Start: 2024-10-07 16:45:21 GMT Package: libsnpsift-java Source: snpsift Version: 5.2.e+dfsg-1 Installed-Size: 408 Maintainer: Debian Med Packaging Team Architecture: all Depends: antlr4, libcommons-math3-java (>= 3.6.1), libhtsjdk-java (>= 3.0.2), libsnpeff-java, libtrove3-java Description: tool to annotate and manipulate genome variants - lib Homepage: https://pcingola.github.io/SnpEff/ss_introduction/ Description-md5: 0d188edd72ea4636cec6d43d2985d850 Section: java Priority: optional Filename: pool/main/s/snpsift/libsnpsift-java_5.2.e+dfsg-1_all.deb Size: 371472 MD5sum: bed2f7332194c9fcaad211326145d89d SHA256: 4578eccb63f5df60f1098641b7d6802b9e7e3cc6b08c42c8de5d4b4837344386 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libsnpsift-java=5.2.e+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt libsnpsift-java=5.2.e+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmped12r8hg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmped12r8hg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmped12r8hg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmped12r8hg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmped12r8hg/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmped12r8hg/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmped12r8hg/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmped12r8hg/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'update'] 0m3.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9998 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7327 kB] Fetched 17.5 MB in 2s (7643 kB/s) Reading package lists... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'update'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-14-base libgcc-s1 libstdc++6 tzdata 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1090 kB of archives. After this operation, 256 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-6 [46.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-6 [715 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-6 [72.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 tzdata all 2024b-2 [256 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1090 kB in 0s (21.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5138 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-6_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-6) over (14.2.0-5) ... Setting up gcc-14-base:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5138 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-6) over (14.2.0-5) ... Setting up libstdc++6:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5138 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-6_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-6) over (14.2.0-5) ... Setting up libgcc-s1:amd64 (14.2.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5138 files and directories currently installed.) Preparing to unpack .../tzdata_2024b-2_all.deb ... Unpacking tzdata (2024b-2) over (2024b-1) ... Setting up tzdata (2024b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 7 16:45:26 UTC 2024. Universal Time is now: Mon Oct 7 16:45:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.40-3) ... 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.6s DUMP: 4cc978d123f4ce111fb27f97136fb52e - 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.6s INFO: Running scripts post_setup 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_fake-essential'] 0m7.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.67). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 672 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 672 kB in 0s (13.1 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5138 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.24) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_fake-essential'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_forbid_home'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'clean'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'clean'] 0m8.0s DEBUG: Recording chroot state 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.6-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-2 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-divert', '--list'] 0m8.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-divert', '--list'] 0m8.6s INFO: Running scripts is_testable 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s INFO: apt-cache does not know about any of the requested packages 0m8.6s INFO: Running scripts pre_test 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_test_root_password'] 0m8.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_test_root_password'] 0m8.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m9.8s DEBUG: No broken symlinks as far as we can find. 0m9.8s INFO: Running scripts pre_install 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_extras'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_extras'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'show', '--no-all-versions', 'libsnpsift-java=5.2.e+dfsg-1'] 0m10.8s DUMP: Package: libsnpsift-java Source: snpsift Version: 5.2.e+dfsg-1 Installed-Size: 408 Maintainer: Debian Med Packaging Team Architecture: all Depends: antlr4, libcommons-math3-java (>= 3.6.1), libhtsjdk-java (>= 3.0.2), libsnpeff-java, libtrove3-java Description-en: tool to annotate and manipulate genome variants - lib SnpSift is a toolbox that allows one to filter and manipulate annotated files. Once the genomic variants have been annotated, one needs to filter them out in order to find the "interesting / relevant variants". Given the large data files, this is not a trivial task (e.g. one cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and filtering required at this stage in data processing pipelines. . This package contains the library. Description-md5: 0d188edd72ea4636cec6d43d2985d850 Homepage: https://pcingola.github.io/SnpEff/ss_introduction/ Section: java Priority: optional Filename: pool/main/s/snpsift/libsnpsift-java_5.2.e+dfsg-1_all.deb Size: 371472 MD5sum: bed2f7332194c9fcaad211326145d89d SHA256: 4578eccb63f5df60f1098641b7d6802b9e7e3cc6b08c42c8de5d4b4837344386 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'show', '--no-all-versions', 'libsnpsift-java=5.2.e+dfsg-1'] 0m10.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: antlr4, libcommons-math3-java (>= 3.6.1), libhtsjdk-java (>= 3.0.2), libsnpeff-java, libtrove3-java Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m10.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpkwudjey1/piuparts-depends-dummy'] 0m10.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpkwudjey1/piuparts-depends-dummy.deb'. 0m10.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpkwudjey1/piuparts-depends-dummy'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.9s DUMP: 2.9.8 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpkwudjey1/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmped12r8hg/tmp 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m27.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ant ant-optional antlr4 ca-certificates ca-certificates-java default-jre-headless java-common junit4 junit5 libactivation-java libantlr3-runtime-java libantlr4-runtime-java libaopalliance-java libapache-pom-java libapfloat-java libapiguardian-java libargs4j-java libasm-java libatinject-jsr330-api-java libbiojava6-java libcdi-api-java libcharts4j-java libciftools-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-exec-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-parent-java libcommons-text-java libdistlib-java libdom4j-java libdtd-parser-java liberror-prone-java libexec-maven-plugin-java libfastinfoset-java libfastutil-java libfreemarker-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgoogle-gson-java libguava-java libguice-java libhamcrest-java libhtsjdk-java libhttpclient-java libhttpcore-java libicu4j-java libinchi1.07 libistack-commons-java libitext5-java libjackson2-annotations-java libjackson2-core-java libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java libjgrapht-java libjgraphx-java libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni libjpeg62-turbo libjson-simple-java libjsonp-java libjsoup-java libjsr305-java liblcms2-2 liblog4j1.2-java libmaven-archiver-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmjson-java libmmtf-java libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libnspr4 libnss3 libopentest4j-java libopentest4j-reporting-java libpcsclite1 libpicocli-java libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java librelaxng-datatype-java librhino-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsnpeff-java libsqlite3-0 libstax-ex-java libstreambuffer-java libstringtemplate4-java libtreelayout-java libtrove3-java libtxw2-java libunivocity-parsers-java libvecmath-java libwagon-http-java libwagon-provider-api-java libxbean-reflect-java libxerces2-java libxml-commons-external-java libxml-commons-resolver1.1-java libxsom-java libxz-java ncbi-vdb-data openjdk-21-jre-headless openssl Suggested packages: ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liboro-java libregexp-java libxalan2-java default-jre libatinject-jsr330-api-java-doc libbiojava6-java-doc libel-api-java libcommons-lang-java-doc libavalon-framework-java libexcalibur-logkit-java libdistlib-java-doc libmsv-java libxpp2-java libxpp3-java libjdom1-java libgoogle-gson-java-doc libcglib-java picard-tools python3 libbcpkix-java libbcprov-java libxml-security-java libjackson2-annotations-java-doc libxom-java libjmol-java-doc libjson-simple-doc libjsonp-java-doc libjsoup-java-doc libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc libmaven-file-management-java-doc libmaven-shared-utils-java-doc liblogback-java libmmtf-java-doc libngs-java-doc pcscd libeclipse-jdt-core-java libplexus-utils2-java-doc rhino testng libsnpeff-java-doc libxerces2-java-doc libxml-commons-resolver1.1-java-doc libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic Recommended packages: libjansi-java libcups2t64 libfontconfig1 libfreetype6 libharfbuzz0b libasound2t64 The following NEW packages will be installed: ant ant-optional antlr4 ca-certificates ca-certificates-java default-jre-headless java-common junit4 junit5 libactivation-java libantlr3-runtime-java libantlr4-runtime-java libaopalliance-java libapache-pom-java libapfloat-java libapiguardian-java libargs4j-java libasm-java libatinject-jsr330-api-java libbiojava6-java libcdi-api-java libcharts4j-java libciftools-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-exec-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-parent-java libcommons-text-java libdistlib-java libdom4j-java libdtd-parser-java liberror-prone-java libexec-maven-plugin-java libfastinfoset-java libfastutil-java libfreemarker-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgoogle-gson-java libguava-java libguice-java libhamcrest-java libhtsjdk-java libhttpclient-java libhttpcore-java libicu4j-java libinchi1.07 libistack-commons-java libitext5-java libjackson2-annotations-java libjackson2-core-java libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java libjgrapht-java libjgraphx-java libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni libjpeg62-turbo libjson-simple-java libjsonp-java libjsoup-java libjsr305-java liblcms2-2 liblog4j1.2-java libmaven-archiver-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmjson-java libmmtf-java libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libnspr4 libnss3 libopentest4j-java libopentest4j-reporting-java libpcsclite1 libpicocli-java libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java librelaxng-datatype-java librhino-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsnpeff-java libsqlite3-0 libstax-ex-java libstreambuffer-java libstringtemplate4-java libtreelayout-java libtrove3-java libtxw2-java libunivocity-parsers-java libvecmath-java libwagon-http-java libwagon-provider-api-java libxbean-reflect-java libxerces2-java libxml-commons-external-java libxml-commons-resolver1.1-java libxsom-java libxz-java ncbi-vdb-data openjdk-21-jre-headless openssl piuparts-depends-dummy 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB/153 MB of archives. After this operation, 365 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [684 B] Get:2 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get:3 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:4 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:5 http://deb.debian.org/debian sid/main amd64 java-common all 0.76 [6776 B] Get:6 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.35-1.1+b1 [109 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.105-2 [1393 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.3.0-1 [55.4 kB] Get:12 http://deb.debian.org/debian sid/main amd64 openjdk-21-jre-headless amd64 21.0.5~8ea-1 [41.8 MB] Get:13 http://deb.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.21-76 [3192 B] Get:14 http://deb.debian.org/debian sid/main amd64 ant all 1.10.15-1 [2163 kB] Get:15 http://deb.debian.org/debian sid/main amd64 ant-optional all 1.10.15-1 [456 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libantlr4-runtime-java all 4.9.2-2 [317 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libantlr3-runtime-java all 3.5.3-2 [165 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libicu4j-java all 73.2-1 [16.4 MB] Get:19 http://deb.debian.org/debian sid/main amd64 libjsonp-java all 1.1.2-4 [127 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libstringtemplate4-java all 4.3.3-1 [247 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libtreelayout-java all 1.0.3-2 [27.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 antlr4 all 4.9.2-2 [1399 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get:24 http://deb.debian.org/debian sid/main amd64 junit4 all 4.13.2-4 [349 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libapiguardian-java all 1.1.2-1 [4656 B] Get:26 http://deb.debian.org/debian sid/main amd64 libopentest4j-java all 1.2.0-4 [9516 B] Get:27 http://deb.debian.org/debian sid/main amd64 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libpicocli-java all 4.6.2-2 [390 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libunivocity-parsers-java all 2.9.1-1 [397 kB] Get:30 http://deb.debian.org/debian sid/main amd64 junit5 all 5.10.3-1 [2459 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libaopalliance-java all 20070526-7 [8572 B] Get:33 http://deb.debian.org/debian sid/main amd64 libapache-pom-java all 29-2 [5276 B] Get:34 http://deb.debian.org/debian sid/main amd64 libapfloat-java all 1.13.0-1 [700 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libargs4j-java all 2.33-2 [138 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libasm-java all 9.7-2 [390 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:38 http://deb.debian.org/debian sid/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libgoogle-gson-java all 2.10.1-1 [262 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libciftools-java all 6.0.0-1 [2211 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.16.0-1 [297 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libcommons-math-java all 2.2-8 [926 kB] Get:44 http://deb.debian.org/debian sid/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libitext5-java all 5.5.13.3-4 [2667 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libjackson2-annotations-java all 2.14.0-1 [68.8 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libjackson2-core-java all 2.14.1-1 [447 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libjackson2-databind-java all 2.14.0-1 [1584 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libdom4j-java all 2.1.4-1 [312 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libcommons-io-java all 2.16.1-1 [480 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libcommons-lang3-java all 3.14.0-1 [621 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libmaven-parent-java all 35-1 [6140 B] Get:60 http://deb.debian.org/debian sid/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libmaven-resolver-java all 1.6.3-1 [548 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get:66 http://deb.debian.org/debian sid/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:69 http://deb.debian.org/debian sid/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libmaven3-core-java all 3.8.8-1 [1579 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 1.25.0-1 [635 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.1-1 [29.1 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libsnappy-jni amd64 1.1.10.5-2 [6396 B] Get:80 http://deb.debian.org/debian sid/main amd64 libsnappy-java all 1.1.10.5-2 [87.5 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libxz-java all 1.9-1 [143 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libjsoup-java all 1.15.3-1 [431 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libwagon-http-java all 3.5.3-1 [49.5 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] Get:90 http://deb.debian.org/debian sid/main amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.7 kB] Get:91 http://deb.debian.org/debian sid/main amd64 librngom-java all 2.3.0.1-10.1 [290 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libxsom-java all 2.3.0.1-10.1 [400 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libtxw2-java all 2.3.0.1-10.1 [134 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libjaxb-java all 2.3.0.1-10.1 [1973 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libmaven-archiver-java all 3.6.0-1 [25.1 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libcommons-text-java all 1.11.0-1 [217 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libfastutil-java all 8.5.14+dfsg-1 [19.8 MB] Get:104 http://deb.debian.org/debian sid/main amd64 libjheaps-java all 0.14-2 [144 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libjgraphx-java all 2.1.0.7-4 [807 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libjgrapht-java all 1.5.2-1 [1610 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libinchi1.07 amd64 1.07.1+dfsg-4 [556 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libjni-inchi-jni amd64 0.8+dfsg-8 [9188 B] Get:111 http://deb.debian.org/debian sid/main amd64 libcommons-exec-java all 1.3-2 [48.1 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libexec-maven-plugin-java all 3.1.0-2 [66.7 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libmaven-shared-incremental-java all 1.1-6 [9916 B] Get:114 http://deb.debian.org/debian sid/main amd64 libcommons-lang-java all 2.6-10 [273 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libxbean-reflect-java all 4.5-8 [133 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libplexus-container-default-java all 2.1.1-1 [193 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libplexus-compiler-java all 2.12.1-3 [99.3 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libqdox2-java all 2.0.3-1 [296 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libplexus-languages-java all 1.1.1-2 [47.3 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libmaven-compiler-plugin-java all 3.10.1-2 [59.0 kB] Get:121 http://deb.debian.org/debian sid/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libjni-inchi-java all 0.8+dfsg-8 [33.6 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libnaga-java all 3.0+svn80-5 [43.5 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libjmol-java all 16.2.15+dfsg-1 [8956 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libjson-simple-java all 2.3.0-1 [63.8 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libmsgpack-java all 0.9.6-1 [161 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libmmtf-java all 1.0.11-1 [187 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libvecmath-java all 1.5.2-7 [97.0 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libbiojava6-java all 6.1.0+dfsg-4 [5367 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libcharts4j-java all 1.3-4 [162 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libdistlib-java all 1.0-5 [72.5 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libfreemarker-java all 2.3.32-2 [1546 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get:139 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.0.2+dfsg-2+b1 [1049 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libncbi-ngs3 amd64 3.0.3+dfsg-9 [155 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libngs-jni amd64 3.0.3+dfsg-9 [23.8 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libngs-java amd64 3.0.3+dfsg-9 [110 kB] Get:144 http://deb.debian.org/debian sid/main amd64 librhino-java all 1.7.14-2.1 [1357 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libhtsjdk-java all 4.1.0+dfsg-2 [1833 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libtrove3-java all 3.0.3-5 [2146 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libsnpeff-java all 5.2.e+dfsg-1 [2157 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 153 MB in 1s (183 MB/s) Selecting previously unselected package openssl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5490 files and directories currently installed.) Preparing to unpack .../000-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../002-ca-certificates-java_20240118_all.deb ... 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Setting up libantlr3-runtime-java (3.5.3-2) ... Setting up libtrove3-java (3.0.3-5) ... Setting up libfreemarker-java (2.3.32-2) ... Setting up libjsoup-java (1.15.3-1) ... Setting up libcommons-math-java (2.2-8) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up libxbean-reflect-java (4.5-8) ... Setting up libopentest4j-java (1.2.0-4) ... Setting up libjackson2-core-java (2.14.1-1) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... Setting up openssl (3.3.2-1) ... Setting up libjsonp-java (1.1.2-4) ... Setting up libinchi1.07 (1.07.1+dfsg-4) ... Setting up libcdi-api-java (1.2-3) ... Setting up libsnappy-jni (1.1.10.5-2) ... Setting up libargs4j-java (2.33-2) ... Setting up libnaga-java (3.0+svn80-5) ... Setting up libdom4j-java (2.1.4-1) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libstringtemplate4-java (4.3.3-1) ... Setting up libplexus-languages-java (1.1.1-2) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libmaven-parent-java (35-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:amd64 (2:3.105-2) ... Setting up libciftools-java (6.0.0-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libjackson2-databind-java (2.14.0-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libcommons-lang3-java (3.14.0-1) ... Setting up librngom-java (2.3.0.1-10.1) ... Setting up libjni-inchi-jni (0.8+dfsg-8) ... Setting up libjgraphx-java (2.1.0.7-4) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libsnappy-java (1.1.10.5-2) ... Setting up libxsom-java (2.3.0.1-10.1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.16.0-1) ... Setting up openjdk-21-jre-headless:amd64 (21.0.5~8ea-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libcommons-compress-java (1.25.0-1) ... Setting up libcommons-io-java (2.16.1-1) ... Setting up libdistlib-java (1.0-5) ... Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2+b1) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up libncbi-ngs3:amd64 (3.0.3+dfsg-9) ... Setting up libngs-jni:amd64 (3.0.3+dfsg-9) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libplexus-archiver-java (4.6.1-1) ... Setting up libngs-java:amd64 (3.0.3+dfsg-9) ... Setting up libhtsjdk-java (4.1.0+dfsg-2) ... Setting up libmaven-archiver-java (3.6.0-1) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (4.2.3-2) ... Setting up libmaven3-core-java (3.8.8-1) ... Setting up libmaven-shared-incremental-java (1.1-6) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up libplexus-compiler-java (2.12.1-3) ... Setting up libmaven-compiler-plugin-java (3.10.1-2) ... Setting up libjni-inchi-java (0.8+dfsg-8) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libjmol-java (16.2.15+dfsg-1) ... Setting up libmaven-jar-plugin-java (3.3.0-2) ... Setting up libcommons-text-java (1.11.0-1) ... Setting up libmsgpack-java (0.9.6-1) ... Setting up libmmtf-java (1.0.11-1) ... Setting up libjgrapht-java (1.5.2-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-4) ... Setting up default-jre-headless (2:1.21-76) ... Setting up antlr4 (4.9.2-2) ... Setting up ant-optional (1.10.15-1) ... Setting up junit5 (5.10.3-1) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... Setting up libtxw2-java (2.3.0.1-10.1) ... Setting up libjaxb-java (2.3.0.1-10.1) ... Setting up libbiojava6-java (6.1.0+dfsg-4) ... Setting up libsnpeff-java (5.2.e+dfsg-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m27.3s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m27.3s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmped12r8hg/./tmp/piuparts-depends-dummy.deb 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m27.3s DUMP: piuparts-depends-dummy install ok installed 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m27.4s DUMP: (Reading database ... 9951 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'clean'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'clean'] 0m27.4s DEBUG: Recording chroot state 0m27.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m28.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m29.4s DEBUG: No broken symlinks as far as we can find. 0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy'] 0m30.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy', 'libsnpsift-java'] 0m30.1s DUMP: libsnpsift-java: Installed: (none) Candidate: 5.2.e+dfsg-1 Version table: 5.2.e+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy', 'libsnpsift-java'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', 'install', 'libsnpsift-java=5.2.e+dfsg-1'] 0m31.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libsnpsift-java 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 371 kB of archives. After this operation, 418 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libsnpsift-java all 5.2.e+dfsg-1 [371 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 371 kB in 0s (8380 kB/s) Selecting previously unselected package libsnpsift-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9951 files and directories currently installed.) Preparing to unpack .../libsnpsift-java_5.2.e+dfsg-1_all.deb ... Unpacking libsnpsift-java (5.2.e+dfsg-1) ... Setting up libsnpsift-java (5.2.e+dfsg-1) ... 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', 'install', 'libsnpsift-java=5.2.e+dfsg-1'] 0m31.2s INFO: Running scripts post_install 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_install_exceptions'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_install_exceptions'] 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'remove', 'libsnpsift-java'] 0m32.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ant ant-optional antlr4 ca-certificates-java default-jre-headless java-common junit4 junit5 libactivation-java libantlr3-runtime-java libantlr4-runtime-java libaopalliance-java libapache-pom-java libapfloat-java libapiguardian-java libargs4j-java libasm-java libatinject-jsr330-api-java libbiojava6-java libcdi-api-java libcharts4j-java libciftools-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-exec-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-parent-java libcommons-text-java libdistlib-java libdom4j-java libdtd-parser-java liberror-prone-java libexec-maven-plugin-java libfastinfoset-java libfastutil-java libfreemarker-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgoogle-gson-java libguava-java libguice-java libhamcrest-java libhtsjdk-java libhttpclient-java libhttpcore-java libicu4j-java libinchi1.07 libistack-commons-java libitext5-java libjackson2-annotations-java libjackson2-core-java libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java libjgrapht-java libjgraphx-java libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni libjpeg62-turbo libjson-simple-java libjsonp-java libjsoup-java libjsr305-java liblcms2-2 liblog4j1.2-java libmaven-archiver-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmjson-java libmmtf-java libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libnspr4 libnss3 libopentest4j-java libopentest4j-reporting-java libpcsclite1 libpicocli-java libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java librelaxng-datatype-java librhino-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsnpeff-java libsqlite3-0 libstax-ex-java libstreambuffer-java libstringtemplate4-java libtreelayout-java libtrove3-java libtxw2-java libunivocity-parsers-java libvecmath-java libwagon-http-java libwagon-provider-api-java libxbean-reflect-java libxerces2-java libxml-commons-external-java libxml-commons-resolver1.1-java libxsom-java libxz-java ncbi-vdb-data openjdk-21-jre-headless Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsnpsift-java 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 418 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9964 files and directories currently installed.) Removing libsnpsift-java (5.2.e+dfsg-1) ... 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'remove', 'libsnpsift-java'] 0m32.1s INFO: Reinstalling after remove 0m32.1s INFO: Running scripts pre_install 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_database-server'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_database-server'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_exceptions'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_exceptions'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_extras'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_extras'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy'] 0m32.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy', 'libsnpsift-java'] 0m32.2s DUMP: libsnpsift-java: Installed: (none) Candidate: 5.2.e+dfsg-1 Version table: 5.2.e+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy', 'libsnpsift-java'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', 'install', 'libsnpsift-java=5.2.e+dfsg-1'] 0m33.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libsnpsift-java debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/371 kB of archives. After this operation, 418 kB of additional disk space will be used. Selecting previously unselected package libsnpsift-java. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9951 files and directories currently installed.) Preparing to unpack .../libsnpsift-java_5.2.e+dfsg-1_all.deb ... Unpacking libsnpsift-java (5.2.e+dfsg-1) ... Setting up libsnpsift-java (5.2.e+dfsg-1) ... 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', 'install', 'libsnpsift-java=5.2.e+dfsg-1'] 0m33.2s INFO: Running scripts post_install 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_install_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_install_exceptions'] 0m33.2s INFO: Running scripts pre_install 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_database-server'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_database-server'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_exceptions'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_extras'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_extras'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy'] 0m33.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy', 'libsnpsift-java'] 0m33.4s DUMP: libsnpsift-java: Installed: 5.2.e+dfsg-1 Candidate: 5.2.e+dfsg-1 Version table: *** 5.2.e+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-cache', 'policy', 'libsnpsift-java'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', 'install', '--reinstall', 'libsnpsift-java=5.2.e+dfsg-1'] 0m34.3s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/371 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9964 files and directories currently installed.) Preparing to unpack .../libsnpsift-java_5.2.e+dfsg-1_all.deb ... Unpacking libsnpsift-java (5.2.e+dfsg-1) over (5.2.e+dfsg-1) ... Setting up libsnpsift-java (5.2.e+dfsg-1) ... 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', '-y', 'install', '--reinstall', 'libsnpsift-java=5.2.e+dfsg-1'] 0m34.3s INFO: Running scripts post_install 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_install_exceptions'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_install_exceptions'] 0m34.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m34.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m35.6s DEBUG: No broken symlinks as far as we can find. 0m36.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmped12r8hg', '-ac', '--ignore-obsolete'] 0m37.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmped12r8hg', '-ac', '--ignore-obsolete'] 0m37.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.6s DUMP: 0.15.6 0m37.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.6s INFO: Running adequate version 0.15.6 now. 0m37.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'libsnpsift-java'] 0m37.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'libsnpsift-java'] 0m37.7s INFO: Running scripts pre_remove 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_exceptions'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_exceptions'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.7s DUMP: install ok installed ant ant 1.10.15-1 install ok installed ant-optional ant-optional 1.10.15-1 install ok installed antlr4 antlr4 4.9.2-2 install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed ca-certificates ca-certificates 20240203 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed default-jre-headless default-jre-headless 2:1.21-76 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed java-common java-common 0.76 install ok installed junit4 junit4 4.13.2-4 install ok installed junit5 junit5 5.10.3-1 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libactivation-java libactivation-java 1.2.0-2 install ok installed libantlr3-runtime-java libantlr3-runtime-java 3.5.3-2 install ok installed libantlr4-runtime-java libantlr4-runtime-java 4.9.2-2 install ok installed libaopalliance-java libaopalliance-java 20070526-7 install ok installed libapache-pom-java libapache-pom-java 29-2 install ok installed libapfloat-java libapfloat-java 1.13.0-1 install ok installed libapiguardian-java libapiguardian-java 1.1.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libargs4j-java libargs4j-java 2.33-2 install ok installed libasm-java libasm-java 9.7-2 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libbiojava6-java libbiojava6-java 6.1.0+dfsg-4 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcdi-api-java libcdi-api-java 1.2-3 install ok installed libcharts4j-java libcharts4j-java 1.3-4 install ok installed libciftools-java libciftools-java 6.0.0-1 install ok installed libcodemodel-java libcodemodel-java 2.6+jaxb2.3.0.1-10.1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcommons-cli-java libcommons-cli-java 1.6.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.16.0-1 install ok installed libcommons-compress-java libcommons-compress-java 1.25.0-1 install ok installed libcommons-exec-java libcommons-exec-java 1.3-2 install ok installed libcommons-io-java libcommons-io-java 2.16.1-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang-java libcommons-lang-java 2.6-10 install ok installed libcommons-lang3-java libcommons-lang3-java 3.14.0-1 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-math-java libcommons-math-java 2.2-8 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-3 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcommons-text-java libcommons-text-java 1.11.0-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libdistlib-java libdistlib-java 1.0-5 install ok installed libdom4j-java libdom4j-java 2.1.4-1 install ok installed libdtd-parser-java libdtd-parser-java 1.2-1 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libexec-maven-plugin-java libexec-maven-plugin-java 3.1.0-2 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libfastinfoset-java libfastinfoset-java 1.2.12-3 install ok installed libfastutil-java libfastutil-java 8.5.14+dfsg-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfreemarker-java libfreemarker-java 2.3.32-2 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.3-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgoogle-gson-java libgoogle-gson-java 2.10.1-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libguice-java libguice-java 4.2.3-2 install ok installed libhamcrest-java libhamcrest-java 2.2-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.0+dfsg-2 install ok installed libhttpclient-java libhttpclient-java 4.5.14-1 install ok installed libhttpcore-java libhttpcore-java 4.4.16-1 install ok installed libicu4j-java libicu4j-java 73.2-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libinchi1.07 libinchi1.07 1.07.1+dfsg-4 install ok installed libistack-commons-java libistack-commons-java 3.0.6-5 install ok installed libitext5-java libitext5-java 5.5.13.3-4 install ok installed libjackson2-annotations-java libjackson2-annotations-java 2.14.0-1 install ok installed libjackson2-core-java libjackson2-core-java 2.14.1-1 install ok installed libjackson2-databind-java libjackson2-databind-java 2.14.0-1 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-10.1 install ok installed libjaxen-java libjaxen-java 1.1.6-4 install ok installed libjgrapht-java libjgrapht-java 1.5.2-1 install ok installed libjgraphx-java libjgraphx-java 2.1.0.7-4 install ok installed libjheaps-java libjheaps-java 0.14-2 install ok installed libjmol-java libjmol-java 16.2.15+dfsg-1 install ok installed libjni-inchi-java libjni-inchi-java 0.8+dfsg-8 install ok installed libjni-inchi-jni libjni-inchi-jni 0.8+dfsg-8 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3 install ok installed libjson-simple-java libjson-simple-java 2.3.0-1 install ok installed libjsonp-java libjsonp-java 1.1.2-4 install ok installed libjsoup-java libjsoup-java 1.15.3-1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmaven-archiver-java libmaven-archiver-java 3.6.0-1 install ok installed libmaven-compiler-plugin-java libmaven-compiler-plugin-java 3.10.1-2 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-1 install ok installed libmaven-jar-plugin-java libmaven-jar-plugin-java 3.3.0-2 install ok installed libmaven-parent-java libmaven-parent-java 35-1 install ok installed libmaven-resolver-java libmaven-resolver-java 1.6.3-1 install ok installed libmaven-shared-incremental-java libmaven-shared-incremental-java 1.1-6 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-4 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.3.4-1 install ok installed libmaven3-core-java libmaven3-core-java 3.8.8-1 install ok installed libmbedcrypto7t64:amd64 libmbedcrypto7t64 2.28.8-1 install ok installed libmbedtls14t64:amd64 libmbedtls14t64 2.28.8-1 install ok installed libmbedx509-1t64:amd64 libmbedx509-1t64 2.28.8-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmjson-java libmjson-java 1.4.0-3 install ok installed libmmtf-java libmmtf-java 1.0.11-1 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libmsgpack-java libmsgpack-java 0.9.6-1 install ok installed libnaga-java libnaga-java 3.0+svn80-5 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.3+dfsg-9 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.2+dfsg-2+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libngs-java:amd64 libngs-java 3.0.3+dfsg-9 install ok installed libngs-jni:amd64 libngs-jni 3.0.3+dfsg-9 install ok installed libnspr4:amd64 libnspr4 2:4.35-1.1+b1 install ok installed libnss3:amd64 libnss3 2:3.105-2 install ok installed libopentest4j-java libopentest4j-java 1.2.0-4 install ok installed libopentest4j-reporting-java libopentest4j-reporting-java 0.1.0-M1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcsclite1:amd64 libpcsclite1 2.3.0-1 install ok installed libpicocli-java libpicocli-java 4.6.2-2 install ok installed libplexus-archiver-java libplexus-archiver-java 4.6.1-1 install ok installed libplexus-cipher-java libplexus-cipher-java 2.0-1 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.7.0-1 install ok installed libplexus-compiler-java libplexus-compiler-java 2.12.1-3 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 2.1.1-1 install ok installed libplexus-container-default-java libplexus-container-default-java 2.1.1-1 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.26-1 install ok installed libplexus-io-java libplexus-io-java 3.3.1-2 install ok installed libplexus-languages-java libplexus-languages-java 1.1.1-2 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 2.0-3 install ok installed libplexus-utils2-java libplexus-utils2-java 3.4.2-1 install ok installed libqdox2-java libqdox2-java 2.0.3-1 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3.1 install ok installed librhino-java librhino-java 1.7.14-2.1 install ok installed librngom-java librngom-java 2.3.0.1-10.1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsisu-inject-java libsisu-inject-java 0.3.4-2 install ok installed libsisu-plexus-java libsisu-plexus-java 0.3.4-3 install ok installed libslf4j-java libslf4j-java 1.7.32-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libsnappy-java libsnappy-java 1.1.10.5-2 install ok installed libsnappy-jni libsnappy-jni 1.1.10.5-2 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.1-1 install ok installed libsnpeff-java libsnpeff-java 5.2.e+dfsg-1 install ok installed libsnpsift-java libsnpsift-java 5.2.e+dfsg-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1.1 install ok installed libstringtemplate4-java libstringtemplate4-java 4.3.3-1 install ok installed libsystemd0:amd64 libsystemd0 256.6-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libtreelayout-java libtreelayout-java 1.0.3-2 install ok installed libtrove3-java libtrove3-java 3.0.3-5 install ok installed libtxw2-java libtxw2-java 2.3.0.1-10.1 install ok installed libudev1:amd64 libudev1 256.6-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libunivocity-parsers-java libunivocity-parsers-java 2.9.1-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libvecmath-java libvecmath-java 1.5.2-7 install ok installed libwagon-http-java libwagon-http-java 3.5.3-1 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.5.3-1 install ok installed libxbean-reflect-java libxbean-reflect-java 4.5-8 install ok installed libxerces2-java libxerces2-java 2.12.2-1 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-6 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxsom-java libxsom-java 2.3.0.1-10.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libxz-java libxz-java 1.9-1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.2+dfsg-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openjdk-21-jre-headless:amd64 openjdk-21-jre-headless 21.0.5~8ea-1 install ok installed openssl openssl 3.3.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-2 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'remove', 'ant', 'ant-optional', 'antlr4', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr3-runtime-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libargs4j-java', 'libasm-java', 'libatinject-jsr330-api-java', 'libbiojava6-java', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libdistlib-java', 'libdom4j-java', 'libdtd-parser-java', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libfastinfoset-java', 'libfastutil-java', 'libfreemarker-java', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgoogle-gson-java', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu4j-java', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-simple-java', 'libjsonp-java', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libpcsclite1:amd64', 'libpicocli-java', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libstringtemplate4-java', 'libtreelayout-java', 'libtrove3-java', 'libtxw2-java', 'libunivocity-parsers-java', 'libvecmath-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libxbean-reflect-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxsom-java', 'libxz-java', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl', 'libsnpsift-java'] 0m40.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ant ant-optional antlr4 ca-certificates ca-certificates-java default-jre-headless java-common junit4 junit5 libactivation-java libantlr3-runtime-java libantlr4-runtime-java libaopalliance-java libapache-pom-java libapfloat-java libapiguardian-java libargs4j-java libasm-java libatinject-jsr330-api-java libbiojava6-java libcdi-api-java libcharts4j-java libciftools-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-exec-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-math-java libcommons-math3-java libcommons-parent-java libcommons-text-java libdistlib-java libdom4j-java libdtd-parser-java liberror-prone-java libexec-maven-plugin-java libfastinfoset-java libfastutil-java libfreemarker-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgoogle-gson-java libguava-java libguice-java libhamcrest-java libhtsjdk-java libhttpclient-java libhttpcore-java libicu4j-java libinchi1.07 libistack-commons-java libitext5-java libjackson2-annotations-java libjackson2-core-java libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java libjgrapht-java libjgraphx-java libjheaps-java libjmol-java libjni-inchi-java libjni-inchi-jni libjpeg62-turbo libjson-simple-java libjsonp-java libjsoup-java libjsr305-java liblcms2-2 liblog4j1.2-java libmaven-archiver-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java libmaven-resolver-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmjson-java libmmtf-java libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libnspr4 libnss3 libopentest4j-java libopentest4j-reporting-java libpcsclite1 libpicocli-java libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libqdox2-java librelaxng-datatype-java librhino-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsnpeff-java libsnpsift-java libsqlite3-0 libstax-ex-java libstreambuffer-java libstringtemplate4-java libtreelayout-java libtrove3-java libtxw2-java libunivocity-parsers-java libvecmath-java libwagon-http-java libwagon-provider-api-java libxbean-reflect-java libxerces2-java libxml-commons-external-java libxml-commons-resolver1.1-java libxsom-java libxz-java ncbi-vdb-data openjdk-21-jre-headless openssl 0 upgraded, 0 newly installed, 147 to remove and 0 not upgraded. After this operation, 365 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9964 files and directories currently installed.) Removing libsnpsift-java (5.2.e+dfsg-1) ... Removing libsnpeff-java (5.2.e+dfsg-1) ... Removing libbiojava6-java (6.1.0+dfsg-4) ... Removing libjaxb-java (2.3.0.1-10.1) ... Removing libtxw2-java (2.3.0.1-10.1) ... Removing antlr4 (4.9.2-2) ... Removing junit5 (5.10.3-1) ... Removing junit4 (4.13.2-4) ... Removing default-jre-headless (2:1.21-76) ... Removing libfastinfoset-java (1.2.12-3) ... Removing libstreambuffer-java (1.5.4-1.1) ... Removing libstax-ex-java (1.7.8-3) ... Removing libjaxb-api-java (2.3.1-1) ... Removing libstringtemplate4-java (4.3.3-1) ... Removing libantlr3-runtime-java (3.5.3-2) ... Removing libjgrapht-java (1.5.2-1) ... Removing libantlr4-runtime-java (4.9.2-2) ... Removing libmmtf-java (1.0.11-1) ... Removing libmsgpack-java (0.9.6-1) ... Removing libjmol-java (16.2.15+dfsg-1) ... Removing libjni-inchi-java (0.8+dfsg-8) ... Removing libmaven-compiler-plugin-java (3.10.1-2) ... Removing libplexus-compiler-java (2.12.1-3) ... Removing libcommons-text-java (1.11.0-1) ... Removing libmaven-jar-plugin-java (3.3.0-2) ... Removing libdistlib-java (1.0-5) ... Removing libapfloat-java (1.13.0-1) ... Removing libapiguardian-java (1.1.2-1) ... Removing libplexus-languages-java (1.1.1-2) ... Removing libasm-java (9.7-2) ... Removing libcharts4j-java (1.3-4) ... Removing libciftools-java (6.0.0-1) ... Removing libmaven-archiver-java (3.6.0-1) ... Removing libhtsjdk-java (4.1.0+dfsg-2) ... Removing libexec-maven-plugin-java (3.1.0-2) ... Removing libcommons-exec-java (1.3-2) ... Removing libmaven-shared-incremental-java (1.1-6) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing libcommons-lang-java (2.6-10) ... Removing libcommons-math-java (2.2-8) ... Removing libcommons-math3-java (3.6.1-3) ... Removing libdtd-parser-java (1.2-1) ... Removing libplexus-container-default-java (2.1.1-1) ... Removing libfastutil-java (8.5.14+dfsg-1) ... Removing libfreemarker-java (2.3.32-2) ... Removing libgoogle-gson-java (2.10.1-1) ... Removing libhamcrest-java (2.2-2) ... Removing libicu4j-java (73.2-1) ... Removing libjni-inchi-jni (0.8+dfsg-8) ... Removing libinchi1.07 (1.07.1+dfsg-4) ... Removing libitext5-java (5.5.13.3-4) ... Removing libjackson2-databind-java (2.14.0-1) ... Removing libjackson2-annotations-java (2.14.0-1) ... Removing libjackson2-core-java (2.14.1-1) ... Removing libjgraphx-java (2.1.0.7-4) ... Removing libjheaps-java (0.14-2) ... Removing libjson-simple-java (2.3.0-1) ... Removing libjsonp-java (1.1.2-4) ... Removing liblog4j1.2-java (1.2.17-11) ... Removing libngs-java:amd64 (3.0.3+dfsg-9) ... Removing libngs-jni:amd64 (3.0.3+dfsg-9) ... Removing libncbi-ngs3:amd64 (3.0.3+dfsg-9) ... Removing libncbi-vdb3:amd64 (3.0.2+dfsg-2+b1) ... Removing libmbedtls14t64:amd64 (2.28.8-1) ... Removing libmbedx509-1t64:amd64 (2.28.8-1) ... Removing libmbedcrypto7t64:amd64 (2.28.8-1) ... Removing libmjson-java (1.4.0-3) ... Removing libnaga-java (3.0+svn80-5) ... Removing libopentest4j-java (1.2.0-4) ... Removing libopentest4j-reporting-java (0.1.0-M1-2) ... Removing libpicocli-java (4.6.2-2) ... Removing libqdox2-java (2.0.3-1) ... Removing libxsom-java (2.3.0.1-10.1) ... Removing librngom-java (2.3.0.1-10.1) ... Removing librelaxng-datatype-java (1.0+ds1-3.1) ... Removing librhino-java (1.7.14-2.1) ... Removing libtreelayout-java (1.0.3-2) ... Removing libtrove3-java (3.0.3-5) ... Removing libunivocity-parsers-java (2.9.1-1) ... Removing libvecmath-java (1.5.2-7) ... Removing libxbean-reflect-java (4.5-8) ... Removing libxerces2-java (2.12.2-1) ... Removing libxml-commons-external-java (1.4.01-6) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing ncbi-vdb-data (3.0.2+dfsg-2) ... Removing libistack-commons-java (3.0.6-5) ... Removing ant-optional (1.10.15-1) ... Removing ant (1.10.15-1) ... Removing openjdk-21-jre-headless:amd64 (21.0.5~8ea-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing java-common (0.76) ... Removing libactivation-java (1.2.0-2) ... Removing libmaven-file-management-java (3.0.0-1) ... Removing libmaven-shared-io-java (3.0.0-4) ... Removing libmaven3-core-java (3.8.8-1) ... Removing libguice-java (4.2.3-2) ... Removing libaopalliance-java (20070526-7) ... Removing libmaven-parent-java (35-1) ... Removing libargs4j-java (2.33-2) ... Removing libplexus-sec-dispatcher-java (2.0-3) ... Removing libplexus-cipher-java (2.0-1) ... Removing libsisu-plexus-java (0.3.4-3) ... Removing libsisu-inject-java (0.3.4-2) ... Removing libcdi-api-java (1.2-3) ... Removing libcommons-cli-java (1.6.0-1) ... Removing libwagon-http-java (3.5.3-1) ... Removing libhttpclient-java (4.5.14-1) ... Removing libcommons-codec-java (1.16.0-1) ... Removing libplexus-archiver-java (4.6.1-1) ... Removing libcommons-compress-java (1.25.0-1) ... Removing libplexus-io-java (3.3.1-2) ... Removing libmaven-shared-utils-java (3.3.4-1) ... Removing libcommons-io-java (2.16.1-1) ... Removing libmaven-resolver-java (1.6.3-1) ... Removing libcommons-lang3-java (3.14.0-1) ... Removing libdom4j-java (2.1.4-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libguava-java (32.0.1-1) ... Removing libgeronimo-annotation-1.3-spec-java (1.3-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Removing libhttpcore-java (4.4.16-1) ... Removing libjaxen-java (1.1.6-4) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3) ... Removing libjsoup-java (1.15.3-1) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libnss3:amd64 (2:3.105-2) ... Removing libnspr4:amd64 (2:4.35-1.1+b1) ... Removing libpcsclite1:amd64 (2.3.0-1) ... Removing libplexus-classworlds-java (2.7.0-1) ... Removing libplexus-component-annotations-java (2.1.1-1) ... Removing libplexus-interpolation-java (1.26-1) ... Removing libwagon-provider-api-java (3.5.3-1) ... Removing libplexus-utils2-java (3.4.2-1) ... Removing libslf4j-java (1.7.32-1) ... Removing libsnappy-java (1.1.10.5-2) ... Removing libsnappy-jni (1.1.10.5-2) ... Removing libsnappy1v5:amd64 (1.2.1-1) ... Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing libxz-java (1.9-1) ... Removing openssl (3.3.2-1) ... Removing libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... Removing libcommons-logging-java (1.3.0-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (29-2) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Processing triggers for libc-bin (2.40-3) ... 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'remove', 'ant', 'ant-optional', 'antlr4', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr3-runtime-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libargs4j-java', 'libasm-java', 'libatinject-jsr330-api-java', 'libbiojava6-java', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libdistlib-java', 'libdom4j-java', 'libdtd-parser-java', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libfastinfoset-java', 'libfastutil-java', 'libfreemarker-java', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgoogle-gson-java', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu4j-java', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-simple-java', 'libjsonp-java', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libpcsclite1:amd64', 'libpicocli-java', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libstringtemplate4-java', 'libtreelayout-java', 'libtrove3-java', 'libtxw2-java', 'libunivocity-parsers-java', 'libvecmath-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libxbean-reflect-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxsom-java', 'libxz-java', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl', 'libsnpsift-java'] 0m40.0s INFO: Running scripts post_remove 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_remove_cleanup'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_remove_cleanup'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_remove_exceptions'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_remove_exceptions'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', 'ant', 'ant-optional', 'antlr4', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr3-runtime-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libargs4j-java', 'libasm-java', 'libatinject-jsr330-api-java', 'libbiojava6-java', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libdistlib-java', 'libdom4j-java', 'libdtd-parser-java', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libfastinfoset-java', 'libfastutil-java', 'libfreemarker-java', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgoogle-gson-java', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu4j-java', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-simple-java', 'libjsonp-java', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libpcsclite1:amd64', 'libpicocli-java', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libstringtemplate4-java', 'libtreelayout-java', 'libtrove3-java', 'libtxw2-java', 'libunivocity-parsers-java', 'libvecmath-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libxbean-reflect-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxsom-java', 'libxz-java', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl'] 0m40.3s DUMP: dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove antlr4 which isn't installed (Reading database ... 5535 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for java-common (0.76) ... dpkg: warning: ignoring request to remove junit4 which isn't installed dpkg: warning: ignoring request to remove junit5 which isn't installed dpkg: warning: ignoring request to remove libactivation-java which isn't installed dpkg: warning: ignoring request to remove libantlr3-runtime-java which isn't installed dpkg: warning: ignoring request to remove libantlr4-runtime-java which isn't installed dpkg: warning: ignoring request to remove libaopalliance-java which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libapfloat-java which isn't installed dpkg: warning: ignoring request to remove libapiguardian-java which isn't installed dpkg: warning: ignoring request to remove libargs4j-java which isn't installed dpkg: warning: ignoring request to remove libasm-java which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libbiojava6-java which isn't installed dpkg: warning: ignoring request to remove libcdi-api-java which isn't installed dpkg: warning: ignoring request to remove libcharts4j-java which isn't installed dpkg: warning: ignoring request to remove libciftools-java which isn't installed dpkg: warning: ignoring request to remove libcodemodel-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-exec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcommons-text-java which isn't installed dpkg: warning: ignoring request to remove libdistlib-java which isn't installed dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libdtd-parser-java which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libexec-maven-plugin-java which isn't installed dpkg: warning: ignoring request to remove libfastinfoset-java which isn't installed dpkg: warning: ignoring request to remove libfastutil-java which isn't installed dpkg: warning: ignoring request to remove libfreemarker-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-annotation-1.3-spec-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-interceptor-3.0-spec-java which isn't installed dpkg: warning: ignoring request to remove libgoogle-gson-java which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libguice-java which isn't installed dpkg: warning: ignoring request to remove libhamcrest-java which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libicu4j-java which isn't installed dpkg: warning: ignoring request to remove libinchi1.07 which isn't installed dpkg: warning: ignoring request to remove libistack-commons-java which isn't installed dpkg: warning: ignoring request to remove libitext5-java which isn't installed dpkg: warning: ignoring request to remove libjackson2-annotations-java which isn't installed dpkg: warning: ignoring request to remove libjackson2-core-java which isn't installed dpkg: warning: ignoring request to remove libjackson2-databind-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-api-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-java which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjgrapht-java which isn't installed dpkg: warning: ignoring request to remove libjgraphx-java which isn't installed dpkg: warning: ignoring request to remove libjheaps-java which isn't installed dpkg: warning: ignoring request to remove libjmol-java which isn't installed dpkg: warning: ignoring request to remove libjni-inchi-java which isn't installed dpkg: warning: ignoring request to remove libjni-inchi-jni which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjson-simple-java which isn't installed dpkg: warning: ignoring request to remove libjsonp-java which isn't installed dpkg: warning: ignoring request to remove libjsoup-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed dpkg: warning: ignoring request to remove libmaven-archiver-java which isn't installed dpkg: warning: ignoring request to remove libmaven-compiler-plugin-java which isn't installed dpkg: warning: ignoring request to remove libmaven-file-management-java which isn't installed dpkg: warning: ignoring request to remove libmaven-jar-plugin-java which isn't installed dpkg: warning: ignoring request to remove libmaven-parent-java which isn't installed dpkg: warning: ignoring request to remove libmaven-resolver-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-incremental-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-io-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-utils-java which isn't installed dpkg: warning: ignoring request to remove libmaven3-core-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7t64 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14t64 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1t64 which isn't installed dpkg: warning: ignoring request to remove libmjson-java which isn't installed dpkg: warning: ignoring request to remove libmmtf-java which isn't installed dpkg: warning: ignoring request to remove libmsgpack-java which isn't installed dpkg: warning: ignoring request to remove libnaga-java which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libopentest4j-java which isn't installed dpkg: warning: ignoring request to remove libopentest4j-reporting-java which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libpicocli-java which isn't installed dpkg: warning: ignoring request to remove libplexus-archiver-java which isn't installed dpkg: warning: ignoring request to remove libplexus-cipher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-classworlds-java which isn't installed dpkg: warning: ignoring request to remove libplexus-compiler-java which isn't installed dpkg: warning: ignoring request to remove libplexus-component-annotations-java which isn't installed dpkg: warning: ignoring request to remove libplexus-container-default-java which isn't installed dpkg: warning: ignoring request to remove libplexus-interpolation-java which isn't installed dpkg: warning: ignoring request to remove libplexus-io-java which isn't installed dpkg: warning: ignoring request to remove libplexus-languages-java which isn't installed dpkg: warning: ignoring request to remove libplexus-sec-dispatcher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-utils2-java which isn't installed dpkg: warning: ignoring request to remove libqdox2-java which isn't installed dpkg: warning: ignoring request to remove librelaxng-datatype-java which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librngom-java which isn't installed dpkg: warning: ignoring request to remove libsisu-inject-java which isn't installed dpkg: warning: ignoring request to remove libsisu-plexus-java which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed Purging configuration files for libsnpeff-java (5.2.e+dfsg-1) ... dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libstax-ex-java which isn't installed dpkg: warning: ignoring request to remove libstreambuffer-java which isn't installed dpkg: warning: ignoring request to remove libstringtemplate4-java which isn't installed dpkg: warning: ignoring request to remove libtreelayout-java which isn't installed dpkg: warning: ignoring request to remove libtrove3-java which isn't installed dpkg: warning: ignoring request to remove libtxw2-java which isn't installed dpkg: warning: ignoring request to remove libunivocity-parsers-java which isn't installed dpkg: warning: ignoring request to remove libvecmath-java which isn't installed dpkg: warning: ignoring request to remove libwagon-http-java which isn't installed dpkg: warning: ignoring request to remove libwagon-provider-api-java which isn't installed dpkg: warning: ignoring request to remove libxbean-reflect-java which isn't installed dpkg: warning: ignoring request to remove libxerces2-java which isn't installed dpkg: warning: ignoring request to remove libxml-commons-external-java which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ... dpkg: warning: ignoring request to remove libxsom-java which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed Purging configuration files for openjdk-21-jre-headless:amd64 (21.0.5~8ea-1) ... Purging configuration files for openssl (3.3.2-1) ... 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', 'ant', 'ant-optional', 'antlr4', 'ca-certificates', 'ca-certificates-java', 'default-jre-headless', 'java-common', 'junit4', 'junit5', 'libactivation-java', 'libantlr3-runtime-java', 'libantlr4-runtime-java', 'libaopalliance-java', 'libapache-pom-java', 'libapfloat-java', 'libapiguardian-java', 'libargs4j-java', 'libasm-java', 'libatinject-jsr330-api-java', 'libbiojava6-java', 'libcdi-api-java', 'libcharts4j-java', 'libciftools-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-exec-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcommons-text-java', 'libdistlib-java', 'libdom4j-java', 'libdtd-parser-java', 'liberror-prone-java', 'libexec-maven-plugin-java', 'libfastinfoset-java', 'libfastutil-java', 'libfreemarker-java', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgoogle-gson-java', 'libguava-java', 'libguice-java', 'libhamcrest-java', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu4j-java', 'libinchi1.07', 'libistack-commons-java', 'libitext5-java', 'libjackson2-annotations-java', 'libjackson2-core-java', 'libjackson2-databind-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjgrapht-java', 'libjgraphx-java', 'libjheaps-java', 'libjmol-java', 'libjni-inchi-java', 'libjni-inchi-jni', 'libjpeg62-turbo:amd64', 'libjson-simple-java', 'libjsonp-java', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'liblog4j1.2-java', 'libmaven-archiver-java', 'libmaven-compiler-plugin-java', 'libmaven-file-management-java', 'libmaven-jar-plugin-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-incremental-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto7t64:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-1t64:amd64', 'libmjson-java', 'libmmtf-java', 'libmsgpack-java', 'libnaga-java', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopentest4j-java', 'libopentest4j-reporting-java', 'libpcsclite1:amd64', 'libpicocli-java', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-compiler-java', 'libplexus-component-annotations-java', 'libplexus-container-default-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-languages-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libqdox2-java', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsnpeff-java', 'libsqlite3-0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libstringtemplate4-java', 'libtreelayout-java', 'libtrove3-java', 'libtxw2-java', 'libunivocity-parsers-java', 'libvecmath-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libxbean-reflect-java', 'libxerces2-java', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxsom-java', 'libxz-java', 'ncbi-vdb-data', 'openjdk-21-jre-headless:amd64', 'openssl'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', 'libsnpsift-java'] 0m40.3s DUMP: dpkg: warning: ignoring request to remove libsnpsift-java which isn't installed 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', 'libsnpsift-java'] 0m40.3s INFO: Running scripts post_purge 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_purge_exceptions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_purge_exceptions'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_purge_manual_cleanup'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_purge_manual_cleanup'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', '--pending'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--purge', '--pending'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--remove', '--pending'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg', '--remove', '--pending'] 0m40.4s INFO: Running scripts post_test 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_test_exceptions'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'tmp/scripts/post_test_exceptions'] 0m40.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m40.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m41.3s DEBUG: No broken symlinks as far as we can find. 0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-divert', '--list'] 0m41.3s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'dpkg-divert', '--list'] 0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'clean'] 0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmped12r8hg', 'apt-get', 'clean'] 0m41.3s DEBUG: Recording chroot state 0m41.9s INFO: PASS: Installation and purging test. 0m42.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/shm'] 0m42.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/shm'] 0m42.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/console'] 0m42.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/console'] 0m42.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/ptmx'] 0m42.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/ptmx'] 0m42.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/pts'] 0m42.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/dev/pts'] 0m42.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/proc'] 0m42.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmped12r8hg/proc'] 0m42.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m42.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmped12r8hg'] 0m42.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmped12r8hg 0m42.5s INFO: PASS: All tests. 0m42.5s INFO: piuparts run ends. ret=0 End: 2024-10-07 16:46:03 GMT