Start: 2025-04-09 19:03:03 GMT Package: q2-dada2 Version: 2024.5.0-1 Installed-Size: 2289 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2 (>= 1.24.0+dfsg-2~), r-cran-optparse, qiime (>= 2024.5), q2-types (>= 2024.5), python3-biom-format, python3-skbio Description: QIIME 2 plugin to work with adapters in sequence data Homepage: https://qiime2.org/ Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2024.5.0-1_amd64.deb Size: 1814420 MD5sum: 49b8582c0f0884d6509b95311c7dd0a2 SHA256: 155a841622898e2c8b7256181de1edba325e3bb0885aa06d4903acd2b4ca816f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt q2-dada2=2024.5.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt q2-dada2=2024.5.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpdng0b6_o 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpdng0b6_o 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpdng0b6_o/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpdng0b6_o/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'update'] 0m2.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7417 kB] Fetched 17.8 MB in 2s (10.7 MB/s) Reading package lists... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'update'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bash coreutils libssl3t64 openssl-provider-legacy 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7251 kB of archives. After this operation, 824 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.37-2 [1500 kB] Get:2 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.7-1 [3012 kB] Get:3 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.0-1 [307 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.0-1 [2432 kB] Fetched 7251 kB in 0s (65.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4927 files and directories currently installed.) Preparing to unpack .../bash_5.2.37-2_amd64.deb ... Unpacking bash (5.2.37-2) over (5.2.37-1.1+b2) ... Setting up bash (5.2.37-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4926 files and directories currently installed.) Preparing to unpack .../coreutils_9.7-1_amd64.deb ... Unpacking coreutils (9.7-1) over (9.6-2) ... Setting up coreutils (9.7-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4926 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.0-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.0-1) over (3.4.1-1) ... Setting up openssl-provider-legacy (3.5.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4926 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.0-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.0-1) over (3.4.1-1) ... Setting up libssl3t64:amd64 (3.5.0-1) ... Processing triggers for debianutils (5.21) ... Processing triggers for libc-bin (2.41-6) ... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s DUMP: 31e44ff00e610efb534d9d62a0a21228 - 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s INFO: Running scripts post_setup 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_fake-essential'] 0m4.6s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.68). The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1757 kB of archives. After this operation, 4947 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0051 [42.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] Preconfiguring packages ... Fetched 1757 kB in 0s (23.7 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4925 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0051_all.deb ... Moving old data out of the way Unpacking ucf (3.0051) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.24) ... Setting up procps (2:4.0.4-7) ... Setting up ucf (3.0051) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-6) ... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_fake-essential'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_minimize'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_setup_zz_backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'clean'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'clean'] 0m4.7s DEBUG: Recording chroot state 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2 install ok installed bsdutils bsdutils 1:2.41-3 install ok installed coreutils coreutils 9.7-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-3 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libuuid1:amd64 libuuid1 2.41-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-3 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-1 install ok installed ucf ucf 3.0051 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-divert', '--list'] 0m5.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-divert', '--list'] 0m5.0s INFO: Running scripts is_testable 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/is_testable_uninstallable'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/is_testable_uninstallable'] 0m5.0s INFO: apt-cache does not know about any of the requested packages 0m5.0s INFO: Running scripts pre_test 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_test_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_test_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_test_root_password'] 0m5.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_test_root_password'] 0m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 0m5.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 0m5.4s DEBUG: No broken symlinks as far as we can find. 0m5.4s INFO: Running scripts pre_install 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_database-server'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_database-server'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2=2024.5.0-1'] 0m6.0s DUMP: Package: q2-dada2 Version: 2024.5.0-1 Installed-Size: 2289 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2 (>= 1.24.0+dfsg-2~), r-cran-optparse, qiime (>= 2024.5), q2-types (>= 2024.5), python3-biom-format, python3-skbio Description-en: QIIME 2 plugin to work with adapters in sequence data QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. . This package wraps the dada2 R package in BioConductor for modeling and correcting Illumina-sequenced amplicon errors. This was shown to improve the sensitivity of diversity analyses. Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2024.5.0-1_amd64.deb Size: 1814420 MD5sum: 49b8582c0f0884d6509b95311c7dd0a2 SHA256: 155a841622898e2c8b7256181de1edba325e3bb0885aa06d4903acd2b4ca816f 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2=2024.5.0-1'] 0m6.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: python3:any, r-base-core, r-bioc-dada2 (>= 1.24.0+dfsg-2~), r-cran-optparse, qiime (>= 2024.5), q2-types (>= 2024.5), python3-biom-format, python3-skbio Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m6.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp_a8nzx33/piuparts-depends-dummy'] 0m6.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp_a8nzx33/piuparts-depends-dummy.deb'. 0m6.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp_a8nzx33/piuparts-depends-dummy'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m6.0s DUMP: 3.0.0 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m6.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp_a8nzx33/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpdng0b6_o/tmp 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m38.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono javascript-common libaec0 libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgcrypt20 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libhwloc15 libice6 libicu76 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpgm-5.3-0t64 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsodium23 libssh2-1t64 libssw0 libstdc++-14-dev libsz2 libtasn1-6 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6t64 libyajl2 libyaml-0-2 libzmq5 linux-libc-dev littler media-types netbase node-fortawesome-fontawesome-free openssl python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bitops r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-deldir r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: apache2 | lighttpd | httpd libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libhwloc-contrib-plugins libstdc++-14-doc libtbb-doc tcl8.6 tk8.6 python3-doc python3-tk python3-venv python-biom-format-doc python-blinker-doc python-charset-normalizer-doc python-cryptography-doc python3-cryptography-vectors python3-objgraph python-flask-doc python-flufl.lock-doc python-greenlet-dev python-greenlet-doc python-h5py-doc python-jinja2-doc python-jwt-doc python3-crypto python-lxml-doc python-natsort-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python-patsy-doc python-public-doc python-pyparsing-doc python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python-skbio-doc python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2 python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql python3-cx-oracle python3-oracledb python-statsmodels-doc python3-brotli ipython3 python-werkzeug-doc python3-watchdog python3.13-venv python3.13-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-all r-cran-runit r-bioc-golubesets r-bioc-biocstyle r-cran-knitr r-bioc-limma r-bioc-hdf5array r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-cran-testthat r-cran-covr r-cran-rmarkdown r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-rtracklayer r-bioc-edger r-bioc-txdbmaker r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-cran-digest r-bioc-sparsematrixstats r-bioc-graph r-bioc-biomart r-bioc-experimenthub r-bioc-rhdf5 r-bioc-singlecellexperiment r-cran-dbi r-cran-rmariadb r-cran-polyclip r-cran-sp r-cran-gridextra r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-inline r-cran-rmpi r-cran-rlecuyer readline-doc Recommended packages: manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n libhwloc-plugins node-jquery krb5-locales libldap-common publicsuffix libsasl2-modules python3-asgiref python3-dotenv python3-babel python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-tz python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba r-cran-plotly g++ | c++-compiler python3-pil python3-pooch python3-sqlalchemy-ext python3-joblib python3-colorama python3-cvxopt python3-openssl python3-pyinotify q2cli q2templates q2-cutadapt q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-callr r-cran-covr r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-viridis r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-mockery r-cran-progress r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils r-cran-unitizer r-cran-testit r-cran-survival r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-dbi r-cran-rsqlite r-cran-waldo r-cran-readr r-cran-r.rsp r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-sodium r-cran-bit64 r-cran-diagrammer r-cran-formattable r-cran-lubridate r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-runit r-cran-fs r-cran-usethis r-cran-dichromat r-cran-hms r-cran-blob r-cran-evaluate r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr r-cran-generics r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono javascript-common libaec0 libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgcrypt20 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libhwloc15 libice6 libicu76 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpgm-5.3-0t64 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsodium23 libssh2-1t64 libssw0 libstdc++-14-dev libsz2 libtasn1-6 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6t64 libyajl2 libyaml-0-2 libzmq5 linux-libc-dev littler media-types netbase node-fortawesome-fontawesome-free openssl piuparts-depends-dummy python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bitops r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-deldir r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 297 newly installed, 0 to remove and 0 not upgraded. Need to get 284 MB/284 MB of archives. After this operation, 1072 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [718 B] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.3-1 [861 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.3-1 [2210 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.3-1 [1954 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.3-1 [751 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.3-1 [28.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.29+ds-3 [6740 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:21 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.0-1 [1491 kB] Get:22 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:26 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:27 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:28 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:30 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:31 http://deb.debian.org/debian sid/main amd64 javascript-common all 12 [5236 B] Get:32 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:35 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:37 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-6 [57.0 kB] Get:44 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.21-1 [2542 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:46 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-6 [1988 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get:50 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:51 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-5 [9316 B] Get:66 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:79 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:91 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Get:94 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:102 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:103 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b2 [221 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.29+ds-3 [42.7 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.0 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libtbbmalloc2 amd64 2022.1.0-1 [50.2 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libtbb12 amd64 2022.1.0-1 [91.7 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libtbb-dev amd64 2022.1.0-1 [201 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libyajl2 amd64 2.1.0-5+b2 [23.3 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get:136 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB] Get:137 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB] Get:138 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:139 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.3-1+b1 [28.3 MB] Get:140 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.21-1 [107 kB] Get:141 http://deb.debian.org/debian sid/main amd64 littler all 0.3.21-1 [16.9 kB] Get:142 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1521 kB] Get:143 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:144 http://deb.debian.org/debian sid/main amd64 python3-bcrypt amd64 4.2.0-2.1+b1 [211 kB] Get:145 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:146 http://deb.debian.org/debian sid/main amd64 python3-bibtexparser all 2.0.0b5+really1.4.3-1 [34.3 kB] Get:147 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.13.0-1+b1 [1065 kB] Get:148 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.13.0-1 [15.0 kB] Get:149 http://deb.debian.org/debian sid/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get:150 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:151 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.2-1 [151 kB] Get:152 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get:153 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get:154 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.2.1-1 [32.9 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.15.2-7 [16.3 MB] Get:156 http://deb.debian.org/debian sid/main amd64 python3-biom-format amd64 2.1.16-1+b5 [151 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:159 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.17.1-2+b2 [93.6 kB] Get:160 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:161 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get:162 http://deb.debian.org/debian sid/main amd64 python3-cryptography amd64 43.0.0-2 [941 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.3.9-1 [83.5 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.18.0-1 [12.8 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-werkzeug all 3.1.3-2 [207 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3-flask all 3.1.0-2 [106 kB] Get:170 http://deb.debian.org/debian sid/main amd64 python3-greenlet amd64 3.1.0-1+b2 [165 kB] Get:171 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.13.1-1 [90.2 kB] Get:172 http://deb.debian.org/debian sid/main amd64 python3-sqlalchemy all 2.0.40+ds1-1 [1210 kB] Get:173 http://deb.debian.org/debian sid/main amd64 python3-flask-sqlalchemy all 3.1.1-4 [36.1 kB] Get:174 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.0.0-1 [220 kB] Get:175 http://deb.debian.org/debian sid/main amd64 python3-public all 4.1.0-2 [7032 B] Get:176 http://deb.debian.org/debian sid/main amd64 python3-flufl.lock all 8.1.0-2 [15.6 kB] Get:177 http://deb.debian.org/debian sid/main amd64 python3-jwt all 2.10.1-2 [31.3 kB] Get:178 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:179 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.3.0-2 [114 kB] Get:180 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:181 http://deb.debian.org/debian sid/main amd64 python3-globus-sdk all 3.54.0-1 [315 kB] Get:182 http://deb.debian.org/debian sid/main amd64 python3-hdmedians amd64 0.14.2-6+b1 [121 kB] Get:183 http://deb.debian.org/debian sid/main amd64 python3-ijson amd64 3.3.0-1+b2 [40.7 kB] Get:184 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get:185 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:186 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:187 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:188 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get:189 http://deb.debian.org/debian sid/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:190 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:191 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get:192 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:193 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.3.2-1 [1297 kB] Get:194 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get:195 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:196 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get:197 http://deb.debian.org/debian sid/main amd64 python3-setproctitle amd64 1.3.5-1 [18.4 kB] Get:198 http://deb.debian.org/debian sid/main amd64 python3-tblib all 3.1.0-1 [13.8 kB] Get:199 http://deb.debian.org/debian sid/main amd64 python3-zmq amd64 26.2.1-1+b1 [182 kB] Get:200 http://deb.debian.org/debian sid/main amd64 python3-parsl all 2025.01.13+ds-1 [276 kB] Get:201 http://deb.debian.org/debian sid/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get:202 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:203 http://deb.debian.org/debian sid/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b4 [1599 kB] Get:204 http://deb.debian.org/debian sid/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get:205 http://deb.debian.org/debian sid/main amd64 python3-skbio amd64 0.6.2-4+b2 [1398 kB] Get:206 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.13.2-1 [42.7 kB] Get:207 http://deb.debian.org/debian sid/main amd64 python3-tzlocal all 5.3.1-1 [24.2 kB] Get:208 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get:209 http://deb.debian.org/debian sid/main amd64 qiime all 2024.5.0-1 [304 kB] Get:210 http://deb.debian.org/debian sid/main amd64 q2-types all 2024.5.0-1 [5531 kB] Get:211 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get:212 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.66.0-2 [2316 kB] Get:213 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get:214 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:215 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:216 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:217 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:218 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:219 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:220 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB] Get:221 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.40.0-2 [1326 kB] Get:222 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB] Get:223 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.40.1-2 [2309 kB] Get:224 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:225 http://deb.debian.org/debian sid/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B] Get:226 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] Get:227 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 6.2.1+dfsg-1 [195 kB] Get:228 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB] Get:229 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get:232 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB] Get:233 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get:234 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get:235 http://deb.debian.org/debian sid/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB] Get:236 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] Get:237 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB] Get:238 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Get:239 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB] Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.14-1 [2080 kB] Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB] Get:243 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get:244 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.5-1 [1712 kB] Get:245 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:246 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get:247 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get:248 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Get:249 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Get:250 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.168-1 [2329 kB] Get:251 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB] Get:252 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-3-1 [3378 kB] Get:253 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get:254 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get:255 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get:256 http://deb.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get:257 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:258 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get:259 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get:260 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.6-1 [629 kB] Get:261 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:262 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:263 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:264 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] Get:265 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:266 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB] Get:267 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get:268 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get:269 http://deb.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Get:270 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.4-1+b1 [896 kB] Get:271 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:272 http://deb.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:273 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2092 kB] Get:274 http://deb.debian.org/debian sid/main amd64 r-cran-bitops amd64 1.0-9-1 [30.7 kB] Get:275 http://deb.debian.org/debian sid/main amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1335 kB] Get:276 http://deb.debian.org/debian sid/main amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3600 kB] Get:277 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB] Get:278 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.18.1-1 [449 kB] Get:279 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:280 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [702 kB] Get:281 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1372 kB] Get:282 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2076 kB] Get:283 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1116 kB] Get:284 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2161 kB] Get:285 http://deb.debian.org/debian sid/main amd64 r-bioc-pwalign amd64 1.2.0-2 [755 kB] Get:286 http://deb.debian.org/debian sid/main amd64 r-cran-hwriter all 1.3.2.1-1 [110 kB] Get:287 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get:288 http://deb.debian.org/debian sid/main amd64 r-cran-jpeg amd64 0.1-10-1 [30.8 kB] Get:289 http://deb.debian.org/debian sid/main amd64 r-cran-deldir amd64 2.0-4-1 [286 kB] Get:290 http://deb.debian.org/debian sid/main amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1411 kB] Get:291 http://deb.debian.org/debian sid/main amd64 r-cran-interp amd64 1.1-6-1 [1445 kB] Get:292 http://deb.debian.org/debian sid/main amd64 r-cran-latticeextra all 0.6-30-1 [2194 kB] Get:293 http://deb.debian.org/debian sid/main amd64 r-bioc-shortread amd64 1.64.0-3 [5220 kB] Get:294 http://deb.debian.org/debian sid/main amd64 r-cran-rcppparallel amd64 5.1.7+dfsg-6 [313 kB] Get:295 http://deb.debian.org/debian sid/main amd64 r-bioc-dada2 amd64 1.34.0+dfsg-2 [2812 kB] Get:296 http://deb.debian.org/debian sid/main amd64 r-cran-getopt all 1.20.4-1 [38.6 kB] Get:297 http://deb.debian.org/debian sid/main amd64 r-cran-optparse all 1.7.5-1 [83.8 kB] Preconfiguring packages ... Fetched 284 MB in 2s (188 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5473 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... 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Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up liblsan0:amd64 (14.2.0-19) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libitm1:amd64 (14.2.0-19) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libopenblas0-pthread:amd64 (0.3.29+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libtbbbind-2-5:amd64 (2022.1.0-1) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.84.1-1) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libopenblas0:amd64 (0.3.29+ds-3) ... Setting up libxslt1.1:amd64 (1.1.35-1.2) ... Setting up libc6-dev:amd64 (2.41-6) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.3-1) ... Setting up libpython3-stdlib:amd64 (3.13.3-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up fontconfig (2.15.0-2.3) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.3-1) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up libpango-1.0-0:amd64 (1.56.3-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.3-1) ... Setting up libtbb12:amd64 (2022.1.0-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-psutil (7.0.0-1) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-decorator (5.2.1-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-dill (0.3.9-1) ... Setting up python3-greenlet (3.1.0-1+b2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up python3-setproctitle:amd64 (1.3.5-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.1-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-urllib3 (2.3.0-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up python3-hdmedians (0.14.2-6+b1) ... Setting up python3-lxml:amd64 (5.3.2-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libtbb-dev:amd64 (2022.1.0-1) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... Setting up python3-tzlocal (5.3.1-1) ... Setting up python3-tomlkit (0.13.2-1) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b4) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-filelock (3.18.0-1) ... Setting up python3-scipy (1.15.2-7) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-tblib (3.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.13.0-1) ... Setting up python3-ijson (3.3.0-1+b2) ... Setting up python3-jwt (2.10.1-2) ... Setting up python3-public (4.1.0-2) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-pytz (2025.2-1) ... Setting up python3-sqlalchemy (2.0.40+ds1-1) ... Setting up python3-flufl.lock (8.1.0-2) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-9) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-zmq (26.2.1-1+b1) ... Setting up python3-cryptography (43.0.0-2) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up r-base-core (4.4.3-1+b1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-7-1) ... Setting up r-cran-nlme (3.1.168-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up r-cran-formatr (1.14-2) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-r6 (2.6.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-jpeg (0.1-10-1) ... Setting up r-cran-rcppparallel (5.1.7+dfsg-6) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up python3-globus-sdk (3.54.0-1) ... Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... Setting up r-cran-littler (0.3.21-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-rcpp (1.0.14-1) ... Setting up r-cran-curl (6.2.1+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-cran-rlang (1.1.5-1) ... Setting up r-cran-matrixstats (1.5.0-1) ... Setting up littler (0.3.21-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up r-bioc-matrixgenerics (1.18.1-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up r-cran-mime (0.12-2) ... Setting up python3-flask (3.1.0-2) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-fansi (1.0.6-1) ... Setting up r-cran-mass (7.3-65-1) ... Setting up python3-h5py-serial (3.13.0-1+b1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.8.0-1) ... Setting up python3-networkx (3.2.1-5) ... Setting up r-cran-cli (3.6.4-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-9-1) ... Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... Setting up r-cran-deldir (2.0-4-1) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-bioc-biobase (2.66.0-2) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-getopt (1.20.4-1) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up r-cran-stringi (1.8.4-1+b1) ... Setting up r-cran-hwriter (1.3.2.1-1) ... Setting up r-cran-cpp11 (0.5.2-1) ... Setting up r-cran-plyr (1.8.9-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up python3-h5py (3.13.0-1) ... Setting up r-cran-gtable (0.3.6+dfsg-1) ... Setting up r-cran-matrix (1.7-3-1) ... Setting up r-cran-mgcv (1.9-3-1) ... Setting up r-bioc-iranges (2.40.1-2) ... Setting up python3-flask-sqlalchemy (3.1.1-4) ... Setting up r-cran-optparse (1.7.5-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... Setting up r-cran-pillar (1.10.1+dfsg-1) ... Setting up r-cran-openssl (2.3.2+dfsg-1) ... Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-bioc-biocparallel (1.40.0-2) ... Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-3) ... Setting up python3-parsl (2025.01.13+ds-1) ... Setting up qiime (2024.5.0-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-cran-interp (1.1-6-1) ... Setting up python3-biom-format (2.1.16-1+b5) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up python3-skbio (0.6.2-4+b2) ... Setting up q2-types (2024.5.0-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-bioc-xvector (0.46.0-2) ... Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-cran-latticeextra (0.6-30-1) ... Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... Setting up r-bioc-pwalign (1.2.0-2) ... Setting up r-bioc-genomicalignments (1.42.0-2) ... Setting up r-bioc-shortread (1.64.0-3) ... Setting up r-bioc-dada2 (1.34.0+dfsg-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m38.7s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m38.7s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpdng0b6_o/./tmp/piuparts-depends-dummy.deb 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m38.7s DUMP: piuparts-depends-dummy install ok installed 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m38.8s DUMP: (Reading database ... 57455 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'clean'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'clean'] 0m38.8s DEBUG: Recording chroot state 0m39.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 0m41.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 0m44.3s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy'] 0m44.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy'] 0m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy', 'q2-dada2'] 0m44.8s DUMP: q2-dada2: Installed: (none) Candidate: 2024.5.0-1 Version table: 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy', 'q2-dada2'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', 'install', 'q2-dada2=2024.5.0-1'] 0m45.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: q2-dada2 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1814 kB of archives. After this operation, 2344 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 q2-dada2 amd64 2024.5.0-1 [1814 kB] Fetched 1814 kB in 0s (4035 kB/s) Selecting previously unselected package q2-dada2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57455 files and directories currently installed.) Preparing to unpack .../q2-dada2_2024.5.0-1_amd64.deb ... Unpacking q2-dada2 (2024.5.0-1) ... Setting up q2-dada2 (2024.5.0-1) ... 0m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', 'install', 'q2-dada2=2024.5.0-1'] 0m45.8s INFO: Running scripts post_install 0m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_install_exceptions'] 0m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_install_exceptions'] 0m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'systemd-tmpfiles', '--cat-config'] 0m45.8s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m45.8s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'systemd-tmpfiles', '--cat-config'] 0m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'remove', 'q2-dada2'] 0m46.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono javascript-common libaec0 libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libhwloc15 libice6 libicu76 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpgm-5.3-0t64 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsodium23 libssh2-1t64 libssw0 libstdc++-14-dev libsz2 libtasn1-6 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6t64 libyajl2 libyaml-0-2 libzmq5 linux-libc-dev littler media-types netbase node-fortawesome-fontawesome-free python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bitops r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-deldir r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: q2-dada2 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 2344 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57589 files and directories currently installed.) Removing q2-dada2 (2024.5.0-1) ... 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'remove', 'q2-dada2'] 0m46.3s INFO: Reinstalling after remove 0m46.3s INFO: Running scripts pre_install 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_database-server'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_database-server'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_exceptions'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_exceptions'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_extras'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_extras'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy'] 0m46.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy', 'q2-dada2'] 0m46.4s DUMP: q2-dada2: Installed: (none) Candidate: 2024.5.0-1 Version table: 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy', 'q2-dada2'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', 'install', 'q2-dada2=2024.5.0-1'] 0m47.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: q2-dada2 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1814 kB of archives. After this operation, 2344 kB of additional disk space will be used. Selecting previously unselected package q2-dada2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57455 files and directories currently installed.) Preparing to unpack .../q2-dada2_2024.5.0-1_amd64.deb ... Unpacking q2-dada2 (2024.5.0-1) ... Setting up q2-dada2 (2024.5.0-1) ... 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', 'install', 'q2-dada2=2024.5.0-1'] 0m47.0s INFO: Running scripts post_install 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_install_exceptions'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_install_exceptions'] 0m47.0s INFO: Running scripts pre_install 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_database-server'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_database-server'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_exceptions'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_exceptions'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_extras'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_extras'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy'] 0m47.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy', 'q2-dada2'] 0m47.1s DUMP: q2-dada2: Installed: 2024.5.0-1 Candidate: 2024.5.0-1 Version table: *** 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-cache', 'policy', 'q2-dada2'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', 'install', '--reinstall', 'q2-dada2=2024.5.0-1'] 0m47.7s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/1814 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57589 files and directories currently installed.) Preparing to unpack .../q2-dada2_2024.5.0-1_amd64.deb ... Unpacking q2-dada2 (2024.5.0-1) over (2024.5.0-1) ... Setting up q2-dada2 (2024.5.0-1) ... 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', '-y', 'install', '--reinstall', 'q2-dada2=2024.5.0-1'] 0m47.7s INFO: Running scripts post_install 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_install_exceptions'] 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_install_exceptions'] 0m47.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 0m49.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 0m52.7s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) 0m54.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', '-ac', '--ignore-obsolete'] 0m58.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', '-ac', '--ignore-obsolete'] 0m58.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.1s DUMP: 0.15.6 0m58.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.1s INFO: Running adequate version 0.15.6 now. 0m58.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'q2-dada2'] 0m58.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'q2-dada2'] 0m58.2s INFO: Running scripts pre_remove 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_exceptions'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_exceptions'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m1.7s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2 install ok installed bsdutils bsdutils 1:2.41-3 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.7-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.15.0-2.3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed javascript-common javascript-common 12 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libasan8:amd64 libasan8 14.2.0-19 install ok installed libatomic1:amd64 libatomic1 14.2.0-19 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblkid1:amd64 libblkid1 2.41-3 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4.2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc-dev-bin libc-dev-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libc6-dev:amd64 libc6-dev 2.41-6 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1 install ok installed libexpat1:amd64 libexpat1 2.7.1-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-19 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.1-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-4 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-19 install ok installed libhwloc15:amd64 libhwloc15 2.12.0-1 install ok installed libice6:amd64 libice6 2:1.1.1-1 install ok installed libicu76:amd64 libicu76 76.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libitm1:amd64 libitm1 14.2.0-19 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-5 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblsan0:amd64 liblsan0 14.2.0-19 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzf1:amd64 liblzf1 3.6-4+b3 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-3 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libnorm1t64:amd64 libnorm1t64 1.5.9+dfsg-3.1+b2 install ok installed libopenblas0:amd64 libopenblas0 0.3.29+ds-3 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.29+ds-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b2 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpgm-5.3-0t64:amd64 libpgm-5.3-0t64 5.3.128~dfsg-2.1+b1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1.1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.3-1 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.3-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.3-1 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-19 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.6-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3 install ok installed libsodium23:amd64 libsodium23 1.0.18-1+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libssw0:amd64 libssw0 1.1-15+b2 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-19 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtbb-dev:amd64 libtbb-dev 2022.1.0-1 install ok installed libtbb12:amd64 libtbb12 2022.1.0-1 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2022.1.0-1 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2022.1.0-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2+b1 install ok installed libtiff6:amd64 libtiff6 4.7.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1 install ok installed libtsan2:amd64 libtsan2 14.2.0-19 install ok installed libubsan1:amd64 libubsan1 14.2.0-19 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41-3 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxft2:amd64 libxft2 2.3.6-1+b4 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.4 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyajl2:amd64 libyajl2 2.1.0-5+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libzmq5:amd64 libzmq5 4.3.5-1+b3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.21-1 install ok installed littler littler 0.3.21-1 install ok installed login login 1:4.16.0-2+really2.41-3 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.41-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 6.7.2+ds1-1 install ok installed openssl openssl 3.5.0-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed python3 python3 3.13.3-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-bcrypt python3-bcrypt 4.2.0-2.1+b1 install ok installed python3-bibtexparser python3-bibtexparser 2.0.0b5+really1.4.3-1 install ok installed python3-biom-format python3-biom-format 2.1.16-1+b5 install ok installed python3-blinker python3-blinker 1.9.0-1 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.17.1-2+b2 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.1-1+b1 install ok installed python3-click python3-click 8.2.0+0.really.8.1.8-1 install ok installed python3-cryptography python3-cryptography 43.0.0-2 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-decorator python3-decorator 5.2.1-1 install ok installed python3-dill python3-dill 0.3.9-1 install ok installed python3-filelock python3-filelock 3.18.0-1 install ok installed python3-flask python3-flask 3.1.0-2 install ok installed python3-flask-sqlalchemy python3-flask-sqlalchemy 3.1.1-4 install ok installed python3-flufl.lock python3-flufl.lock 8.1.0-2 install ok installed python3-globus-sdk python3-globus-sdk 3.54.0-1 install ok installed python3-greenlet python3-greenlet 3.1.0-1+b2 install ok installed python3-h5py python3-h5py 3.13.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.13.0-1+b1 install ok installed python3-hdmedians python3-hdmedians 0.14.2-6+b1 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-ijson python3-ijson 3.3.0-1+b2 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-itsdangerous python3-itsdangerous 2.2.0-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-1 install ok installed python3-jwt python3-jwt 2.10.1-2 install ok installed python3-lxml:amd64 python3-lxml 5.3.2-1 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b3 install ok installed python3-minimal python3-minimal 3.13.3-1 install ok installed python3-more-itertools python3-more-itertools 10.6.0-1 install ok installed python3-natsort python3-natsort 8.0.2-2 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1 install ok installed python3-packaging python3-packaging 24.2-1 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-9 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-9 install ok installed python3-parsl python3-parsl 2025.01.13+ds-1 install ok installed python3-patsy python3-patsy 1.0.1-1 install ok installed python3-pkg-resources python3-pkg-resources 75.8.0-1 install ok installed python3-platformdirs python3-platformdirs 4.3.7-1 install ok installed python3-psutil python3-psutil 7.0.0-1 install ok installed python3-public python3-public 4.1.0-2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pytz python3-pytz 2025.2-1 install ok installed python3-requests python3-requests 2.32.3+dfsg-5 install ok installed python3-scipy python3-scipy 1.15.2-7 install ok installed python3-setproctitle:amd64 python3-setproctitle 1.3.5-1 install ok installed python3-setuptools python3-setuptools 75.8.0-1 install ok installed python3-skbio python3-skbio 0.6.2-4+b2 install ok installed python3-sqlalchemy python3-sqlalchemy 2.0.40+ds1-1 install ok installed python3-statsmodels python3-statsmodels 0.14.4+dfsg-1 install ok installed python3-statsmodels-lib:amd64 python3-statsmodels-lib 0.14.4+dfsg-1+b4 install ok installed python3-tblib python3-tblib 3.1.0-1 install ok installed python3-tomlkit python3-tomlkit 0.13.2-1 install ok installed python3-typeguard python3-typeguard 4.4.2-1 install ok installed python3-typing-extensions python3-typing-extensions 4.13.1-1 install ok installed python3-tzlocal python3-tzlocal 5.3.1-1 install ok installed python3-urllib3 python3-urllib3 2.3.0-2 install ok installed python3-werkzeug python3-werkzeug 3.1.3-2 install ok installed python3-yaml python3-yaml 6.0.2-1+b2 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3-zmq python3-zmq 26.2.1-1+b1 install ok installed python3.13 python3.13 3.13.3-1 install ok installed python3.13-minimal python3.13-minimal 3.13.3-1 install ok installed q2-dada2 q2-dada2 2024.5.0-1 install ok installed q2-types q2-types 2024.5.0-1 install ok installed qiime qiime 2024.5.0-1 install ok installed r-base-core r-base-core 4.4.3-1+b1 install ok installed r-bioc-biobase r-bioc-biobase 2.66.0-2 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.40.0-2 install ok installed r-bioc-biostrings r-bioc-biostrings 2.74.1+dfsg-2 install ok installed r-bioc-dada2 r-bioc-dada2 1.34.0+dfsg-2 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.32.0+dfsg-2 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.42.3+dfsg-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.13-2 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.42.0-2 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.58.0+dfsg-2 install ok installed r-bioc-iranges r-bioc-iranges 2.40.1-2 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.18.1-1 install ok installed r-bioc-pwalign r-bioc-pwalign 1.2.0-2 install ok installed r-bioc-rhtslib r-bioc-rhtslib 3.2.0+dfsg-2 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.22.0+dfsg-2 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.6.0+dfsg-2 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-2 install ok installed r-bioc-shortread r-bioc-shortread 1.64.0-3 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.6.2+dfsg-2 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.36.0+dfsg-2 install ok installed r-bioc-ucsc.utils r-bioc-ucsc.utils 1.2.0+ds-2 install ok installed r-bioc-xvector r-bioc-xvector 0.46.0-2 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.52.0+dfsg-2 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-1 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bitops r-cran-bitops 1.0-9-1 install ok installed r-cran-cli r-cran-cli 3.6.4-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-1+dfsg-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.2-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-1 install ok installed r-cran-curl r-cran-curl 6.2.1+dfsg-1 install ok installed r-cran-deldir r-cran-deldir 2.0-4-1 install ok installed r-cran-fansi r-cran-fansi 1.0.6-1 install ok installed r-cran-farver r-cran-farver 2.1.2-1 install ok installed r-cran-formatr r-cran-formatr 1.14-2 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-getopt r-cran-getopt 1.20.4-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.5.1+dfsg-1 install ok installed r-cran-glue r-cran-glue 1.8.0-1 install ok installed r-cran-gtable r-cran-gtable 0.3.6+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.7+dfsg-1 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2.1-1 install ok installed r-cran-interp r-cran-interp 1.1-6-1 install ok installed r-cran-isoband r-cran-isoband 0.2.7-1 install ok installed r-cran-jpeg r-cran-jpeg 0.1-10-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.9.1+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.3-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-lattice r-cran-lattice 0.22-7-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-30-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.21-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-65-1 install ok installed r-cran-matrix r-cran-matrix 1.7-3-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-1 install ok installed r-cran-mgcv r-cran-mgcv 1.9-3-1 install ok installed r-cran-mime r-cran-mime 0.12-2 install ok installed r-cran-munsell r-cran-munsell 0.5.1-1 install ok installed r-cran-nlme r-cran-nlme 3.1.168-1 install ok installed r-cran-openssl r-cran-openssl 2.3.2+dfsg-1 install ok installed r-cran-optparse r-cran-optparse 1.7.5-1 install ok installed r-cran-pillar r-cran-pillar 1.10.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-plyr r-cran-plyr 1.8.9-1 install ok installed r-cran-png r-cran-png 0.1-8-1+b1 install ok installed r-cran-r6 r-cran-r6 2.6.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.14-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.4.0.2-1 install ok installed r-cran-rcppparallel r-cran-rcppparallel 5.1.7+dfsg-6 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 1.1.5-1 install ok installed r-cran-scales r-cran-scales 1.3.0-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-stringi r-cran-stringi 1.8.4-1+b1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-sys r-cran-sys 3.4.3-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-3 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2 install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-1 install ok installed ucf ucf 3.0051 install ok installed unzip unzip 6.0-29 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-3 install ok installed x11-common x11-common 1:7.7+24 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-14 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'javascript-common', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-pwalign', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 1m7.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono javascript-common libaec0 libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgcrypt20 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libhwloc15 libice6 libicu76 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 liblzf1 libnghttp2-14 libnghttp3-9 libnorm1t64 libopenblas0 libopenblas0-pthread libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpgm-5.3-0t64 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsodium23 libssh2-1t64 libssw0 libstdc++-14-dev libsz2 libtasn1-6 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6t64 libyajl2 libyaml-0-2 libzmq5 linux-libc-dev littler media-types netbase node-fortawesome-fontawesome-free openssl python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-natsort python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-parsl python3-patsy python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-scipy python3-setproctitle python3-setuptools python3-skbio python3-sqlalchemy python3-statsmodels python3-statsmodels-lib python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bitops r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-deldir r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 297 to remove and 0 not upgraded. After this operation, 1074 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57589 files and directories currently installed.) Removing q2-dada2 (2024.5.0-1) ... Removing q2-types (2024.5.0-1) ... Removing python3-skbio (0.6.2-4+b2) ... Removing qiime (2024.5.0-1) ... Removing python3-parsl (2025.01.13+ds-1) ... Removing r-bioc-dada2 (1.34.0+dfsg-2) ... Removing r-bioc-shortread (1.64.0-3) ... Removing r-cran-latticeextra (0.6-30-1) ... Removing r-cran-interp (1.1-6-1) ... Removing r-cran-rcppeigen (0.3.4.0.2-1) ... Removing r-bioc-genomicalignments (1.42.0-2) ... Removing r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... Removing r-bioc-delayedarray (0.32.0+dfsg-2) ... Removing r-bioc-sparsearray (1.6.2+dfsg-2) ... Removing r-bioc-s4arrays (1.6.0+dfsg-2) ... Removing r-cran-abind (1.4-8-1) ... Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (12) ... Removing python3-biom-format (2.1.16-1+b5) ... Removing python3-h5py (3.13.0-1) ... Removing python3-h5py-serial (3.13.0-1+b1) ... Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing r-bioc-rsamtools (2.22.0+dfsg-2) ... Removing r-bioc-biocparallel (1.40.0-2) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-4.2) ... Removing libstdc++-14-dev:amd64 (14.2.0-19) ... Removing libgcc-14-dev:amd64 (14.2.0-19) ... Removing libasan8:amd64 (14.2.0-19) ... Removing python3-statsmodels (0.14.4+dfsg-1) ... Removing python3-scipy (1.15.2-7) ... Removing python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b4) ... Removing python3-hdmedians (0.14.2-6+b1) ... Removing python3-pandas (2.2.3+dfsg-9) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... Removing r-cran-ggplot2 (3.5.1+dfsg-1) ... Removing r-cran-mgcv (1.9-3-1) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libblas3:amd64 (3.12.1-2) ... Removing r-bioc-genomicranges (1.58.0+dfsg-2) ... Removing r-bioc-pwalign (1.2.0-2) ... Removing r-bioc-biostrings (2.74.1+dfsg-2) ... Removing r-bioc-xvector (0.46.0-2) ... Removing r-bioc-rhtslib (3.2.0+dfsg-2) ... Removing r-bioc-zlibbioc (1.52.0+dfsg-2) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libc6-dev:amd64 (2.41-6) ... Removing libc-dev-bin (2.41-6) ... Removing python3-zmq (26.2.1-1+b1) ... Removing libzmq5:amd64 (4.3.5-1+b3) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing python3-yaml (6.0.2-1+b2) ... Removing python3-flask-sqlalchemy (3.1.1-4) ... Removing python3-sqlalchemy (2.0.40+ds1-1) ... Removing python3-networkx (3.2.1-5) ... Removing python3-setuptools (75.8.0-1) ... Removing python3-jaraco.text (4.0.0-1) ... Removing python3-setproctitle:amd64 (1.3.5-1) ... Removing python3-zipp (3.21.0-1) ... Removing python3-globus-sdk (3.54.0-1) ... Removing python3-cryptography (43.0.0-2) ... Removing python3-cffi-backend:amd64 (1.17.1-2+b2) ... Removing python3-lxml:amd64 (5.3.2-1) ... Removing libxslt1.1:amd64 (1.1.35-1.2) ... Removing libgcrypt20:amd64 (1.11.0-7) ... Removing libopenblas0:amd64 (0.3.29+ds-3) ... Removing libgpg-error0:amd64 (1.51-4) ... Removing libhwasan0:amd64 (14.2.0-19) ... Removing r-cran-rcppparallel (5.1.7+dfsg-6) ... Removing libtbb-dev:amd64 (2022.1.0-1) ... Removing libtbb12:amd64 (2022.1.0-1) ... Removing libtbbbind-2-5:amd64 (2022.1.0-1) ... Removing libhwloc15:amd64 (2.12.0-1) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-stringr (1.5.1-1) ... Removing r-cran-stringi (1.8.4-1+b1) ... Removing libitm1:amd64 (14.2.0-19) ... Removing r-cran-jpeg (0.1-10-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing liblsan0:amd64 (14.2.0-19) ... Removing liblzf1:amd64 (3.6-4+b3) ... Removing libnorm1t64:amd64 (1.5.9+dfsg-3.1+b2) ... Removing libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1+b1) ... Removing r-cran-png (0.1-8-1+b1) ... Removing libquadmath0:amd64 (14.2.0-19) ... Removing libsodium23:amd64 (1.0.18-1+b2) ... Removing libssw0:amd64 (1.1-15+b2) ... Removing libtbbmalloc2:amd64 (2022.1.0-1) ... Removing libtsan2:amd64 (14.2.0-19) ... Removing libubsan1:amd64 (14.2.0-19) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Removing python3-ijson (3.3.0-1+b2) ... Removing libyajl2:amd64 (2.1.0-5+b2) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing linux-libc-dev (6.12.21-1) ... Removing r-cran-plyr (1.8.9-1) ... Removing r-cran-rcpp (1.0.14-1) ... Removing littler (0.3.21-1) ... Removing node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... Removing python3-bcrypt (4.2.0-2.1+b1) ... Removing python3-bibtexparser (2.0.0b5+really1.4.3-1) ... Removing python3-flask (3.1.0-2) ... Removing python3-blinker (1.9.0-1) ... Removing python3-click (8.2.0+0.really.8.1.8-1) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-decorator (5.2.1-1) ... Removing python3-dill (0.3.9-1) ... Removing python3-filelock (3.18.0-1) ... Removing python3-flufl.lock (8.1.0-2) ... Removing python3-greenlet (3.1.0-1+b2) ... Removing python3-itsdangerous (2.2.0-2) ... Removing python3-jinja2 (3.1.6-1) ... Removing python3-jwt (2.10.1-2) ... Removing python3-werkzeug (3.1.3-2) ... Removing python3-markupsafe (2.1.5-1+b3) ... Removing python3-natsort (8.0.2-2) ... Removing python3-packaging (24.2-1) ... Removing python3-patsy (1.0.1-1) ... Removing python3-platformdirs (4.3.7-1) ... Removing python3-psutil (7.0.0-1) ... Removing python3-public (4.1.0-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-pytz (2025.2-1) ... Removing python3-tblib (3.1.0-1) ... Removing python3-tomlkit (0.13.2-1) ... Removing python3-tzlocal (5.3.1-1) ... Removing r-bioc-biobase (2.66.0-2) ... Removing r-bioc-matrixgenerics (1.18.1-1) ... Removing r-cran-bitops (1.0-9-1) ... Removing r-cran-tibble (3.2.1+dfsg-3) ... Removing r-cran-pillar (1.10.1+dfsg-1) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-scales (1.3.0-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-munsell (0.5.1-1) ... Removing r-cran-colorspace (2.1-1+dfsg-1) ... Removing r-cran-cpp11 (0.5.2-1) ... Removing r-cran-crayon (1.5.3-1) ... Removing r-cran-deldir (2.0-4-1) ... Removing r-cran-fansi (1.0.6-1) ... Removing r-cran-farver (2.1.2-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-2) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-optparse (1.7.5-1) ... Removing r-cran-getopt (1.20.4-1) ... Removing r-cran-gtable (0.3.6+dfsg-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.8.0-1) ... Removing r-cran-hwriter (1.3.2.1-1) ... Removing r-cran-isoband (0.2.7-1) ... Removing r-cran-labeling (0.4.3-1) ... Removing r-cran-nlme (3.1.168-1) ... Removing r-cran-littler (0.3.21-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-65-1) ... Removing r-cran-matrixstats (1.5.0-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-cran-rlang (1.1.5-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-viridislite (0.4.2-2) ... Removing r-cran-withr (3.0.2+dfsg-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing python3-requests (2.32.3+dfsg-5) ... Removing r-cran-matrix (1.7-3-1) ... Removing python3-numpy (1:2.2.4+ds-1) ... Removing r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Removing r-bioc-ucsc.utils (1.2.0+ds-2) ... Removing r-cran-httr (1.4.7+dfsg-1) ... Removing r-cran-curl (6.2.1+dfsg-1) ... Removing python3-pkg-resources (75.8.0-1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.2-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.1-1+b1) ... Removing python3-idna (3.10-1) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.6.0-1) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Removing python3-typing-extensions (4.13.1-1) ... Removing python3-urllib3 (2.3.0-2) ... Removing r-bioc-iranges (2.40.1-2) ... Removing r-bioc-s4vectors (0.44.0+dfsg-2) ... Removing r-bioc-biocgenerics (0.52.0-2) ... Removing r-bioc-genomeinfodbdata (1.2.13-2) ... Removing r-cran-openssl (2.3.2+dfsg-1) ... Removing r-cran-askpass (1.2.1-1) ... Removing r-cran-cli (3.6.4-1) ... Removing r-cran-jsonlite (1.9.1+dfsg-1) ... Removing r-cran-lattice (0.22-7-1) ... Removing r-cran-mime (0.12-2) ... Removing r-cran-r6 (2.6.1-1) ... Removing r-cran-sys (3.4.3-1) ... Removing r-base-core (4.4.3-1+b1) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.56.3-1) ... Removing libpangoft2-1.0-0:amd64 (1.56.3-1) ... Removing libpango-1.0-0:amd64 (1.56.3-1) ... Removing fontconfig (2.15.0-2.3) ... Removing libtk8.6:amd64 (8.6.16-1) ... Removing libxft2:amd64 (2.3.6-1+b4) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-2.3) ... Removing fontconfig-config (2.15.0-2.3) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ... Removing libglib2.0-0t64:amd64 (2.84.1-1) ... Removing libatomic1:amd64 (14.2.0-19) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libcurl4t64:amd64 (8.13.0-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-1+b1) ... Removing libthai0:amd64 (0.1.29-2+b1) ... Removing libdatrie1:amd64 (0.2.13-3+b1) ... Removing libtiff6:amd64 (4.7.0-3) ... Removing libdeflate0:amd64 (1.23-1+b1) ... Removing python3 (3.13.3-1) ... Removing python3-minimal (3.13.3-1) ... Removing python3.13 (3.13.3-1) ... Removing python3.13-minimal (3.13.3-1) ... Removing libexpat1:amd64 (2.7.1-1) ... Removing libpython3-stdlib:amd64 (3.13.3-1) ... Removing libpython3.13-stdlib:amd64 (3.13.3-1) ... find: '/usr/lib/python3': No such file or directory Removing libfribidi0:amd64 (1.0.16-1) ... Removing libopenblas0-pthread:amd64 (0.3.29+ds-3) ... Removing libgfortran5:amd64 (14.2.0-19) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Removing libsm6:amd64 (2:1.2.6-1) ... Removing libice6:amd64 (2:1.1.1-1) ... Removing libicu76:amd64 (76.1-3) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-5) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libldap2:amd64 (2.6.9+dfsg-2) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libpaper-utils (2.2.5-0.3+b2) ... Removing libpaper2:amd64 (2.2.5-0.3+b2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing libpng16-16t64:amd64 (1.6.47-1.1) ... Removing libpython3.13-minimal:amd64 (3.13.3-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libunistring5:amd64 (1.3-2) ... Removing libxss1:amd64 (1:1.2.3-1+b3) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing openssl (3.5.0-1) ... Removing readline-common (8.2-6) ... Removing unzip (6.0-29) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-14) ... Removing libffi8:amd64 (3.4.7-1) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Processing triggers for libc-bin (2.41-6) ... 1m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'javascript-common', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-pwalign', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 1m7.2s INFO: Running scripts post_remove 1m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_remove_cleanup'] 1m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_remove_cleanup'] 1m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_remove_exceptions'] 1m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_remove_exceptions'] 1m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'javascript-common', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-pwalign', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 1m7.5s DUMP: (Reading database ... 5532 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.15.0-2.3) ... Purging configuration files for fontconfig-config (2.15.0-2.3) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for javascript-common (12) ... dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgcrypt20 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.1-1) ... dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu76 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-bootstrap4 (4.6.1+dfsg1-4) ... Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Purging configuration files for libjs-popper.js (1.16.1+ds-6) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libnorm1t64 which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b2) ... dpkg: warning: ignoring request to remove libpgm-5.3-0t64 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.3-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtbb-dev which isn't installed dpkg: warning: ignoring request to remove libtbb12 which isn't installed dpkg: warning: ignoring request to remove libtbbbind-2-5 which isn't installed dpkg: warning: ignoring request to remove libtbbmalloc2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.6+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed dpkg: warning: ignoring request to remove libyajl2 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libzmq5 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for media-types (13.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove node-fortawesome-fontawesome-free which isn't installed Purging configuration files for openssl (3.5.0-1) ... Purging configuration files for python3 (3.13.3-1) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-bibtexparser which isn't installed dpkg: warning: ignoring request to remove python3-biom-format which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dill which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-flask which isn't installed dpkg: warning: ignoring request to remove python3-flask-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-flufl.lock which isn't installed dpkg: warning: ignoring request to remove python3-globus-sdk which isn't installed dpkg: warning: ignoring request to remove python3-greenlet which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-hdmedians which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-ijson which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-itsdangerous which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.text which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-natsort which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parsl which isn't installed dpkg: warning: ignoring request to remove python3-patsy which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-public which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setproctitle which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-skbio which isn't installed dpkg: warning: ignoring request to remove python3-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-statsmodels which isn't installed dpkg: warning: ignoring request to remove python3-statsmodels-lib which isn't installed dpkg: warning: ignoring request to remove python3-tblib which isn't installed dpkg: warning: ignoring request to remove python3-tomlkit which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tzlocal which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-werkzeug which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zmq which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.3-1) ... dpkg: warning: ignoring request to remove q2-types which isn't installed dpkg: warning: ignoring request to remove qiime which isn't installed Purging configuration files for r-base-core (4.4.3-1+b1) ... dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-dada2 which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-pwalign which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-shortread which isn't installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-ucsc.utils which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-deldir which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-getopt which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-interp which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-jpeg which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-optparse which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppparallel which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove unzip which isn't installed Purging configuration files for x11-common (1:7.7+24) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'javascript-common', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-hl-310:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnorm1t64:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-patsy', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-skbio', 'python3-sqlalchemy', 'python3-statsmodels', 'python3-statsmodels-lib:amd64', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-pwalign', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 1m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', 'q2-dada2'] 1m7.5s DUMP: dpkg: warning: ignoring request to remove q2-dada2 which isn't installed 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', 'q2-dada2'] 1m7.5s INFO: Running scripts post_purge 1m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_purge_exceptions'] 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_purge_exceptions'] 1m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_purge_manual_cleanup'] 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_purge_manual_cleanup'] 1m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', '--pending'] 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--purge', '--pending'] 1m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--remove', '--pending'] 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg', '--remove', '--pending'] 1m7.5s INFO: Running scripts post_test 1m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_test_exceptions'] 1m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'tmp/scripts/post_test_exceptions'] 1m7.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 1m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 1m8.0s DEBUG: No broken symlinks as far as we can find. 1m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-divert', '--list'] 1m8.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'dpkg-divert', '--list'] 1m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'clean'] 1m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o', 'apt-get', 'clean'] 1m8.0s DEBUG: Recording chroot state 1m9.5s INFO: PASS: Installation and purging test. 1m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/shm'] 1m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/shm'] 1m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/console'] 1m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/console'] 1m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/ptmx'] 1m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/ptmx'] 1m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/pts'] 1m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/dev/pts'] 1m9.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/proc'] 1m9.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o/proc'] 1m9.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 1m9.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpdng0b6_o'] 1m9.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpdng0b6_o 1m9.8s INFO: PASS: All tests. 1m9.8s INFO: piuparts run ends. ret=0 End: 2025-04-09 19:04:13 GMT