Start: 2024-10-12 04:03:01 GMT Package: mrbayes Source: mrbayes (3.2.7a-7) Version: 3.2.7a-7+b1 Installed-Size: 2684 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8t64 (>= 6.0) Suggests: mrbayes-doc Description: Bayesian Inference of Phylogeny Homepage: http://mrbayes.csit.fsu.edu/ Description-md5: 3042004cf4140cc8d89cbd6d7860f485 Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes_3.2.7a-7+b1_amd64.deb Size: 660604 MD5sum: ffdb961b8f4802527746cfe5ecbb9219 SHA256: b7f93eaa1cdd09c7f7cdc0d001a4d56b64d18876d753515179063b910ebc0748 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt mrbayes=3.2.7a-7+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt mrbayes=3.2.7a-7+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9iftytzr 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9iftytzr 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9iftytzr/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp9iftytzr/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [202 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.0 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7337 kB] Fetched 17.6 MB in 1s (11.7 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: hostname libdb5.3t64 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 710 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.25 [11.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-8 [699 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 710 kB in 0s (10.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5127 files and directories currently installed.) Preparing to unpack .../hostname_3.25_amd64.deb ... Unpacking hostname (3.25) over (3.24) ... Setting up hostname (3.25) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5127 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-8_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-8) over (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-8) ... Processing triggers for libc-bin (2.40-3) ... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: 640b0601a46bd4998431b0b5f88dadc6 - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_fake-essential'] 0m4.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.67). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 672 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 672 kB in 0s (10.7 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5127 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.24) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_fake-essential'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'clean'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'clean'] 0m4.3s DEBUG: Recording chroot state 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mount mount 2.40.2-9 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-divert', '--list'] 0m4.5s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-divert', '--list'] 0m4.5s INFO: Running scripts is_testable 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: apt-cache does not know about any of the requested packages 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'show', '--no-all-versions', 'mrbayes=3.2.7a-7+b1'] 0m5.6s DUMP: Package: mrbayes Source: mrbayes (3.2.7a-7) Version: 3.2.7a-7+b1 Installed-Size: 2684 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8t64 (>= 6.0) Suggests: mrbayes-doc Description-en: Bayesian Inference of Phylogeny Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. Description-md5: 3042004cf4140cc8d89cbd6d7860f485 Homepage: http://mrbayes.csit.fsu.edu/ Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes_3.2.7a-7+b1_amd64.deb Size: 660604 MD5sum: ffdb961b8f4802527746cfe5ecbb9219 SHA256: b7f93eaa1cdd09c7f7cdc0d001a4d56b64d18876d753515179063b910ebc0748 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'show', '--no-all-versions', 'mrbayes=3.2.7a-7+b1'] 0m5.6s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8t64 (>= 6.0) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m5.6s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpbkzb3ug7/piuparts-depends-dummy'] 0m5.6s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpbkzb3ug7/piuparts-depends-dummy.deb'. 0m5.6s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpbkzb3ug7/piuparts-depends-dummy'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.6s DUMP: 2.9.8 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.6s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpbkzb3ug7/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp9iftytzr/tmp 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m12.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libhmsbeagle1v5 libicu72 libllvm19 libllvmspirvlib19.1 libreadline8t64 libxml2 libz3-4 mesa-opencl-icd ocl-icd-libopencl1 readline-common Suggested packages: readline-doc Recommended packages: libclang-rt-19-dev The following NEW packages will be installed: libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libhmsbeagle1v5 libicu72 libllvm19 libllvmspirvlib19.1 libreadline8t64 libxml2 libz3-4 mesa-opencl-icd ocl-icd-libopencl1 piuparts-depends-dummy readline-common 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 93.8 MB/93.8 MB of archives. After this operation, 497 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [682 B] Get:2 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-5 [69.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libclang-common-19-dev amd64 1:19.1.1-1 [738 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20240808-1 [93.9 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libllvm19 amd64 1:19.1.1-1 [26.0 MB] Get:9 http://deb.debian.org/debian sid/main amd64 libclang-cpp19 amd64 1:19.1.1-1 [13.2 MB] Get:10 http://deb.debian.org/debian sid/main amd64 libclc-19-dev all 1:19.1.1-1 [64.8 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libclc-19 all 1:19.1.1-1 [12.1 MB] Get:12 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.123-1 [8084 B] Get:13 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.123-1 [22.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get:18 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libllvmspirvlib19.1 amd64 19.1.0-1 [891 kB] Get:20 http://deb.debian.org/debian sid/main amd64 mesa-opencl-icd amd64 24.2.4-1 [22.5 MB] Get:21 http://deb.debian.org/debian sid/main amd64 libhmsbeagle1v5 amd64 3.1.2+dfsg-13+b1 [139 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.8 MB in 5s (20.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5479 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libclang-common-19-dev:amd64. Preparing to unpack .../01-libclang-common-19-dev_1%3a19.1.1-1_amd64.deb ... Unpacking libclang-common-19-dev:amd64 (1:19.1.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20240808-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20240808-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../03-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../04-libxml2_2.12.7+dfsg+really2.9.14-0.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../05-libz3-4_4.8.12-3.1+b2_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1+b2) ... Selecting previously unselected package libllvm19:amd64. Preparing to unpack .../06-libllvm19_1%3a19.1.1-1_amd64.deb ... Unpacking libllvm19:amd64 (1:19.1.1-1) ... Selecting previously unselected package libclang-cpp19. Preparing to unpack .../07-libclang-cpp19_1%3a19.1.1-1_amd64.deb ... Unpacking libclang-cpp19 (1:19.1.1-1) ... Selecting previously unselected package libclc-19-dev. Preparing to unpack .../08-libclc-19-dev_1%3a19.1.1-1_all.deb ... Unpacking libclc-19-dev (1:19.1.1-1) ... Selecting previously unselected package libclc-19. Preparing to unpack .../09-libclc-19_1%3a19.1.1-1_all.deb ... Unpacking libclc-19 (1:19.1.1-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../10-libdrm-common_2.4.123-1_all.deb ... Unpacking libdrm-common (2.4.123-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../11-libdrm2_2.4.123-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../12-libdrm-amdgpu1_2.4.123-1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../13-libdrm-radeon1_2.4.123-1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../14-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../15-libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../16-ocl-icd-libopencl1_2.3.2-1+b1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Selecting previously unselected package libllvmspirvlib19.1:amd64. Preparing to unpack .../17-libllvmspirvlib19.1_19.1.0-1_amd64.deb ... Unpacking libllvmspirvlib19.1:amd64 (19.1.0-1) ... Selecting previously unselected package mesa-opencl-icd:amd64. Preparing to unpack .../18-mesa-opencl-icd_24.2.4-1_amd64.deb ... Unpacking mesa-opencl-icd:amd64 (24.2.4-1) ... Selecting previously unselected package libhmsbeagle1v5:amd64. Preparing to unpack .../19-libhmsbeagle1v5_3.1.2+dfsg-13+b1_amd64.deb ... Unpacking libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../20-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../21-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up libclang-common-19-dev:amd64 (1:19.1.1-1) ... Setting up libedit2:amd64 (3.1-20240808-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Setting up libdrm-common (2.4.123-1) ... Setting up libclc-19-dev (1:19.1.1-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libllvm19:amd64 (1:19.1.1-1) ... Setting up libclc-19 (1:19.1.1-1) ... Setting up libllvmspirvlib19.1:amd64 (19.1.0-1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libdrm2:amd64 (2.4.123-1) ... Setting up libclang-cpp19 (1:19.1.1-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... Setting up libdrm-radeon1:amd64 (2.4.123-1) ... Setting up mesa-opencl-icd:amd64 (24.2.4-1) ... Setting up libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m12.8s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m12.8s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp9iftytzr/./tmp/piuparts-depends-dummy.deb 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m12.8s DUMP: piuparts-depends-dummy install ok installed 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m12.8s DUMP: (Reading database ... 6370 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'clean'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'clean'] 0m12.9s DEBUG: Recording chroot state 0m13.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m13.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m13.6s ERROR: WARN: Broken symlinks: /usr/lib/clang/19.1.1/lib -> ../../llvm-19/lib/clang/19/lib /usr/lib/clang/19/lib -> ../../llvm-19/lib/clang/19/lib 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy'] 0m14.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy', 'mrbayes'] 0m14.1s DUMP: mrbayes: Installed: (none) Candidate: 3.2.7a-7+b1 Version table: 3.2.7a-7+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy', 'mrbayes'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', 'install', 'mrbayes=3.2.7a-7+b1'] 0m15.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: mrbayes-doc The following NEW packages will be installed: mrbayes 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 661 kB of archives. After this operation, 2748 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 mrbayes amd64 3.2.7a-7+b1 [661 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 661 kB in 1s (815 kB/s) Selecting previously unselected package mrbayes. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6370 files and directories currently installed.) Preparing to unpack .../mrbayes_3.2.7a-7+b1_amd64.deb ... Unpacking mrbayes (3.2.7a-7+b1) ... Setting up mrbayes (3.2.7a-7+b1) ... 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', 'install', 'mrbayes=3.2.7a-7+b1'] 0m15.4s INFO: Running scripts post_install 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_install_exceptions'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_install_exceptions'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'remove', 'mrbayes'] 0m15.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libhmsbeagle1v5 libicu72 libllvm19 libllvmspirvlib19.1 libreadline8t64 libxml2 libz3-4 mesa-opencl-icd ocl-icd-libopencl1 readline-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: mrbayes 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 2748 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6388 files and directories currently installed.) Removing mrbayes (3.2.7a-7+b1) ... 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'remove', 'mrbayes'] 0m15.8s INFO: Reinstalling after remove 0m15.8s INFO: Running scripts pre_install 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_database-server'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_database-server'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_exceptions'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_extras'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_extras'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy'] 0m15.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy', 'mrbayes'] 0m15.9s DUMP: mrbayes: Installed: (none) Candidate: 3.2.7a-7+b1 Version table: 3.2.7a-7+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy', 'mrbayes'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', 'install', 'mrbayes=3.2.7a-7+b1'] 0m16.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: mrbayes-doc The following NEW packages will be installed: mrbayes debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/661 kB of archives. After this operation, 2748 kB of additional disk space will be used. Selecting previously unselected package mrbayes. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6370 files and directories currently installed.) Preparing to unpack .../mrbayes_3.2.7a-7+b1_amd64.deb ... Unpacking mrbayes (3.2.7a-7+b1) ... Setting up mrbayes (3.2.7a-7+b1) ... 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', 'install', 'mrbayes=3.2.7a-7+b1'] 0m16.4s INFO: Running scripts post_install 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_install_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_install_exceptions'] 0m16.4s INFO: Running scripts pre_install 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_database-server'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_exceptions'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_extras'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy'] 0m16.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy', 'mrbayes'] 0m16.4s DUMP: mrbayes: Installed: 3.2.7a-7+b1 Candidate: 3.2.7a-7+b1 Version table: *** 3.2.7a-7+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-cache', 'policy', 'mrbayes'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', 'install', '--reinstall', 'mrbayes=3.2.7a-7+b1'] 0m16.8s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/661 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6388 files and directories currently installed.) Preparing to unpack .../mrbayes_3.2.7a-7+b1_amd64.deb ... Unpacking mrbayes (3.2.7a-7+b1) over (3.2.7a-7+b1) ... Setting up mrbayes (3.2.7a-7+b1) ... 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', '-y', 'install', '--reinstall', 'mrbayes=3.2.7a-7+b1'] 0m16.8s INFO: Running scripts post_install 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_install_exceptions'] 0m16.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m17.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m17.4s ERROR: WARN: Broken symlinks: /usr/lib/clang/19.1.1/lib -> ../../llvm-19/lib/clang/19/lib (libclang-common-19-dev:amd64) /usr/lib/clang/19/lib -> ../../llvm-19/lib/clang/19/lib (libclang-common-19-dev:amd64) 0m17.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', '-ac', '--ignore-obsolete'] 0m18.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', '-ac', '--ignore-obsolete'] 0m18.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.8s DUMP: 0.15.6 0m18.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.8s INFO: Running adequate version 0.15.6 now. 0m18.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'mrbayes'] 0m18.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'mrbayes'] 0m18.8s INFO: Running scripts pre_remove 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_exceptions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_exceptions'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.4s DUMP: install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1+b1 install ok installed bsdutils bsdutils 1:2.40.2-9 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-9 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-6 install ok installed gpgv gpgv 2.2.44-1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.67 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libblkid1:amd64 libblkid1 2.40.2-9 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-3 install ok installed libc6:amd64 libc6 2.40-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libclang-common-19-dev:amd64 libclang-common-19-dev 1:19.1.1-1 install ok installed libclang-cpp19 libclang-cpp19 1:19.1.1-1 install ok installed libclc-19 libclc-19 1:19.1.1-1 install ok installed libclc-19-dev libclc-19-dev 1:19.1.1-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.123-1 install ok installed libdrm-common libdrm-common 2.4.123-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.123-1 install ok installed libdrm2:amd64 libdrm2 2.4.123-1 install ok installed libedit2:amd64 libedit2 3.1-20240808-1 install ok installed libelf1t64:amd64 libelf1t64 0.191-2 install ok installed libexpat1:amd64 libexpat1 2.6.3-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-4 install ok installed libhmsbeagle1v5:amd64 libhmsbeagle1v5 3.1.2+dfsg-13+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libicu72:amd64 libicu72 72.1-5 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libllvm19:amd64 libllvm19 1:19.1.1-1 install ok installed libllvmspirvlib19.1:amd64 libllvmspirvlib19.1 19.1.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-9 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-5 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-3 install ok installed libsemanage-common libsemanage-common 3.7-2 install ok installed libsemanage2:amd64 libsemanage2 3.7-2 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-9 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.3.2-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-6 install ok installed libsystemd0:amd64 libsystemd0 256.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 256.7-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-9 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.2-9 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240905-1 install ok installed mesa-opencl-icd:amd64 mesa-opencl-icd 24.2.4-1 install ok installed mount mount 2.40.2-9 install ok installed mrbayes mrbayes 3.2.7a-7+b1 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.2-1 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed readline-common readline-common 8.2-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.10-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024b-3 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-9 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'remove', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libreadline8t64:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common', 'mrbayes'] 0m20.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libclang-common-19-dev libclang-cpp19 libclc-19 libclc-19-dev libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2 libedit2 libelf1t64 libexpat1 libhmsbeagle1v5 libicu72 libllvm19 libllvmspirvlib19.1 libreadline8t64 libxml2 libz3-4 mesa-opencl-icd mrbayes ocl-icd-libopencl1 readline-common 0 upgraded, 0 newly installed, 22 to remove and 0 not upgraded. After this operation, 499 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6388 files and directories currently installed.) Removing mrbayes (3.2.7a-7+b1) ... Removing libhmsbeagle1v5:amd64 (3.1.2+dfsg-13+b1) ... Removing mesa-opencl-icd:amd64 (24.2.4-1) ... Removing libclc-19 (1:19.1.1-1) ... Removing libclang-common-19-dev:amd64 (1:19.1.1-1) ... Removing libclang-cpp19 (1:19.1.1-1) ... Removing libclc-19-dev (1:19.1.1-1) ... Removing libdrm-amdgpu1:amd64 (2.4.123-1) ... Removing libdrm-radeon1:amd64 (2.4.123-1) ... Removing libdrm2:amd64 (2.4.123-1) ... Removing libdrm-common (2.4.123-1) ... Removing libllvmspirvlib19.1:amd64 (19.1.0-1) ... Removing libllvm19:amd64 (1:19.1.1-1) ... Removing libedit2:amd64 (3.1-20240808-1) ... Removing libelf1t64:amd64 (0.191-2) ... Removing libexpat1:amd64 (2.6.3-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Removing libicu72:amd64 (72.1-5) ... Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Removing readline-common (8.2-5) ... Processing triggers for libc-bin (2.40-3) ... 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'remove', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libreadline8t64:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common', 'mrbayes'] 0m20.0s INFO: Running scripts post_remove 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_remove_cleanup'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_remove_cleanup'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_remove_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_remove_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libreadline8t64:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common'] 0m20.0s DUMP: dpkg: warning: ignoring request to remove libclang-common-19-dev which isn't installed dpkg: warning: ignoring request to remove libclang-cpp19 which isn't installed dpkg: warning: ignoring request to remove libclc-19 which isn't installed dpkg: warning: ignoring request to remove libclc-19-dev which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libhmsbeagle1v5 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libllvm19 which isn't installed dpkg: warning: ignoring request to remove libllvmspirvlib19.1 which isn't installed (Reading database ... 5483 files and directories currently installed.) Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed Purging configuration files for mesa-opencl-icd:amd64 (24.2.4-1) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for readline-common (8.2-5) ... 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', 'libclang-common-19-dev:amd64', 'libclang-cpp19', 'libclc-19', 'libclc-19-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libexpat1:amd64', 'libhmsbeagle1v5:amd64', 'libicu72:amd64', 'libllvm19:amd64', 'libllvmspirvlib19.1:amd64', 'libreadline8t64:amd64', 'libxml2:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'ocl-icd-libopencl1:amd64', 'readline-common'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', 'mrbayes'] 0m20.0s DUMP: dpkg: warning: ignoring request to remove mrbayes which isn't installed 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', 'mrbayes'] 0m20.0s INFO: Running scripts post_purge 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_purge_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_purge_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_purge_manual_cleanup'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_purge_manual_cleanup'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', '--pending'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--purge', '--pending'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--remove', '--pending'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg', '--remove', '--pending'] 0m20.0s INFO: Running scripts post_test 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_test_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'tmp/scripts/post_test_exceptions'] 0m20.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m20.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m20.5s DEBUG: No broken symlinks as far as we can find. 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-divert', '--list'] 0m20.5s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'dpkg-divert', '--list'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'clean'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9iftytzr', 'apt-get', 'clean'] 0m20.5s DEBUG: Recording chroot state 0m20.8s INFO: PASS: Installation and purging test. 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/shm'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/shm'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/console'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/console'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/ptmx'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/ptmx'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/pts'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/dev/pts'] 0m21.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/proc'] 0m21.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9iftytzr/proc'] 0m21.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m21.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9iftytzr'] 0m21.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9iftytzr 0m21.2s INFO: PASS: All tests. 0m21.2s INFO: piuparts run ends. ret=0 End: 2024-10-12 04:03:22 GMT