Start: 2026-09-04 05:51:35 GMT Package: python3-mdtraj Source: mdtraj (1.11.1.post1-3) Version: 1.11.1.post1-3+b1 Installed-Size: 4582 Maintainer: Debichem Team Architecture: amd64 Depends: python3 (<< 3.15), python3 (>= 3.14~), python3-numpy (>= 2.0.0~), python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.43), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), python3-networkx, python3-pandas, python3-tables Recommends: python3-gsd, python3-netcdf4 Suggests: python-mdtraj-doc Description: Read, write and analyze MD trajectories in Python Homepage: https://mdtraj.org/ Description-md5: 9529e886acd83777a94bda862bd265ce Section: python Priority: optional Filename: pool/main/m/mdtraj/python3-mdtraj_1.11.1.post1-3+b1_amd64.deb Size: 1047872 MD5sum: 7829cd1df1465191aae006944e52dd47 SHA256: 59f190fc9c7dcf58dd2260b2e23bf001dcf05c204b410165b947cce310223421 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-mdtraj=1.11.1.post1-3+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt python3-mdtraj=1.11.1.post1-3+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpllqyy778 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpllqyy778 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpllqyy778', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpllqyy778', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpllqyy778/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpllqyy778/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/12', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/12', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpllqyy778/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpllqyy778/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'update'] 0m3.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.7 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7720 kB] Fetched 18.6 MB in 2s (9801 kB/s) Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-16-base libgcc-s1 libstdc++6 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 936 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16.2.0-2 [38.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16.2.0-2 [823 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16.2.0-2 [74.1 kB] Fetched 936 kB in 0s (20.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4974 files and directories currently installed.) Preparing to unpack .../gcc-16-base_16.2.0-2_amd64.deb ... Unpacking gcc-16-base:amd64 (16.2.0-2) over (16.2.0-1) ... Setting up gcc-16-base:amd64 (16.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4974 files and directories currently installed.) Preparing to unpack .../libstdc++6_16.2.0-2_amd64.deb ... Unpacking libstdc++6:amd64 (16.2.0-2) over (16.2.0-1) ... Setting up libstdc++6:amd64 (16.2.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4974 files and directories currently installed.) Preparing to unpack .../libgcc-s1_16.2.0-2_amd64.deb ... Unpacking libgcc-s1:amd64 (16.2.0-2) over (16.2.0-1) ... Setting up libgcc-s1:amd64 (16.2.0-2) ... Processing triggers for libc-bin (2.43-4) ... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-yf', 'dist-upgrade'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.2s DUMP: ab22adaac8777b73a75c40f57a799a3f - 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.2s INFO: Running scripts post_setup 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_dummy_users'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_fake-essential'] 0m7.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69+nmu1). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mariadb | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1917 kB of archives. After this operation, 5465 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.1.0 [627 kB] Preconfiguring packages ... Fetched 1917 kB in 0s (28.8 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4974 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.1.0_all.deb ... Unpacking dbconfig-common (2.1.0) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.7-1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.7-1) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.1.0) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.43-4) ... 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_fake-essential'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_forbid_home'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_minimize'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_minimize'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_zz_backports'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_setup_zz_backports'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'clean'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'clean'] 0m7.6s DEBUG: Recording chroot state 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3+b1 install ok installed bsdutils bsdutils 1:2.42.2-4 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-2 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-4 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-4 install ok installed libc6:amd64 libc6 2.43-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.5-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-4 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-2 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-4 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 262~rc1-2 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262~rc1-2 install ok installed libuuid1:amd64 libuuid1 2.42.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-4 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-4 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-divert', '--list'] 0m8.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-divert', '--list'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: apt-cache does not know about any of the requested packages 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_test_root_password'] 0m8.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_test_root_password'] 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m8.6s DEBUG: No broken symlinks as far as we can find. 0m8.6s INFO: Running scripts pre_install 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'show', '--no-all-versions', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m9.8s DUMP: Package: python3-mdtraj Source: mdtraj (1.11.1.post1-3) Version: 1.11.1.post1-3+b1 Installed-Size: 4582 Maintainer: Debichem Team Architecture: amd64 Depends: python3 (<< 3.15), python3 (>= 3.14~), python3-numpy (>= 2.0.0~), python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.43), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), python3-networkx, python3-pandas, python3-tables Recommends: python3-gsd, python3-netcdf4 Suggests: python-mdtraj-doc Description-en: Read, write and analyze MD trajectories in Python Read, write and analyze MD trajectories with only a few lines of Python code. . MDTraj is a Python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include: * Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more. * Extremely fast RMSD calculations (4x the speed of the original Theobald QCP). * Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables. * Lightweight, Pythonic API. . MDTraj includes a command-line application, mdconvert-mdtraj, for converting trajectories between formats. . This package installs the library for Python 3, together with the command line utilities mdconvert-mdtraj and mdinspect. Description-md5: 9529e886acd83777a94bda862bd265ce Homepage: https://mdtraj.org/ Section: python Priority: optional Filename: pool/main/m/mdtraj/python3-mdtraj_1.11.1.post1-3+b1_amd64.deb Size: 1047872 MD5sum: 7829cd1df1465191aae006944e52dd47 SHA256: 59f190fc9c7dcf58dd2260b2e23bf001dcf05c204b410165b947cce310223421 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'show', '--no-all-versions', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m9.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: python3 (<< 3.15), python3 (>= 3.14~), python3-numpy (>= 2.0.0~), python3-numpy2-abi0 | python3-numpy-abi9, python3-packaging, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.43), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 13.1), python3-networkx, python3-pandas, python3-tables Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m9.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmphk9rpp9l/piuparts-depends-dummy'] 0m9.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmphk9rpp9l/piuparts-depends-dummy.deb'. 0m9.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmphk9rpp9l/piuparts-depends-dummy'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.8s DUMP: 3.3.3 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmphk9rpp9l/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpllqyy778/tmp 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m30.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libblas3 libblosc1 libblosc2-7 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 liblapack3 liblzo2-2 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 media-types netbase python-tables-data python3 python3-cpuinfo python3-dateutil python3-decorator python3-minimal python3-networkx python3-numexpr python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pyparsing python3-pytz python3-scipy python3-tables python3-tables-lib python3.14 python3.14-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pyparsing-doc python-scipy-doc python3-netcdf4 python-tables-doc vitables python3.14-venv python3.14-doc binutils binfmt-support readline-doc Recommended packages: python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-yaml python3-bottleneck python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-jinja2 python3-numba g++ | c++-compiler python3-pil python3-pooch ca-certificates The following NEW packages will be installed: libblas3 libblosc1 libblosc2-7 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 liblapack3 liblzo2-2 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 media-types netbase piuparts-depends-dummy python-tables-data python3 python3-cpuinfo python3-dateutil python3-decorator python3-minimal python3-networkx python3-numexpr python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pyparsing python3-pytz python3-scipy python3-tables python3-tables-lib python3.14 python3.14-minimal readline-common 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 76.2 MB/76.2 MB of archives. After this operation, 387 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [760 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.4-1 [130 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.7-1 [899 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.7-1 [2714 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.6 [10.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.7-1 [2356 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.7-1 [861 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-4 [137 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-2 [878 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.4.6+ds-4 [7509 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-2+b2 [29.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libblosc2-7 amd64 2.23.1+ds-2 [201 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-2 [151 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libhdf5-320 amd64 2.2.0+repack-4 [2178 kB] Get:27 http://deb.debian.org/debian sid/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:29 http://deb.debian.org/debian sid/main amd64 python-tables-data all 3.11.1-3 [45.9 kB] Get:30 http://deb.debian.org/debian sid/main amd64 python3-cpuinfo all 9.0.0+git20221119-3 [23.5 kB] Get:31 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:32 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.4.2-6 [24.1 MB] Get:34 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.2-2 [84.2 kB] Get:35 http://deb.debian.org/debian sid/main amd64 python3-numexpr amd64 2.14.2-1 [146 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2026.3.post1-1 [34.3 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-3+b1 [6581 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.3.3+dfsg-3 [2935 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.17.1-5 [18.6 MB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-tables-lib amd64 3.11.1-3 [494 kB] Get:42 http://deb.debian.org/debian sid/main amd64 python3-tables all 3.11.1-3 [354 kB] Fetched 76.2 MB in 0s (178 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5515 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.4-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.7-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.7-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../python3.14-minimal_3.14.7-1_amd64.deb ... Unpacking python3.14-minimal (3.14.7-1) ... Setting up libpython3.14-minimal:amd64 (3.14.7-1) ... Setting up libexpat1:amd64 (2.8.4-1) ... Setting up python3.14-minimal (3.14.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5871 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../7-libpython3.14-stdlib_3.14.7-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.7-1) ... Selecting previously unselected package python3.14. 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Preparing to unpack .../00-python3_3.14.7-3_amd64.deb ... Unpacking python3 (3.14.7-3) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../01-python3-numpy-dev_1%3a2.4.6+ds-4_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.4.6+ds-4) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../02-libblas3_3.12.1-8_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_16.2.0-2_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../04-liblapack3_3.12.1-8_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-8) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.4.6+ds-4_amd64.deb ... Unpacking python3-numpy (1:2.4.6+ds-4) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../06-libsnappy1v5_1.2.2-2+b2_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.2.2-2+b2) ... Selecting previously unselected package libblosc1:amd64. Preparing to unpack .../07-libblosc1_1.21.5+ds-2+b2_amd64.deb ... Unpacking libblosc1:amd64 (1.21.5+ds-2+b2) ... Selecting previously unselected package libblosc2-7:amd64. Preparing to unpack .../08-libblosc2-7_2.23.1+ds-2_amd64.deb ... Unpacking libblosc2-7:amd64 (2.23.1+ds-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../09-libgomp1_16.2.0-2_amd64.deb ... Unpacking libgomp1:amd64 (16.2.0-2) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../10-libsz2_1.1.7-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.7-1) ... Selecting previously unselected package libhdf5-320:amd64. Preparing to unpack .../11-libhdf5-320_2.2.0+repack-4_amd64.deb ... Unpacking libhdf5-320:amd64 (2.2.0+repack-4) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../12-liblzo2-2_2.10-3+b2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-3+b2) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../13-libqhull-r8.0_2020.2-9_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-9) ... Selecting previously unselected package python-tables-data. Preparing to unpack .../14-python-tables-data_3.11.1-3_all.deb ... Unpacking python-tables-data (3.11.1-3) ... Selecting previously unselected package python3-cpuinfo. Preparing to unpack .../15-python3-cpuinfo_9.0.0+git20221119-3_all.deb ... Unpacking python3-cpuinfo (9.0.0+git20221119-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../16-python3-dateutil_2.9.0-5_all.deb ... Unpacking python3-dateutil (2.9.0-5) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../17-python3-decorator_5.3.1-1_all.deb ... Unpacking python3-decorator (5.3.1-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../18-python3-networkx_3.4.2-6_all.deb ... Unpacking python3-networkx (3.4.2-6) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../19-python3-packaging_26.2-2_all.deb ... Unpacking python3-packaging (26.2-2) ... Selecting previously unselected package python3-numexpr. Preparing to unpack .../20-python3-numexpr_2.14.2-1_amd64.deb ... Unpacking python3-numexpr (2.14.2-1) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../21-python3-pytz_2026.3.post1-1_all.deb ... Unpacking python3-pytz (2026.3.post1-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../22-python3-pandas-lib_2.3.3+dfsg-3+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../23-python3-pandas_2.3.3+dfsg-3_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-3) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../24-python3-pyparsing_3.3.2-2_all.deb ... Unpacking python3-pyparsing (3.3.2-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../25-python3-scipy_1.17.1-5_amd64.deb ... Unpacking python3-scipy (1.17.1-5) ... Selecting previously unselected package python3-tables-lib. Preparing to unpack .../26-python3-tables-lib_3.11.1-3_amd64.deb ... Unpacking python3-tables-lib (3.11.1-3) ... Selecting previously unselected package python3-tables. Preparing to unpack .../27-python3-tables_3.11.1-3_all.deb ... Unpacking python3-tables (3.11.1-3) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../28-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (14.0.0) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libgomp1:amd64 (16.2.0-2) ... Setting up libsnappy1v5:amd64 (1.2.2-2+b2) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-4) ... Setting up libblosc2-7:amd64 (2.23.1+ds-2) ... Setting up libgfortran5:amd64 (16.2.0-2) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libblosc1:amd64 (1.21.5+ds-2+b2) ... Setting up netbase (6.6) ... Setting up readline-common (8.3-4) ... Setting up python-tables-data (3.11.1-3) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libhdf5-320:amd64 (2.2.0+repack-4) ... Setting up libpython3.14-stdlib:amd64 (3.14.7-1) ... Setting up python3.14 (3.14.7-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3 (3.14.7-3) ... Setting up python3-networkx (3.4.2-6) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-packaging (26.2-2) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up python3-cpuinfo (9.0.0+git20221119-3) ... Setting up python3-numpy (1:2.4.6+ds-4) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-scipy (1.17.1-5) ... Setting up python3-tables-lib (3.11.1-3) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Setting up python3-pytz (2026.3.post1-1) ... Setting up python3-pandas (2.3.3+dfsg-3) ... Setting up python3-numexpr (2.14.2-1) ... Setting up python3-tables (3.11.1-3) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-4) ... 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m30.1s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m30.1s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpllqyy778/./tmp/piuparts-depends-dummy.deb 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m30.1s DUMP: piuparts-depends-dummy install ok installed 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m30.2s DUMP: (Reading database ... 14703 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'clean'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'clean'] 0m30.2s DEBUG: Recording chroot state 0m30.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m31.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m32.7s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy'] 0m34.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy', 'python3-mdtraj'] 0m34.0s DUMP: python3-mdtraj: Installed: (none) Candidate: 1.11.1.post1-3+b1 Version table: 1.11.1.post1-3+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy', 'python3-mdtraj'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', 'install', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m35.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: python-mdtraj-doc Recommended packages: python3-gsd python3-netcdf4 The following NEW packages will be installed: python3-mdtraj 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1048 kB of archives. After this operation, 4692 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 python3-mdtraj amd64 1.11.1.post1-3+b1 [1048 kB] Fetched 1048 kB in 0s (20.9 MB/s) Selecting previously unselected package python3-mdtraj. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14703 files and directories currently installed.) Preparing to unpack .../python3-mdtraj_1.11.1.post1-3+b1_amd64.deb ... Unpacking python3-mdtraj (1.11.1.post1-3+b1) ... Setting up python3-mdtraj (1.11.1.post1-3+b1) ... 0m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', 'install', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m35.7s INFO: Running scripts post_install 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_install_exceptions'] 0m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_install_exceptions'] 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'systemd-tmpfiles', '--cat-config'] 0m35.7s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m35.7s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'systemd-tmpfiles', '--cat-config'] 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'remove', 'python3-mdtraj'] 0m36.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: libblas3 libblosc1 libblosc2-7 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 liblapack3 liblzo2-2 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 media-types netbase python-tables-data python3 python3-cpuinfo python3-dateutil python3-decorator python3-minimal python3-networkx python3-numexpr python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pyparsing python3-pytz python3-scipy python3-tables python3-tables-lib python3.14 python3.14-minimal readline-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: python3-mdtraj 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 4692 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14832 files and directories currently installed.) Removing python3-mdtraj (1.11.1.post1-3+b1) ... 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'remove', 'python3-mdtraj'] 0m36.8s INFO: Reinstalling after remove 0m36.8s INFO: Running scripts pre_install 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_database-server'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_database-server'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_exceptions'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_exceptions'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_extras'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_extras'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy'] 0m36.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy'] 0m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy', 'python3-mdtraj'] 0m36.9s DUMP: python3-mdtraj: Installed: (none) Candidate: 1.11.1.post1-3+b1 Version table: 1.11.1.post1-3+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy', 'python3-mdtraj'] 0m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', 'install', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m38.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: python-mdtraj-doc Recommended packages: python3-gsd python3-netcdf4 The following NEW packages will be installed: python3-mdtraj 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1048 kB of archives. After this operation, 4692 kB of additional disk space will be used. Selecting previously unselected package python3-mdtraj. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14703 files and directories currently installed.) Preparing to unpack .../python3-mdtraj_1.11.1.post1-3+b1_amd64.deb ... Unpacking python3-mdtraj (1.11.1.post1-3+b1) ... Setting up python3-mdtraj (1.11.1.post1-3+b1) ... 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', 'install', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m38.3s INFO: Running scripts post_install 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_install_exceptions'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_install_exceptions'] 0m38.3s INFO: Running scripts pre_install 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_database-server'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_database-server'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_exceptions'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_exceptions'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_extras'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_extras'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy'] 0m38.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy', 'python3-mdtraj'] 0m38.4s DUMP: python3-mdtraj: Installed: 1.11.1.post1-3+b1 Candidate: 1.11.1.post1-3+b1 Version table: *** 1.11.1.post1-3+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-cache', 'policy', 'python3-mdtraj'] 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', 'install', '--reinstall', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m40.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/1048 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14832 files and directories currently installed.) Preparing to unpack .../python3-mdtraj_1.11.1.post1-3+b1_amd64.deb ... Unpacking python3-mdtraj (1.11.1.post1-3+b1) over (1.11.1.post1-3+b1) ... Setting up python3-mdtraj (1.11.1.post1-3+b1) ... 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', '-y', 'install', '--reinstall', 'python3-mdtraj=1.11.1.post1-3+b1'] 0m40.1s INFO: Running scripts post_install 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_install_exceptions'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_install_exceptions'] 0m40.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m41.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m42.2s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) 0m42.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpllqyy778', '-ac', '--ignore-obsolete'] 0m44.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpllqyy778', '-ac', '--ignore-obsolete'] 0m44.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m44.5s DUMP: 0.17.5+b5 0m44.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m44.5s INFO: Running adequate version 0.17.5+b5 now. 0m44.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'python3-mdtraj'] 0m44.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'python3-mdtraj'] 0m44.6s INFO: Running scripts pre_remove 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m45.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m45.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_exceptions'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_exceptions'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m45.5s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3+b1 install ok installed bsdutils bsdutils 1:2.42.2-4 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-2 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.2-4 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libblosc2-7:amd64 libblosc2-7 2.23.1+ds-2 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-4 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-4 install ok installed libc6:amd64 libc6 2.43-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.5-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libexpat1:amd64 libexpat1 2.8.4-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-2 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-3+b2 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-4 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-2 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.7-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.7-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-4 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-2+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 262~rc1-2 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262~rc1-2 install ok installed libuuid1:amd64 libuuid1 2.42.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-4 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.2-4 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed python-tables-data python-tables-data 3.11.1-3 install ok installed python3 python3 3.14.7-3 install ok installed python3-cpuinfo python3-cpuinfo 9.0.0+git20221119-3 install ok installed python3-dateutil python3-dateutil 2.9.0-5 install ok installed python3-decorator python3-decorator 5.3.1-1 install ok installed python3-mdtraj python3-mdtraj 1.11.1.post1-3+b1 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-networkx python3-networkx 3.4.2-6 install ok installed python3-numexpr python3-numexpr 2.14.2-1 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-4 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-4 install ok installed python3-packaging python3-packaging 26.2-2 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-3 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-3+b1 install ok installed python3-pyparsing python3-pyparsing 3.3.2-2 install ok installed python3-pytz python3-pytz 2026.3.post1-1 install ok installed python3-scipy python3-scipy 1.17.1-5 install ok installed python3-tables python3-tables 3.11.1-3 install ok installed python3-tables-lib python3-tables-lib 3.11.1-3 install ok installed python3.14 python3.14 3.14.7-1 install ok installed python3.14-minimal python3.14-minimal 3.14.7-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'liblzo2-2:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'python-tables-data', 'python3', 'python3-cpuinfo', 'python3-dateutil', 'python3-decorator', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyparsing', 'python3-pytz', 'python3-scipy', 'python3-tables', 'python3-tables-lib', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-mdtraj'] 0m49.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libblas3 libblosc1 libblosc2-7 libexpat1 libffi8 libgfortran5 libgomp1 libhdf5-320 liblapack3 liblzo2-2 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libreadline8t64 libsnappy1v5 libsqlite3-0 libsz2 media-types netbase python-tables-data python3 python3-cpuinfo python3-dateutil python3-decorator python3-mdtraj python3-minimal python3-networkx python3-numexpr python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pyparsing python3-pytz python3-scipy python3-tables python3-tables-lib python3.14 python3.14-minimal readline-common 0 upgraded, 0 newly installed, 42 to remove and 0 not upgraded. After this operation, 392 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14832 files and directories currently installed.) Removing python3-mdtraj (1.11.1.post1-3+b1) ... Removing python3-scipy (1.17.1-5) ... Removing python3-tables (3.11.1-3) ... Removing python3-tables-lib (3.11.1-3) ... Removing python3-pandas (2.3.3+dfsg-3) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-3+b1) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing libblosc2-7:amd64 (2.23.1+ds-2) ... Removing python3-pytz (2026.3.post1-1) ... Removing python3-numexpr (2.14.2-1) ... Removing python3-packaging (26.2-2) ... Removing libgomp1:amd64 (16.2.0-2) ... Removing libhdf5-320:amd64 (2.2.0+repack-4) ... Removing liblzo2-2:amd64 (2.10-3+b2) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing libsnappy1v5:amd64 (1.2.2-2+b2) ... Removing libsz2:amd64 (1.1.7-1) ... Removing python-tables-data (3.11.1-3) ... Removing python3-cpuinfo (9.0.0+git20221119-3) ... Removing python3-dateutil (2.9.0-5) ... Removing python3-decorator (5.3.1-1) ... Removing python3-networkx (3.4.2-6) ... Removing python3-pyparsing (3.3.2-2) ... Removing python3-numpy (1:2.4.6+ds-4) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.7-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.7-1) ... Removing libexpat1:amd64 (2.8.4-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libgfortran5:amd64 (16.2.0-2) ... Removing libpython3.14-minimal:amd64 (3.14.7-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-4) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-4) ... 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'liblzo2-2:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'python-tables-data', 'python3', 'python3-cpuinfo', 'python3-dateutil', 'python3-decorator', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyparsing', 'python3-pytz', 'python3-scipy', 'python3-tables', 'python3-tables-lib', 'python3.14', 'python3.14-minimal', 'readline-common', 'python3-mdtraj'] 0m49.1s INFO: Running scripts post_remove 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_remove_cleanup'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_remove_cleanup'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_remove_exceptions'] 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_remove_exceptions'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'liblzo2-2:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'python-tables-data', 'python3', 'python3-cpuinfo', 'python3-dateutil', 'python3-decorator', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyparsing', 'python3-pytz', 'python3-scipy', 'python3-tables', 'python3-tables-lib', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m49.1s DUMP: dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libblosc1 which is not installed dpkg: warning: ignoring request to remove libblosc2-7 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblzo2-2 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed (Reading database ... 5522 files and directories currently installed.) Purging configuration files for libpython3.14-minimal:amd64 (3.14.7-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.6) ... dpkg: warning: ignoring request to remove python-tables-data which is not installed Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-cpuinfo which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-networkx which is not installed dpkg: warning: ignoring request to remove python3-numexpr which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-4) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pyparsing which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3-tables which is not installed dpkg: warning: ignoring request to remove python3-tables-lib which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.7-1) ... Purging configuration files for readline-common (8.3-4) ... 0m49.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', 'libblas3:amd64', 'libblosc1:amd64', 'libblosc2-7:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'liblzo2-2:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libreadline8t64:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'python-tables-data', 'python3', 'python3-cpuinfo', 'python3-dateutil', 'python3-decorator', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pyparsing', 'python3-pytz', 'python3-scipy', 'python3-tables', 'python3-tables-lib', 'python3.14', 'python3.14-minimal', 'readline-common'] 0m49.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', 'python3-mdtraj'] 0m49.2s DUMP: dpkg: warning: ignoring request to remove python3-mdtraj which is not installed 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', 'python3-mdtraj'] 0m49.2s INFO: Running scripts post_purge 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_purge_exceptions'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_purge_exceptions'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_purge_manual_cleanup'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_purge_manual_cleanup'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', '--pending'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--purge', '--pending'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--remove', '--pending'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg', '--remove', '--pending'] 0m49.2s INFO: Running scripts post_test 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_test_exceptions'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'tmp/scripts/post_test_exceptions'] 0m49.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m49.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m49.8s DEBUG: No broken symlinks as far as we can find. 0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-divert', '--list'] 0m49.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'dpkg-divert', '--list'] 0m49.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'clean'] 0m49.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpllqyy778', 'apt-get', 'clean'] 0m49.8s DEBUG: Recording chroot state 0m50.8s INFO: PASS: Installation and purging test. 0m51.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/shm'] 0m51.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/shm'] 0m51.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/console'] 0m51.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/console'] 0m51.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/ptmx'] 0m51.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/ptmx'] 0m51.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/pts'] 0m51.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/dev/pts'] 0m51.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/proc'] 0m51.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpllqyy778/proc'] 0m51.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m51.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpllqyy778'] 0m51.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpllqyy778 0m51.3s INFO: PASS: All tests. 0m51.3s INFO: piuparts run ends. ret=0 End: 2026-09-04 05:52:27 GMT