Start: 2025-10-26 21:25:18 GMT Package: pyensembl Version: 2.3.13-3 Installed-Size: 206 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pkg-resources, pylint, python3-datacache, python3-gtfparse, python3-memoized-property, python3-serializable, python3-typechecks, python3:any Description: installs data from the Ensembl genome database Homepage: https://github.com/openvax/pyensembl Description-md5: 0b4cf71520b18a30bd774c31a93bb666 Section: science Priority: optional Filename: pool/main/p/pyensembl/pyensembl_2.3.13-3_all.deb Size: 36864 MD5sum: 400a51ea065cc5f32513e54cf53447d2 SHA256: 97c95bef29727be55c49394658e427e5ebc6ae09fa29276d4712de7fcea9a80c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pyensembl=2.3.13-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pyensembl=2.3.13-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxjh24r_t 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxjh24r_t 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxjh24r_t/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpxjh24r_t/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'update'] 0m4.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [207 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7452 kB] Fetched 17.9 MB in 3s (5391 kB/s) Reading package lists... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'update'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-yf', 'dist-upgrade'] 0m6.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg7.0 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2744 kB of archives. After this operation, 165 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.1.11 [1229 kB] Get:2 http://deb.debian.org/debian sid/main amd64 apt amd64 3.1.11 [1515 kB] Fetched 2744 kB in 1s (4871 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4879 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.11_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.11) over (3.1.9) ... Setting up libapt-pkg7.0:amd64 (3.1.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4880 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.11_amd64.deb ... Unpacking apt (3.1.11) over (3.1.9) ... Setting up apt (3.1.11) ... Processing triggers for libc-bin (2.41-12) ... 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-yf', 'dist-upgrade'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.9s DUMP: aca4f654540590f8fa7f1d109bee1118 - 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.9s INFO: Running scripts post_setup 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_dummy_users'] 0m9.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_dummy_users'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_fake-essential'] 0m11.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1776 kB of archives. After this operation, 4974 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0052 [43.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.25 [604 kB] Preconfiguring packages ... Fetched 1776 kB in 1s (3512 kB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4881 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.25_all.deb ... Unpacking dbconfig-common (2.0.25) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.4-9) ... Setting up ucf (3.0052) ... Setting up dbconfig-common (2.0.25) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-12) ... 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_fake-essential'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_forbid_home'] 0m11.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_forbid_home'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_minimize'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_minimize'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_zz_backports'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_setup_zz_backports'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'clean'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'clean'] 0m11.1s DEBUG: Recording chroot state 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.7s DUMP: install ok installed apt apt 3.1.11 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-7 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.11 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-7 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-2 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 258.1-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258.1-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-4 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed procps procps 2:4.0.4-9 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.15-5 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed util-linux util-linux 2.41.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-divert', '--list'] 0m11.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-divert', '--list'] 0m11.7s INFO: Running scripts is_testable 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/is_testable_uninstallable'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/is_testable_uninstallable'] 0m11.7s INFO: apt-cache does not know about any of the requested packages 0m11.7s INFO: Running scripts pre_test 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_test_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_test_exceptions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_test_root_password'] 0m11.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_test_root_password'] 0m11.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m12.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m12.6s DEBUG: No broken symlinks as far as we can find. 0m12.6s INFO: Running scripts pre_install 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_database-server'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_database-server'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_extras'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_extras'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'show', '--no-all-versions', 'pyensembl=2.3.13-3'] 0m13.5s DUMP: Package: pyensembl Version: 2.3.13-3 Installed-Size: 206 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-pkg-resources, pylint, python3-datacache, python3-gtfparse, python3-memoized-property, python3-serializable, python3-typechecks, python3:any Description-en: installs data from the Ensembl genome database The Ensembl genome database is an established reference for genomic sequences and their automated annotation. To have this data local has advantages for bulk analyses, e.g. for the mapping of reads from RNA-seq against the latest golden path - or a previous one to compare analyses. . This package provides a reproducible way to install this data and thus simplify the automation of respective workflows. Description-md5: 0b4cf71520b18a30bd774c31a93bb666 Homepage: https://github.com/openvax/pyensembl Section: science Priority: optional Filename: pool/main/p/pyensembl/pyensembl_2.3.13-3_all.deb Size: 36864 MD5sum: 400a51ea065cc5f32513e54cf53447d2 SHA256: 97c95bef29727be55c49394658e427e5ebc6ae09fa29276d4712de7fcea9a80c 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'show', '--no-all-versions', 'pyensembl=2.3.13-3'] 0m13.5s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: python3-pkg-resources, pylint, python3-datacache, python3-gtfparse, python3-memoized-property, python3-serializable, python3-typechecks, python3:any Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m13.5s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpjnlo58_7/piuparts-depends-dummy'] 0m13.6s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpjnlo58_7/piuparts-depends-dummy.deb'. 0m13.6s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpjnlo58_7/piuparts-depends-dummy'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m13.6s DUMP: 3.1.11 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m13.6s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpjnlo58_7/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpxjh24r_t/tmp 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m36.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsqlite3-0 media-types netbase openssl pylint python3 python3-astroid python3-autocommand python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-dill python3-gtfparse python3-idna python3-inflect python3-isort python3-jaraco.context python3-jaraco.functools python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-more-itertools python3-mypy-extensions python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pkg-resources python3-platformdirs python3-pytz python3-requests python3-serializable python3-tomlkit python3-typechecks python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python-charset-normalizer-doc python3-objgraph gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python3-cryptography python3-openssl python3-socks python-requests-doc python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: python3-tk python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba The following NEW packages will be installed: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsqlite3-0 media-types netbase openssl piuparts-depends-dummy pylint python3 python3-astroid python3-autocommand python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-dill python3-gtfparse python3-idna python3-inflect python3-isort python3-jaraco.context python3-jaraco.functools python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-more-itertools python3-mypy-extensions python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pkg-resources python3-platformdirs python3-pytz python3-requests python3-serializable python3-tomlkit python3-typechecks python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 27.5 MB/27.5 MB of archives. After this operation, 126 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [700 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-3 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.3.3+ds-3 [138 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.3.3+ds-3 [5151 kB] Get:21 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get:22 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20250419 [162 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3-astroid all 3.3.8-2 [213 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3-isort all 7.0.0-1 [72.5 kB] Get:26 http://deb.debian.org/debian sid/main amd64 python3-mypy-extensions all 1.1.0-1 [6656 B] Get:27 http://deb.debian.org/debian sid/main amd64 python3-logilab-common all 2.1.0-1 [111 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.4.0-1 [83.7 kB] Get:29 http://deb.debian.org/debian sid/main amd64 python3-mccabe all 0.7.0-1 [10.5 kB] Get:30 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get:31 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.13.3-2 [44.4 kB] Get:32 http://deb.debian.org/debian sid/main amd64 pylint all 3.3.4-2 [333 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:34 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:35 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-2 [4362 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.3.3+dfsg-2 [2935 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:42 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get:43 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-typechecks all 0.1.0+ds-4 [4580 B] Get:45 http://deb.debian.org/debian sid/main amd64 python3-datacache all 1.4.1-2 [12.9 kB] Get:46 http://deb.debian.org/debian sid/main amd64 python3-gtfparse all 1.3.0+ds-2 [10.2 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:51 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-memoized-property all 1.0.3-2 [5552 B] Get:53 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-serializable all 0.4.1+ds-2 [8400 B] Preconfiguring packages ... Fetched 27.5 MB in 1s (19.9 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5420 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5754 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. 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Preparing to unpack .../00-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../01-python3-numpy-dev_1%3a2.3.3+ds-3_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.3.3+ds-3) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../02-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_15.2.0-7_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-7) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../04-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.3.3+ds-3_amd64.deb ... Unpacking python3-numpy (1:2.3.3+ds-3) ... Selecting previously unselected package openssl. Preparing to unpack .../06-openssl_3.5.4-1_amd64.deb ... Unpacking openssl (3.5.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../07-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../08-python3-typing-extensions_4.15.0-1_all.deb ... Unpacking python3-typing-extensions (4.15.0-1) ... Selecting previously unselected package python3-astroid. Preparing to unpack .../09-python3-astroid_3.3.8-2_all.deb ... Unpacking python3-astroid (3.3.8-2) ... Selecting previously unselected package python3-isort. Preparing to unpack .../10-python3-isort_7.0.0-1_all.deb ... Unpacking python3-isort (7.0.0-1) ... Selecting previously unselected package python3-mypy-extensions. Preparing to unpack .../11-python3-mypy-extensions_1.1.0-1_all.deb ... Unpacking python3-mypy-extensions (1.1.0-1) ... Selecting previously unselected package python3-logilab-common. Preparing to unpack .../12-python3-logilab-common_2.1.0-1_all.deb ... Unpacking python3-logilab-common (2.1.0-1) ... Selecting previously unselected package python3-dill. Preparing to unpack .../13-python3-dill_0.4.0-1_all.deb ... Unpacking python3-dill (0.4.0-1) ... Selecting previously unselected package python3-mccabe. Preparing to unpack .../14-python3-mccabe_0.7.0-1_all.deb ... Unpacking python3-mccabe (0.7.0-1) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../15-python3-platformdirs_4.4.0-1_all.deb ... Unpacking python3-platformdirs (4.4.0-1) ... Selecting previously unselected package python3-tomlkit. Preparing to unpack .../16-python3-tomlkit_0.13.3-2_all.deb ... Unpacking python3-tomlkit (0.13.3-2) ... Selecting previously unselected package pylint. Preparing to unpack .../17-pylint_3.3.4-2_all.deb ... Unpacking pylint (3.3.4-2) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../18-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../19-python3-certifi_2025.1.31+ds-1_all.deb ... Unpacking python3-certifi (2025.1.31+ds-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../20-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../21-python3-charset-normalizer_3.4.3-1_amd64.deb ... Unpacking python3-charset-normalizer (3.4.3-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../22-python3-dateutil_2.9.0-4_all.deb ... Unpacking python3-dateutil (2.9.0-4) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../23-python3-pytz_2025.2-4_all.deb ... Unpacking python3-pytz (2025.2-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../24-python3-pandas-lib_2.3.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../25-python3-pandas_2.3.3+dfsg-2_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../26-python3-idna_3.10-1_all.deb ... Unpacking python3-idna (3.10-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../27-python3-urllib3_2.5.0-1_all.deb ... Unpacking python3-urllib3 (2.5.0-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../28-python3-requests_2.32.5+dfsg-1_all.deb ... Unpacking python3-requests (2.32.5+dfsg-1) ... Selecting previously unselected package python3-typechecks. Preparing to unpack .../29-python3-typechecks_0.1.0+ds-4_all.deb ... Unpacking python3-typechecks (0.1.0+ds-4) ... Selecting previously unselected package python3-datacache. Preparing to unpack .../30-python3-datacache_1.4.1-2_all.deb ... Unpacking python3-datacache (1.4.1-2) ... Selecting previously unselected package python3-gtfparse. Preparing to unpack .../31-python3-gtfparse_1.3.0+ds-2_all.deb ... Unpacking python3-gtfparse (1.3.0+ds-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../32-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../33-python3-typeguard_4.4.4-1_all.deb ... Unpacking python3-typeguard (4.4.4-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../34-python3-inflect_7.5.0-1_all.deb ... Unpacking python3-inflect (7.5.0-1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../35-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../36-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-memoized-property. Preparing to unpack .../37-python3-memoized-property_1.0.3-2_all.deb ... Unpacking python3-memoized-property (1.0.3-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../38-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) ... Selecting previously unselected package python3-serializable. Preparing to unpack .../39-python3-serializable_0.4.1+ds-2_all.deb ... Unpacking python3-serializable (0.4.1+ds-2) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../40-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (14.0.0) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up python3-numpy-dev:amd64 (1:2.3.3+ds-3) ... Setting up libgfortran5:amd64 (15.2.0-7) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up netbase (6.5) ... Setting up openssl (3.5.4-1) ... Setting up readline-common (8.3-3) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libreadline8t64:amd64 (8.3-3) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-dill (0.4.0-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.3.3+ds-3) ... Setting up python3-isort (7.0.0-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-astroid (3.3.8-2) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-mccabe (0.7.0-1) ... Setting up python3-tomlkit (0.13.3-2) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-typechecks (0.1.0+ds-4) ... Setting up python3-memoized-property (1.0.3-2) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-mypy-extensions (1.1.0-1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-2) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-pytz (2025.2-4) ... Setting up python3-serializable (0.4.1+ds-2) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-pandas (2.3.3+dfsg-2) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-datacache (1.4.1-2) ... Setting up python3-logilab-common (2.1.0-1) ... Setting up python3-gtfparse (1.3.0+ds-2) ... Setting up pylint (3.3.4-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m36.7s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m36.7s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpxjh24r_t/./tmp/piuparts-depends-dummy.deb 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m36.7s DUMP: piuparts-depends-dummy install ok installed 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m36.7s DUMP: (Reading database ... 10656 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'clean'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'clean'] 0m36.8s DEBUG: Recording chroot state 0m37.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m38.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m39.3s DEBUG: No broken symlinks as far as we can find. 0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy'] 0m40.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy', 'pyensembl'] 0m40.1s DUMP: pyensembl: Installed: (none) Candidate: 2.3.13-3 Version table: 2.3.13-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy', 'pyensembl'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', 'install', 'pyensembl=2.3.13-3'] 0m41.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: pyensembl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 36.9 kB of archives. After this operation, 211 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 pyensembl all 2.3.13-3 [36.9 kB] Fetched 36.9 kB in 0s (97.1 kB/s) Selecting previously unselected package pyensembl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10656 files and directories currently installed.) Preparing to unpack .../pyensembl_2.3.13-3_all.deb ... Unpacking pyensembl (2.3.13-3) ... Setting up pyensembl (2.3.13-3) ... 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', 'install', 'pyensembl=2.3.13-3'] 0m41.6s INFO: Running scripts post_install 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_install_exceptions'] 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_install_exceptions'] 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'systemd-tmpfiles', '--cat-config'] 0m41.6s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m41.6s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'systemd-tmpfiles', '--cat-config'] 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'remove', 'pyensembl'] 0m42.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsqlite3-0 media-types netbase pylint python3 python3-astroid python3-autocommand python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-dill python3-gtfparse python3-idna python3-inflect python3-isort python3-jaraco.context python3-jaraco.functools python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-more-itertools python3-mypy-extensions python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pkg-resources python3-platformdirs python3-pytz python3-requests python3-serializable python3-tomlkit python3-typechecks python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: pyensembl 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 211 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10690 files and directories currently installed.) Removing pyensembl (2.3.13-3) ... 0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'remove', 'pyensembl'] 0m42.4s INFO: Reinstalling after remove 0m42.4s INFO: Running scripts pre_install 0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_database-server'] 0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_database-server'] 0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_exceptions'] 0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_exceptions'] 0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_extras'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_extras'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy'] 0m42.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy', 'pyensembl'] 0m42.6s DUMP: pyensembl: Installed: (none) Candidate: 2.3.13-3 Version table: 2.3.13-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy', 'pyensembl'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', 'install', 'pyensembl=2.3.13-3'] 0m43.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: pyensembl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/36.9 kB of archives. After this operation, 211 kB of additional disk space will be used. Selecting previously unselected package pyensembl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10656 files and directories currently installed.) Preparing to unpack .../pyensembl_2.3.13-3_all.deb ... Unpacking pyensembl (2.3.13-3) ... Setting up pyensembl (2.3.13-3) ... 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', 'install', 'pyensembl=2.3.13-3'] 0m43.6s INFO: Running scripts post_install 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_install_exceptions'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_install_exceptions'] 0m43.6s INFO: Running scripts pre_install 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_database-server'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_database-server'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_exceptions'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_exceptions'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_extras'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_extras'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy'] 0m43.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy', 'pyensembl'] 0m43.7s DUMP: pyensembl: Installed: 2.3.13-3 Candidate: 2.3.13-3 Version table: *** 2.3.13-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-cache', 'policy', 'pyensembl'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', 'install', '--reinstall', 'pyensembl=2.3.13-3'] 0m44.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/36.9 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10690 files and directories currently installed.) Preparing to unpack .../pyensembl_2.3.13-3_all.deb ... Unpacking pyensembl (2.3.13-3) over (2.3.13-3) ... Setting up pyensembl (2.3.13-3) ... 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', '-y', 'install', '--reinstall', 'pyensembl=2.3.13-3'] 0m44.8s INFO: Running scripts post_install 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_install_exceptions'] 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_install_exceptions'] 0m44.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m45.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m46.7s DEBUG: No broken symlinks as far as we can find. 0m47.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', '-ac', '--ignore-obsolete'] 0m48.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', '-ac', '--ignore-obsolete'] 0m48.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m48.6s DUMP: 0.15.9~deb12u1 0m48.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m48.6s INFO: Running adequate version 0.15.9~deb12u1 now. 0m48.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'pyensembl'] 0m48.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'pyensembl'] 0m48.7s INFO: Running scripts pre_remove 0m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m49.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_exceptions'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_exceptions'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m49.7s DUMP: install ok installed apt apt 3.1.11 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-7 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.11 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblas3:amd64 libblas3 3.12.1-7 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libexpat1:amd64 libexpat1 2.7.3-1 install ok installed libffi8:amd64 libffi8 3.5.2-2 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-7 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-7 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblapack3:amd64 liblapack3 3.12.1-7 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.7-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.9-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.9-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-2 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 258.1-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258.1-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.41.2-4 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.5.4-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed procps procps 2:4.0.4-9 install ok installed pyensembl pyensembl 2.3.13-3 install ok installed pylint pylint 3.3.4-2 install ok installed python3 python3 3.13.7-1 install ok installed python3-astroid python3-astroid 3.3.8-2 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.3-1 install ok installed python3-datacache python3-datacache 1.4.1-2 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-dill python3-dill 0.4.0-1 install ok installed python3-gtfparse python3-gtfparse 1.3.0+ds-2 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-inflect python3-inflect 7.5.0-1 install ok installed python3-isort python3-isort 7.0.0-1 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-logilab-common python3-logilab-common 2.1.0-1 install ok installed python3-mccabe python3-mccabe 0.7.0-1 install ok installed python3-memoized-property python3-memoized-property 1.0.3-2 install ok installed python3-minimal python3-minimal 3.13.7-1 install ok installed python3-more-itertools python3-more-itertools 10.8.0-1 install ok installed python3-mypy-extensions python3-mypy-extensions 1.1.0-1 install ok installed python3-numpy python3-numpy 1:2.3.3+ds-3 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.3.3+ds-3 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-2 install ok installed python3-pkg-resources python3-pkg-resources 78.1.1-0.1 install ok installed python3-platformdirs python3-platformdirs 4.4.0-1 install ok installed python3-pytz python3-pytz 2025.2-4 install ok installed python3-requests python3-requests 2.32.5+dfsg-1 install ok installed python3-serializable python3-serializable 0.4.1+ds-2 install ok installed python3-tomlkit python3-tomlkit 0.13.3-2 install ok installed python3-typechecks python3-typechecks 0.1.0+ds-4 install ok installed python3-typeguard python3-typeguard 4.4.4-1 install ok installed python3-typing-extensions python3-typing-extensions 4.15.0-1 install ok installed python3-urllib3 python3-urllib3 2.5.0-1 install ok installed python3.13 python3.13 3.13.9-1 install ok installed python3.13-minimal python3.13-minimal 3.13.9-1 install ok installed readline-common readline-common 8.3-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.15-5 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed util-linux util-linux 2.41.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m49.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m49.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'pylint', 'python3', 'python3-astroid', 'python3-autocommand', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-dill', 'python3-gtfparse', 'python3-idna', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pytz', 'python3-requests', 'python3-serializable', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'pyensembl'] 0m54.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates libblas3 libexpat1 libffi8 libgfortran5 liblapack3 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsqlite3-0 media-types netbase openssl pyensembl pylint python3 python3-astroid python3-autocommand python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-dill python3-gtfparse python3-idna python3-inflect python3-isort python3-jaraco.context python3-jaraco.functools python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-more-itertools python3-mypy-extensions python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-pkg-resources python3-platformdirs python3-pytz python3-requests python3-serializable python3-tomlkit python3-typechecks python3-typeguard python3-typing-extensions python3-urllib3 python3.13 python3.13-minimal readline-common 0 upgraded, 0 newly installed, 54 to remove and 0 not upgraded. After this operation, 127 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10690 files and directories currently installed.) Removing pyensembl (2.3.13-3) ... Removing python3-datacache (1.4.1-2) ... Removing python3-requests (2.32.5+dfsg-1) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-gtfparse (1.3.0+ds-2) ... Removing python3-pandas (2.3.3+dfsg-2) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-2) ... Removing python3-numpy (1:2.3.3+ds-3) ... Removing liblapack3:amd64 (3.12.1-7) ... Removing libblas3:amd64 (3.12.1-7) ... Removing python3-charset-normalizer (3.4.3-1) ... Removing python3-pkg-resources (78.1.1-0.1) ... Removing python3-inflect (7.5.0-1) ... Removing python3-typeguard (4.4.4-1) ... Removing pylint (3.3.4-2) ... Removing python3-urllib3 (2.5.0-1) ... Removing python3-logilab-common (2.1.0-1) ... Removing libgfortran5:amd64 (15.2.0-7) ... Removing openssl (3.5.4-1) ... Removing python3-astroid (3.3.8-2) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-dill (0.4.0-1) ... Removing python3-idna (3.10-1) ... Removing python3-isort (7.0.0-1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-mccabe (0.7.0-1) ... Removing python3-memoized-property (1.0.3-2) ... Removing python3-more-itertools (10.8.0-1) ... Removing python3-mypy-extensions (1.1.0-1) ... Removing python3-numpy-dev:amd64 (1:2.3.3+ds-3) ... Removing python3-platformdirs (4.4.0-1) ... Removing python3-pytz (2025.2-4) ... Removing python3-serializable (0.4.1+ds-2) ... Removing python3-tomlkit (0.13.3-2) ... Removing python3-typechecks (0.1.0+ds-4) ... Removing python3-typing-extensions (4.15.0-1) ... Removing python3 (3.13.7-1) ... Removing python3.13 (3.13.9-1) ... Removing python3-minimal (3.13.7-1) ... Removing python3.13-minimal (3.13.9-1) ... Removing libexpat1:amd64 (2.7.3-1) ... Removing libpython3-stdlib:amd64 (3.13.7-1) ... Removing libpython3.13-stdlib:amd64 (3.13.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-2) ... Removing libpython3.13-minimal:amd64 (3.13.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-8) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-3) ... Processing triggers for libc-bin (2.41-12) ... 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'pylint', 'python3', 'python3-astroid', 'python3-autocommand', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-dill', 'python3-gtfparse', 'python3-idna', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pytz', 'python3-requests', 'python3-serializable', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'pyensembl'] 0m54.7s INFO: Running scripts post_remove 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_remove_cleanup'] 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_remove_cleanup'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_remove_exceptions'] 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_remove_exceptions'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'pylint', 'python3', 'python3-astroid', 'python3-autocommand', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-dill', 'python3-gtfparse', 'python3-idna', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pytz', 'python3-requests', 'python3-serializable', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m54.9s DUMP: (Reading database ... 5430 files and directories currently installed.) Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.9-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-3) ... dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.5.4-1) ... Purging configuration files for pylint (3.3.4-2) ... Purging configuration files for python3 (3.13.7-1) ... dpkg: warning: ignoring request to remove python3-astroid which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-datacache which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dill which isn't installed dpkg: warning: ignoring request to remove python3-gtfparse which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-isort which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-logilab-common which isn't installed dpkg: warning: ignoring request to remove python3-mccabe which isn't installed dpkg: warning: ignoring request to remove python3-memoized-property which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed Purging configuration files for python3-numpy (1:2.3.3+ds-3) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-serializable which isn't installed dpkg: warning: ignoring request to remove python3-tomlkit which isn't installed dpkg: warning: ignoring request to remove python3-typechecks which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.9-1) ... Purging configuration files for readline-common (8.3-3) ... 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', 'ca-certificates', 'libblas3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'liblapack3:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'media-types', 'netbase', 'openssl', 'pylint', 'python3', 'python3-astroid', 'python3-autocommand', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-dill', 'python3-gtfparse', 'python3-idna', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-pytz', 'python3-requests', 'python3-serializable', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', 'pyensembl'] 0m54.9s DUMP: dpkg: warning: ignoring request to remove pyensembl which isn't installed 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', 'pyensembl'] 0m54.9s INFO: Running scripts post_purge 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_purge_exceptions'] 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_purge_exceptions'] 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_purge_manual_cleanup'] 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_purge_manual_cleanup'] 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', '--pending'] 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--purge', '--pending'] 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--remove', '--pending'] 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg', '--remove', '--pending'] 0m54.9s INFO: Running scripts post_test 0m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_test_exceptions'] 0m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'tmp/scripts/post_test_exceptions'] 0m54.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m55.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m55.7s DEBUG: No broken symlinks as far as we can find. 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-divert', '--list'] 0m55.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'dpkg-divert', '--list'] 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'clean'] 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t', 'apt-get', 'clean'] 0m55.7s DEBUG: Recording chroot state 0m56.8s INFO: PASS: Installation and purging test. 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/shm'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/shm'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/console'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/console'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/ptmx'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/ptmx'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/pts'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/dev/pts'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/proc'] 0m57.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t/proc'] 0m57.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m57.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxjh24r_t'] 0m57.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxjh24r_t 0m57.5s INFO: PASS: All tests. 0m57.5s INFO: piuparts run ends. ret=0 End: 2025-10-26 21:26:15 GMT