Start: 2024-03-28 05:40:20 GMT Package: libbiojava-java Source: biojava-live Version: 1:1.9.7+dfsg-1 Installed-Size: 19 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbiojava1.7-java Depends: libbiojava1.9-java Conflicts: libbiojava1.7-java Description: Java API to biological data and applications (default version) Homepage: https://www.biojava.org Description-md5: 6680837a07d5ec02bc947ca5b946490e Tag: devel::lang:java, devel::library, field::biology, field::biology:bioinformatics, implemented-in::java, role::devel-lib Section: java Priority: optional Filename: pool/main/b/biojava-live/libbiojava-java_1.9.7+dfsg-1_all.deb Size: 5512 MD5sum: ab782163f0e532230201e8c8b6fd1191 SHA256: 35f95518a1301f6d796384fd45a31b594f7faf2d824b352f3d3281169ea477c8 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libbiojava-java=1:1.9.7+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libbiojava-java=1:1.9.7+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpu_mb332n 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpu_mb332n 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpu_mb332n/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpu_mb332n/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'update'] 0m4.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9941 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7210 kB] Fetched 17.3 MB in 3s (6103 kB/s) Reading package lists... 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'update'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 liblzma5 libmount1 libsmartcols1 libuuid1 mount util-linux 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2222 kB of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-11 [97.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-11 [30.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-11 [160 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-11 [191 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-11 [117 kB] Get:6 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-11 [1231 kB] Get:7 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-11 [143 kB] Get:8 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.1-1 [252 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2222 kB in 0s (31.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.3-11_amd64.deb ... Unpacking bsdutils (1:2.39.3-11) over (1:2.39.3-10) ... Setting up bsdutils (1:2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../libuuid1_2.39.3-11_amd64.deb ... Unpacking libuuid1:amd64 (2.39.3-11) over (2.39.3-10) ... Setting up libuuid1:amd64 (2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-11_amd64.deb ... Unpacking libblkid1:amd64 (2.39.3-11) over (2.39.3-10) ... Setting up libblkid1:amd64 (2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-11_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-11) over (2.39.3-10) ... Setting up libmount1:amd64 (2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.3-11_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.3-11) over (2.39.3-10) ... Setting up libsmartcols1:amd64 (2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-11_amd64.deb ... Unpacking util-linux (2.39.3-11) over (2.39.3-10) ... Setting up util-linux (2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../mount_2.39.3-11_amd64.deb ... Unpacking mount (2.39.3-11) over (2.39.3-10) ... Preparing to unpack .../liblzma5_5.6.1-1_amd64.deb ... Unpacking liblzma5:amd64 (5.6.1-1) over (5.6.0-0.2) ... Setting up liblzma5:amd64 (5.6.1-1) ... Setting up mount (2.39.3-11) ... Processing triggers for libc-bin (2.37-15.1) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.8s DUMP: f78d94cc65baa5ca86620c6b02fb172a - 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.8s INFO: Running scripts post_setup 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_fake-essential'] 0m9.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.66). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 670 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 670 kB in 0s (14.4 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.22) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_fake-essential'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_forbid_home'] 0m9.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_forbid_home'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_minimize'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_minimize'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_zz_backports'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_setup_zz_backports'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'clean'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'clean'] 0m9.4s DEBUG: Recording chroot state 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.0s DUMP: install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-11 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240315-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.39.3-11 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-15.1 install ok installed libc6:amd64 libc6 2.37-15.1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240315-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.3-1.1+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0g:amd64 libpam0g 1.5.3-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-11 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.1.5-1.1 install ok installed libstdc++6:amd64 libstdc++6 14-20240315-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.39.3-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-11 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-divert', '--list'] 0m10.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-divert', '--list'] 0m10.0s INFO: Running scripts is_testable 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/is_testable_uninstallable'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/is_testable_uninstallable'] 0m10.0s INFO: apt-cache does not know about any of the requested packages 0m10.0s INFO: Running scripts pre_test 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_test_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_test_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_test_root_password'] 0m10.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_test_root_password'] 0m10.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m11.2s DEBUG: No broken symlinks as far as we can find. 0m11.2s INFO: Running scripts pre_install 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_database-server'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_database-server'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_exceptions'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_exceptions'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_extras'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_extras'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'show', '--no-all-versions', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m12.6s DUMP: Package: libbiojava-java Source: biojava-live Version: 1:1.9.7+dfsg-1 Installed-Size: 19 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libbiojava1.7-java Depends: libbiojava1.9-java Conflicts: libbiojava1.7-java Description-en: Java API to biological data and applications (default version) BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit. . BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list. . This is a dependency package which should enable smooth upgrades to new versions. Description-md5: 6680837a07d5ec02bc947ca5b946490e Homepage: https://www.biojava.org Tag: devel::lang:java, devel::library, field::biology, field::biology:bioinformatics, implemented-in::java, role::devel-lib Section: java Priority: optional Filename: pool/main/b/biojava-live/libbiojava-java_1.9.7+dfsg-1_all.deb Size: 5512 MD5sum: ab782163f0e532230201e8c8b6fd1191 SHA256: 35f95518a1301f6d796384fd45a31b594f7faf2d824b352f3d3281169ea477c8 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'show', '--no-all-versions', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m12.6s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: libbiojava1.9-java Conflicts: libbiojava1.7-java Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m12.6s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpkvaq2nsw/piuparts-depends-dummy'] 0m12.6s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpkvaq2nsw/piuparts-depends-dummy.deb'. 0m12.6s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpkvaq2nsw/piuparts-depends-dummy'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m12.6s DUMP: 2.7.14 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m12.6s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpkvaq2nsw/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpu_mb332n/tmp 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m14.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libatinject-jsr330-api-java libbiojava1.9-java libcommons-dbcp-java libcommons-pool-java liberror-prone-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java Suggested packages: libatinject-jsr330-api-java-doc libbiojava-java libbiojava-java-doc libgeronimo-jta-1.2-spec-java libjsr305-java-doc The following NEW packages will be installed: libatinject-jsr330-api-java libbiojava1.9-java libcommons-dbcp-java libcommons-pool-java liberror-prone-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java piuparts-depends-dummy 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 6604 kB/6605 kB of archives. After this operation, 7824 kB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [650 B] Get:2 http://deb.debian.org/debian sid/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:3 http://deb.debian.org/debian sid/main amd64 libcommons-pool-java all 1.6-5 [109 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libcommons-dbcp-java all 1.4-8 [157 kB] Get:5 http://deb.debian.org/debian sid/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libjgraph-java all 5.12.4.2+dfsg-7 [207 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libjgrapht0.8-java all 0.8.3-6 [214 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libbiojava1.9-java all 1:1.9.7+dfsg-1 [3154 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6604 kB in 0s (70.7 MB/s) Selecting previously unselected package libatinject-jsr330-api-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5571 files and directories currently installed.) Preparing to unpack .../0-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libcommons-pool-java. Preparing to unpack .../1-libcommons-pool-java_1.6-5_all.deb ... Unpacking libcommons-pool-java (1.6-5) ... Selecting previously unselected package libcommons-dbcp-java. Preparing to unpack .../2-libcommons-dbcp-java_1.4-8_all.deb ... Unpacking libcommons-dbcp-java (1.4-8) ... Selecting previously unselected package liberror-prone-java. Preparing to unpack .../3-liberror-prone-java_2.18.0-1_all.deb ... Unpacking liberror-prone-java (2.18.0-1) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../4-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../5-libguava-java_32.0.1-1_all.deb ... Unpacking libguava-java (32.0.1-1) ... Selecting previously unselected package libjgraph-java. Preparing to unpack .../6-libjgraph-java_5.12.4.2+dfsg-7_all.deb ... Unpacking libjgraph-java (5.12.4.2+dfsg-7) ... Selecting previously unselected package libjgrapht0.8-java. Preparing to unpack .../7-libjgrapht0.8-java_0.8.3-6_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-6) ... Selecting previously unselected package libbiojava1.9-java. Preparing to unpack .../8-libbiojava1.9-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava1.9-java (1:1.9.7+dfsg-1) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../9-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libcommons-pool-java (1.6-5) ... Setting up libjgraph-java (5.12.4.2+dfsg-7) ... Setting up libcommons-dbcp-java (1.4-8) ... Setting up libjgrapht0.8-java (0.8.3-6) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libbiojava1.9-java (1:1.9.7+dfsg-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m14.2s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m14.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpu_mb332n/./tmp/piuparts-depends-dummy.deb 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m14.2s DUMP: piuparts-depends-dummy install ok installed 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m14.2s DUMP: (Reading database ... 5831 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'clean'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'clean'] 0m14.3s DEBUG: Recording chroot state 0m14.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m15.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m15.8s DEBUG: No broken symlinks as far as we can find. 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy'] 0m16.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy', 'libbiojava-java'] 0m17.0s DUMP: libbiojava-java: Installed: (none) Candidate: 1:1.9.7+dfsg-1 Version table: 1:1.9.7+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy', 'libbiojava-java'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', 'install', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m18.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libbiojava-java 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 5512 B of archives. After this operation, 19.5 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libbiojava-java all 1:1.9.7+dfsg-1 [5512 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 5512 B in 0s (231 kB/s) Selecting previously unselected package libbiojava-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5831 files and directories currently installed.) Preparing to unpack .../libbiojava-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava-java (1:1.9.7+dfsg-1) ... Setting up libbiojava-java (1:1.9.7+dfsg-1) ... 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', 'install', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m18.0s INFO: Running scripts post_install 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_install_exceptions'] 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_install_exceptions'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'remove', 'libbiojava-java'] 0m19.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libatinject-jsr330-api-java libbiojava1.9-java libcommons-dbcp-java libcommons-pool-java liberror-prone-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libbiojava-java 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 19.5 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5835 files and directories currently installed.) Removing libbiojava-java (1:1.9.7+dfsg-1) ... 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'remove', 'libbiojava-java'] 0m19.0s INFO: Reinstalling after remove 0m19.0s INFO: Running scripts pre_install 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_database-server'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_database-server'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_exceptions'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_exceptions'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_extras'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_extras'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy'] 0m19.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy', 'libbiojava-java'] 0m19.2s DUMP: libbiojava-java: Installed: (none) Candidate: 1:1.9.7+dfsg-1 Version table: 1:1.9.7+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy', 'libbiojava-java'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', 'install', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m20.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libbiojava-java debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/5512 B of archives. After this operation, 19.5 kB of additional disk space will be used. Selecting previously unselected package libbiojava-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5831 files and directories currently installed.) Preparing to unpack .../libbiojava-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava-java (1:1.9.7+dfsg-1) ... Setting up libbiojava-java (1:1.9.7+dfsg-1) ... 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', 'install', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m20.2s INFO: Running scripts post_install 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_install_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_install_exceptions'] 0m20.2s INFO: Running scripts pre_install 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_database-server'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_database-server'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_exceptions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_extras'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_extras'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy'] 0m20.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy', 'libbiojava-java'] 0m20.3s DUMP: libbiojava-java: Installed: 1:1.9.7+dfsg-1 Candidate: 1:1.9.7+dfsg-1 Version table: *** 1:1.9.7+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-cache', 'policy', 'libbiojava-java'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', 'install', '--reinstall', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m21.4s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/5512 B of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5835 files and directories currently installed.) Preparing to unpack .../libbiojava-java_1%3a1.9.7+dfsg-1_all.deb ... Unpacking libbiojava-java (1:1.9.7+dfsg-1) over (1:1.9.7+dfsg-1) ... Setting up libbiojava-java (1:1.9.7+dfsg-1) ... 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', '-y', 'install', '--reinstall', 'libbiojava-java=1:1.9.7+dfsg-1'] 0m21.4s INFO: Running scripts post_install 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_install_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_install_exceptions'] 0m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m21.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m22.6s DEBUG: No broken symlinks as far as we can find. 0m22.6s INFO: /bin converted to /usr/bin by /usr merge 0m22.6s INFO: /lib converted to /usr/lib by /usr merge 0m22.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m22.6s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m22.6s INFO: /sbin converted to /usr/sbin by /usr merge 0m23.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', '-ac', '--ignore-obsolete'] 0m24.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', '-ac', '--ignore-obsolete'] 0m24.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.1s DUMP: 0.15.6 0m24.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.1s INFO: Running adequate version 0.15.6 now. 0m24.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'libbiojava-java'] 0m24.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'libbiojava-java'] 0m24.2s INFO: Running scripts pre_remove 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DUMP: install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-11 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240315-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libbiojava-java libbiojava-java 1:1.9.7+dfsg-1 install ok installed libbiojava1.9-java libbiojava1.9-java 1:1.9.7+dfsg-1 install ok installed libblkid1:amd64 libblkid1 2.39.3-11 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-15.1 install ok installed libc6:amd64 libc6 2.37-15.1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcommons-dbcp-java libcommons-dbcp-java 1.4-8 install ok installed libcommons-pool-java libcommons-pool-java 1.6-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240315-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.3-1.1+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjgraph-java libjgraph-java 5.12.4.2+dfsg-7 install ok installed libjgrapht0.8-java libjgrapht0.8-java 0.8.3-6 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0g:amd64 libpam0g 1.5.3-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-11 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.1.5-1.1 install ok installed libstdc++6:amd64 libstdc++6 14-20240315-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.39.3-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-11 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'remove', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libbiojava-java'] 0m26.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libatinject-jsr330-api-java libbiojava-java libbiojava1.9-java libcommons-dbcp-java libcommons-pool-java liberror-prone-java libguava-java libjgraph-java libjgrapht0.8-java libjsr305-java 0 upgraded, 0 newly installed, 10 to remove and 0 not upgraded. After this operation, 7844 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5835 files and directories currently installed.) Removing libbiojava-java (1:1.9.7+dfsg-1) ... Removing libbiojava1.9-java (1:1.9.7+dfsg-1) ... Removing libcommons-dbcp-java (1.4-8) ... Removing libcommons-pool-java (1.6-5) ... Removing libjgrapht0.8-java (0.8.3-6) ... Removing libjgraph-java (5.12.4.2+dfsg-7) ... Removing libguava-java (32.0.1-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libjsr305-java (0.1~+svn49-11) ... 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'remove', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java', 'libbiojava-java'] 0m26.0s INFO: Running scripts post_remove 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_remove_cleanup'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_remove_cleanup'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_remove_exceptions'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_remove_exceptions'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java'] 0m26.0s DUMP: dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libbiojava1.9-java which isn't installed dpkg: warning: ignoring request to remove libcommons-dbcp-java which isn't installed dpkg: warning: ignoring request to remove libcommons-pool-java which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libjgraph-java which isn't installed dpkg: warning: ignoring request to remove libjgrapht0.8-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', 'libatinject-jsr330-api-java', 'libbiojava1.9-java', 'libcommons-dbcp-java', 'libcommons-pool-java', 'liberror-prone-java', 'libguava-java', 'libjgraph-java', 'libjgrapht0.8-java', 'libjsr305-java'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', 'libbiojava-java'] 0m26.1s DUMP: dpkg: warning: ignoring request to remove libbiojava-java which isn't installed 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', 'libbiojava-java'] 0m26.1s INFO: Running scripts post_purge 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_purge_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_purge_exceptions'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_purge_manual_cleanup'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_purge_manual_cleanup'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', '--pending'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--purge', '--pending'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--remove', '--pending'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg', '--remove', '--pending'] 0m26.1s INFO: Running scripts post_test 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_test_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'tmp/scripts/post_test_exceptions'] 0m26.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m26.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m27.3s DEBUG: No broken symlinks as far as we can find. 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-divert', '--list'] 0m27.3s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'dpkg-divert', '--list'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'clean'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpu_mb332n', 'apt-get', 'clean'] 0m27.3s DEBUG: Recording chroot state 0m28.0s INFO: PASS: Installation and purging test. 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/shm'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/shm'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/console'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/console'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/ptmx'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/ptmx'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/pts'] 0m28.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/dev/pts'] 0m28.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/proc'] 0m28.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpu_mb332n/proc'] 0m28.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m28.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpu_mb332n'] 0m28.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpu_mb332n 0m28.7s INFO: PASS: All tests. 0m28.7s INFO: piuparts run ends. ret=0 End: 2024-03-28 05:40:49 GMT