Start: 2026-10-30 16:05:47 GMT Package: macs Version: 3.1.0-1 Installed-Size: 19697 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-hmmlearn, python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.16), python3 (>= 3.14~), python3-anndata, python3-numpy, python3-pandas, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.43), zlib1g (>= 1:1.1.4) Description: Model-based Analysis of ChIP-Seq on short reads sequencers Homepage: https://github.com/taoliu/MACS/ Commands: macs3 Description-md5: ea92f8fedfe04d3f07954aa006c99da9 Section: science Priority: optional Filename: pool/main/m/macs/macs_3.1.0-1_amd64.deb Size: 4834852 MD5sum: 197c1b240f2ddb70051647170af0ccea SHA256: 0aee0ef0e2ecd42571de71017b4104b780277967c7fcac9a75e36da4741cc0f5 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt macs=3.1.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291514~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt macs=3.1.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.12.113+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.113-1 (2026-10-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpteqdc5rk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpteqdc5rk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpteqdc5rk/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpteqdc5rk/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'update'] 0m4.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7767 kB] Fetched 18.8 MB in 3s (6708 kB/s) Reading package lists... 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'update'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt coreutils libapt-pkg7.0 libpcre2-8-0 tzdata 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6788 kB of archives. After this operation, 1830 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.12-0.2 [3340 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.3.5 [1292 kB] Get:3 http://deb.debian.org/debian sid/main amd64 apt amd64 3.3.5 [1580 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.49-1 [313 kB] Get:5 http://deb.debian.org/debian sid/main amd64 tzdata all 2026f-1 [263 kB] Preconfiguring packages ... Fetched 6788 kB in 0s (37.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../coreutils_9.12-0.2_amd64.deb ... Unpacking coreutils (9.12-0.2) over (9.10-1) ... Setting up coreutils (9.12-0.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.3.5_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.3.5) over (3.3.4) ... Setting up libapt-pkg7.0:amd64 (3.3.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../archives/apt_3.3.5_amd64.deb ... Unpacking apt (3.3.5) over (3.3.4) ... Setting up apt (3.3.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.49-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.49-1) over (10.48-3.1) ... Setting up libpcre2-8-0:amd64 (10.49-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../tzdata_2026f-1_all.deb ... Unpacking tzdata (2026f-1) over (2026e-1) ... Setting up tzdata (2026f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 30 16:05:53 UTC 2026. Universal Time is now: Fri Oct 30 16:05:53 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.43-7) ... Processing triggers for libselinux1:amd64 (3.11-2.1+b1) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-yf', 'dist-upgrade'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.9s DUMP: 87c0e739975ec2ccf51054162cf41787 - 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.9s INFO: Running scripts post_setup 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_fake-essential'] 0m10.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69+nmu3). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mariadb | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1917 kB of archives. After this operation, 5465 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.1.0 [627 kB] Preconfiguring packages ... Fetched 1917 kB in 0s (13.9 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4947 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.1.0_all.deb ... Unpacking dbconfig-common (2.1.0) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.7-1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.7-1) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.1.0) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.43-7) ... 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_fake-essential'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_forbid_home'] 0m10.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_forbid_home'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_minimize'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_minimize'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_zz_backports'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_setup_zz_backports'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'clean'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'clean'] 0m10.4s DEBUG: Recording chroot state 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.1s DUMP: install ok installed apt apt 3.3.5 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.12-0.2 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-4 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.5 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 262.1-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-divert', '--list'] 0m11.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-divert', '--list'] 0m11.1s INFO: Running scripts is_testable 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/is_testable_uninstallable'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/is_testable_uninstallable'] 0m11.1s INFO: apt-cache does not know about any of the requested packages 0m11.1s INFO: Running scripts pre_test 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_test_root_password'] 0m11.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_test_root_password'] 0m11.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 0m11.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 0m11.9s DEBUG: No broken symlinks as far as we can find. 0m11.9s INFO: Running scripts pre_install 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_database-server'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_database-server'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_exceptions'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_exceptions'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_extras'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_extras'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'show', '--no-all-versions', 'macs=3.1.0-1'] 0m13.0s DUMP: Package: macs Version: 3.1.0-1 Installed-Size: 19697 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-hmmlearn, python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.16), python3 (>= 3.14~), python3-anndata, python3-numpy, python3-pandas, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.43), zlib1g (>= 1:1.1.4) Description-en: Model-based Analysis of ChIP-Seq on short reads sequencers MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples. Description-md5: ea92f8fedfe04d3f07954aa006c99da9 Homepage: https://github.com/taoliu/MACS/ Commands: macs3 Section: science Priority: optional Filename: pool/main/m/macs/macs_3.1.0-1_amd64.deb Size: 4834852 MD5sum: 197c1b240f2ddb70051647170af0ccea SHA256: 0aee0ef0e2ecd42571de71017b4104b780277967c7fcac9a75e36da4741cc0f5 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'show', '--no-all-versions', 'macs=3.1.0-1'] 0m13.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: python3-hmmlearn, python3-numpy2-abi0 | python3-numpy-abi9, python3 (<< 3.16), python3 (>= 3.14~), python3-anndata, python3-numpy, python3-pandas, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.43), zlib1g (>= 1:1.1.4) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m13.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpek8u9wsk/piuparts-depends-dummy'] 0m13.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpek8u9wsk/piuparts-depends-dummy.deb'. 0m13.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpek8u9wsk/piuparts-depends-dummy'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m13.0s DUMP: 3.3.5 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m13.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpek8u9wsk/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpteqdc5rk/tmp 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m58.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates docutils-common libblas3 libblosc1 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libhdf5-320 libhdf5-hl-320 libjs-sphinxdoc libjson-perl liblapack3 liblzf1 libperl5.42 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.42 python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-anndata python3-annotated-types python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-dnspython python3-docutils python3-donfig python3-dotenv python3-email-validator python3-h5py python3-h5py-serial python3-hmmlearn python3-idna python3-imagesize python3-jinja2 python3-joblib python3-legacy-api-wrap python3-markupsafe python3-minimal python3-msgspec python3-narwhals python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydantic python3-pydantic-core python3-pydantic-settings python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-scverse-misc-settings python3-sklearn python3-sklearn-lib python3-snowballstemmer python3-soupsieve python3-sphinx python3-threadpoolctl python3-typing-extensions python3-typing-inspection python3-urllib3 python3-yaml python3-zarr python3.14 python3.14-minimal readline-common sgml-base sphinx-common xml-core Suggested packages: gdbm-l10n perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3-openpyxl python-charset-normalizer-doc python3-aioquic python3-trio docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc python-joblib-doc python-msgspec-doc python3-tomli-w python3-pyarrow python-natsort-doc www-browser gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pygments-doc ttf-bitstream-vera python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-sklearn-doc python3-stemmer dvipng dvisvgm fonts-freefont-otf imagemagick latexmk node-mathjax-full python3-defusedxml python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended texlive-latex-extra texlive-plain-generic python-typing-extensions-doc python3-brotli python3.14-venv python3.14-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: libjson-xs-perl python3-lxml python3-cryptography python3-h2 python3-httpcore python3-httpx libpaper-utils python3-pil python3-psutil python3-pytest python3-msgpack python3-zfpy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-html5lib python3-tables python3-numba g++ | c++-compiler python3-pooch make python3-aiohttp python3-botocore python3-fsspec python3-typer The following NEW packages will be installed: ca-certificates docutils-common libblas3 libblosc1 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libhdf5-320 libhdf5-hl-320 libjs-sphinxdoc libjson-perl liblapack3 liblzf1 libperl5.42 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.42 piuparts-depends-dummy python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-anndata python3-annotated-types python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-dnspython python3-docutils python3-donfig python3-dotenv python3-email-validator python3-h5py python3-h5py-serial python3-hmmlearn python3-idna python3-imagesize python3-jinja2 python3-joblib python3-legacy-api-wrap python3-markupsafe python3-minimal python3-msgspec python3-narwhals python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydantic python3-pydantic-core python3-pydantic-settings python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-scverse-misc-settings python3-sklearn python3-sklearn-lib python3-snowballstemmer python3-soupsieve python3-sphinx python3-threadpoolctl python3-typing-extensions python3-typing-inspection python3-urllib3 python3-yaml python3-zarr python3.14 python3.14-minimal readline-common sgml-base sphinx-common xml-core 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 85.1 MB/85.1 MB of archives. After this operation, 505 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [732 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.10-1 [905 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.10-1 [2734 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.8-1 [25.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.6 [10.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.10-1 [2360 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.10-1 [884 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.8-1 [8520 B] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.8-1 [26.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-5+b1 [137 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-4 [877 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.4.6+ds-5+b1 [7252 kB] Get:21 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:22 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260816+nmu1 [134 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:27 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.3-1 [266 kB] Get:28 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:29 http://deb.debian.org/debian sid/main amd64 xml-core all 0.21 [19.0 kB] Get:30 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.23+dfsg-2 [124 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.3.1-4 [32.2 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-4 [151 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libhdf5-320 amd64 2.2.0+repack-6 [2175 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-6 [82.3 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 9.2.0-1 [46.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:39 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b4 [10.1 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:42 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 7.3.1+ds1-1 [2654 kB] Get:43 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.18.0+git2026-08-12-3 [6375 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:45 http://deb.debian.org/debian sid/main amd64 python3-accessible-pygments all 0.0.5-2 [1306 kB] Get:46 http://deb.debian.org/debian sid/main amd64 python3-alabaster all 1.0.0-2 [20.4 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-scverse-misc all 0.1.6-2 [24.0 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-dotenv all 1.2.1-2 [28.4 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3-dnspython all 2.8.0-7 [175 kB] Get:51 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-email-validator all 2.3.0-1 [33.1 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-annotated-types all 0.8.0-1 [18.7 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-pydantic-core amd64 2.50.1-3 [1685 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-typing-inspection all 0.4.4-1 [14.1 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-pydantic amd64 2.14.1-1 [406 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-pydantic-settings all 2.16.1-1 [89.3 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-scverse-misc-settings all 0.1.6-2 [4532 B] Get:59 http://deb.debian.org/debian sid/main amd64 python3-array-api-compat all 1.11.2-1 [37.8 kB] Get:60 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.16.0-8 [1517 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.16.0-8 [15.1 kB] Get:62 http://deb.debian.org/debian sid/main amd64 python3-legacy-api-wrap all 1.5-1 [6048 B] Get:63 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.4.0-2 [39.0 kB] Get:64 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 3.0.0-2 [92.8 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2026.5-1 [34.5 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-6 [5515 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.3.3+dfsg-6 [2930 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.17.1-5+b2 [17.4 MB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-crc32c amd64 2.7.1-1+b3 [26.4 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.3-1+b2 [161 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-donfig all 0.8.1+dfsg-3 [18.3 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-msgspec amd64 0.22.0-2+b1 [278 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.18.0+git2026-08-12-3 [120 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-soupsieve all 2.8.4-1 [38.7 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-bs4 all 4.15.0-1 [119 kB] Get:78 http://deb.debian.org/debian sid/main amd64 python3-roman-numerals all 4.1.0-1 [9196 B] Get:79 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.23+dfsg-2 [433 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 3.0.3-2+b2 [14.0 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-4 [106 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.10.23+ds-1 [9956 B] Get:83 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.7-2+b3 [224 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:87 http://deb.debian.org/debian sid/main amd64 sphinx-common all 9.2.0-1 [701 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-imagesize all 2.0.1-1 [14.9 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-snowballstemmer all 3.1.1-1 [61.9 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-sphinx all 9.2.0-1 [506 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-pydata-sphinx-theme all 0.23.0+dfsg-1 [847 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-numcodecs amd64 0.17.1+ds-1 [409 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-zarr all 3.4.1-2 [268 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-anndata all 0.13.4-2 [135 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-sklearn-lib amd64 1.9.0+dfsg-2+b1 [3353 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-joblib all 1.5.3-2 [222 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-narwhals all 2.26.0-1 [259 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-threadpoolctl all 3.7.0-2 [37.1 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-sklearn all 1.9.0+dfsg-2 [2729 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-hmmlearn amd64 0.3.3-2 [144 kB] Preconfiguring packages ... Fetched 85.1 MB in 3s (26.3 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5488 files and directories currently installed.) Preparing to unpack .../libexpat1_2.9.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.9.0-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.10-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.10-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../7-libpython3.14-stdlib_3.14.10-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.10-1) ... 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Unpacking python3-markupsafe (3.0.3-2+b2) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../66-python3-jinja2_3.1.6-4_all.deb ... Unpacking python3-jinja2 (3.1.6-4) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../67-python3-certifi_2026.10.23+ds-1_all.deb ... Unpacking python3-certifi (2026.10.23+ds-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../68-python3-charset-normalizer_3.4.7-2+b3_amd64.deb ... Unpacking python3-charset-normalizer (3.4.7-2+b3) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../69-python3-urllib3_2.8.0-2_all.deb ... Unpacking python3-urllib3 (2.8.0-2) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../70-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-requests. 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Selecting previously unselected package python3-numcodecs. Preparing to unpack .../77-python3-numcodecs_0.17.1+ds-1_amd64.deb ... Unpacking python3-numcodecs (0.17.1+ds-1) ... Selecting previously unselected package python3-zarr. Preparing to unpack .../78-python3-zarr_3.4.1-2_all.deb ... Unpacking python3-zarr (3.4.1-2) ... Selecting previously unselected package python3-anndata. Preparing to unpack .../79-python3-anndata_0.13.4-2_all.deb ... Unpacking python3-anndata (0.13.4-2) ... Selecting previously unselected package python3-sklearn-lib:amd64. Preparing to unpack .../80-python3-sklearn-lib_1.9.0+dfsg-2+b1_amd64.deb ... Unpacking python3-sklearn-lib:amd64 (1.9.0+dfsg-2+b1) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../81-python3-joblib_1.5.3-2_all.deb ... Unpacking python3-joblib (1.5.3-2) ... Selecting previously unselected package python3-narwhals. Preparing to unpack .../82-python3-narwhals_2.26.0-1_all.deb ... Unpacking python3-narwhals (2.26.0-1) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../83-python3-threadpoolctl_3.7.0-2_all.deb ... Unpacking python3-threadpoolctl (3.7.0-2) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../84-python3-sklearn_1.9.0+dfsg-2_all.deb ... Unpacking python3-sklearn (1.9.0+dfsg-2) ... Selecting previously unselected package python3-hmmlearn. Preparing to unpack .../85-python3-hmmlearn_0.3.3-2_amd64.deb ... Unpacking python3-hmmlearn (0.3.3-2) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../86-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (14.0.0) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up node-fortawesome-fontawesome-free (7.3.1+ds1-1) ... Setting up libgomp1:amd64 (16.2.0-4) ... Setting up python-babel-localedata (2.18.0+git2026-08-12-3) ... Setting up libsnappy1v5:amd64 (1.3.1-4) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b4) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Setting up libjs-sphinxdoc (9.2.0-1) ... Setting up libgfortran5:amd64 (16.2.0-4) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libblosc1:amd64 (1.21.5+ds-2+b2) ... Setting up netbase (6.6) ... Setting up sgml-base (1.31+nmu1) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up openssl (3.6.5-1) ... Setting up readline-common (8.3-4) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 120 added, 0 removed; done. Setting up perl (5.42.3-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up xml-core (0.21) ... Setting up libjson-perl (4.10000-1) ... Setting up libhdf5-320:amd64 (2.2.0+repack-6) ... Setting up libpython3.14-stdlib:amd64 (3.14.10-1) ... Setting up sphinx-common (9.2.0-1) ... Setting up libhdf5-hl-320:amd64 (2.2.0+repack-6) ... Setting up python3.14 (3.14.10-1) ... Setting up libpython3-stdlib:amd64 (3.14.8-1) ... Setting up python3 (3.14.8-1) ... Setting up python3-legacy-api-wrap (1.5-1) ... Setting up python3-markupsafe (3.0.3-2+b2) ... Setting up python3-annotated-types (0.8.0-1) ... Setting up python3-natsort (8.4.0-2) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-jinja2 (3.1.6-4) ... Setting up python3-pygments (2.20.0+dfsg-2) ... Setting up python3-packaging (26.2-3) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-accessible-pygments (0.0.5-2) ... Setting up python3-certifi (2026.10.23+ds-1) ... Setting up python3-snowballstemmer (3.1.1-1) ... Setting up python3-idna (3.20-1) ... Setting up python3-typing-extensions (4.16.0-5) ... Setting up python3-msgspec (0.22.0-2+b1) ... Setting up python3-numpy (1:2.4.6+ds-5+b1) ... Setting up python3-crc32c (2.7.1-1+b3) ... Setting up python3-urllib3 (2.8.0-2) ... Setting up python3-dnspython (2.8.0-7) ... Setting up python3-roman-numerals (4.1.0-1) ... Setting up python3-dateutil (3.0.0-2) ... Setting up python3-email-validator (2.3.0-1) ... Setting up python3-scverse-misc (0.1.6-2) ... Setting up python3-soupsieve (2.8.4-1) ... Setting up python3-imagesize (2.0.1-1) ... Setting up python3-dotenv (1.2.1-2) ... Setting up python3-scipy (1.17.1-5+b2) ... Setting up python3-pydantic-core (2.50.1-3) ... Setting up python3-typing-inspection (0.4.4-1) ... Setting up python3-joblib (1.5.3-2) ... Setting up python3-babel (2.18.0+git2026-08-12-3) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-charset-normalizer (3.4.7-2+b3) ... Setting up python3-alabaster (1.0.0-2) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Setting up python3-threadpoolctl (3.7.0-2) ... Setting up python3-narwhals (2.26.0-1) ... Setting up python3-sklearn-lib:amd64 (1.9.0+dfsg-2+b1) ... Setting up python3-array-api-compat (1.11.2-1) ... Setting up python3-h5py-serial (3.16.0-8) ... Setting up python3-yaml (6.0.3-1+b2) ... Setting up python3-pytz (2026.5-1) ... Setting up python3-bs4 (4.15.0-1) ... Setting up python3-pandas (2.3.3+dfsg-6) ... Setting up python3-pydantic (2.14.1-1) ... Setting up python3-requests (2.34.2-1) ... Setting up python3-h5py (3.16.0-8) ... Setting up python3-sklearn (1.9.0+dfsg-2) ... Setting up python3-pydantic-settings (2.16.1-1) ... Setting up python3-donfig (0.8.1+dfsg-3) ... Setting up python3-scverse-misc-settings (0.1.6-2) ... Setting up python3-hmmlearn (0.3.3-2) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.23+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.23+dfsg-2) ... Setting up python3-sphinx (9.2.0-1) ... Setting up python3-pydata-sphinx-theme (0.23.0+dfsg-1) ... Setting up python3-numcodecs (0.17.1+ds-1) ... Setting up python3-zarr (3.4.1-2) ... Setting up python3-anndata (0.13.4-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m58.2s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m58.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpteqdc5rk/./tmp/piuparts-depends-dummy.deb 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m58.2s DUMP: piuparts-depends-dummy install ok installed 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m58.2s DUMP: (Reading database ... 25959 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'clean'] 0m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'clean'] 0m58.3s DEBUG: Recording chroot state 0m59.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m1.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m3.4s DEBUG: No broken symlinks as far as we can find. 1m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy'] 1m4.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy', 'macs'] 1m4.3s DUMP: macs: Installed: (none) Candidate: 3.1.0-1 Version table: 3.1.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 3.0.5-1+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy', 'macs'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', 'install', 'macs=3.1.0-1'] 1m6.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: macs 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 4835 kB of archives. After this operation, 20.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 macs amd64 3.1.0-1 [4835 kB] Fetched 4835 kB in 0s (15.0 MB/s) Selecting previously unselected package macs. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25959 files and directories currently installed.) Preparing to unpack .../macs_3.1.0-1_amd64.deb ... Unpacking macs (3.1.0-1) ... Setting up macs (3.1.0-1) ... 1m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', 'install', 'macs=3.1.0-1'] 1m6.2s INFO: Running scripts post_install 1m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_install_exceptions'] 1m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_install_exceptions'] 1m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'systemd-tmpfiles', '--cat-config'] 1m6.3s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m6.3s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'systemd-tmpfiles', '--cat-config'] 1m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'remove', 'macs'] 1m7.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: docutils-common libblas3 libblosc1 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 libhdf5-hl-320 libjs-sphinxdoc libjson-perl liblapack3 liblzf1 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 libyaml-0-2 media-types node-fortawesome-fontawesome-free python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-anndata python3-annotated-types python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-dnspython python3-docutils python3-donfig python3-dotenv python3-email-validator python3-h5py python3-h5py-serial python3-hmmlearn python3-idna python3-imagesize python3-jinja2 python3-joblib python3-legacy-api-wrap python3-markupsafe python3-minimal python3-msgspec python3-narwhals python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydantic python3-pydantic-core python3-pydantic-settings python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-scverse-misc-settings python3-sklearn python3-sklearn-lib python3-snowballstemmer python3-soupsieve python3-sphinx python3-threadpoolctl python3-typing-extensions python3-typing-inspection python3-urllib3 python3-yaml python3-zarr python3.14 python3.14-minimal readline-common sgml-base sphinx-common xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: macs 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 20.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26176 files and directories currently installed.) Removing macs (3.1.0-1) ... 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'remove', 'macs'] 1m7.3s INFO: Reinstalling after remove 1m7.3s INFO: Running scripts pre_install 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_database-server'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_database-server'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_exceptions'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_exceptions'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_extras'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_extras'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy'] 1m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy'] 1m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy', 'macs'] 1m7.4s DUMP: macs: Installed: (none) Candidate: 3.1.0-1 Version table: 3.1.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 3.0.5-1+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy', 'macs'] 1m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', 'install', 'macs=3.1.0-1'] 1m9.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: macs 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/4835 kB of archives. After this operation, 20.2 MB of additional disk space will be used. Selecting previously unselected package macs. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25959 files and directories currently installed.) Preparing to unpack .../macs_3.1.0-1_amd64.deb ... Unpacking macs (3.1.0-1) ... Setting up macs (3.1.0-1) ... 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', 'install', 'macs=3.1.0-1'] 1m9.0s INFO: Running scripts post_install 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_install_exceptions'] 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_install_exceptions'] 1m9.0s INFO: Running scripts pre_install 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_database-server'] 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_database-server'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_exceptions'] 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_exceptions'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_extras'] 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_extras'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture'] 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy'] 1m9.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy'] 1m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy', 'macs'] 1m9.1s DUMP: macs: Installed: 3.1.0-1 Candidate: 3.1.0-1 Version table: *** 3.1.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3.0.5-1+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-cache', 'policy', 'macs'] 1m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', 'install', '--reinstall', 'macs=3.1.0-1'] 1m10.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/4835 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26176 files and directories currently installed.) Preparing to unpack .../macs_3.1.0-1_amd64.deb ... Unpacking macs (3.1.0-1) over (3.1.0-1) ... Setting up macs (3.1.0-1) ... 1m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', '-y', 'install', '--reinstall', 'macs=3.1.0-1'] 1m10.8s INFO: Running scripts post_install 1m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_install_exceptions'] 1m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_install_exceptions'] 1m10.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m12.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m15.0s DEBUG: No broken symlinks as far as we can find. 1m16.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', '-ac', '--ignore-obsolete'] 1m20.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', '-ac', '--ignore-obsolete'] 1m20.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.0s DUMP: 0.17.5+b5 1m20.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.0s INFO: Running adequate version 0.17.5+b5 now. 1m20.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'macs'] 1m20.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'macs'] 1m20.0s INFO: Running scripts pre_remove 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_exceptions'] 1m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_exceptions'] 1m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m21.9s DUMP: install ok installed apt apt 3.3.5 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed ca-certificates ca-certificates 20260816+nmu1 install ok installed coreutils coreutils 9.12-0.2 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed docutils-common docutils-common 0.23+dfsg-2 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-4 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.5 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-4 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-4 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-6 install ok installed libhdf5-hl-320:amd64 libhdf5-hl-320 2.2.0+repack-6 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 9.2.0-1 install ok installed libjson-perl libjson-perl 4.10000-1 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzf1:amd64 liblzf1 3.6-4+b4 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.49-1 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.10-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.10-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b2 install ok installed libselinux1:amd64 libselinux1 3.11-2.1+b1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b2 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.3.1-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 262.1-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed macs macs 3.1.0-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 7.3.1+ds1-1 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed python-babel-localedata python-babel-localedata 2.18.0+git2026-08-12-3 install ok installed python3 python3 3.14.8-1 install ok installed python3-accessible-pygments python3-accessible-pygments 0.0.5-2 install ok installed python3-alabaster python3-alabaster 1.0.0-2 install ok installed python3-anndata python3-anndata 0.13.4-2 install ok installed python3-annotated-types python3-annotated-types 0.8.0-1 install ok installed python3-array-api-compat python3-array-api-compat 1.11.2-1 install ok installed python3-babel python3-babel 2.18.0+git2026-08-12-3 install ok installed python3-bs4 python3-bs4 4.15.0-1 install ok installed python3-certifi python3-certifi 2026.10.23+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2+b3 install ok installed python3-crc32c python3-crc32c 2.7.1-1+b3 install ok installed python3-dateutil python3-dateutil 3.0.0-2 install ok installed python3-decorator python3-decorator 5.3.1-1 install ok installed python3-dnspython python3-dnspython 2.8.0-7 install ok installed python3-docutils python3-docutils 0.23+dfsg-2 install ok installed python3-donfig python3-donfig 0.8.1+dfsg-3 install ok installed python3-dotenv python3-dotenv 1.2.1-2 install ok installed python3-email-validator python3-email-validator 2.3.0-1 install ok installed python3-h5py python3-h5py 3.16.0-8 install ok installed python3-h5py-serial python3-h5py-serial 3.16.0-8 install ok installed python3-hmmlearn python3-hmmlearn 0.3.3-2 install ok installed python3-idna python3-idna 3.20-1 install ok installed python3-imagesize python3-imagesize 2.0.1-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-4 install ok installed python3-joblib python3-joblib 1.5.3-2 install ok installed python3-legacy-api-wrap python3-legacy-api-wrap 1.5-1 install ok installed python3-markupsafe python3-markupsafe 3.0.3-2+b2 install ok installed python3-minimal python3-minimal 3.14.8-1 install ok installed python3-msgspec python3-msgspec 0.22.0-2+b1 install ok installed python3-narwhals python3-narwhals 2.26.0-1 install ok installed python3-natsort python3-natsort 8.4.0-2 install ok installed python3-numcodecs python3-numcodecs 0.17.1+ds-1 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-5+b1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-5+b1 install ok installed python3-packaging python3-packaging 26.2-3 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-6 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-6 install ok installed python3-pydantic python3-pydantic 2.14.1-1 install ok installed python3-pydantic-core python3-pydantic-core 2.50.1-3 install ok installed python3-pydantic-settings python3-pydantic-settings 2.16.1-1 install ok installed python3-pydata-sphinx-theme python3-pydata-sphinx-theme 0.23.0+dfsg-1 install ok installed python3-pygments python3-pygments 2.20.0+dfsg-2 install ok installed python3-pytz python3-pytz 2026.5-1 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-roman-numerals python3-roman-numerals 4.1.0-1 install ok installed python3-scipy python3-scipy 1.17.1-5+b2 install ok installed python3-scverse-misc python3-scverse-misc 0.1.6-2 install ok installed python3-scverse-misc-settings python3-scverse-misc-settings 0.1.6-2 install ok installed python3-sklearn python3-sklearn 1.9.0+dfsg-2 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 1.9.0+dfsg-2+b1 install ok installed python3-snowballstemmer python3-snowballstemmer 3.1.1-1 install ok installed python3-soupsieve python3-soupsieve 2.8.4-1 install ok installed python3-sphinx python3-sphinx 9.2.0-1 install ok installed python3-threadpoolctl python3-threadpoolctl 3.7.0-2 install ok installed python3-typing-extensions python3-typing-extensions 4.16.0-5 install ok installed python3-typing-inspection python3-typing-inspection 0.4.4-1 install ok installed python3-urllib3 python3-urllib3 2.8.0-2 install ok installed python3-yaml python3-yaml 6.0.3-1+b2 install ok installed python3-zarr python3-zarr 3.4.1-2 install ok installed python3.14 python3.14 3.14.10-1 install ok installed python3.14-minimal python3.14-minimal 3.14.10-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sphinx-common sphinx-common 9.2.0-1 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-7 install ok installed tzdata tzdata 2026f-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.4-1 install ok installed xml-core xml-core 0.21 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-4 1m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'liblapack3:amd64', 'liblzf1:amd64', 'libperl5.42:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.42', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-anndata', 'python3-annotated-types', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-dnspython', 'python3-docutils', 'python3-donfig', 'python3-dotenv', 'python3-email-validator', 'python3-h5py', 'python3-h5py-serial', 'python3-hmmlearn', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-joblib', 'python3-legacy-api-wrap', 'python3-markupsafe', 'python3-minimal', 'python3-msgspec', 'python3-narwhals', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-settings', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-scverse-misc-settings', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core', 'macs'] 1m31.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates docutils-common libblas3 libblosc1 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libhdf5-320 libhdf5-hl-320 libjs-sphinxdoc libjson-perl liblapack3 liblzf1 libperl5.42 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 libyaml-0-2 macs media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.42 python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-anndata python3-annotated-types python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-dnspython python3-docutils python3-donfig python3-dotenv python3-email-validator python3-h5py python3-h5py-serial python3-hmmlearn python3-idna python3-imagesize python3-jinja2 python3-joblib python3-legacy-api-wrap python3-markupsafe python3-minimal python3-msgspec python3-narwhals python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydantic python3-pydantic-core python3-pydantic-settings python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-scverse-misc-settings python3-sklearn python3-sklearn-lib python3-snowballstemmer python3-soupsieve python3-sphinx python3-threadpoolctl python3-typing-extensions python3-typing-inspection python3-urllib3 python3-yaml python3-zarr python3.14 python3.14-minimal readline-common sgml-base sphinx-common xml-core 0 upgraded, 0 newly installed, 100 to remove and 0 not upgraded. After this operation, 525 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26176 files and directories currently installed.) Removing macs (3.1.0-1) ... Removing python3-anndata (0.13.4-2) ... Removing python3-zarr (3.4.1-2) ... Removing python3-numcodecs (0.17.1+ds-1) ... Removing python3-pydata-sphinx-theme (0.23.0+dfsg-1) ... Removing python3-sphinx (9.2.0-1) ... Removing python3-requests (2.34.2-1) ... Removing python3-certifi (2026.10.23+ds-1) ... Removing ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-docutils (0.23+dfsg-2) ... Removing docutils-common (0.23+dfsg-2) ... Removing python3-hmmlearn (0.3.3-2) ... Removing python3-sklearn (1.9.0+dfsg-2) ... Removing python3-scipy (1.17.1-5+b2) ... Removing python3-pandas (2.3.3+dfsg-6) ... Removing python3-sklearn-lib:amd64 (1.9.0+dfsg-2+b1) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-6) ... Removing python3-h5py (3.16.0-8) ... Removing python3-h5py-serial (3.16.0-8) ... Removing python3-numpy (1:2.4.6+ds-5+b1) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing python3-donfig (0.8.1+dfsg-3) ... Removing python3-yaml (6.0.3-1+b2) ... Removing python3-bs4 (4.15.0-1) ... Removing python3-soupsieve (2.8.4-1) ... Removing python3-scverse-misc-settings (0.1.6-2) ... Removing python3-scverse-misc (0.1.6-2) ... Removing python3-msgspec (0.22.0-2+b1) ... Removing python3-snowballstemmer (3.1.1-1) ... Removing sphinx-common (9.2.0-1) ... Removing libjson-perl (4.10000-1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgfortran5:amd64 (16.2.0-4) ... Removing libgomp1:amd64 (16.2.0-4) ... Removing libhdf5-hl-320:amd64 (2.2.0+repack-6) ... Removing libhdf5-320:amd64 (2.2.0+repack-6) ... Removing libjs-sphinxdoc (9.2.0-1) ... Removing liblzf1:amd64 (3.6-4+b4) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing libsnappy1v5:amd64 (1.3.1-4) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing python3-pydantic-settings (2.16.1-1) ... Removing python3-pydantic (2.14.1-1) ... Removing python3-email-validator (2.3.0-1) ... Removing python3-dnspython (2.8.0-7) ... Removing node-fortawesome-fontawesome-free (7.3.1+ds1-1) ... Removing openssl (3.6.5-1) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing python3-babel (2.18.0+git2026-08-12-3) ... Removing python-babel-localedata (2.18.0+git2026-08-12-3) ... Removing python3-accessible-pygments (0.0.5-2) ... Removing python3-alabaster (1.0.0-2) ... Removing python3-annotated-types (0.8.0-1) ... Removing python3-array-api-compat (1.11.2-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.7-2+b3) ... Removing python3-crc32c (2.7.1-1+b3) ... Removing python3-dateutil (3.0.0-2) ... Removing python3-decorator (5.3.1-1) ... Removing python3-dotenv (1.2.1-2) ... Removing python3-idna (3.20-1) ... Removing python3-imagesize (2.0.1-1) ... Removing python3-jinja2 (3.1.6-4) ... Removing python3-joblib (1.5.3-2) ... Removing python3-legacy-api-wrap (1.5-1) ... Removing python3-markupsafe (3.0.3-2+b2) ... Removing python3-narwhals (2.26.0-1) ... Removing python3-natsort (8.4.0-2) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-5+b1) ... Removing python3-packaging (26.2-3) ... Removing python3-pydantic-core (2.50.1-3) ... Removing python3-pygments (2.20.0+dfsg-2) ... Removing python3-pytz (2026.5-1) ... Removing python3-roman-numerals (4.1.0-1) ... Removing python3-threadpoolctl (3.7.0-2) ... Removing python3-typing-inspection (0.4.4-1) ... Removing python3-typing-extensions (4.16.0-5) ... Removing python3-urllib3 (2.8.0-2) ... Removing xml-core (0.21) ... Removing sgml-base (1.31+nmu1) ... Removing python3 (3.14.8-1) ... Removing python3.14 (3.14.10-1) ... Removing python3-minimal (3.14.8-1) ... Removing python3.14-minimal (3.14.10-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.8-1) ... Removing libpython3.14-stdlib:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libpython3.14-minimal:amd64 (3.14.10-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-7) ... 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'liblapack3:amd64', 'liblzf1:amd64', 'libperl5.42:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.42', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-anndata', 'python3-annotated-types', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-dnspython', 'python3-docutils', 'python3-donfig', 'python3-dotenv', 'python3-email-validator', 'python3-h5py', 'python3-h5py-serial', 'python3-hmmlearn', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-joblib', 'python3-legacy-api-wrap', 'python3-markupsafe', 'python3-minimal', 'python3-msgspec', 'python3-narwhals', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-settings', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-scverse-misc-settings', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core', 'macs'] 1m31.9s INFO: Running scripts post_remove 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_remove_cleanup'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_remove_cleanup'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_remove_exceptions'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_remove_exceptions'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'liblapack3:amd64', 'liblzf1:amd64', 'libperl5.42:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.42', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-anndata', 'python3-annotated-types', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-dnspython', 'python3-docutils', 'python3-donfig', 'python3-dotenv', 'python3-email-validator', 'python3-h5py', 'python3-h5py-serial', 'python3-hmmlearn', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-joblib', 'python3-legacy-api-wrap', 'python3-markupsafe', 'python3-minimal', 'python3-msgspec', 'python3-narwhals', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-settings', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-scverse-misc-settings', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core'] 1m32.1s DUMP: (Reading database ... 5506 files and directories currently installed.) Purging configuration files for ca-certificates (20260816+nmu1) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for docutils-common (0.23+dfsg-2) ... dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libblosc1 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-320 which is not installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which is not installed dpkg: warning: ignoring request to remove libjson-perl which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblzf1 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.10-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... dpkg: warning: ignoring request to remove node-fortawesome-fontawesome-free which is not installed Purging configuration files for openssl (3.6.5-1) ... Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove python-babel-localedata which is not installed Purging configuration files for python3 (3.14.8-1) ... dpkg: warning: ignoring request to remove python3-accessible-pygments which is not installed dpkg: warning: ignoring request to remove python3-alabaster which is not installed dpkg: warning: ignoring request to remove python3-anndata which is not installed dpkg: warning: ignoring request to remove python3-annotated-types which is not installed dpkg: warning: ignoring request to remove python3-array-api-compat which is not installed dpkg: warning: ignoring request to remove python3-babel which is not installed dpkg: warning: ignoring request to remove python3-bs4 which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-crc32c which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-dnspython which is not installed dpkg: warning: ignoring request to remove python3-docutils which is not installed dpkg: warning: ignoring request to remove python3-donfig which is not installed dpkg: warning: ignoring request to remove python3-dotenv which is not installed dpkg: warning: ignoring request to remove python3-email-validator which is not installed dpkg: warning: ignoring request to remove python3-h5py which is not installed dpkg: warning: ignoring request to remove python3-h5py-serial which is not installed dpkg: warning: ignoring request to remove python3-hmmlearn which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-imagesize which is not installed dpkg: warning: ignoring request to remove python3-jinja2 which is not installed dpkg: warning: ignoring request to remove python3-joblib which is not installed dpkg: warning: ignoring request to remove python3-legacy-api-wrap which is not installed dpkg: warning: ignoring request to remove python3-markupsafe which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-msgspec which is not installed dpkg: warning: ignoring request to remove python3-narwhals which is not installed dpkg: warning: ignoring request to remove python3-natsort which is not installed dpkg: warning: ignoring request to remove python3-numcodecs which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-5+b1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pydantic which is not installed dpkg: warning: ignoring request to remove python3-pydantic-core which is not installed dpkg: warning: ignoring request to remove python3-pydantic-settings which is not installed dpkg: warning: ignoring request to remove python3-pydata-sphinx-theme which is not installed dpkg: warning: ignoring request to remove python3-pygments which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-roman-numerals which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3-scverse-misc which is not installed dpkg: warning: ignoring request to remove python3-scverse-misc-settings which is not installed dpkg: warning: ignoring request to remove python3-sklearn which is not installed dpkg: warning: ignoring request to remove python3-sklearn-lib which is not installed dpkg: warning: ignoring request to remove python3-snowballstemmer which is not installed dpkg: warning: ignoring request to remove python3-soupsieve which is not installed dpkg: warning: ignoring request to remove python3-sphinx which is not installed dpkg: warning: ignoring request to remove python3-threadpoolctl which is not installed dpkg: warning: ignoring request to remove python3-typing-extensions which is not installed dpkg: warning: ignoring request to remove python3-typing-inspection which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3-zarr which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.10-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sgml-base (1.31+nmu1) ... dpkg: warning: ignoring request to remove sphinx-common which is not installed Purging configuration files for xml-core (0.21) ... 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'libhdf5-hl-320:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'liblapack3:amd64', 'liblzf1:amd64', 'libperl5.42:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.42', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-anndata', 'python3-annotated-types', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-dnspython', 'python3-docutils', 'python3-donfig', 'python3-dotenv', 'python3-email-validator', 'python3-h5py', 'python3-h5py-serial', 'python3-hmmlearn', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-joblib', 'python3-legacy-api-wrap', 'python3-markupsafe', 'python3-minimal', 'python3-msgspec', 'python3-narwhals', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydantic', 'python3-pydantic-core', 'python3-pydantic-settings', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-scverse-misc-settings', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-threadpoolctl', 'python3-typing-extensions', 'python3-typing-inspection', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.14', 'python3.14-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', 'macs'] 1m32.1s DUMP: dpkg: warning: ignoring request to remove macs which is not installed 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', 'macs'] 1m32.1s INFO: Running scripts post_purge 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_purge_exceptions'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_purge_exceptions'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_purge_manual_cleanup'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_purge_manual_cleanup'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', '--pending'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--purge', '--pending'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--remove', '--pending'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg', '--remove', '--pending'] 1m32.1s INFO: Running scripts post_test 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_test_exceptions'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'tmp/scripts/post_test_exceptions'] 1m32.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m32.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m32.9s DEBUG: No broken symlinks as far as we can find. 1m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-divert', '--list'] 1m32.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'dpkg-divert', '--list'] 1m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'clean'] 1m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk', 'apt-get', 'clean'] 1m33.0s DEBUG: Recording chroot state 1m34.5s INFO: PASS: Installation and purging test. 1m34.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/shm'] 1m34.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/shm'] 1m34.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/console'] 1m34.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/console'] 1m34.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/ptmx'] 1m34.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/ptmx'] 1m34.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/pts'] 1m34.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/dev/pts'] 1m34.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/proc'] 1m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk/proc'] 1m35.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m35.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpteqdc5rk'] 1m35.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpteqdc5rk 1m35.2s INFO: PASS: All tests. 1m35.2s INFO: piuparts run ends. ret=0 End: 2026-10-30 16:07:22 GMT