47.3s DEBUG: Recording chroot state 0m48.7s INFO: PASS: Installation and purging test. 0m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/shm'] 0m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/shm'] 0m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/console'] 0m49.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/console'] 0m49.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/ptmx'] 0m49.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/ptmx'] 0m49.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/pts'] 0m49.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/dev/pts'] 0m49.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/proc'] 0m49.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppt3o4115/proc'] 0m49.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m49.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppt3o4115'] 0m49.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppt3o4115 0m49.3s INFO: PASS: All tests. 0m49.3s INFO: piuparts run ends. ret=0 End: 2026-11-05 15:14:20 GMT