Start: 2025-11-30 21:54:01 GMT Package: python3-anndata Source: python-anndata Version: 0.12.6-1 Installed-Size: 624 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-array-api-compat, python3-h5py (>= 3.8), python3-natsort, python3-numpy, python3-packaging, python3-pandas, python3-scipy, python3-zarr, python3:any Suggests: python3-openpyxl Description: annotated gene by sample numpy matrix Homepage: https://github.com/theislab/anndata Description-md5: 9846d1a2d0cd52a553b124fa581a832a Section: python Priority: optional Filename: pool/main/p/python-anndata/python3-anndata_0.12.6-1_all.deb Size: 122816 MD5sum: 193b0737c6ecf349940a7c108ad28d1b SHA256: 022d4259bb8d2f30f2099c17c0c4313a4656848e9f28b43fe5877b14bf3c3df1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-anndata=0.12.6-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-anndata=0.12.6-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-41-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.158-1 (2025-11-09) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmphyvj6syh 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmphyvj6syh 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmphyvj6syh/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmphyvj6syh/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'update'] 0m4.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [176 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7454 kB] Fetched 17.9 MB in 3s (5484 kB/s) Reading package lists... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'update'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-yf', 'dist-upgrade'] 0m4.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-yf', 'dist-upgrade'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s DUMP: 030cf38607c9860baee3cc6596017397 - 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s INFO: Running scripts post_setup 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_dummy_users'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_fake-essential'] 0m7.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... init-system-helpers is already the newest version (1.69). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1777 kB of archives. After this operation, 4978 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20251123-1 [136 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0052 [43.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.25 [604 kB] Preconfiguring packages ... Fetched 1777 kB in 0s (29.4 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4881 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20251123-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20251123-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.25_all.deb ... Unpacking dbconfig-common (2.0.25) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libncursesw6:amd64 (6.5+20251123-1) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.4-9) ... Setting up ucf (3.0052) ... Setting up dbconfig-common (2.0.25) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-12) ... 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_fake-essential'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'clean'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'clean'] 0m8.0s DEBUG: Recording chroot state 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DUMP: install ok installed apt apt 3.1.12 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-9 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-9 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-6 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libncursesw6:amd64 libncursesw6 6.5+20251123-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-4 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 259~rc2-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20251123-1 install ok installed libudev1:amd64 libudev1 259~rc2-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-4 install ok installed ncurses-base ncurses-base 6.5+20251123-1 install ok installed ncurses-bin ncurses-bin 6.5+20251123-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl-base perl-base 5.40.1-7 install ok installed procps procps 2:4.0.4-9 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed util-linux util-linux 2.41.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-divert', '--list'] 0m8.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-divert', '--list'] 0m8.6s INFO: Running scripts is_testable 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/is_testable_uninstallable'] 0m8.6s INFO: apt-cache does not know about any of the requested packages 0m8.6s INFO: Running scripts pre_test 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_test_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_test_root_password'] 0m8.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_test_root_password'] 0m8.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 0m9.8s DEBUG: No broken symlinks as far as we can find. 0m9.8s INFO: Running scripts pre_install 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_extras'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_extras'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'show', '--no-all-versions', 'python3-anndata=0.12.6-1'] 0m10.8s DUMP: Package: python3-anndata Source: python-anndata Version: 0.12.6-1 Installed-Size: 624 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-array-api-compat, python3-h5py (>= 3.8), python3-natsort, python3-numpy, python3-packaging, python3-pandas, python3-scipy, python3-zarr, python3:any Suggests: python3-openpyxl Description-en: annotated gene by sample numpy matrix AnnData provides a scalable way of keeping track of data together with learned annotations. It is used within Scanpy, for which it was initially developed. Both packages have been introduced in Genome Biology (2018). Description-md5: 9846d1a2d0cd52a553b124fa581a832a Homepage: https://github.com/theislab/anndata Section: python Priority: optional Filename: pool/main/p/python-anndata/python3-anndata_0.12.6-1_all.deb Size: 122816 MD5sum: 193b0737c6ecf349940a7c108ad28d1b SHA256: 022d4259bb8d2f30f2099c17c0c4313a4656848e9f28b43fe5877b14bf3c3df1 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'show', '--no-all-versions', 'python3-anndata=0.12.6-1'] 0m10.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: python3-array-api-compat, python3-h5py (>= 3.8), python3-natsort, python3-numpy, python3-packaging, python3-pandas, python3-scipy, python3-zarr, python3:any Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m10.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpmidcsskx/piuparts-depends-dummy'] 0m10.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpmidcsskx/piuparts-depends-dummy.deb'. 0m10.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpmidcsskx/piuparts-depends-dummy'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.8s DUMP: 3.1.12 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpmidcsskx/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmphyvj6syh/tmp 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m39.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates docutils-common libaec0 libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libtasn1-6 libunistring5 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core Suggested packages: gdbm-l10n gnutls-bin krb5-doc krb5-user perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-charset-normalizer-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc python-natsort-doc www-browser gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pygments-doc ttf-bitstream-vera python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-stemmer dvipng dvisvgm fonts-freefont-otf imagemagick latexmk node-mathjax-full python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended texlive-latex-extra texlive-plain-generic python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: libjson-xs-perl krb5-locales libldap-common publicsuffix libsasl2-modules python3-lxml libpaper-utils python3-pil python3-msgpack python3-pytest python3-zfpy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-html5lib python3-tables python3-numba g++ | c++-compiler python3-pooch make python3-aiohttp python3-botocore python3-fsspec python3-rich python3-typer The following NEW packages will be installed: ca-certificates docutils-common libaec0 libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libtasn1-6 libunistring5 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 piuparts-depends-dummy python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. Need to get 71.1 MB/71.1 MB of archives. After this operation, 350 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [694 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-3 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-2 [139 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-9 [862 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.3.5+ds-2 [5096 kB] Get:21 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get:22 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20250419 [162 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1 [78.5 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1 [52.8 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-7 [4317 kB] Get:27 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-7 [267 kB] Get:28 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:29 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:30 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.22.3+dfsg-1 [128 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.7 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-2 [49.3 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:41 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.10-1 [444 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.11-3 [1509 kB] Get:54 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.17.0-3 [409 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get:58 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-4 [1448 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [72.6 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 8.2.3-10 [27.7 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:62 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-7 [248 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:65 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1521 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-accessible-pygments all 0.0.5-2 [1306 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-array-api-compat all 1.11.2-1 [37.8 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.17.0-1 [117 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-soupsieve all 2.7-2 [39.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-bs4 all 4.14.2-1 [116 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.11.12+ds-1 [10.0 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.4-1 [133 kB] Get:78 http://deb.debian.org/debian sid/main amd64 python3-crc32c amd64 2.7.1-1 [26.3 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get:83 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.22.3+dfsg-1 [432 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.2-2 [137 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-donfig all 0.8.1+dfsg-3 [18.3 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.15.1-3 [976 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.15.1-3 [18.8 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get:90 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 3.0.3-1 [13.8 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.4.0-1 [38.9 kB] Get:93 http://deb.debian.org/debian sid/main amd64 sphinx-common all 8.2.3-10 [619 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-sphinx all 8.2.3-10 [477 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-pydata-sphinx-theme all 0.16.1+dfsg-4 [903 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-numcodecs amd64 0.16.5+ds-1 [356 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.2-4 [31.8 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-2 [4362 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.3.3+dfsg-2 [2935 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.16.3-1 [15.7 MB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-zarr all 3.1.5-1 [178 kB] Preconfiguring packages ... 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Unpacking python3-requests (2.32.5+dfsg-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../82-python3-snowballstemmer_3.0.1-1_all.deb ... Unpacking python3-snowballstemmer (3.0.1-1) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../83-python3-sphinx_8.2.3-10_all.deb ... Unpacking python3-sphinx (8.2.3-10) ... Selecting previously unselected package python3-pydata-sphinx-theme. Preparing to unpack .../84-python3-pydata-sphinx-theme_0.16.1+dfsg-4_all.deb ... Unpacking python3-pydata-sphinx-theme (0.16.1+dfsg-4) ... Selecting previously unselected package python3-numcodecs. Preparing to unpack .../85-python3-numcodecs_0.16.5+ds-1_amd64.deb ... Unpacking python3-numcodecs (0.16.5+ds-1) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../86-python3-pytz_2025.2-4_all.deb ... Unpacking python3-pytz (2025.2-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../87-python3-pandas-lib_2.3.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../88-python3-pandas_2.3.3+dfsg-2_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../89-python3-scipy_1.16.3-1_amd64.deb ... Unpacking python3-scipy (1.16.3-1) ... Selecting previously unselected package python3-zarr. Preparing to unpack .../90-python3-zarr_3.1.5-1_all.deb ... Unpacking python3-zarr (3.1.5-1) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../91-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (14.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libgdbm6t64:amd64 (1.26-1) ... Setting up libgdbm-compat4t64:amd64 (1.26-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libqhull-r8.0:amd64 (2020.2-7) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... Setting up libaec0:amd64 (1.1.4-2) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up libsnappy1v5:amd64 (1.2.2-2) ... Setting up libkrb5support0:amd64 (1.22.1-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-2) ... Setting up libk5crypto3:amd64 (1.22.1-2) ... Setting up libjs-sphinxdoc (8.2.3-10) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up libgfortran5:amd64 (15.2.0-9) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up perl-modules-5.40 (5.40.1-7) ... Setting up libblosc1:amd64 (1.21.5+ds-2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.5.4-1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libsz2:amd64 (1.1.4-2) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libperl5.40:amd64 (5.40.1-7) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up perl (5.40.1-7) ... Setting up libp11-kit0:amd64 (0.25.10-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up xml-core (0.19) ... Setting up libjson-perl (4.10000-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libgnutls30t64:amd64 (3.8.11-3) ... Setting up python3.13 (3.13.9-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up python3-markupsafe (3.0.3-1) ... Setting up python3-natsort (8.4.0-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-accessible-pygments (0.0.5-2) ... Setting up python3-certifi (2025.11.12+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up sphinx-common (8.2.3-10) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.3.5+ds-2) ... Setting up python3-crc32c (2.7.1-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-soupsieve (2.7-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-scipy (1.16.3-1) ... Setting up libcurl4t64:amd64 (8.17.0-3) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.4-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-2) ... Setting up python3-array-api-compat (1.11.2-1) ... Setting up python3-yaml (6.0.2-2) ... Setting up python3-pytz (2025.2-4) ... Setting up python3-bs4 (4.14.2-1) ... Setting up python3-pandas (2.3.3+dfsg-2) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... Setting up python3-donfig (0.8.1+dfsg-3) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... Setting up python3-h5py-serial (3.15.1-3) ... Setting up python3-h5py (3.15.1-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.3+dfsg-1) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.3+dfsg-1) ... Setting up python3-sphinx (8.2.3-10) ... Setting up python3-pydata-sphinx-theme (0.16.1+dfsg-4) ... Setting up python3-numcodecs (0.16.5+ds-1) ... Setting up python3-zarr (3.1.5-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m39.5s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m39.5s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmphyvj6syh/./tmp/piuparts-depends-dummy.deb 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m39.5s DUMP: piuparts-depends-dummy install ok installed 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m39.5s DUMP: (Reading database ... 19840 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'clean'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'clean'] 0m39.6s DEBUG: Recording chroot state 0m40.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 0m41.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 0m42.6s DEBUG: No broken symlinks as far as we can find. 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy'] 0m43.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy', 'python3-anndata'] 0m43.3s DUMP: python3-anndata: Installed: (none) Candidate: 0.12.6-1 Version table: 0.12.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy', 'python3-anndata'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', 'install', 'python3-anndata=0.12.6-1'] 0m44.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: python3-openpyxl The following NEW packages will be installed: python3-anndata 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 123 kB of archives. After this operation, 639 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 python3-anndata all 0.12.6-1 [123 kB] Fetched 123 kB in 0s (4108 kB/s) Selecting previously unselected package python3-anndata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../python3-anndata_0.12.6-1_all.deb ... Unpacking python3-anndata (0.12.6-1) ... Setting up python3-anndata (0.12.6-1) ... 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', 'install', 'python3-anndata=0.12.6-1'] 0m44.5s INFO: Running scripts post_install 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_install_exceptions'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_install_exceptions'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'systemd-tmpfiles', '--cat-config'] 0m44.5s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m44.5s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'systemd-tmpfiles', '--cat-config'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'remove', 'python3-anndata'] 0m45.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: docutils-common libaec0 libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libtasn1-6 libyaml-0-2 media-types node-fortawesome-fontawesome-free python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: python3-anndata 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 639 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Removing python3-anndata (0.12.6-1) ... 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'remove', 'python3-anndata'] 0m45.5s INFO: Reinstalling after remove 0m45.5s INFO: Running scripts pre_install 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_database-server'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_database-server'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_exceptions'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_exceptions'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_extras'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_extras'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy'] 0m45.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m45.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy'] 0m45.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy', 'python3-anndata'] 0m45.6s DUMP: python3-anndata: Installed: (none) Candidate: 0.12.6-1 Version table: 0.12.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m45.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy', 'python3-anndata'] 0m45.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', 'install', 'python3-anndata=0.12.6-1'] 0m46.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: python3-openpyxl The following NEW packages will be installed: python3-anndata 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/123 kB of archives. After this operation, 639 kB of additional disk space will be used. Selecting previously unselected package python3-anndata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../python3-anndata_0.12.6-1_all.deb ... Unpacking python3-anndata (0.12.6-1) ... Setting up python3-anndata (0.12.6-1) ... 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', 'install', 'python3-anndata=0.12.6-1'] 0m46.9s INFO: Running scripts post_install 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_install_exceptions'] 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_install_exceptions'] 0m46.9s INFO: Running scripts pre_install 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_database-server'] 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_database-server'] 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_exceptions'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_exceptions'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_extras'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_extras'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy'] 0m47.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy', 'python3-anndata'] 0m47.1s DUMP: python3-anndata: Installed: 0.12.6-1 Candidate: 0.12.6-1 Version table: *** 0.12.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-cache', 'policy', 'python3-anndata'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', 'install', '--reinstall', 'python3-anndata=0.12.6-1'] 0m48.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/123 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../python3-anndata_0.12.6-1_all.deb ... Unpacking python3-anndata (0.12.6-1) over (0.12.6-1) ... Setting up python3-anndata (0.12.6-1) ... 0m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', '-y', 'install', '--reinstall', 'python3-anndata=0.12.6-1'] 0m48.3s INFO: Running scripts post_install 0m48.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_install_exceptions'] 0m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_install_exceptions'] 0m48.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 0m49.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 0m50.8s DEBUG: No broken symlinks as far as we can find. 0m51.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', '-ac', '--ignore-obsolete'] 0m53.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', '-ac', '--ignore-obsolete'] 0m53.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m53.4s DUMP: 0.15.9~deb12u1 0m53.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m53.4s INFO: Running adequate version 0.15.9~deb12u1 now. 0m53.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'python3-anndata'] 0m53.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'python3-anndata'] 0m53.5s INFO: Running scripts pre_remove 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m54.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m54.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_exceptions'] 0m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_exceptions'] 0m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m54.8s DUMP: install ok installed apt apt 3.1.12 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed docutils-common docutils-common 0.22.3+dfsg-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-9 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.4-2 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblas3:amd64 libblas3 3.12.1-7 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.17.0-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282 install ok installed libexpat1:amd64 libexpat1 2.7.3-1 install ok installed libffi8:amd64 libffi8 3.5.2-2 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-9 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-9 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.11-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-4 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.2.3-10 install ok installed libjson-perl libjson-perl 4.10000-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2 install ok installed liblapack3:amd64 liblapack3 3.12.1-7 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-6 install ok installed liblzf1:amd64 liblzf1 3.6-4+b3 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libncursesw6:amd64 libncursesw6 6.5+20251123-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1.1+b1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.12.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.16.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.16.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.10-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-7 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.7-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.9-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.9-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-7 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-10 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-4 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 259~rc2-1 install ok installed libsz2:amd64 libsz2 1.1.4-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20251123-1 install ok installed libudev1:amd64 libudev1 259~rc2-1 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.41.2-4 install ok installed ncurses-base ncurses-base 6.5+20251123-1 install ok installed ncurses-bin ncurses-bin 6.5+20251123-1 install ok installed netbase netbase 6.5 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 6.7.2+ds1-1 install ok installed openssl openssl 3.5.4-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl perl 5.40.1-7 install ok installed perl-base perl-base 5.40.1-7 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-7 install ok installed procps procps 2:4.0.4-9 install ok installed python-babel-localedata python-babel-localedata 2.17.0-1 install ok installed python3 python3 3.13.7-1 install ok installed python3-accessible-pygments python3-accessible-pygments 0.0.5-2 install ok installed python3-alabaster python3-alabaster 0.7.16-0.1 install ok installed python3-anndata python3-anndata 0.12.6-1 install ok installed python3-array-api-compat python3-array-api-compat 1.11.2-1 install ok installed python3-babel python3-babel 2.17.0-1 install ok installed python3-bs4 python3-bs4 4.14.2-1 install ok installed python3-certifi python3-certifi 2025.11.12+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.4-1 install ok installed python3-crc32c python3-crc32c 2.7.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-docutils python3-docutils 0.22.3+dfsg-1 install ok installed python3-donfig python3-donfig 0.8.1+dfsg-3 install ok installed python3-h5py python3-h5py 3.15.1-3 install ok installed python3-h5py-serial python3-h5py-serial 3.15.1-3 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-imagesize python3-imagesize 1.4.1-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-1 install ok installed python3-markupsafe python3-markupsafe 3.0.3-1 install ok installed python3-minimal python3-minimal 3.13.7-1 install ok installed python3-natsort python3-natsort 8.4.0-1 install ok installed python3-numcodecs python3-numcodecs 0.16.5+ds-1 install ok installed python3-numpy python3-numpy 1:2.3.5+ds-2 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.3.5+ds-2 install ok installed python3-packaging python3-packaging 25.0-1 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-2 install ok installed python3-pydata-sphinx-theme python3-pydata-sphinx-theme 0.16.1+dfsg-4 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-2 install ok installed python3-pytz python3-pytz 2025.2-4 install ok installed python3-requests python3-requests 2.32.5+dfsg-1 install ok installed python3-roman-numerals python3-roman-numerals 3.1.0-2 install ok installed python3-scipy python3-scipy 1.16.3-1 install ok installed python3-snowballstemmer python3-snowballstemmer 3.0.1-1 install ok installed python3-soupsieve python3-soupsieve 2.7-2 install ok installed python3-sphinx python3-sphinx 8.2.3-10 install ok installed python3-typing-extensions python3-typing-extensions 4.15.0-1 install ok installed python3-urllib3 python3-urllib3 2.5.0-1 install ok installed python3-yaml python3-yaml 6.0.2-2 install ok installed python3-zarr python3-zarr 3.1.5-1 install ok installed python3.13 python3.13 3.13.9-1 install ok installed python3.13-minimal python3.13-minimal 3.13.9-1 install ok installed readline-common readline-common 8.3-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sphinx-common sphinx-common 8.2.3-10 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed util-linux util-linux 2.41.2-4 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libaec0:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core', 'python3-anndata'] 0m59.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates docutils-common libaec0 libblas3 libblosc1 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libidn2-0 libjs-sphinxdoc libjson-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libp11-kit0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1t64 libsz2 libtasn1-6 libunistring5 libyaml-0-2 media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 python-babel-localedata python3 python3-accessible-pygments python3-alabaster python3-anndata python3-array-api-compat python3-babel python3-bs4 python3-certifi python3-chardet python3-charset-normalizer python3-crc32c python3-dateutil python3-decorator python3-defusedxml python3-docutils python3-donfig python3-h5py python3-h5py-serial python3-idna python3-imagesize python3-jinja2 python3-markupsafe python3-minimal python3-natsort python3-numcodecs python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pydata-sphinx-theme python3-pygments python3-pytz python3-requests python3-roman-numerals python3-scipy python3-snowballstemmer python3-soupsieve python3-sphinx python3-typing-extensions python3-urllib3 python3-yaml python3-zarr python3.13 python3.13-minimal readline-common sgml-base sphinx-common xml-core 0 upgraded, 0 newly installed, 105 to remove and 0 not upgraded. After this operation, 351 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Removing python3-anndata (0.12.6-1) ... Removing python3-zarr (3.1.5-1) ... Removing python3-numcodecs (0.16.5+ds-1) ... Removing python3-pydata-sphinx-theme (0.16.1+dfsg-4) ... Removing python3-sphinx (8.2.3-10) ... Removing python3-requests (2.32.5+dfsg-1) ... Removing python3-certifi (2025.11.12+ds-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-docutils (0.22.3+dfsg-1) ... Removing docutils-common (0.22.3+dfsg-1) ... Removing python3-h5py (3.15.1-3) ... Removing python3-h5py-serial (3.15.1-3) ... Removing libhdf5-hl-310:amd64 (1.14.5+repack-4) ... Removing libhdf5-310:amd64 (1.14.5+repack-4) ... Removing libsz2:amd64 (1.1.4-2) ... Removing libaec0:amd64 (1.1.4-2) ... Removing python3-scipy (1.16.3-1) ... Removing python3-pandas (2.3.3+dfsg-2) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-2) ... Removing python3-numpy (1:2.3.5+ds-2) ... Removing liblapack3:amd64 (3.12.1-7) ... Removing libblas3:amd64 (3.12.1-7) ... Removing libblosc1:amd64 (1.21.5+ds-2) ... Removing libcurl4t64:amd64 (8.17.0-3) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libgssapi-krb5-2:amd64 (1.22.1-2) ... Removing libkrb5-3:amd64 (1.22.1-2) ... Removing libcom-err2:amd64 (1.47.2-3+b3) ... Removing python3-donfig (0.8.1+dfsg-3) ... Removing python3-yaml (6.0.2-2) ... Removing python3-bs4 (4.14.2-1) ... Removing python3-soupsieve (2.7-2) ... Removing python3-crc32c (2.7.1-1) ... Removing python3-snowballstemmer (3.0.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Removing libgnutls30t64:amd64 (3.8.11-3) ... Removing libp11-kit0:amd64 (0.25.10-1) ... Removing sphinx-common (8.2.3-10) ... Removing libjson-perl (4.10000-1) ... Removing perl (5.40.1-7) ... Removing libperl5.40:amd64 (5.40.1-7) ... Removing libgdbm-compat4t64:amd64 (1.26-1) ... Removing libgdbm6t64:amd64 (1.26-1) ... Removing libgfortran5:amd64 (15.2.0-9) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-4) ... Removing libjs-sphinxdoc (8.2.3-10) ... Removing libk5crypto3:amd64 (1.22.1-2) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.22.1-2) ... Removing libldap2:amd64 (2.6.10+dfsg-1) ... Removing liblzf1:amd64 (3.6-4+b3) ... Removing libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Removing libnghttp3-9:amd64 (1.12.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Removing libngtcp2-16:amd64 (1.16.0-1) ... Removing libqhull-r8.0:amd64 (2020.2-7) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Removing libsnappy1v5:amd64 (1.2.2-2) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-2) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... Removing openssl (3.5.4-1) ... Removing perl-modules-5.40 (5.40.1-7) ... Removing python3-babel (2.17.0-1) ... Removing python-babel-localedata (2.17.0-1) ... Removing python3-accessible-pygments (0.0.5-2) ... Removing python3-alabaster (0.7.16-0.1) ... Removing python3-array-api-compat (1.11.2-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.4-1) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-decorator (5.2.1-2) ... Removing python3-defusedxml (0.7.1-3) ... Removing python3-idna (3.10-1) ... Removing python3-imagesize (1.4.1-1) ... Removing python3-jinja2 (3.1.6-1) ... Removing python3-markupsafe (3.0.3-1) ... Removing python3-natsort (8.4.0-1) ... Removing python3-numpy-dev:amd64 (1:2.3.5+ds-2) ... Removing python3-packaging (25.0-1) ... Removing python3-pygments (2.18.0+dfsg-2) ... Removing python3-pytz (2025.2-4) ... Removing python3-roman-numerals (3.1.0-2) ... Removing python3-typing-extensions (4.15.0-1) ... Removing python3-urllib3 (2.5.0-1) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing python3 (3.13.7-1) ... Removing python3.13 (3.13.9-1) ... Removing python3-minimal (3.13.7-1) ... Removing python3.13-minimal (3.13.9-1) ... Removing libexpat1:amd64 (2.7.3-1) ... Removing libpython3-stdlib:amd64 (3.13.7-1) ... Removing libpython3.13-stdlib:amd64 (3.13.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-2) ... Removing libpython3.13-minimal:amd64 (3.13.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-8) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-3) ... Processing triggers for libc-bin (2.41-12) ... 0m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'docutils-common', 'libaec0:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core', 'python3-anndata'] 0m59.7s INFO: Running scripts post_remove 0m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_remove_cleanup'] 0m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_remove_cleanup'] 0m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_remove_exceptions'] 0m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_remove_exceptions'] 0m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libaec0:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core'] 1m0.0s DUMP: (Reading database ... 5438 files and directories currently installed.) Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for docutils-common (0.22.3+dfsg-1) ... dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-2) ... dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.9-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-3) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove node-fortawesome-fontawesome-free which isn't installed Purging configuration files for openssl (3.5.4-1) ... Purging configuration files for perl (5.40.1-7) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed Purging configuration files for python3 (3.13.7-1) ... dpkg: warning: ignoring request to remove python3-accessible-pygments which isn't installed dpkg: warning: ignoring request to remove python3-alabaster which isn't installed dpkg: warning: ignoring request to remove python3-array-api-compat which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-crc32c which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-defusedxml which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-donfig which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-imagesize which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-natsort which isn't installed dpkg: warning: ignoring request to remove python3-numcodecs which isn't installed Purging configuration files for python3-numpy (1:2.3.5+ds-2) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pydata-sphinx-theme which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-roman-numerals which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-snowballstemmer which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-sphinx which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zarr which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.9-1) ... Purging configuration files for readline-common (8.3-3) ... Purging configuration files for sgml-base (1.31+nmu1) ... dpkg: warning: ignoring request to remove sphinx-common which isn't installed Purging configuration files for xml-core (0.19) ... 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'libaec0:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libidn2-0:amd64', 'libjs-sphinxdoc', 'libjson-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python-babel-localedata', 'python3', 'python3-accessible-pygments', 'python3-alabaster', 'python3-array-api-compat', 'python3-babel', 'python3-bs4', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-crc32c', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-docutils', 'python3-donfig', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-markupsafe', 'python3-minimal', 'python3-natsort', 'python3-numcodecs', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pydata-sphinx-theme', 'python3-pygments', 'python3-pytz', 'python3-requests', 'python3-roman-numerals', 'python3-scipy', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sphinx', 'python3-typing-extensions', 'python3-urllib3', 'python3-yaml', 'python3-zarr', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'sphinx-common', 'xml-core'] 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', 'python3-anndata'] 1m0.0s DUMP: dpkg: warning: ignoring request to remove python3-anndata which isn't installed 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', 'python3-anndata'] 1m0.0s INFO: Running scripts post_purge 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_purge_exceptions'] 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_purge_exceptions'] 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_purge_manual_cleanup'] 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_purge_manual_cleanup'] 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', '--pending'] 1m0.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--purge', '--pending'] 1m0.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--remove', '--pending'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg', '--remove', '--pending'] 1m0.1s INFO: Running scripts post_test 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_test_exceptions'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'tmp/scripts/post_test_exceptions'] 1m0.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 1m0.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 1m0.7s DEBUG: No broken symlinks as far as we can find. 1m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-divert', '--list'] 1m0.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'dpkg-divert', '--list'] 1m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'clean'] 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphyvj6syh', 'apt-get', 'clean'] 1m0.7s DEBUG: Recording chroot state 1m1.8s INFO: PASS: Installation and purging test. 1m2.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/shm'] 1m2.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/shm'] 1m2.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/console'] 1m2.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/console'] 1m2.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/ptmx'] 1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/ptmx'] 1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/pts'] 1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/dev/pts'] 1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/proc'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphyvj6syh/proc'] 1m2.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 1m2.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphyvj6syh'] 1m2.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmphyvj6syh 1m2.4s INFO: PASS: All tests. 1m2.4s INFO: piuparts run ends. ret=0 End: 2025-11-30 21:55:03 GMT