Start: 2025-03-17 09:18:30 GMT Package: q2-alignment Version: 2024.5.0-1 Installed-Size: 69 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-setuptools, python3-skbio, mafft, qiime (>= 2024.5), q2-types (>= 2024.5) Suggests: sina Description: QIIME 2 plugin for generating and manipulating alignments Homepage: https://qiime2.org/ Description-md5: 16319b0f0409648deaf558cab608af9a Section: science Priority: optional Filename: pool/main/q/q2-alignment/q2-alignment_2024.5.0-1_all.deb Size: 12068 MD5sum: 993365709ef0b450c4a53099c38b3c54 SHA256: 401fd0adab8faacee1990bf61cc791d4ca40904ec66ed33fc00abe2eb1298efe Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt q2-alignment=2024.5.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt q2-alignment=2024.5.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9kjekbhq 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9kjekbhq 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9kjekbhq/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp9kjekbhq/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7385 kB] Fetched 17.7 MB in 2s (11.8 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-yf', 'dist-upgrade'] 0m3.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-14-base libgcc-s1 libselinux1 libsemanage-common libsemanage2 libsepol2 libstdc++6 login.defs passwd 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2733 kB of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:5 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.17.3-2 [186 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:7 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:9 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.17.3-2 [1228 kB] Fetched 2733 kB in 0s (33.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-19_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-19) over (14.2.0-18) ... Setting up gcc-14-base:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-19_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-19) over (14.2.0-18) ... Setting up libstdc++6:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-19_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-19) over (14.2.0-18) ... Setting up libgcc-s1:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) over (3.8-4) ... Setting up libselinux1:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.3-2_all.deb ... Unpacking login.defs (1:4.17.3-2) over (1:4.17.3-1) ... Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... Unpacking libsemanage-common (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsemanage2_3.8.1-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8.1-1) over (3.8-1+b1) ... Preparing to unpack .../passwd_1%3a4.17.3-2_amd64.deb ... Unpacking passwd (1:4.17.3-2) over (1:4.17.3-1) ... Setting up login.defs (1:4.17.3-2) ... Setting up libsemanage-common (3.8.1-1) ... Setting up libsepol2:amd64 (3.8.1-1) ... Setting up libsemanage2:amd64 (3.8.1-1) ... Setting up passwd (1:4.17.3-2) ... Processing triggers for libc-bin (2.41-6) ... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-yf', 'dist-upgrade'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: 0582dbe94023bf6cf8b7d535b964b205 - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_fake-essential'] 0m4.4s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.68). The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1757 kB of archives. After this operation, 4946 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0050 [42.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] Preconfiguring packages ... Fetched 1757 kB in 0s (23.6 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4907 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0050_all.deb ... Moving old data out of the way Unpacking ucf (3.0050) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.24) ... Setting up procps (2:4.0.4-7) ... Setting up ucf (3.0050) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-6) ... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_fake-essential'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'clean'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'clean'] 0m4.4s DEBUG: Recording chroot state 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-divert', '--list'] 0m4.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-divert', '--list'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: apt-cache does not know about any of the requested packages 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'show', '--no-all-versions', 'q2-alignment=2024.5.0-1'] 0m5.7s DUMP: Package: q2-alignment Version: 2024.5.0-1 Installed-Size: 69 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-setuptools, python3-skbio, mafft, qiime (>= 2024.5), q2-types (>= 2024.5) Suggests: sina Description-en: QIIME 2 plugin for generating and manipulating alignments QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. Description-md5: 16319b0f0409648deaf558cab608af9a Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-alignment/q2-alignment_2024.5.0-1_all.deb Size: 12068 MD5sum: 993365709ef0b450c4a53099c38b3c54 SHA256: 401fd0adab8faacee1990bf61cc791d4ca40904ec66ed33fc00abe2eb1298efe 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'show', '--no-all-versions', 'q2-alignment=2024.5.0-1'] 0m5.7s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: python3:any, python3-setuptools, python3-skbio, mafft, qiime (>= 2024.5), q2-types (>= 2024.5) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m5.7s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp92y3gzx0/piuparts-depends-dummy'] 0m5.7s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp92y3gzx0/piuparts-depends-dummy.deb'. 0m5.7s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp92y3gzx0/piuparts-depends-dummy'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.7s DUMP: 2.9.33 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.7s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp92y3gzx0/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp9kjekbhq/tmp 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m30.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates javascript-common libaec0 libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgomp1 libgpg-error0 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libicu76 libidn2-0 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libperl5.40 libpgm-5.3-0t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1t64 libssw0 libsz2 libtasn1-6 libunistring5 libxml2 libxslt1.1 libyajl2 libyaml-0-2 libzmq5 mafft media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-types qiime readline-common Suggested packages: apache2 | lighttpd | httpd rng-tools gdbm-l10n gnutls-bin krb5-doc krb5-user perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-biom-format-doc python-blinker-doc python-charset-normalizer-doc python-cryptography-doc python3-cryptography-vectors python3-objgraph python-flask-doc python-flufl.lock-doc python-greenlet-dev python-greenlet-doc python-h5py-doc python-jinja2-doc python-jwt-doc python3-crypto python-lxml-doc python-natsort-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python-patsy-doc python-public-doc python-pyparsing-doc python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python-skbio-doc python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2 python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql python3-cx-oracle python3-oracledb python-statsmodels-doc python3-brotli ipython3 python-werkzeug-doc python3-watchdog python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: libgpg-error-l10n node-jquery krb5-locales libldap-common publicsuffix libsasl2-modules blast2 libwww-perl lynx ruby python3-asgiref python3-dotenv python3-babel python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba r-cran-plotly g++ | c++-compiler python3-pil python3-pooch python3-sqlalchemy-ext python3-joblib python3-colorama python3-cvxopt python3-openssl python3-pyinotify q2cli q2templates q2-cutadapt q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table The following NEW packages will be installed: ca-certificates javascript-common libaec0 libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgomp1 libgpg-error0 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libicu76 libidn2-0 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libperl5.40 libpgm-5.3-0t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1t64 libssw0 libsz2 libtasn1-6 libunistring5 libxml2 libxslt1.1 libyajl2 libyaml-0-2 libzmq5 mafft media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 piuparts-depends-dummy python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-types qiime readline-common 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB/114 MB of archives. After this operation, 616 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [684 B] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [138 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.29+ds-3 [6740 kB] Get:20 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5084 kB] Get:22 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:23 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:24 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-2 [4315 kB] Get:28 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-2 [267 kB] Get:29 http://deb.debian.org/debian sid/main amd64 javascript-common all 12 [5236 B] Get:30 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:36 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:49 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:56 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:62 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b2 [221 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.29+ds-3 [42.7 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libyajl2 amd64 2.1.0-5+b2 [23.3 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get:73 http://deb.debian.org/debian sid/main amd64 mafft amd64 7.505-1 [1078 kB] Get:74 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1521 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-bcrypt amd64 4.2.0-2.1+b1 [211 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:78 http://deb.debian.org/debian sid/main amd64 python3-bibtexparser all 2.0.0b5+really1.4.3-1 [34.3 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.13.0-1+b1 [1065 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.13.0-1 [15.0 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.1-3 [150 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-tz all 2025.1-3 [4004 B] Get:85 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8+b1 [4517 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.15.2-5 [16.3 MB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-biom-format amd64 2.1.16-1+b5 [151 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:92 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.17.1-2+b2 [93.6 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-cryptography amd64 43.0.0-1 [935 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.3.9-1 [83.5 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.17.0-1 [12.7 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.5-2 [107 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-werkzeug all 3.1.3-2 [207 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-flask all 3.1.0-2 [106 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-greenlet amd64 3.1.0-1+b2 [165 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-sqlalchemy all 2.0.32+ds1-1 [1196 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-flask-sqlalchemy all 3.1.1-3 [36.0 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.0.0-1 [220 kB] Get:108 http://deb.debian.org/debian sid/main amd64 python3-public all 4.1.0-2 [7032 B] Get:109 http://deb.debian.org/debian sid/main amd64 python3-flufl.lock all 8.1.0-2 [15.6 kB] Get:110 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4.1.0-1 [12.0 kB] Get:121 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:124 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:126 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.3.1-1+b1 [1288 kB] Get:127 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get:128 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:129 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get:130 http://deb.debian.org/debian sid/main amd64 python3-setproctitle amd64 1.3.5-1 [18.4 kB] Get:131 http://deb.debian.org/debian sid/main amd64 python3-tblib all 3.0.0-6 [13.8 kB] Get:132 http://deb.debian.org/debian sid/main amd64 python3-zmq amd64 26.2.1-1+b1 [182 kB] Get:133 http://deb.debian.org/debian sid/main amd64 python3-parsl all 2025.01.13+ds-1 [276 kB] Get:134 http://deb.debian.org/debian sid/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get:135 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get:136 http://deb.debian.org/debian sid/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b4 [1599 kB] Get:137 http://deb.debian.org/debian sid/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get:138 http://deb.debian.org/debian sid/main amd64 python3-skbio amd64 0.6.2-4+b2 [1398 kB] Get:139 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.13.2-1 [42.7 kB] Get:140 http://deb.debian.org/debian sid/main amd64 python3-tzlocal all 5.3.1-1 [24.2 kB] Get:141 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get:142 http://deb.debian.org/debian sid/main amd64 qiime all 2024.5.0-1 [304 kB] Get:143 http://deb.debian.org/debian sid/main amd64 q2-types all 2024.5.0-1 [5531 kB] Preconfiguring packages ... Fetched 114 MB in 3s (43.6 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5455 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.0-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.46.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-2) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. 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Preparing to unpack .../120-python3-platformdirs_4.3.6-1_all.deb ... Unpacking python3-platformdirs (4.3.6-1) ... Selecting previously unselected package python3-statsmodels-lib:amd64. Preparing to unpack .../121-python3-statsmodels-lib_0.14.4+dfsg-1+b4_amd64.deb ... Unpacking python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b4) ... Selecting previously unselected package python3-statsmodels. Preparing to unpack .../122-python3-statsmodels_0.14.4+dfsg-1_all.deb ... Unpacking python3-statsmodels (0.14.4+dfsg-1) ... Selecting previously unselected package python3-skbio. Preparing to unpack .../123-python3-skbio_0.6.2-4+b2_amd64.deb ... Unpacking python3-skbio (0.6.2-4+b2) ... Selecting previously unselected package python3-tomlkit. Preparing to unpack .../124-python3-tomlkit_0.13.2-1_all.deb ... Unpacking python3-tomlkit (0.13.2-1) ... Selecting previously unselected package python3-tzlocal. Preparing to unpack .../125-python3-tzlocal_5.3.1-1_all.deb ... Unpacking python3-tzlocal (5.3.1-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../126-python3-yaml_6.0.2-1+b2_amd64.deb ... Unpacking python3-yaml (6.0.2-1+b2) ... Selecting previously unselected package qiime. Preparing to unpack .../127-qiime_2024.5.0-1_all.deb ... Unpacking qiime (2024.5.0-1) ... Selecting previously unselected package q2-types. Preparing to unpack .../128-q2-types_2024.5.0-1_all.deb ... Unpacking q2-types (2024.5.0-1) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../129-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (13.0.0) ... Setting up javascript-common (12) ... Setting up libnorm1t64:amd64 (1.5.9+dfsg-3.1+b2) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libsodium23:amd64 (1.0.18-1+b2) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgpg-error0:amd64 (1.51-3) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libjs-popper.js (1.16.1+ds-6) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libsqlite3-0:amd64 (3.46.1-2) ... Setting up libyajl2:amd64 (2.1.0-5+b2) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1+b1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up perl-modules-5.40 (5.40.1-2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.4.1-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libopenblas0-pthread:amd64 (0.3.29+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libperl5.40:amd64 (5.40.1-2) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up perl (5.40.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libopenblas0:amd64 (0.3.29+ds-3) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... Setting up libpython3-stdlib:amd64 (3.13.2-2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up python3.13 (3.13.2-2) ... Setting up mafft (7.505-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.2-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-psutil (7.0.0-1) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-dill (0.3.9-1) ... Setting up python3-greenlet (3.1.0-1+b2) ... Setting up python3-setproctitle:amd64 (1.3.5-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-5) ... Setting up python3-urllib3 (2.3.0-2) ... Setting up python3-hdmedians (0.14.2-6+b1) ... Setting up python3-lxml:amd64 (5.3.1-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.3-1) ... Setting up python3-tzlocal (5.3.1-1) ... Setting up python3-tomlkit (0.13.2-1) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b4) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b2) ... Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-filelock (3.17.0-1) ... Setting up python3-scipy (1.15.2-5) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-tblib (3.0.0-6) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.12.1-3) ... Setting up python3-ijson (3.3.0-1+b2) ... Setting up python3-jwt (2.10.1-2) ... Setting up python3-public (4.1.0-2) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-sqlalchemy (2.0.32+ds1-1) ... Setting up python3-flufl.lock (8.1.0-2) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-zmq (26.2.1-1+b1) ... Setting up python3-cryptography (43.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up python3-globus-sdk (3.51.0-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-h5py-serial (3.13.0-1+b1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-h5py (3.13.0-1) ... Setting up python3-flask-sqlalchemy (3.1.1-3) ... Setting up python3-parsl (2025.01.13+ds-1) ... Setting up qiime (2024.5.0-1) ... Setting up python3-biom-format (2.1.16-1+b5) ... Setting up python3-skbio (0.6.2-4+b2) ... Setting up q2-types (2024.5.0-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m30.4s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m30.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp9kjekbhq/./tmp/piuparts-depends-dummy.deb 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m30.4s DUMP: piuparts-depends-dummy install ok installed 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m30.5s DUMP: (Reading database ... 27037 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'clean'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'clean'] 0m30.5s DEBUG: Recording chroot state 0m30.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m31.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m33.6s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js 0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy'] 0m34.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy', 'q2-alignment'] 0m34.1s DUMP: q2-alignment: Installed: (none) Candidate: 2024.5.0-1 Version table: 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy', 'q2-alignment'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', 'install', 'q2-alignment=2024.5.0-1'] 0m34.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: sina The following NEW packages will be installed: q2-alignment 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 kB of archives. After this operation, 70.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 q2-alignment all 2024.5.0-1 [12.1 kB] Fetched 12.1 kB in 0s (47.1 kB/s) Selecting previously unselected package q2-alignment. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27037 files and directories currently installed.) Preparing to unpack .../q2-alignment_2024.5.0-1_all.deb ... Unpacking q2-alignment (2024.5.0-1) ... Setting up q2-alignment (2024.5.0-1) ... 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', 'install', 'q2-alignment=2024.5.0-1'] 0m34.9s INFO: Running scripts post_install 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_install_exceptions'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_install_exceptions'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'systemd-tmpfiles', '--cat-config'] 0m34.9s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m34.9s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'systemd-tmpfiles', '--cat-config'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'remove', 'q2-alignment'] 0m35.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: javascript-common libaec0 libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgfortran5 libgnutls30t64 libgomp1 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libicu76 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libpgm-5.3-0t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1t64 libssw0 libsz2 libtasn1-6 libxml2 libxslt1.1 libyajl2 libyaml-0-2 libzmq5 mafft media-types node-fortawesome-fontawesome-free python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-types qiime readline-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: q2-alignment 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 70.7 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27065 files and directories currently installed.) Removing q2-alignment (2024.5.0-1) ... 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'remove', 'q2-alignment'] 0m35.4s INFO: Reinstalling after remove 0m35.4s INFO: Running scripts pre_install 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_extras'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_extras'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy'] 0m35.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy', 'q2-alignment'] 0m35.5s DUMP: q2-alignment: Installed: (none) Candidate: 2024.5.0-1 Version table: 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy', 'q2-alignment'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', 'install', 'q2-alignment=2024.5.0-1'] 0m36.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: sina The following NEW packages will be installed: q2-alignment 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/12.1 kB of archives. After this operation, 70.7 kB of additional disk space will be used. Selecting previously unselected package q2-alignment. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27037 files and directories currently installed.) Preparing to unpack .../q2-alignment_2024.5.0-1_all.deb ... Unpacking q2-alignment (2024.5.0-1) ... Setting up q2-alignment (2024.5.0-1) ... 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', 'install', 'q2-alignment=2024.5.0-1'] 0m36.0s INFO: Running scripts post_install 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_install_exceptions'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_install_exceptions'] 0m36.0s INFO: Running scripts pre_install 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_database-server'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_database-server'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_exceptions'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_exceptions'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_extras'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_extras'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy'] 0m36.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy', 'q2-alignment'] 0m36.1s DUMP: q2-alignment: Installed: 2024.5.0-1 Candidate: 2024.5.0-1 Version table: *** 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-cache', 'policy', 'q2-alignment'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', 'install', '--reinstall', 'q2-alignment=2024.5.0-1'] 0m36.6s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/12.1 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27065 files and directories currently installed.) Preparing to unpack .../q2-alignment_2024.5.0-1_all.deb ... Unpacking q2-alignment (2024.5.0-1) over (2024.5.0-1) ... Setting up q2-alignment (2024.5.0-1) ... 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', '-y', 'install', '--reinstall', 'q2-alignment=2024.5.0-1'] 0m36.6s INFO: Running scripts post_install 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_install_exceptions'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_install_exceptions'] 0m36.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m37.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m39.4s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) 0m40.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', '-ac', '--ignore-obsolete'] 0m42.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', '-ac', '--ignore-obsolete'] 0m42.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.3s DUMP: 0.15.6 0m42.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.3s INFO: Running adequate version 0.15.6 now. 0m42.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'q2-alignment'] 0m42.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'q2-alignment'] 0m42.3s INFO: Running scripts pre_remove 0m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_exceptions'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_exceptions'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.6s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed javascript-common javascript-common 12 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.12.1-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libexpat1:amd64 libexpat1 2.7.0-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libicu76:amd64 libicu76 76.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzf1:amd64 liblzf1 3.6-4+b3 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libnorm1t64:amd64 libnorm1t64 1.5.9+dfsg-3.1+b2 install ok installed libopenblas0:amd64 libopenblas0 0.3.29+ds-3 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.29+ds-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-2 install ok installed libpgm-5.3-0t64:amd64 libpgm-5.3-0t64 5.3.128~dfsg-2.1+b1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libsodium23:amd64 libsodium23 1.0.18-1+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libssw0:amd64 libssw0 1.1-15+b2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libunistring5:amd64 libunistring5 1.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.3+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyajl2:amd64 libyajl2 2.1.0-5+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libzmq5:amd64 libzmq5 4.3.5-1+b3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mafft mafft 7.505-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 6.7.2+ds1-1 install ok installed openssl openssl 3.4.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl perl 5.40.1-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed python3 python3 3.13.2-2 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-bcrypt python3-bcrypt 4.2.0-2.1+b1 install ok installed python3-bibtexparser python3-bibtexparser 2.0.0b5+really1.4.3-1 install ok installed python3-biom-format python3-biom-format 2.1.16-1+b5 install ok installed python3-blinker python3-blinker 1.9.0-1 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.17.1-2+b2 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.1-1+b1 install ok installed python3-click python3-click 8.2.0+0.really.8.1.8-1 install ok installed python3-cryptography python3-cryptography 43.0.0-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dill python3-dill 0.3.9-1 install ok installed python3-filelock python3-filelock 3.17.0-1 install ok installed python3-flask python3-flask 3.1.0-2 install ok installed python3-flask-sqlalchemy python3-flask-sqlalchemy 3.1.1-3 install ok installed python3-flufl.lock python3-flufl.lock 8.1.0-2 install ok installed python3-globus-sdk python3-globus-sdk 3.51.0-1 install ok installed python3-greenlet python3-greenlet 3.1.0-1+b2 install ok installed python3-h5py python3-h5py 3.13.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.13.0-1+b1 install ok installed python3-hdmedians python3-hdmedians 0.14.2-6+b1 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-ijson python3-ijson 3.3.0-1+b2 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-itsdangerous python3-itsdangerous 2.2.0-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.5-2 install ok installed python3-jwt python3-jwt 2.10.1-2 install ok installed python3-lxml:amd64 python3-lxml 5.3.1-1+b1 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b3 install ok installed python3-minimal python3-minimal 3.13.2-2 install ok installed python3-more-itertools python3-more-itertools 10.6.0-1 install ok installed python3-natsort python3-natsort 8.0.2-2 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:2.2.3+ds-5 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.3+ds-5 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-8 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-8+b1 install ok installed python3-parsl python3-parsl 2025.01.13+ds-1 install ok installed python3-patsy python3-patsy 1.0.1-1 install ok installed python3-pkg-resources python3-pkg-resources 75.8.0-1 install ok installed python3-platformdirs python3-platformdirs 4.3.6-1 install ok installed python3-psutil python3-psutil 7.0.0-1 install ok installed python3-public python3-public 4.1.0-2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pytz python3-pytz 2025.1-3 install ok installed python3-requests python3-requests 2.32.3+dfsg-4 install ok installed python3-scipy python3-scipy 1.15.2-5 install ok installed python3-setproctitle:amd64 python3-setproctitle 1.3.5-1 install ok installed python3-setuptools python3-setuptools 75.8.0-1 install ok installed python3-skbio python3-skbio 0.6.2-4+b2 install ok installed python3-sqlalchemy python3-sqlalchemy 2.0.32+ds1-1 install ok installed python3-statsmodels python3-statsmodels 0.14.4+dfsg-1 install ok installed python3-statsmodels-lib:amd64 python3-statsmodels-lib 0.14.4+dfsg-1+b4 install ok installed python3-tblib python3-tblib 3.0.0-6 install ok installed python3-tomlkit python3-tomlkit 0.13.2-1 install ok installed python3-typeguard python3-typeguard 4.4.2-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tz python3-tz 2025.1-3 install ok installed python3-tzlocal python3-tzlocal 5.3.1-1 install ok installed python3-urllib3 python3-urllib3 2.3.0-2 install ok installed python3-werkzeug python3-werkzeug 3.1.3-2 install ok installed python3-yaml python3-yaml 6.0.2-1+b2 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3-zmq python3-zmq 26.2.1-1+b1 install ok installed python3.13 python3.13 3.13.2-2 install ok installed python3.13-minimal python3.13-minimal 3.13.2-2 install ok installed q2-alignment q2-alignment 2024.5.0-1 install ok installed q2-types q2-types 2024.5.0-1 install ok installed qiime qiime 2024.5.0-1 install ok installed readline-common readline-common 8.2-6 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpgm-5.3-0t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'mafft', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'readline-common', 'q2-alignment'] 0m47.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates javascript-common libaec0 libblas3 libbrotli1 libcom-err2 libcurl4t64 libexpat1 libffi8 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgomp1 libgpg-error0 libgssapi-krb5-2 libhdf5-310 libhdf5-hl-310 libicu76 libidn2-0 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libperl5.40 libpgm-5.3-0t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1t64 libssw0 libsz2 libtasn1-6 libunistring5 libxml2 libxslt1.1 libyajl2 libyaml-0-2 libzmq5 mafft media-types netbase node-fortawesome-fontawesome-free openssl perl perl-modules-5.40 python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-alignment q2-types qiime readline-common 0 upgraded, 0 newly installed, 143 to remove and 0 not upgraded. After this operation, 616 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27065 files and directories currently installed.) Removing q2-alignment (2024.5.0-1) ... Removing q2-types (2024.5.0-1) ... Removing python3-skbio (0.6.2-4+b2) ... Removing qiime (2024.5.0-1) ... Removing python3-parsl (2025.01.13+ds-1) ... Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (12) ... Removing python3-biom-format (2.1.16-1+b5) ... Removing python3-h5py (3.13.0-1) ... Removing python3-h5py-serial (3.13.0-1+b1) ... Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing python3-statsmodels (0.14.4+dfsg-1) ... Removing python3-scipy (1.15.2-5) ... Removing python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b4) ... Removing python3-hdmedians (0.14.2-6+b1) ... Removing python3-pandas (2.2.3+dfsg-8) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-8+b1) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libblas3:amd64 (3.12.1-2) ... Removing libcurl4t64:amd64 (8.12.1-3) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing python3-zmq (26.2.1-1+b1) ... Removing libzmq5:amd64 (4.3.5-1+b3) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-1+b1) ... Removing python3-yaml (6.0.2-1+b2) ... Removing python3-flask-sqlalchemy (3.1.1-3) ... Removing python3-sqlalchemy (2.0.32+ds1-1) ... Removing python3-networkx (3.2.1-5) ... Removing python3-setuptools (75.8.0-1) ... Removing python3-jaraco.text (4.0.0-1) ... Removing python3-setproctitle:amd64 (1.3.5-1) ... Removing python3-zipp (3.21.0-1) ... Removing python3-globus-sdk (3.51.0-1) ... Removing python3-cryptography (43.0.0-1) ... Removing python3-cffi-backend:amd64 (1.17.1-2+b2) ... Removing python3-lxml:amd64 (5.3.1-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1.1+b1) ... Removing libgcrypt20:amd64 (1.11.0-7) ... Removing mafft (7.505-1) ... Removing perl (5.40.1-2) ... Removing libperl5.40:amd64 (5.40.1-2) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libopenblas0:amd64 (0.3.29+ds-3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing libgpg-error0:amd64 (1.51-3) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Removing libicu76:amd64 (76.1-3) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libldap2:amd64 (2.6.9+dfsg-2) ... Removing liblzf1:amd64 (3.6-4+b3) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libnorm1t64:amd64 (1.5.9+dfsg-3.1+b2) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1+b1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libsodium23:amd64 (1.0.18-1+b2) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libssw0:amd64 (1.1-15+b2) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-1) ... Removing python3-ijson (3.3.0-1+b2) ... Removing libyajl2:amd64 (2.1.0-5+b2) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... Removing perl-modules-5.40 (5.40.1-2) ... Removing python3-bcrypt (4.2.0-2.1+b1) ... Removing python3-bibtexparser (2.0.0b5+really1.4.3-1) ... Removing python3-flask (3.1.0-2) ... Removing python3-blinker (1.9.0-1) ... Removing python3-click (8.2.0+0.really.8.1.8-1) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-dill (0.3.9-1) ... Removing python3-filelock (3.17.0-1) ... Removing python3-flufl.lock (8.1.0-2) ... Removing python3-greenlet (3.1.0-1+b2) ... Removing python3-itsdangerous (2.2.0-2) ... Removing python3-jinja2 (3.1.5-2) ... Removing python3-jwt (2.10.1-2) ... Removing python3-werkzeug (3.1.3-2) ... Removing python3-markupsafe (2.1.5-1+b3) ... Removing python3-natsort (8.0.2-2) ... Removing python3-packaging (24.2-1) ... Removing python3-patsy (1.0.1-1) ... Removing python3-platformdirs (4.3.6-1) ... Removing python3-psutil (7.0.0-1) ... Removing python3-public (4.1.0-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-tz (2025.1-3) ... Removing python3-pytz (2025.1-3) ... Removing python3-tblib (3.0.0-6) ... Removing python3-tomlkit (0.13.2-1) ... Removing python3-tzlocal (5.3.1-1) ... Removing python3-requests (2.32.3+dfsg-4) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-numpy (1:2.2.3+ds-5) ... Removing python3-pkg-resources (75.8.0-1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.2-1) ... Removing libopenblas0-pthread:amd64 (0.3.29+ds-3) ... Removing libgfortran5:amd64 (14.2.0-19) ... Removing openssl (3.4.1-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.1-1+b1) ... Removing python3-idna (3.10-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.6.0-1) ... Removing python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... Removing python3-typing-extensions (4.12.2-2) ... Removing python3-urllib3 (2.3.0-2) ... Removing python3 (3.13.2-2) ... Removing python3-minimal (3.13.2-2) ... Removing python3.13 (3.13.2-2) ... Removing python3.13-minimal (3.13.2-2) ... Removing libexpat1:amd64 (2.7.0-1) ... Removing libpython3-stdlib:amd64 (3.13.2-2) ... Removing libpython3.13-stdlib:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.7-1) ... Removing libpython3.13-minimal:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-2) ... Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.41-6) ... 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpgm-5.3-0t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'mafft', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'readline-common', 'q2-alignment'] 0m47.9s INFO: Running scripts post_remove 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_remove_cleanup'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_remove_cleanup'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_remove_exceptions'] 0m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_remove_exceptions'] 0m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', 'ca-certificates', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpgm-5.3-0t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'mafft', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'readline-common'] 0m48.0s DUMP: (Reading database ... 5474 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for javascript-common (12) ... dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgcrypt20 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed dpkg: warning: ignoring request to remove libicu76 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed Purging configuration files for libjs-bootstrap4 (4.6.1+dfsg1-4) ... Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Purging configuration files for libjs-popper.js (1.16.1+ds-6) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libnorm1t64 which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpgm-5.3-0t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.2-2) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libyajl2 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libzmq5 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for media-types (13.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove node-fortawesome-fontawesome-free which isn't installed Purging configuration files for openssl (3.4.1-1) ... Purging configuration files for perl (5.40.1-2) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed Purging configuration files for python3 (3.13.2-2) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-bibtexparser which isn't installed dpkg: warning: ignoring request to remove python3-biom-format which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dill which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-flask which isn't installed dpkg: warning: ignoring request to remove python3-flask-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-flufl.lock which isn't installed dpkg: warning: ignoring request to remove python3-globus-sdk which isn't installed dpkg: warning: ignoring request to remove python3-greenlet which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-hdmedians which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-ijson which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-itsdangerous which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.text which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-natsort which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed Purging configuration files for python3-numpy (1:2.2.3+ds-5) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parsl which isn't installed dpkg: warning: ignoring request to remove python3-patsy which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-public which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setproctitle which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-skbio which isn't installed dpkg: warning: ignoring request to remove python3-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-statsmodels which isn't installed dpkg: warning: ignoring request to remove python3-statsmodels-lib which isn't installed dpkg: warning: ignoring request to remove python3-tblib which isn't installed dpkg: warning: ignoring request to remove python3-tomlkit which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-tzlocal which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-werkzeug which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zmq which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.2-2) ... dpkg: warning: ignoring request to remove q2-types which isn't installed dpkg: warning: ignoring request to remove qiime which isn't installed Purging configuration files for readline-common (8.2-6) ... 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', 'ca-certificates', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpgm-5.3-0t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'mafft', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'readline-common'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', 'q2-alignment'] 0m48.0s DUMP: dpkg: warning: ignoring request to remove q2-alignment which isn't installed 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', 'q2-alignment'] 0m48.0s INFO: Running scripts post_purge 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_purge_exceptions'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_purge_exceptions'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_purge_manual_cleanup'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_purge_manual_cleanup'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', '--pending'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--purge', '--pending'] 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--remove', '--pending'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg', '--remove', '--pending'] 0m48.0s INFO: Running scripts post_test 0m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_test_exceptions'] 0m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'tmp/scripts/post_test_exceptions'] 0m48.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m48.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m48.5s DEBUG: No broken symlinks as far as we can find. 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-divert', '--list'] 0m48.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'dpkg-divert', '--list'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'clean'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq', 'apt-get', 'clean'] 0m48.5s DEBUG: Recording chroot state 0m49.5s INFO: PASS: Installation and purging test. 0m49.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/shm'] 0m49.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/shm'] 0m49.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/console'] 0m49.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/console'] 0m49.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/ptmx'] 0m49.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/ptmx'] 0m49.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/pts'] 0m49.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/dev/pts'] 0m49.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/proc'] 0m49.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq/proc'] 0m49.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m49.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9kjekbhq'] 0m49.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9kjekbhq 0m49.8s INFO: PASS: All tests. 0m49.8s INFO: piuparts run ends. ret=0 End: 2025-03-17 09:19:20 GMT