Start: 2026-05-29 00:17:32 GMT Package: python3-anndata Source: python-anndata Version: 0.12.16-1 Installed-Size: 634 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-array-api-compat, python3-h5py (>= 3.8), python3-natsort, python3-numpy, python3-packaging, python3-pandas, python3-scipy, python3-scverse-misc, python3-zarr, python3:any Suggests: python3-openpyxl Description: annotated gene by sample numpy matrix Homepage: https://github.com/scverse/anndata Description-md5: 9846d1a2d0cd52a553b124fa581a832a Section: python Priority: optional Filename: pool/main/p/python-anndata/python3-anndata_0.12.16-1_all.deb Size: 124324 MD5sum: b068cecd17da6c52d67e2adbc9e2beb5 SHA256: c5ffa08535756d025fb56a02d9ff859527cb7a5f558c21129e6b839ae9dd39f6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-anndata=0.12.16-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-anndata=0.12.16-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-48-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.172-1 (2026-05-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpc7cx62tq 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpc7cx62tq 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpc7cx62tq/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpc7cx62tq/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'update'] 0m3.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [189 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.5 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7605 kB] Fetched 18.3 MB in 2s (8668 kB/s) Reading package lists... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'update'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libsystemd0 libudev1 sqv 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1228 kB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 261~rc2-1 [467 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 261~rc2-1 [137 kB] Get:3 http://deb.debian.org/debian sid/main amd64 sqv amd64 1.3.0-5+b2 [624 kB] Fetched 1228 kB in 0s (21.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../libsystemd0_261~rc2-1_amd64.deb ... Unpacking libsystemd0:amd64 (261~rc2-1) over (261~rc1-1) ... Setting up libsystemd0:amd64 (261~rc2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../libudev1_261~rc2-1_amd64.deb ... Unpacking libudev1:amd64 (261~rc2-1) over (261~rc1-1) ... Setting up libudev1:amd64 (261~rc2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../sqv_1.3.0-5+b2_amd64.deb ... Unpacking sqv (1.3.0-5+b2) over (1.3.0-5+b1) ... Setting up sqv (1.3.0-5+b2) ... Processing triggers for libc-bin (2.42-16) ... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s DUMP: c78f4b90dedee6ac1e860c7bc23410bc - 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s INFO: Running scripts post_setup 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_fake-essential'] 0m7.6s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1764 kB of archives. After this operation, 4956 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20251231-1+b1 [136 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-9+b2 [63.8 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-9+b2 [880 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12 [8996 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0053 [41.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.26 [599 kB] Preconfiguring packages ... Fetched 1764 kB in 0s (30.0 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4901 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20251231-1+b1_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20251231-1+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-9+b2_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9+b2) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-9+b2_amd64.deb ... Unpacking procps (2:4.0.4-9+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0053_all.deb ... Moving old data out of the way Unpacking ucf (3.0053) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.26_all.deb ... Unpacking dbconfig-common (2.0.26) ... Setting up libtext-charwidth-perl:amd64 (0.04-12) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-0:amd64 (2:4.0.4-9+b2) ... Setting up libncursesw6:amd64 (6.6+20251231-1+b1) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.4-9+b2) ... Setting up ucf (3.0053) ... Setting up dbconfig-common (2.0.26) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.42-16) ... 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_fake-essential'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_minimize'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_setup_zz_backports'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'clean'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'clean'] 0m7.7s DEBUG: Recording chroot state 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DUMP: install ok installed apt apt 3.3.1 install ok installed base-files base-files 14.0 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42-6 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-4 install ok installed gcc-16-base:amd64 gcc-16-base 16.1.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.1 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42-6 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-16 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-16 install ok installed libc6:amd64 libc6 2.42-16 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-1 install ok installed libmount1:amd64 libmount1 2.42-6 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b2 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b2 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9+b2 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.10-1 install ok installed libsemanage-common libsemanage-common 3.10-1 install ok installed libsemanage2:amd64 libsemanage2 3.10-1 install ok installed libsepol2:amd64 libsepol2 3.10-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.2-1 install ok installed libstdc++6:amd64 libstdc++6 16.1.0-1 install ok installed libsystemd0:amd64 libsystemd0 261~rc2-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1+b1 install ok installed libudev1:amd64 libudev1 261~rc2-1 install ok installed libuuid1:amd64 libuuid1 2.42-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b2 install ok installed login login 1:4.16.0-2+really2.42-6 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42-6 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1+b1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.2-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.40.1-7+b1 install ok installed procps procps 2:4.0.4-9+b2 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-5+b2 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026b-1 install ok installed ucf ucf 3.0053 install ok installed util-linux util-linux 2.42-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-divert', '--list'] 0m8.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-divert', '--list'] 0m8.3s INFO: Running scripts is_testable 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s INFO: apt-cache does not know about any of the requested packages 0m8.3s INFO: Running scripts pre_test 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_test_root_password'] 0m8.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_test_root_password'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 0m8.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 0m8.9s DEBUG: No broken symlinks as far as we can find. 0m8.9s INFO: Running scripts pre_install 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'show', '--no-all-versions', 'python3-anndata=0.12.16-1'] 0m9.8s DUMP: Package: python3-anndata Source: python-anndata Version: 0.12.16-1 Installed-Size: 634 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-array-api-compat, python3-h5py (>= 3.8), python3-natsort, python3-numpy, python3-packaging, python3-pandas, python3-scipy, python3-scverse-misc, python3-zarr, python3:any Suggests: python3-openpyxl Description-en: annotated gene by sample numpy matrix AnnData provides a scalable way of keeping track of data together with learned annotations. It is used within Scanpy, for which it was initially developed. Both packages have been introduced in Genome Biology (2018). Description-md5: 9846d1a2d0cd52a553b124fa581a832a Homepage: https://github.com/scverse/anndata Section: python Priority: optional Filename: pool/main/p/python-anndata/python3-anndata_0.12.16-1_all.deb Size: 124324 MD5sum: b068cecd17da6c52d67e2adbc9e2beb5 SHA256: c5ffa08535756d025fb56a02d9ff859527cb7a5f558c21129e6b839ae9dd39f6 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'show', '--no-all-versions', 'python3-anndata=0.12.16-1'] 0m9.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: python3-array-api-compat, python3-h5py (>= 3.8), python3-natsort, python3-numpy, python3-packaging, python3-pandas, python3-scipy, python3-scverse-misc, python3-zarr, python3:any Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m9.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp5amgesvm/piuparts-depends-dummy'] 0m9.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp5amgesvm/piuparts-depends-dummy.deb'. 0m9.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp5amgesvm/piuparts-depends-dummy'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.9s DUMP: 3.3.1 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp5amgesvm/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpc7cx62tq/tmp 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m39.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates docutils-common libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libunistring5 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core Suggested packages: gdbm-l10n krb5-doc krb5-user perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-charset-normalizer-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc python-natsort-doc www-browser gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pygments-doc ttf-bitstream-vera python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-stemmer dvipng dvisvgm fonts-freefont-otf imagemagick latexmk node-mathjax-full python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended texlive-latex-extra texlive-plain-generic python3-backports.zstd | python3-supported-min python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: libjson-xs-perl krb5-locales libldap-common publicsuffix libsasl2-modules python3-lxml libpaper-utils python3-pil python3-msgpack python3-pytest python3-zfpy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-html5lib python3-tables python3-numba g++ | c++-compiler python3-pooch make python3-aiohttp python3-botocore python3-fsspec python3-typer The following NEW packages will be installed: ca-certificates docutils-common libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libunistring5 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 piuparts-depends-dummy python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 78.2 MB/78.2 MB of archives. After this operation, 432 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [706 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.1-1 [117 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.9-3+b1 [25.4 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-4 [25.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.9-3+b1 [8348 B] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.9-3+b1 [25.4 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.4.4+ds-2 [136 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7+b2 [206 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.1.0-1 [878 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7+b2 [2546 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.4.4+ds-2 [7331 kB] Get:21 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.2-1 [1517 kB] Get:22 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260223 [158 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-7+b1 [4319 kB] Get:27 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-7+b1 [264 kB] Get:28 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:29 http://deb.debian.org/debian sid/main amd64 xml-core all 0.20 [20.0 kB] Get:30 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.22.4+dfsg-1 [128 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-2+b2 [29.0 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.22.1-1 [133 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-2.1 [30.9 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-2.1 [78.8 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:40 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-2.1 [335 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-2.1 [137 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.10+dfsg-1+b2 [188 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.69.0-1 [89.0 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.22.1-1 [23.3 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.5-1 [59.9 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-3 [244 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.20.0-2 [408 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.6+repack-2+b1 [1357 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.6+repack-2+b1 [63.3 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 9.1.0-4 [45.7 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:57 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b4 [10.1 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:60 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 7.2.0+ds1-1 [2543 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.17.0-2 [6052 kB] Get:62 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-accessible-pygments all 0.0.5-2 [1306 kB] Get:64 http://deb.debian.org/debian sid/main amd64 python3-alabaster all 1.0.0-1 [20.4 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-array-api-compat all 1.11.2-1 [37.8 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.17.0-2 [117 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-soupsieve all 2.8.4-1 [38.7 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-bs4 all 4.14.3-2 [118 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.5.20+ds-1 [9712 B] Get:71 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.7-1 [245 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-crc32c amd64 2.7.1-1+b1 [27.1 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-roman-numerals all 4.1.0-1 [9196 B] Get:78 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.22.4+dfsg-1 [433 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.3-1 [186 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-donfig all 0.8.1+dfsg-3 [18.3 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.16.0-3 [1521 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.16.0-3 [14.8 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.11-1 [41.7 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-imagesize all 2.0.0-1 [10.1 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 3.0.3-1+b1 [14.3 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-2 [106 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.4.0-2 [39.0 kB] Get:88 http://deb.debian.org/debian sid/main amd64 sphinx-common all 9.1.0-4 [699 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.0-1 [64.3 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.6.3-2 [118 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-snowballstemmer all 3.1.0-1 [62.1 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-sphinx all 9.1.0-4 [504 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-pydata-sphinx-theme all 0.17.1+dfsg-2 [919 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-numcodecs amd64 0.16.5+ds-6 [495 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.2-6 [31.2 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-3+b1 [6581 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.3.3+dfsg-3 [2935 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.17.1-4 [18.6 MB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-scverse-misc all 0.0.7-1 [13.1 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-zarr all 3.2.1-1 [204 kB] Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.46.1-9+b1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-9+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.12-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.12-1) ... 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Preparing to unpack .../65-python3-donfig_0.8.1+dfsg-3_all.deb ... Unpacking python3-donfig (0.8.1+dfsg-3) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../66-python3-h5py-serial_3.16.0-3_amd64.deb ... Unpacking python3-h5py-serial (3.16.0-3) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../67-python3-h5py_3.16.0-3_all.deb ... Unpacking python3-h5py (3.16.0-3) ... Selecting previously unselected package python3-idna. Preparing to unpack .../68-python3-idna_3.11-1_all.deb ... Unpacking python3-idna (3.11-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../69-python3-imagesize_2.0.0-1_all.deb ... Unpacking python3-imagesize (2.0.0-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../70-python3-markupsafe_3.0.3-1+b1_amd64.deb ... Unpacking python3-markupsafe (3.0.3-1+b1) ... Selecting previously unselected package python3-jinja2. 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Preparing to unpack .../77-python3-snowballstemmer_3.1.0-1_all.deb ... Unpacking python3-snowballstemmer (3.1.0-1) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../78-python3-sphinx_9.1.0-4_all.deb ... Unpacking python3-sphinx (9.1.0-4) ... Selecting previously unselected package python3-pydata-sphinx-theme. Preparing to unpack .../79-python3-pydata-sphinx-theme_0.17.1+dfsg-2_all.deb ... Unpacking python3-pydata-sphinx-theme (0.17.1+dfsg-2) ... Selecting previously unselected package python3-numcodecs. Preparing to unpack .../80-python3-numcodecs_0.16.5+ds-6_amd64.deb ... Unpacking python3-numcodecs (0.16.5+ds-6) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../81-python3-pytz_2025.2-6_all.deb ... Unpacking python3-pytz (2025.2-6) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../82-python3-pandas-lib_2.3.3+dfsg-3+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../83-python3-pandas_2.3.3+dfsg-3_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-3) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../84-python3-scipy_1.17.1-4_amd64.deb ... Unpacking python3-scipy (1.17.1-4) ... Selecting previously unselected package python3-scverse-misc. Preparing to unpack .../85-python3-scverse-misc_0.0.7-1_all.deb ... Unpacking python3-scverse-misc (0.0.7-1) ... Selecting previously unselected package python3-zarr. Preparing to unpack .../86-python3-zarr_3.2.1-1_all.deb ... Unpacking python3-zarr (3.2.1-1) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../87-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (14.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libbrotli1:amd64 (1.2.0-3) ... Setting up libsqlite3-0:amd64 (3.46.1-9+b1) ... Setting up libnghttp2-14:amd64 (1.69.0-1) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up libcom-err2:amd64 (1.47.4-1) ... Setting up node-fortawesome-fontawesome-free (7.2.0+ds1-1) ... Setting up python-babel-localedata (2.17.0-2) ... Setting up libsnappy1v5:amd64 (1.2.2-2+b2) ... Setting up libkrb5support0:amd64 (1.22.1-2.1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up libblas3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b4) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up python3-numpy-dev:amd64 (1:2.4.4+ds-2) ... Setting up libk5crypto3:amd64 (1.22.1-2.1) ... Setting up libjs-sphinxdoc (9.1.0-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up libgfortran5:amd64 (16.1.0-1) ... Setting up libnghttp3-9:amd64 (1.15.0-1) ... Setting up libffi8:amd64 (3.5.2-4) ... Setting up perl-modules-5.40 (5.40.1-7) ... Setting up libblosc1:amd64 (1.21.5+ds-2+b2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.22.1-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libkrb5-3:amd64 (1.22.1-2.1) ... Setting up libssh2-1t64:amd64 (1.11.1-3) ... Setting up openssl (3.6.2-1) ... Setting up readline-common (8.3-4) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b2) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up liblapack3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libperl5.40:amd64 (5.40.1-7+b1) ... Setting up ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 144 added, 0 removed; done. Setting up perl (5.40.1-7+b1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2.1) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.22.1-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up xml-core (0.20) ... Setting up libjson-perl (4.10000-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.12-1) ... Setting up libpython3-stdlib:amd64 (3.13.9-3+b1) ... Setting up python3.13 (3.13.12-1) ... Setting up libpsl5t64:amd64 (0.21.5-1) ... Setting up python3 (3.13.9-3+b1) ... Setting up python3-markupsafe (3.0.3-1+b1) ... Setting up python3-natsort (8.4.0-2) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-2) ... Setting up python3-pygments (2.19.2+dfsg-1) ... Setting up python3-packaging (26.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-accessible-pygments (0.0.5-2) ... Setting up python3-certifi (2026.5.20+ds-1) ... Setting up python3-snowballstemmer (3.1.0-1) ... Setting up sphinx-common (9.1.0-4) ... Setting up python3-idna (3.11-1) ... Setting up python3-typing-extensions (4.15.0-2) ... Setting up python3-numpy (1:2.4.4+ds-2) ... Setting up python3-crc32c (2.7.1-1+b1) ... Setting up python3-urllib3 (2.6.3-2) ... Setting up python3-roman-numerals (4.1.0-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-scverse-misc (0.0.7-1) ... Setting up python3-soupsieve (2.8.4-1) ... Setting up python3-imagesize (2.0.0-1) ... Setting up python3-scipy (1.17.1-4) ... Setting up libcurl4t64:amd64 (8.20.0-2) ... Setting up python3-babel (2.17.0-2) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.7-1) ... Setting up python3-alabaster (1.0.0-1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Setting up python3-array-api-compat (1.11.2-1) ... Setting up python3-yaml (6.0.3-1) ... Setting up python3-pytz (2025.2-6) ... Setting up python3-bs4 (4.14.3-2) ... Setting up python3-pandas (2.3.3+dfsg-3) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Setting up python3-donfig (0.8.1+dfsg-3) ... Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Setting up python3-h5py-serial (3.16.0-3) ... Setting up python3-h5py (3.16.0-3) ... Processing triggers for libc-bin (2.42-16) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.4+dfsg-1) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.4+dfsg-1) ... Setting up python3-sphinx (9.1.0-4) ... Setting up python3-pydata-sphinx-theme (0.17.1+dfsg-2) ... Setting up python3-numcodecs (0.16.5+ds-6) ... Setting up python3-zarr (3.2.1-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m39.4s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m39.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpc7cx62tq/./tmp/piuparts-depends-dummy.deb 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m39.4s DUMP: piuparts-depends-dummy install ok installed 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m39.4s DUMP: (Reading database ... 23836 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'clean'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'clean'] 0m39.4s DEBUG: Recording chroot state 0m40.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 0m41.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 0m43.3s DEBUG: No broken symlinks as far as we can find. 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy'] 0m44.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy', 'python3-anndata'] 0m44.0s DUMP: python3-anndata: Installed: (none) Candidate: 0.12.16-1 Version table: 0.12.16-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy', 'python3-anndata'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', 'install', 'python3-anndata=0.12.16-1'] 0m45.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: python3-openpyxl The following NEW packages will be installed: python3-anndata 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 124 kB of archives. After this operation, 649 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 python3-anndata all 0.12.16-1 [124 kB] Fetched 124 kB in 0s (3293 kB/s) Selecting previously unselected package python3-anndata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23836 files and directories currently installed.) Preparing to unpack .../python3-anndata_0.12.16-1_all.deb ... Unpacking python3-anndata (0.12.16-1) ... Setting up python3-anndata (0.12.16-1) ... 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', 'install', 'python3-anndata=0.12.16-1'] 0m45.1s INFO: Running scripts post_install 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_install_exceptions'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_install_exceptions'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'systemd-tmpfiles', '--cat-config'] 0m45.1s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m45.1s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'systemd-tmpfiles', '--cat-config'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'remove', 'python3-anndata'] 0m46.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: docutils-common libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libyaml-0-2 media-types node-fortawesome-fontawesome-free python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: python3-anndata 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 649 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23908 files and directories currently installed.) Removing python3-anndata (0.12.16-1) ... 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'remove', 'python3-anndata'] 0m46.3s INFO: Reinstalling after remove 0m46.3s INFO: Running scripts pre_install 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_database-server'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_database-server'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_exceptions'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_exceptions'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_extras'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_extras'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy'] 0m46.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy', 'python3-anndata'] 0m46.5s DUMP: python3-anndata: Installed: (none) Candidate: 0.12.16-1 Version table: 0.12.16-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy', 'python3-anndata'] 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', 'install', 'python3-anndata=0.12.16-1'] 0m47.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: python3-openpyxl The following NEW packages will be installed: python3-anndata 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/124 kB of archives. After this operation, 649 kB of additional disk space will be used. Selecting previously unselected package python3-anndata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23836 files and directories currently installed.) Preparing to unpack .../python3-anndata_0.12.16-1_all.deb ... Unpacking python3-anndata (0.12.16-1) ... Setting up python3-anndata (0.12.16-1) ... 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', 'install', 'python3-anndata=0.12.16-1'] 0m47.5s INFO: Running scripts post_install 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_install_exceptions'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_install_exceptions'] 0m47.5s INFO: Running scripts pre_install 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_database-server'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_database-server'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_exceptions'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_extras'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_extras'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy'] 0m47.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy', 'python3-anndata'] 0m47.7s DUMP: python3-anndata: Installed: 0.12.16-1 Candidate: 0.12.16-1 Version table: *** 0.12.16-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-cache', 'policy', 'python3-anndata'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', 'install', '--reinstall', 'python3-anndata=0.12.16-1'] 0m48.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/124 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23908 files and directories currently installed.) Preparing to unpack .../python3-anndata_0.12.16-1_all.deb ... Unpacking python3-anndata (0.12.16-1) over (0.12.16-1) ... Setting up python3-anndata (0.12.16-1) ... 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', '-y', 'install', '--reinstall', 'python3-anndata=0.12.16-1'] 0m48.9s INFO: Running scripts post_install 0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_install_exceptions'] 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_install_exceptions'] 0m48.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 0m50.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 0m52.3s DEBUG: No broken symlinks as far as we can find. 0m53.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', '-ac', '--ignore-obsolete'] 0m55.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', '-ac', '--ignore-obsolete'] 0m55.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.7s DUMP: 0.15.9~deb12u1 0m55.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.7s INFO: Running adequate version 0.15.9~deb12u1 now. 0m55.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'python3-anndata'] 0m55.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'python3-anndata'] 0m55.8s INFO: Running scripts pre_remove 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_exceptions'] 0m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_exceptions'] 0m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.6s DUMP: install ok installed apt apt 3.3.1 install ok installed base-files base-files 14.0 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42-6 install ok installed ca-certificates ca-certificates 20260223 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed docutils-common docutils-common 0.22.4+dfsg-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-4 install ok installed gcc-16-base:amd64 gcc-16-base 16.1.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.1 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-7+b2 install ok installed libblkid1:amd64 libblkid1 2.42-6 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-16 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-16 install ok installed libc6:amd64 libc6 2.42-16 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libcurl4t64:amd64 libcurl4t64 8.20.0-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.8.1-1 install ok installed libffi8:amd64 libffi8 3.5.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 16.1.0-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2.1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.6+repack-2+b1 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.6+repack-2+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libjs-sphinxdoc libjs-sphinxdoc 9.1.0-4 install ok installed libjson-perl libjson-perl 4.10000-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2.1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2.1 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2.1 install ok installed liblapack3:amd64 liblapack3 3.12.1-7+b2 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1+b2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzf1:amd64 liblzf1 3.6-4+b4 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-1 install ok installed libmount1:amd64 libmount1 2.42-6 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1+b1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.69.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.15.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.22.1-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.22.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b2 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b2 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-7+b1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9+b2 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.5-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3+b1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.12-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.12-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.10-1 install ok installed libsemanage-common libsemanage-common 3.10-1 install ok installed libsemanage2:amd64 libsemanage2 3.10-1 install ok installed libsepol2:amd64 libsepol2 3.10-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42-6 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-2+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9+b1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-3 install ok installed libssl3t64:amd64 libssl3t64 3.6.2-1 install ok installed libstdc++6:amd64 libstdc++6 16.1.0-1 install ok installed libsystemd0:amd64 libsystemd0 261~rc2-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1+b1 install ok installed libudev1:amd64 libudev1 261~rc2-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b2 install ok installed login login 1:4.16.0-2+really2.42-6 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42-6 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1+b1 install ok installed netbase netbase 6.5 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 7.2.0+ds1-1 install ok installed openssl openssl 3.6.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.2-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl perl 5.40.1-7+b1 install ok installed perl-base perl-base 5.40.1-7+b1 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-7 install ok installed procps procps 2:4.0.4-9+b2 install ok installed python-babel-localedata python-babel-localedata 2.17.0-2 install ok installed python3 python3 3.13.9-3+b1 install ok installed python3-accessible-pygments python3-accessible-pygments 0.0.5-2 install ok installed python3-alabaster python3-alabaster 1.0.0-1 install ok installed python3-anndata python3-anndata 0.12.16-1 install ok installed python3-array-api-compat python3-array-api-compat 1.11.2-1 install ok installed python3-babel python3-babel 2.17.0-2 install ok installed python3-bs4 python3-bs4 4.14.3-2 install ok installed python3-certifi python3-certifi 2026.5.20+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-1 install ok installed python3-crc32c python3-crc32c 2.7.1-1+b1 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-docutils python3-docutils 0.22.4+dfsg-1 install ok installed python3-donfig python3-donfig 0.8.1+dfsg-3 install ok installed python3-h5py python3-h5py 3.16.0-3 install ok installed python3-h5py-serial python3-h5py-serial 3.16.0-3 install ok installed python3-idna python3-idna 3.11-1 install ok installed python3-imagesize python3-imagesize 2.0.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-2 install ok installed python3-markupsafe python3-markupsafe 3.0.3-1+b1 install ok installed python3-minimal python3-minimal 3.13.9-3+b1 install ok installed python3-natsort python3-natsort 8.4.0-2 install ok installed python3-numcodecs python3-numcodecs 0.16.5+ds-6 install ok installed python3-numpy python3-numpy 1:2.4.4+ds-2 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.4+ds-2 install ok installed python3-packaging python3-packaging 26.0-1 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-3 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-3+b1 install ok installed python3-pydata-sphinx-theme python3-pydata-sphinx-theme 0.17.1+dfsg-2 install ok installed python3-pygments python3-pygments 2.19.2+dfsg-1 install ok installed python3-pytz python3-pytz 2025.2-6 install ok installed python3-requests python3-requests 2.32.5+dfsg-1 install ok installed python3-roman-numerals python3-roman-numerals 4.1.0-1 install ok installed python3-scipy python3-scipy 1.17.1-4 install ok installed python3-scverse-misc python3-scverse-misc 0.0.7-1 install ok installed python3-snowballstemmer python3-snowballstemmer 3.1.0-1 install ok installed python3-soupsieve python3-soupsieve 2.8.4-1 install ok installed python3-sphinx python3-sphinx 9.1.0-4 install ok installed python3-typing-extensions python3-typing-extensions 4.15.0-2 install ok installed python3-urllib3 python3-urllib3 2.6.3-2 install ok installed python3-yaml python3-yaml 6.0.3-1 install ok installed python3-zarr python3-zarr 3.2.1-1 install ok installed python3.13 python3.13 3.13.12-1 install ok installed python3.13-minimal python3.13-minimal 3.13.12-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sphinx-common sphinx-common 9.1.0-4 install ok installed sqv sqv 1.3.0-5+b2 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026b-1 install ok installed ucf ucf 3.0053 install ok installed util-linux util-linux 2.42-6 install ok installed xml-core xml-core 0.20 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core', 'python3-anndata'] 1m3.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates docutils-common libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libunistring5 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-anndata python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-scverse-misc python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core 0 upgraded, 0 newly installed, 101 to remove and 0 not upgraded. After this operation, 432 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23908 files and directories currently installed.) Removing python3-anndata (0.12.16-1) ... Removing python3-zarr (3.2.1-1) ... Removing python3-numcodecs (0.16.5+ds-6) ... Removing python3-pydata-sphinx-theme (0.17.1+dfsg-2) ... Removing python3-sphinx (9.1.0-4) ... Removing python3-requests (2.32.5+dfsg-1) ... Removing python3-certifi (2026.5.20+ds-1) ... Removing ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-docutils (0.22.4+dfsg-1) ... Removing docutils-common (0.22.4+dfsg-1) ... Removing python3-scipy (1.17.1-4) ... Removing python3-pandas (2.3.3+dfsg-3) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Removing python3-h5py (3.16.0-3) ... Removing python3-h5py-serial (3.16.0-3) ... Removing python3-numpy (1:2.4.4+ds-2) ... Removing liblapack3:amd64 (3.12.1-7+b2) ... Removing libblas3:amd64 (3.12.1-7+b2) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Removing libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Removing libcurl4t64:amd64 (8.20.0-2) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing libgssapi-krb5-2:amd64 (1.22.1-2.1) ... Removing libkrb5-3:amd64 (1.22.1-2.1) ... Removing libcom-err2:amd64 (1.47.4-1) ... Removing python3-donfig (0.8.1+dfsg-3) ... Removing python3-yaml (6.0.3-1) ... Removing python3-bs4 (4.14.3-2) ... Removing python3-soupsieve (2.8.4-1) ... Removing python3-scverse-misc (0.0.7-1) ... Removing python3-crc32c (2.7.1-1+b1) ... Removing python3-snowballstemmer (3.1.0-1) ... Removing sphinx-common (9.1.0-4) ... Removing libjson-perl (4.10000-1) ... Removing perl (5.40.1-7+b1) ... Removing libperl5.40:amd64 (5.40.1-7+b1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgfortran5:amd64 (16.1.0-1) ... Removing libpsl5t64:amd64 (0.21.5-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjs-sphinxdoc (9.1.0-4) ... Removing libk5crypto3:amd64 (1.22.1-2.1) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-2.1) ... Removing libldap2:amd64 (2.6.10+dfsg-1+b2) ... Removing liblzf1:amd64 (3.6-4+b4) ... Removing libnghttp2-14:amd64 (1.69.0-1) ... Removing libnghttp3-9:amd64 (1.15.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.22.1-1) ... Removing libngtcp2-16:amd64 (1.22.1-1) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libsnappy1v5:amd64 (1.2.2-2+b2) ... Removing libssh2-1t64:amd64 (1.11.1-3) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing node-fortawesome-fontawesome-free (7.2.0+ds1-1) ... Removing openssl (3.6.2-1) ... Removing perl-modules-5.40 (5.40.1-7) ... Removing python3-babel (2.17.0-2) ... Removing python-babel-localedata (2.17.0-2) ... Removing python3-accessible-pygments (0.0.5-2) ... Removing python3-alabaster (1.0.0-1) ... Removing python3-array-api-compat (1.11.2-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.7-1) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-decorator (5.2.1-2) ... Removing python3-defusedxml (0.7.1-3) ... Removing python3-idna (3.11-1) ... Removing python3-imagesize (2.0.0-1) ... Removing python3-jinja2 (3.1.6-2) ... Removing python3-markupsafe (3.0.3-1+b1) ... Removing python3-natsort (8.4.0-2) ... Removing python3-numpy-dev:amd64 (1:2.4.4+ds-2) ... Removing python3-packaging (26.0-1) ... Removing python3-pygments (2.19.2+dfsg-1) ... Removing python3-pytz (2025.2-6) ... Removing python3-roman-numerals (4.1.0-1) ... Removing python3-typing-extensions (4.15.0-2) ... Removing python3-urllib3 (2.6.3-2) ... Removing xml-core (0.20) ... Removing sgml-base (1.31+nmu1) ... Removing python3 (3.13.9-3+b1) ... Removing python3.13 (3.13.12-1) ... Removing python3-minimal (3.13.9-3+b1) ... Removing python3.13-minimal (3.13.12-1) ... Removing libexpat1:amd64 (2.8.1-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3+b1) ... Removing libpython3.13-stdlib:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-4) ... Removing libpython3.13-minimal:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-9+b1) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.42-16) ... 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core', 'python3-anndata'] 1m3.7s INFO: Running scripts post_remove 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_remove_cleanup'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_remove_cleanup'] 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_remove_exceptions'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_remove_exceptions'] 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core'] 1m3.9s DUMP: (Reading database ... 5457 files and directories currently installed.) Purging configuration files for ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for docutils-common (0.22.4+dfsg-1) ... dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libblosc1 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-2.1) ... dpkg: warning: ignoring request to remove libhdf5-310 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which is not installed dpkg: warning: ignoring request to remove libjson-perl which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblzf1 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libperl5.40 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.12-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove node-fortawesome-fontawesome-free which is not installed Purging configuration files for openssl (3.6.2-1) ... Purging configuration files for perl (5.40.1-7+b1) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which is not installed dpkg: warning: ignoring request to remove python-babel-localedata which is not installed Purging configuration files for python3 (3.13.9-3+b1) ... dpkg: warning: ignoring request to remove python3-accessible-pygments which is not installed dpkg: warning: ignoring request to remove python3-alabaster which is not installed dpkg: warning: ignoring request to remove python3-array-api-compat which is not installed dpkg: warning: ignoring request to remove python3-babel which is not installed dpkg: warning: ignoring request to remove python3-bs4 which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-crc32c which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-defusedxml which is not installed dpkg: warning: ignoring request to remove python3-docutils which is not installed dpkg: warning: ignoring request to remove python3-donfig which is not installed dpkg: warning: ignoring request to remove python3-h5py which is not installed dpkg: warning: ignoring request to remove python3-h5py-serial which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-imagesize which is not installed dpkg: warning: ignoring request to remove python3-jinja2 which is not installed dpkg: warning: ignoring request to remove python3-markupsafe which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-natsort which is not installed dpkg: warning: ignoring request to remove python3-numcodecs which is not installed Purging configuration files for python3-numpy (1:2.4.4+ds-2) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pydata-sphinx-theme which is not installed dpkg: warning: ignoring request to remove python3-pygments which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-roman-numerals which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3-scverse-misc which is not installed dpkg: warning: ignoring request to remove python3-snowballstemmer which is not installed dpkg: warning: ignoring request to remove python3-soupsieve which is not installed dpkg: warning: ignoring request to remove python3-sphinx which is not installed dpkg: warning: ignoring request to remove python3-typing-extensions which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3-zarr which is not installed dpkg: warning: ignoring request to remove python3.13 which is not installed Purging configuration files for python3.13-minimal (3.13.12-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sgml-base (1.31+nmu1) ... dpkg: warning: ignoring request to remove sphinx-common which is not installed Purging configuration files for xml-core (0.20) ... 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-scverse-misc', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', 'python3-anndata'] 1m3.9s DUMP: dpkg: warning: ignoring request to remove python3-anndata which is not installed 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', 'python3-anndata'] 1m3.9s INFO: Running scripts post_purge 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_purge_exceptions'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_purge_exceptions'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_purge_manual_cleanup'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_purge_manual_cleanup'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', '--pending'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--purge', '--pending'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--remove', '--pending'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg', '--remove', '--pending'] 1m3.9s INFO: Running scripts post_test 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_test_exceptions'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'tmp/scripts/post_test_exceptions'] 1m3.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 1m4.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 1m4.6s DEBUG: No broken symlinks as far as we can find. 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-divert', '--list'] 1m4.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'dpkg-divert', '--list'] 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'clean'] 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq', 'apt-get', 'clean'] 1m4.6s DEBUG: Recording chroot state 1m5.8s INFO: PASS: Installation and purging test. 1m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/shm'] 1m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/shm'] 1m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/console'] 1m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/console'] 1m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/ptmx'] 1m6.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/ptmx'] 1m6.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/pts'] 1m6.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/dev/pts'] 1m6.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/proc'] 1m6.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq/proc'] 1m6.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 1m6.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpc7cx62tq'] 1m6.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpc7cx62tq 1m6.3s INFO: PASS: All tests. 1m6.3s INFO: piuparts run ends. ret=0 End: 2026-05-29 00:18:38 GMT