Start: 2024-10-31 15:20:52 GMT Package: libpicard-java Source: picard-tools Version: 3.1.1+dfsg-1 Installed-Size: 1839 Maintainer: Debian Med Packaging Team Architecture: all Depends: libhtsjdk-java (>= 3.0.2+dfsg), libbarclay-java, libgkl-java, libcommons-lang3-java, libcommons-math3-java, libgatk-native-bindings-java Recommends: r-base-core Suggests: picard-tools Description: Java library to manipulate SAM and BAM files Homepage: https://broadinstitute.github.io/picard/ Description-md5: fd011bcd3681f58c02bb5072a25e58bc Section: java Priority: optional Filename: pool/main/p/picard-tools/libpicard-java_3.1.1+dfsg-1_all.deb Size: 1743128 MD5sum: 2d0c8bb852a88061d3b34e87b068389f SHA256: 3a6012325799833be8ec508ff6568425d6fc9fb3ea7aa7a68a1e39c4843e6d2c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libpicard-java=3.1.1+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libpicard-java=3.1.1+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpqyi0mxx4 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpqyi0mxx4 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpqyi0mxx4/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpqyi0mxx4/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'update'] 0m3.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7333 kB] Fetched 17.6 MB in 2s (7669 kB/s) Reading package lists... 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'update'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libaudit-common libaudit1 libcap2 libgmp10 libgnutls30t64 libhogweed6t64 libidn2-0 liblz4-1 liblzma5 libmd0 libnettle8t64 libp11-kit0 libpam-modules libpam-modules-bin libpam0g libpcre2-8-0 libseccomp2 libtasn1-6 libtinfo6 libunistring5 libxxhash0 libzstd1 ncurses-bin zlib1g 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6041 kB of archives. After this operation, 98.3 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.5-2+b1 [434 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-2 [12.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-2 [54.4 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7+b1 [68.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7+b1 [54.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7+b1 [267 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5+b1 [27.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b2 [560 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10-1+b1 [305 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10-1+b1 [335 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1+b1 [429 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-2+b1 [429 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.6-2+b1 [1446 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b2 [26.6 kB] Get:17 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-3+b1 [60.3 kB] Get:18 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.3-1+b1 [272 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b2 [266 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1+b2 [47.4 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.5-2+b1 [344 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.6+dfsg-1+b1 [300 kB] Get:24 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6041 kB in 0s (60.3 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5150 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2+b1) over (1.1.0-2) ... Setting up libmd0:amd64 (1.1.0-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5151 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4+b2_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4+b2) over (10.42-4+b1) ... Setting up libpcre2-8-0:amd64 (10.42-4+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5151 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1+b2_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1+b2) over (2.5.5-1+b1) ... Setting up libseccomp2:amd64 (2.5.5-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5151 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.5-2+b1_amd64.deb ... Unpacking libtinfo6:amd64 (6.5-2+b1) over (6.5-2) ... Setting up libtinfo6:amd64 (6.5-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5152 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.6+dfsg-1+b1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.6+dfsg-1+b1) over (1.5.6+dfsg-1) ... Setting up libzstd1:amd64 (1.5.6+dfsg-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5153 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) over (1:1.3.dfsg+really1.3.1-1) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Processing triggers for libc-bin (2.40-3) ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: c0c93e5ca6112ccde1493fba2cfe7721 - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_dummy_users'] 0m7.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_dummy_users'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_fake-essential'] 0m8.7s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.67). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 672 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 672 kB in 0s (15.6 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5154 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.24) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_fake-essential'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_forbid_home'] 0m8.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_forbid_home'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_minimize'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_minimize'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_zz_backports'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_setup_zz_backports'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'clean'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'clean'] 0m8.8s DEBUG: Recording chroot state 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.2s DUMP: install ok installed apt apt 2.9.10 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-7 install ok installed gpgv gpgv 2.2.45-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.1-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-2 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272+b1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b2 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b2 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 256.7-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 256.7-2 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-divert', '--list'] 0m9.2s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-divert', '--list'] 0m9.2s INFO: Running scripts is_testable 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/is_testable_uninstallable'] 0m9.2s INFO: apt-cache does not know about any of the requested packages 0m9.2s INFO: Running scripts pre_test 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_test_exceptions'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_test_root_password'] 0m9.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_test_root_password'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m9.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m10.0s DEBUG: No broken symlinks as far as we can find. 0m10.0s INFO: Running scripts pre_install 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_database-server'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_exceptions'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_extras'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'show', '--no-all-versions', 'libpicard-java=3.1.1+dfsg-1'] 0m11.0s DUMP: Package: libpicard-java Source: picard-tools Version: 3.1.1+dfsg-1 Installed-Size: 1839 Maintainer: Debian Med Packaging Team Architecture: all Depends: libhtsjdk-java (>= 3.0.2+dfsg), libbarclay-java, libgkl-java, libcommons-lang3-java, libcommons-math3-java, libgatk-native-bindings-java Recommends: r-base-core Suggests: picard-tools Description-en: Java library to manipulate SAM and BAM files SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. This library provides classes to manipulate SAM and BAM files. . A command line wrapper for this library is provided in the picard-tools package. Description-md5: fd011bcd3681f58c02bb5072a25e58bc Homepage: https://broadinstitute.github.io/picard/ Section: java Priority: optional Filename: pool/main/p/picard-tools/libpicard-java_3.1.1+dfsg-1_all.deb Size: 1743128 MD5sum: 2d0c8bb852a88061d3b34e87b068389f SHA256: 3a6012325799833be8ec508ff6568425d6fc9fb3ea7aa7a68a1e39c4843e6d2c 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'show', '--no-all-versions', 'libpicard-java=3.1.1+dfsg-1'] 0m11.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: libhtsjdk-java (>= 3.0.2+dfsg), libbarclay-java, libgkl-java, libcommons-lang3-java, libcommons-math3-java, libgatk-native-bindings-java Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m11.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp2738wrin/piuparts-depends-dummy'] 0m11.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp2738wrin/piuparts-depends-dummy.deb'. 0m11.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp2738wrin/piuparts-depends-dummy'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.0s DUMP: 2.9.10 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp2738wrin/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpqyi0mxx4/tmp 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m13.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libapache-pom-java libbarclay-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libfreemarker-java libgatk-native-bindings-java libgkl-java libgoogle-gson-java libhtsjdk-java libhttpclient-java libhttpcore-java libjoptsimple-java liblightcouch-java liblog4j2-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmjson-java libmongodb-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni librhino-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 ncbi-vdb-data Suggested packages: libasm-java libxz-java libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java jython libdom4j-java libjaxen-java libjdom1-java libxalan2-java libgoogle-gson-java-doc picard-tools python3 libactivation-java libcommons-csv-java libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java libjctools-java libjeromq-java libmail-java libwoodstox-java libngs-java-doc rhino Recommended packages: libgkl-jni The following NEW packages will be installed: libapache-pom-java libbarclay-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libfreemarker-java libgatk-native-bindings-java libgkl-java libgoogle-gson-java libhtsjdk-java libhttpclient-java libhttpcore-java libjoptsimple-java liblightcouch-java liblog4j2-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmjson-java libmongodb-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni librhino-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 ncbi-vdb-data piuparts-depends-dummy 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 18.5 MB/18.5 MB of archives. After this operation, 28.6 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [700 B] Get:2 http://deb.debian.org/debian sid/main amd64 libapache-pom-java all 33-2 [5852 B] Get:3 http://deb.debian.org/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libcommons-lang3-java all 3.17.0-1 [641 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libfreemarker-java all 2.3.32-2 [1546 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgoogle-gson-java all 2.10.1-1 [262 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libjoptsimple-java all 5.0.4-6 [73.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.17.1-1 [303 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblightcouch-java all 0.2.0-1 [75.0 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get:15 http://deb.debian.org/debian sid/main amd64 liblog4j2-java all 2.19.0-2 [2310 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libbarclay-java all 5.0.0+dfsg-1 [108 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libcommons-io-java all 2.17.0-1 [488 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgatk-native-bindings-java all 1.0.0+dfsg-2 [8024 B] Get:22 http://deb.debian.org/debian sid/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.2-1 [355 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.2-1 [147 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.2-1 [233 kB] Get:26 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1189 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7 [157 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libngs-jni amd64 3.0.9+dfsg-7 [25.6 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libngs-java amd64 3.0.9+dfsg-7 [112 kB] Get:31 http://deb.debian.org/debian sid/main amd64 librhino-java all 1.7.15-1 [1382 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libsnappy-jni amd64 1.1.10.5-2 [6396 B] Get:34 http://deb.debian.org/debian sid/main amd64 libsnappy-java all 1.1.10.5-2 [87.5 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libhtsjdk-java all 4.1.0+dfsg-2 [1833 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libgkl-java all 0.8.11+dfsg-2 [24.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.5 MB in 0s (63.4 MB/s) Selecting previously unselected package libapache-pom-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5506 files and directories currently installed.) Preparing to unpack .../00-libapache-pom-java_33-2_all.deb ... Unpacking libapache-pom-java (33-2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../01-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-lang3-java. Preparing to unpack .../02-libcommons-lang3-java_3.17.0-1_all.deb ... Unpacking libcommons-lang3-java (3.17.0-1) ... Selecting previously unselected package libfreemarker-java. Preparing to unpack .../03-libfreemarker-java_2.3.32-2_all.deb ... Unpacking libfreemarker-java (2.3.32-2) ... Selecting previously unselected package libgoogle-gson-java. Preparing to unpack .../04-libgoogle-gson-java_2.10.1-1_all.deb ... Unpacking libgoogle-gson-java (2.10.1-1) ... Selecting previously unselected package libjoptsimple-java. Preparing to unpack .../05-libjoptsimple-java_5.0.4-6_all.deb ... Unpacking libjoptsimple-java (5.0.4-6) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../06-libcommons-codec-java_1.17.1-1_all.deb ... Unpacking libcommons-codec-java (1.17.1-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../07-libcommons-logging-java_1.3.0-1_all.deb ... Unpacking libcommons-logging-java (1.3.0-1) ... Selecting previously unselected package libhttpcore-java. Preparing to unpack .../08-libhttpcore-java_4.4.16-1_all.deb ... Unpacking libhttpcore-java (4.4.16-1) ... Selecting previously unselected package libhttpclient-java. Preparing to unpack .../09-libhttpclient-java_4.5.14-1_all.deb ... Unpacking libhttpclient-java (4.5.14-1) ... Selecting previously unselected package liblightcouch-java. Preparing to unpack .../10-liblightcouch-java_0.2.0-1_all.deb ... Unpacking liblightcouch-java (0.2.0-1) ... Selecting previously unselected package libmongodb-java. Preparing to unpack .../11-libmongodb-java_3.6.3-2_all.deb ... Unpacking libmongodb-java (3.6.3-2) ... Selecting previously unselected package libslf4j-java. Preparing to unpack .../12-libslf4j-java_1.7.32-1_all.deb ... Unpacking libslf4j-java (1.7.32-1) ... Selecting previously unselected package liblog4j2-java. Preparing to unpack .../13-liblog4j2-java_2.19.0-2_all.deb ... Unpacking liblog4j2-java (2.19.0-2) ... Selecting previously unselected package libbarclay-java. Preparing to unpack .../14-libbarclay-java_5.0.0+dfsg-1_all.deb ... Unpacking libbarclay-java (5.0.0+dfsg-1) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../15-libcommons-io-java_2.17.0-1_all.deb ... Unpacking libcommons-io-java (2.17.0-1) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../16-libcommons-compress-java_1.27.1-2_all.deb ... Unpacking libcommons-compress-java (1.27.1-2) ... Selecting previously unselected package libcommons-jexl2-java. Preparing to unpack .../17-libcommons-jexl2-java_2.1.1-6_all.deb ... Unpacking libcommons-jexl2-java (2.1.1-6) ... Selecting previously unselected package libcommons-math3-java. Preparing to unpack .../18-libcommons-math3-java_3.6.1-3_all.deb ... Unpacking libcommons-math3-java (3.6.1-3) ... Selecting previously unselected package libgatk-native-bindings-java. Preparing to unpack .../19-libgatk-native-bindings-java_1.0.0+dfsg-2_all.deb ... Unpacking libgatk-native-bindings-java (1.0.0+dfsg-2) ... Selecting previously unselected package libmjson-java. Preparing to unpack .../20-libmjson-java_1.4.0-3_all.deb ... Unpacking libmjson-java (1.4.0-3) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../21-libmbedcrypto16_3.6.2-1_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.2-1) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../22-libmbedx509-7_3.6.2-1_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.2-1) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../23-libmbedtls21_3.6.2-1_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.2-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../24-ncbi-vdb-data_3.0.9+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.0.9+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../25-libncbi-vdb3_3.0.9+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Selecting previously unselected package libncbi-ngs3:amd64. Preparing to unpack .../26-libncbi-ngs3_3.0.9+dfsg-7_amd64.deb ... Unpacking libncbi-ngs3:amd64 (3.0.9+dfsg-7) ... Selecting previously unselected package libngs-jni:amd64. Preparing to unpack .../27-libngs-jni_3.0.9+dfsg-7_amd64.deb ... Unpacking libngs-jni:amd64 (3.0.9+dfsg-7) ... Selecting previously unselected package libngs-java:amd64. Preparing to unpack .../28-libngs-java_3.0.9+dfsg-7_amd64.deb ... Unpacking libngs-java:amd64 (3.0.9+dfsg-7) ... Selecting previously unselected package librhino-java. Preparing to unpack .../29-librhino-java_1.7.15-1_all.deb ... Unpacking librhino-java (1.7.15-1) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../30-libsnappy1v5_1.2.1-1+b1_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.2.1-1+b1) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../31-libsnappy-jni_1.1.10.5-2_amd64.deb ... Unpacking libsnappy-jni (1.1.10.5-2) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../32-libsnappy-java_1.1.10.5-2_all.deb ... Unpacking libsnappy-java (1.1.10.5-2) ... Selecting previously unselected package libhtsjdk-java. Preparing to unpack .../33-libhtsjdk-java_4.1.0+dfsg-2_all.deb ... Unpacking libhtsjdk-java (4.1.0+dfsg-2) ... Selecting previously unselected package libgkl-java. Preparing to unpack .../34-libgkl-java_0.8.11+dfsg-2_all.deb ... Unpacking libgkl-java (0.8.11+dfsg-2) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../35-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libslf4j-java (1.7.32-1) ... Setting up libgatk-native-bindings-java (1.0.0+dfsg-2) ... Setting up libgoogle-gson-java (2.10.1-1) ... Setting up libmjson-java (1.4.0-3) ... Setting up libsnappy1v5:amd64 (1.2.1-1+b1) ... Setting up librhino-java (1.7.15-1) ... Setting up libapache-pom-java (33-2) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libfreemarker-java (2.3.32-2) ... Setting up ncbi-vdb-data (3.0.9+dfsg-2) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up libmbedcrypto16:amd64 (3.6.2-1) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libjoptsimple-java (5.0.4-6) ... Setting up libsnappy-jni (1.1.10.5-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libmbedx509-7:amd64 (3.6.2-1) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up libmbedtls21:amd64 (3.6.2-1) ... Setting up libsnappy-java (1.1.10.5-2) ... Setting up libcommons-codec-java (1.17.1-1) ... Setting up libcommons-io-java (2.17.0-1) ... Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7) ... Setting up libngs-jni:amd64 (3.0.9+dfsg-7) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up libngs-java:amd64 (3.0.9+dfsg-7) ... Setting up libhtsjdk-java (4.1.0+dfsg-2) ... Setting up libbarclay-java (5.0.0+dfsg-1) ... Setting up libgkl-java (0.8.11+dfsg-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m13.8s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m13.8s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpqyi0mxx4/./tmp/piuparts-depends-dummy.deb 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m13.9s DUMP: piuparts-depends-dummy install ok installed 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m13.9s DUMP: (Reading database ... 6286 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'clean'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'clean'] 0m13.9s DEBUG: Recording chroot state 0m14.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m14.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m15.3s DEBUG: No broken symlinks as far as we can find. 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy'] 0m16.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy', 'libpicard-java'] 0m16.1s DUMP: libpicard-java: Installed: (none) Candidate: 3.1.1+dfsg-1 Version table: 3.1.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy', 'libpicard-java'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', 'install', 'libpicard-java=3.1.1+dfsg-1'] 0m17.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: picard-tools Recommended packages: r-base-core The following NEW packages will be installed: libpicard-java 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1743 kB of archives. After this operation, 1883 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpicard-java all 3.1.1+dfsg-1 [1743 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1743 kB in 0s (36.8 MB/s) Selecting previously unselected package libpicard-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6286 files and directories currently installed.) Preparing to unpack .../libpicard-java_3.1.1+dfsg-1_all.deb ... Unpacking libpicard-java (3.1.1+dfsg-1) ... Setting up libpicard-java (3.1.1+dfsg-1) ... 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', 'install', 'libpicard-java=3.1.1+dfsg-1'] 0m17.5s INFO: Running scripts post_install 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'remove', 'libpicard-java'] 0m18.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapache-pom-java libbarclay-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libfreemarker-java libgatk-native-bindings-java libgkl-java libgoogle-gson-java libhtsjdk-java libhttpclient-java libhttpcore-java libjoptsimple-java liblightcouch-java liblog4j2-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmjson-java libmongodb-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni librhino-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 ncbi-vdb-data Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libpicard-java 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 1883 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6299 files and directories currently installed.) Removing libpicard-java (3.1.1+dfsg-1) ... 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'remove', 'libpicard-java'] 0m18.6s INFO: Reinstalling after remove 0m18.6s INFO: Running scripts pre_install 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_database-server'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_database-server'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_exceptions'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_exceptions'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_extras'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_extras'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy'] 0m18.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy', 'libpicard-java'] 0m18.8s DUMP: libpicard-java: Installed: (none) Candidate: 3.1.1+dfsg-1 Version table: 3.1.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy', 'libpicard-java'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', 'install', 'libpicard-java=3.1.1+dfsg-1'] 0m19.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: picard-tools Recommended packages: r-base-core The following NEW packages will be installed: libpicard-java debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1743 kB of archives. After this operation, 1883 kB of additional disk space will be used. Selecting previously unselected package libpicard-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6286 files and directories currently installed.) Preparing to unpack .../libpicard-java_3.1.1+dfsg-1_all.deb ... Unpacking libpicard-java (3.1.1+dfsg-1) ... Setting up libpicard-java (3.1.1+dfsg-1) ... 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', 'install', 'libpicard-java=3.1.1+dfsg-1'] 0m19.8s INFO: Running scripts post_install 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_install_exceptions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_install_exceptions'] 0m19.9s INFO: Running scripts pre_install 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_database-server'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_exceptions'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_extras'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy'] 0m19.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy', 'libpicard-java'] 0m20.0s DUMP: libpicard-java: Installed: 3.1.1+dfsg-1 Candidate: 3.1.1+dfsg-1 Version table: *** 3.1.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-cache', 'policy', 'libpicard-java'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', 'install', '--reinstall', 'libpicard-java=3.1.1+dfsg-1'] 0m20.8s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/1743 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6299 files and directories currently installed.) Preparing to unpack .../libpicard-java_3.1.1+dfsg-1_all.deb ... Unpacking libpicard-java (3.1.1+dfsg-1) over (3.1.1+dfsg-1) ... Setting up libpicard-java (3.1.1+dfsg-1) ... 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', '-y', 'install', '--reinstall', 'libpicard-java=3.1.1+dfsg-1'] 0m20.8s INFO: Running scripts post_install 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_install_exceptions'] 0m20.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m21.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m21.6s DEBUG: No broken symlinks as far as we can find. 0m22.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', '-ac', '--ignore-obsolete'] 0m22.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', '-ac', '--ignore-obsolete'] 0m22.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.7s DUMP: 0.15.6 0m22.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.7s INFO: Running adequate version 0.15.6 now. 0m22.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'libpicard-java'] 0m22.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'libpicard-java'] 0m22.7s INFO: Running scripts pre_remove 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_exceptions'] 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_exceptions'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.7s DUMP: install ok installed apt apt 2.9.10 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.5 install ok installed bash bash 5.2.32-1+b2 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1+b1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-7 install ok installed gpgv gpgv 2.2.45-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.1-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-2 install ok installed libbarclay-java libbarclay-java 5.0.0+dfsg-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-3 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1+b1 install ok installed libcommons-codec-java libcommons-codec-java 1.17.1-1 install ok installed libcommons-compress-java libcommons-compress-java 1.27.1-2 install ok installed libcommons-io-java libcommons-io-java 2.17.0-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang3-java libcommons-lang3-java 3.17.0-1 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-3 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272+b1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfreemarker-java libfreemarker-java 2.3.32-2 install ok installed libgatk-native-bindings-java libgatk-native-bindings-java 1.0.0+dfsg-2 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgkl-java libgkl-java 0.8.11+dfsg-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2+b1 install ok installed libgoogle-gson-java libgoogle-gson-java 2.10.1-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1+b1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.0+dfsg-2 install ok installed libhttpclient-java libhttpclient-java 4.5.14-1 install ok installed libhttpcore-java libhttpcore-java 4.4.16-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2+b1 install ok installed libjoptsimple-java libjoptsimple-java 5.0.4-6 install ok installed liblightcouch-java liblightcouch-java 0.2.0-1 install ok installed liblog4j2-java liblog4j2-java 2.19.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3+b1 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.2-1 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.2-1 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.2-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmjson-java libmjson-java 1.4.0-3 install ok installed libmongodb-java libmongodb-java 3.6.3-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.9+dfsg-7 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.9+dfsg-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1+b1 install ok installed libngs-java:amd64 libngs-java 3.0.9+dfsg-7 install ok installed libngs-jni:amd64 libngs-jni 3.0.9+dfsg-7 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7+b1 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b2 install ok installed libpicard-java libpicard-java 3.1.1+dfsg-1 install ok installed librhino-java librhino-java 1.7.15-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b2 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libslf4j-java libslf4j-java 1.7.32-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libsnappy-java libsnappy-java 1.1.10.5-2 install ok installed libsnappy-jni libsnappy-jni 1.1.10.5-2 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.1-1+b1 install ok installed libss2:amd64 libss2 1.47.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 256.7-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b3 install ok installed libtinfo6:amd64 libtinfo6 6.5-2+b1 install ok installed libudev1:amd64 libudev1 256.7-2 install ok installed libunistring5:amd64 libunistring5 1.2-1+b1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1+b1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1+b1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.9+dfsg-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-2 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.40.0-6 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.11-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'remove', 'libapache-pom-java', 'libbarclay-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libfreemarker-java', 'libgatk-native-bindings-java', 'libgkl-java', 'libgoogle-gson-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libjoptsimple-java', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libmongodb-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'librhino-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'ncbi-vdb-data', 'libpicard-java'] 0m24.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libapache-pom-java libbarclay-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libfreemarker-java libgatk-native-bindings-java libgkl-java libgoogle-gson-java libhtsjdk-java libhttpclient-java libhttpcore-java libjoptsimple-java liblightcouch-java liblog4j2-java libmbedcrypto16 libmbedtls21 libmbedx509-7 libmjson-java libmongodb-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libpicard-java librhino-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 ncbi-vdb-data 0 upgraded, 0 newly installed, 36 to remove and 0 not upgraded. After this operation, 30.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6299 files and directories currently installed.) Removing libpicard-java (3.1.1+dfsg-1) ... Removing libgkl-java (0.8.11+dfsg-2) ... Removing libhtsjdk-java (4.1.0+dfsg-2) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing libbarclay-java (5.0.0+dfsg-1) ... Removing liblog4j2-java (2.19.0-2) ... Removing liblightcouch-java (0.2.0-1) ... Removing libhttpclient-java (4.5.14-1) ... Removing libcommons-logging-java (1.3.0-1) ... Removing libcommons-lang3-java (3.17.0-1) ... Removing libcommons-compress-java (1.27.1-2) ... Removing libcommons-codec-java (1.17.1-1) ... Removing libcommons-io-java (2.17.0-1) ... Removing libcommons-math3-java (3.6.1-3) ... Removing libfreemarker-java (2.3.32-2) ... Removing libgatk-native-bindings-java (1.0.0+dfsg-2) ... Removing libgoogle-gson-java (2.10.1-1) ... Removing libhttpcore-java (4.4.16-1) ... Removing libjoptsimple-java (5.0.4-6) ... Removing libngs-java:amd64 (3.0.9+dfsg-7) ... Removing libngs-jni:amd64 (3.0.9+dfsg-7) ... Removing libncbi-ngs3:amd64 (3.0.9+dfsg-7) ... Removing libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... Removing libmbedtls21:amd64 (3.6.2-1) ... Removing libmbedx509-7:amd64 (3.6.2-1) ... Removing libmbedcrypto16:amd64 (3.6.2-1) ... Removing libmjson-java (1.4.0-3) ... Removing libmongodb-java (3.6.3-2) ... Removing librhino-java (1.7.15-1) ... Removing libslf4j-java (1.7.32-1) ... Removing libsnappy-java (1.1.10.5-2) ... Removing libsnappy-jni (1.1.10.5-2) ... Removing libsnappy1v5:amd64 (1.2.1-1+b1) ... Removing ncbi-vdb-data (3.0.9+dfsg-2) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Processing triggers for libc-bin (2.40-3) ... 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'remove', 'libapache-pom-java', 'libbarclay-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libfreemarker-java', 'libgatk-native-bindings-java', 'libgkl-java', 'libgoogle-gson-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libjoptsimple-java', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libmongodb-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'librhino-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'ncbi-vdb-data', 'libpicard-java'] 0m24.6s INFO: Running scripts post_remove 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_remove_cleanup'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_remove_cleanup'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_remove_exceptions'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_remove_exceptions'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', 'libapache-pom-java', 'libbarclay-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libfreemarker-java', 'libgatk-native-bindings-java', 'libgkl-java', 'libgoogle-gson-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libjoptsimple-java', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libmongodb-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'librhino-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'ncbi-vdb-data'] 0m24.6s DUMP: dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libbarclay-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libfreemarker-java which isn't installed dpkg: warning: ignoring request to remove libgatk-native-bindings-java which isn't installed dpkg: warning: ignoring request to remove libgkl-java which isn't installed dpkg: warning: ignoring request to remove libgoogle-gson-java which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libjoptsimple-java which isn't installed dpkg: warning: ignoring request to remove liblightcouch-java which isn't installed dpkg: warning: ignoring request to remove liblog4j2-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libmjson-java which isn't installed dpkg: warning: ignoring request to remove libmongodb-java which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', 'libapache-pom-java', 'libbarclay-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libfreemarker-java', 'libgatk-native-bindings-java', 'libgkl-java', 'libgoogle-gson-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libjoptsimple-java', 'liblightcouch-java', 'liblog4j2-java', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmjson-java', 'libmongodb-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'librhino-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'ncbi-vdb-data'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', 'libpicard-java'] 0m24.6s DUMP: dpkg: warning: ignoring request to remove libpicard-java which isn't installed 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', 'libpicard-java'] 0m24.6s INFO: Running scripts post_purge 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_purge_exceptions'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_purge_exceptions'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_purge_manual_cleanup'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_purge_manual_cleanup'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', '--pending'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--purge', '--pending'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--remove', '--pending'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg', '--remove', '--pending'] 0m24.6s INFO: Running scripts post_test 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_test_exceptions'] 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'tmp/scripts/post_test_exceptions'] 0m24.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m25.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m25.8s DEBUG: No broken symlinks as far as we can find. 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-divert', '--list'] 0m25.8s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'dpkg-divert', '--list'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'clean'] 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4', 'apt-get', 'clean'] 0m25.9s DEBUG: Recording chroot state 0m26.5s INFO: PASS: Installation and purging test. 0m26.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/shm'] 0m26.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/shm'] 0m26.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/console'] 0m27.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/console'] 0m27.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/ptmx'] 0m27.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/ptmx'] 0m27.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/pts'] 0m27.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/dev/pts'] 0m27.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/proc'] 0m27.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4/proc'] 0m27.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m27.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqyi0mxx4'] 0m27.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpqyi0mxx4 0m27.2s INFO: PASS: All tests. 0m27.2s INFO: piuparts run ends. ret=0 End: 2024-10-31 15:21:19 GMT