Start: 2025-09-14 04:56:50 GMT Package: python3-biopython Source: python-biopython Version: 1.85+dfsg-5 Installed-Size: 11833 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-numpy, python3:any, libc6 (>= 2.14), python3-reportlab (>= 4.0.4-1~), w3c-sgml-lib Recommends: python-biopython-doc (= 1.85+dfsg-5), ncbi-blast+ Suggests: python3-tk, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle3, phylip, phyml, prank, probcons, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-scipy, python3-igraph, raxml, samtools, t-coffee, wise Breaks: ncbi-acc-download (<< 0.2.7-2~) Description: Python3 library for bioinformatics Homepage: https://biopython.org Description-md5: b0edcac4d61d56d664f586a477d26535 Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython_1.85+dfsg-5_amd64.deb Size: 1674308 MD5sum: bef2de232161cd067fd118ad354339fa SHA256: b3d443c5011bbeb0d167c04720ddfd00a425d8aecaf22c67300c3b78cbfce7fa Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-biopython=1.85+dfsg-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-biopython=1.85+dfsg-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-39-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.148-1 (2025-08-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmps8xcj7o1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmps8xcj7o1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmps8xcj7o1/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmps8xcj7o1/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'update'] 0m3.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [216 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7428 kB] Fetched 17.8 MB in 2s (9618 kB/s) Reading package lists... 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'update'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: 20842a373465574a3e31bc713decdcad - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_fake-essential'] 0m7.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... init-system-helpers is already the newest version (1.69). The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1776 kB of archives. After this operation, 4974 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0052 [43.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.25 [604 kB] Preconfiguring packages ... Fetched 1776 kB in 0s (28.0 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4936 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.25_all.deb ... Unpacking dbconfig-common (2.0.25) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.4-9) ... Setting up ucf (3.0052) ... Setting up dbconfig-common (2.0.25) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-12) ... 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_fake-essential'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_minimize'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_setup_zz_backports'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'clean'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'clean'] 0m8.0s DEBUG: Recording chroot state 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.4s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.1-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.1-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-3 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 258~rc4-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258~rc4-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed procps procps 2:4.0.4-9 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed util-linux util-linux 2.41.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-divert', '--list'] 0m8.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-divert', '--list'] 0m8.4s INFO: Running scripts is_testable 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s INFO: apt-cache does not know about any of the requested packages 0m8.4s INFO: Running scripts pre_test 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_test_root_password'] 0m8.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_test_root_password'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 0m8.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 0m9.1s DEBUG: No broken symlinks as far as we can find. 0m9.1s INFO: Running scripts pre_install 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython=1.85+dfsg-5'] 0m10.0s DUMP: Package: python3-biopython Source: python-biopython Version: 1.85+dfsg-5 Installed-Size: 11833 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-numpy, python3:any, libc6 (>= 2.14), python3-reportlab (>= 4.0.4-1~), w3c-sgml-lib Recommends: python-biopython-doc (= 1.85+dfsg-5), ncbi-blast+ Suggests: python3-tk, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle3, phylip, phyml, prank, probcons, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-scipy, python3-igraph, raxml, samtools, t-coffee, wise Breaks: ncbi-acc-download (<< 0.2.7-2~) Description-en: Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. Description-md5: b0edcac4d61d56d664f586a477d26535 Homepage: https://biopython.org Section: python Priority: optional Filename: pool/main/p/python-biopython/python3-biopython_1.85+dfsg-5_amd64.deb Size: 1674308 MD5sum: bef2de232161cd067fd118ad354339fa SHA256: b3d443c5011bbeb0d167c04720ddfd00a425d8aecaf22c67300c3b78cbfce7fa 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'show', '--no-all-versions', 'python3-biopython=1.85+dfsg-5'] 0m10.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: python3 (<< 3.14), python3 (>= 3.13~), python3-numpy, python3:any, libc6 (>= 2.14), python3-reportlab (>= 4.0.4-1~), w3c-sgml-lib Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m10.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpeauwubho/piuparts-depends-dummy'] 0m10.1s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpeauwubho/piuparts-depends-dummy.deb'. 0m10.1s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpeauwubho/piuparts-depends-dummy'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.1s DUMP: 3.1.5 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.1s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpeauwubho/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmps8xcj7o1/tmp 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m59.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libdav1d7 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libyuv0 media-types netbase python3 python3-cairo python3-charset-normalizer python3-freetype python3-minimal python3-numpy python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3.13 python3.13-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre low-memory-monitor liblcms2-utils python3-doc python3-tk python3-venv python-charset-normalizer-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs python3-olefile fonts-dejavu-extra ca-certificates The following NEW packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libdav1d7 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libyuv0 media-types netbase piuparts-depends-dummy python3 python3-cairo python3-charset-normalizer python3-freetype python3-minimal python3-numpy python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3.13 python3.13-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 46.4 MB/46.4 MB of archives. After this operation, 144 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [702 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-3 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get:18 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get:20 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:21 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:26 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+25 [217 kB] Get:27 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:28 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:29 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:30 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 15.2.0-4 [9508 B] Get:34 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get:36 http://deb.debian.org/debian sid/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-6 [76.3 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 11.4.5-1 [505 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:60 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:61 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-5 [364 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 11.3.0-1 [526 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:74 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.4.3-1 [1168 kB] Get:75 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:76 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:77 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Preconfiguring packages ... Fetched 46.4 MB in 0s (131 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5475 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5809 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../6-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../7-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6307 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. 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Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libaom3:amd64 (3.12.1-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libdeflate0:amd64 (1.23-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up libatomic1:amd64 (15.2.0-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up libtiff6:amd64 (4.7.0-5) ... Setting up librav1e0.7:amd64 (0.7.1-9+b2) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libyuv0:amd64 (0.0.1916.20250814-1) ... Setting up readline-common (8.3-3) ... Setting up libavif16:amd64 (1.3.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (11.4.5-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.3.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-reportlab (4.4.3-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m59.0s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m59.0s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmps8xcj7o1/./tmp/piuparts-depends-dummy.deb 0m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m59.1s DUMP: piuparts-depends-dummy install ok installed 0m59.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m59.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m59.1s DUMP: (Reading database ... 9571 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m59.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m59.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'clean'] 0m59.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'clean'] 0m59.1s DEBUG: Recording chroot state 0m59.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m0.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m1.6s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Italic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-BoldItalic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Bold.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-Italic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-BoldItalic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Oblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-BoldOblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Bold.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-Oblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-ExtraLight.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-ExtraLight.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-BoldOblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuMathTeXGyre.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuMathTeXGyre.ttf 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy'] 1m2.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy'] 1m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy', 'python3-biopython'] 1m2.4s DUMP: python3-biopython: Installed: (none) Candidate: 1.85+dfsg-5 Version table: 1.85+dfsg-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy', 'python3-biopython'] 1m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', 'install', 'python3-biopython=1.85+dfsg-5'] 1m4.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy python3-igraph raxml samtools t-coffee wise Recommended packages: python-biopython-doc ncbi-blast+ The following NEW packages will be installed: python3-biopython 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1674 kB of archives. After this operation, 12.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.85+dfsg-5 [1674 kB] Fetched 1674 kB in 0s (31.9 MB/s) Selecting previously unselected package python3-biopython. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9571 files and directories currently installed.) Preparing to unpack .../python3-biopython_1.85+dfsg-5_amd64.deb ... Unpacking python3-biopython (1.85+dfsg-5) ... Setting up python3-biopython (1.85+dfsg-5) ... 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', 'install', 'python3-biopython=1.85+dfsg-5'] 1m4.6s INFO: Running scripts post_install 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_install_exceptions'] 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_install_exceptions'] 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'systemd-tmpfiles', '--cat-config'] 1m4.6s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m4.6s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'systemd-tmpfiles', '--cat-config'] 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'remove', 'python3-biopython'] 1m5.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libdav1d7 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libyuv0 media-types netbase python3 python3-cairo python3-charset-normalizer python3-freetype python3-minimal python3-numpy python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3.13 python3.13-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: python3-biopython 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 12.1 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10319 files and directories currently installed.) Removing python3-biopython (1.85+dfsg-5) ... 1m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'remove', 'python3-biopython'] 1m5.5s INFO: Reinstalling after remove 1m5.5s INFO: Running scripts pre_install 1m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_database-server'] 1m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_database-server'] 1m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_exceptions'] 1m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_exceptions'] 1m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_extras'] 1m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_extras'] 1m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture'] 1m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture'] 1m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy'] 1m5.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy'] 1m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy', 'python3-biopython'] 1m5.6s DUMP: python3-biopython: Installed: (none) Candidate: 1.85+dfsg-5 Version table: 1.85+dfsg-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy', 'python3-biopython'] 1m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', 'install', 'python3-biopython=1.85+dfsg-5'] 1m7.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy python3-igraph raxml samtools t-coffee wise Recommended packages: python-biopython-doc ncbi-blast+ The following NEW packages will be installed: python3-biopython 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1674 kB of archives. After this operation, 12.1 MB of additional disk space will be used. Selecting previously unselected package python3-biopython. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9571 files and directories currently installed.) Preparing to unpack .../python3-biopython_1.85+dfsg-5_amd64.deb ... Unpacking python3-biopython (1.85+dfsg-5) ... Setting up python3-biopython (1.85+dfsg-5) ... 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', 'install', 'python3-biopython=1.85+dfsg-5'] 1m7.3s INFO: Running scripts post_install 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_install_exceptions'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_install_exceptions'] 1m7.3s INFO: Running scripts pre_install 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_database-server'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_database-server'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_exceptions'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_exceptions'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_extras'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_extras'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy'] 1m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy'] 1m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy', 'python3-biopython'] 1m7.5s DUMP: python3-biopython: Installed: 1.85+dfsg-5 Candidate: 1.85+dfsg-5 Version table: *** 1.85+dfsg-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-cache', 'policy', 'python3-biopython'] 1m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', 'install', '--reinstall', 'python3-biopython=1.85+dfsg-5'] 1m10.5s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/1674 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10319 files and directories currently installed.) Preparing to unpack .../python3-biopython_1.85+dfsg-5_amd64.deb ... Unpacking python3-biopython (1.85+dfsg-5) over (1.85+dfsg-5) ... Setting up python3-biopython (1.85+dfsg-5) ... 1m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', '-y', 'install', '--reinstall', 'python3-biopython=1.85+dfsg-5'] 1m10.5s INFO: Running scripts post_install 1m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_install_exceptions'] 1m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_install_exceptions'] 1m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m11.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m12.3s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-ExtraLight.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-ExtraLight.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuMathTeXGyre.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuMathTeXGyre.ttf (python3-reportlab) 1m12.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', '-ac', '--ignore-obsolete'] 1m13.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', '-ac', '--ignore-obsolete'] 1m13.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m13.7s DUMP: 0.15.9~deb12u1 1m13.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m13.7s INFO: Running adequate version 0.15.9~deb12u1 now. 1m13.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'python3-biopython'] 1m13.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'python3-biopython'] 1m13.9s INFO: Running scripts pre_remove 1m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_exceptions'] 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_exceptions'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m17.0s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.1-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaom3:amd64 libaom3 3.12.1-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libatomic1:amd64 libatomic1 15.2.0-4 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.1-1 install ok installed libavif16:amd64 libavif16 1.3.0-1 install ok installed libblas3:amd64 libblas3 3.12.1-7 install ok installed libblkid1:amd64 libblkid1 2.41.1-3 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdav1d7:amd64 libdav1d7 1.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libffi8:amd64 libffi8 3.5.2-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.4 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgav1-1:amd64 libgav1-1 0.19.0-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgfortran5:amd64 libgfortran5 15.2.0-4 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.4-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-6 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 11.4.5-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libimagequant0:amd64 libimagequant0 4.4.0-3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed liblapack3:amd64 liblapack3 3.12.1-7 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-3 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-3 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2.1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.50-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.7-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.7-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.7-1 install ok installed libraqm0:amd64 libraqm0 0.10.3-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-9+b2 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 258~rc4-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtiff6:amd64 libtiff6 4.7.0-5 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258~rc4-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-3 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyuv0:amd64 libyuv0 0.0.1916.20250814-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.41.1-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed procps procps 2:4.0.4-9 install ok installed python3 python3 3.13.7-1 install ok installed python3-biopython python3-biopython 1.85+dfsg-5 install ok installed python3-cairo python3-cairo 1.27.0-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.3-1 install ok installed python3-freetype python3-freetype 2.5.1-2 install ok installed python3-minimal python3-minimal 3.13.7-1 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1.2 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1.2 install ok installed python3-pil:amd64 python3-pil 11.3.0-1 install ok installed python3-reportlab python3-reportlab 4.4.3-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3.13 python3.13 3.13.7-1 install ok installed python3.13-minimal python3.13-minimal 3.13.7-1 install ok installed readline-common readline-common 8.3-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed ucf ucf 3.0052 install ok installed util-linux util-linux 2.41.1-3 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+25 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 1m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'remove', '--allow-remove-essential', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libopenjp2-7:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'python3', 'python3-cairo', 'python3-charset-normalizer', 'python3-freetype', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'python3-biopython'] 1m55.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 libabsl20240722 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libdav1d7 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 librav1e0.7 libreadline8t64 libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libyuv0 media-types netbase python3 python3-biopython python3-cairo python3-charset-normalizer python3-freetype python3-minimal python3-numpy python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3.13 python3.13-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 77 to remove and 0 not upgraded. After this operation, 156 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10319 files and directories currently installed.) Removing python3-biopython (1.85+dfsg-5) ... Removing python3-reportlab (4.4.3-1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.27.0-2) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-2.4) ... Removing fontconfig-config (2.15.0-2.4) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-urw-base35 (20200910-8) ... Removing python3-pil:amd64 (11.3.0-1) ... Removing libavif16:amd64 (1.3.0-1) ... Removing libgav1-1:amd64 (0.19.0-3+b1) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing libaom3:amd64 (3.12.1-1) ... Removing libraqm0:amd64 (0.10.3-1) ... Removing libharfbuzz0b:amd64 (11.4.5-1) ... Removing libglib2.0-0t64:amd64 (2.84.4-3) ... Removing libatomic1:amd64 (15.2.0-4) ... Removing python3-numpy (1:2.2.4+ds-1.2) ... Removing liblapack3:amd64 (3.12.1-7) ... Removing libblas3:amd64 (3.12.1-7) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-2) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libdav1d7:amd64 (1.5.1-1) ... Removing libtiff6:amd64 (4.7.0-5) ... Removing libdeflate0:amd64 (1.23-2) ... Removing python3-charset-normalizer (3.4.3-1) ... Removing python3 (3.13.7-1) ... Removing python3-minimal (3.13.7-1) ... Removing python3.13 (3.13.7-1) ... Removing python3.13-minimal (3.13.7-1) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing libpython3-stdlib:amd64 (3.13.7-1) ... Removing libpython3.13-stdlib:amd64 (3.13.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-2) ... Removing libfontenc1:amd64 (1:1.1.8-1+b2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing libgfortran5:amd64 (15.2.0-4) ... Removing libgraphite2-3:amd64 (1.3.14-6) ... Removing libimagequant0:amd64 (4.4.0-3) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libyuv0:amd64 (0.0.1916.20250814-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing libopenjp2-7:amd64 (2.5.3-2.1) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.50-1) ... Removing libpython3.13-minimal:amd64 (3.13.7-1) ... find: '/usr/lib/python3': No such file or directory Removing librav1e0.7:amd64 (0.7.1-9+b2) ... Removing libreadline8t64:amd64 (8.3-3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libwebpmux3:amd64 (1.5.0-0.1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Removing readline-common (8.3-3) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Processing triggers for libc-bin (2.41-12) ... 1m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'remove', '--allow-remove-essential', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libopenjp2-7:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'python3', 'python3-cairo', 'python3-charset-normalizer', 'python3-freetype', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'python3-biopython'] 1m55.6s INFO: Running scripts post_remove 1m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_remove_cleanup'] 1m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_remove_cleanup'] 1m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_remove_exceptions'] 1m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_remove_exceptions'] 1m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libopenjp2-7:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'python3', 'python3-cairo', 'python3-charset-normalizer', 'python3-freetype', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 1m56.2s DUMP: (Reading database ... 5531 files and directories currently installed.) Purging configuration files for fontconfig-config (2.15.0-2.4) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove libabsl20240722 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libavif16 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.4-3) ... dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.7-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove librav1e0.7 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.3-3) ... dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc2 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed Purging configuration files for media-types (13.0.0) ... Purging configuration files for netbase (6.5) ... Purging configuration files for python3 (3.13.7-1) ... dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1.2) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.7-1) ... Purging configuration files for readline-common (8.3-3) ... Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+25) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... 1m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'libabsl20240722:amd64', 'libaom3:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libdav1d7:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libopenjp2-7:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'librav1e0.7:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libyuv0:amd64', 'media-types', 'netbase', 'python3', 'python3-cairo', 'python3-charset-normalizer', 'python3-freetype', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pil:amd64', 'python3-reportlab', 'python3-rlpycairo', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 1m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', 'python3-biopython'] 1m56.3s DUMP: dpkg: warning: ignoring request to remove python3-biopython which isn't installed 1m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', 'python3-biopython'] 1m56.3s INFO: Running scripts post_purge 1m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_purge_exceptions'] 1m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_purge_exceptions'] 1m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_purge_manual_cleanup'] 1m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_purge_manual_cleanup'] 1m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', '--pending'] 1m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--purge', '--pending'] 1m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--remove', '--pending'] 1m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg', '--remove', '--pending'] 1m56.3s INFO: Running scripts post_test 1m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_test_exceptions'] 1m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'tmp/scripts/post_test_exceptions'] 1m56.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m56.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m57.2s DEBUG: No broken symlinks as far as we can find. 1m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-divert', '--list'] 1m57.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m57.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'dpkg-divert', '--list'] 1m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'clean'] 1m57.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1', 'apt-get', 'clean'] 1m57.2s DEBUG: Recording chroot state 1m58.7s INFO: PASS: Installation and purging test. 1m59.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/shm'] 1m59.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/shm'] 1m59.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/console'] 1m59.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/console'] 1m59.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/ptmx'] 1m59.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/ptmx'] 1m59.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/pts'] 1m59.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/dev/pts'] 1m59.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/proc'] 1m59.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1/proc'] 1m59.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m59.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps8xcj7o1'] 1m59.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmps8xcj7o1 1m59.4s INFO: PASS: All tests. 1m59.4s INFO: piuparts run ends. ret=0 End: 2025-09-14 04:58:50 GMT