Start: 2025-03-17 07:45:05 GMT Package: qiime Version: 2024.5.0-1 Installed-Size: 2237 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-platformdirs, python3-bibtexparser, python3-decorator, python3-dill, python3-lxml, python3-pandas, python3-parsl, python3-tomlkit, python3-tzlocal, python3-yaml, python3-pyparsing, python3-dateutil, python3-networkx, python3-psutil, python3-flufl.lock, python3-setuptools Recommends: q2cli, q2templates, q2-cutadapt, q2-types, q2-metadata, q2-demux, q2-quality-filter, q2-feature-classifier, q2-feature-table Description: Quantitative Insights Into Microbial Ecology Homepage: https://qiime2.org Description-md5: 424f7ee49432e486e12845f0931cf9ac Tag: role::program Section: science Priority: optional Filename: pool/main/q/qiime/qiime_2024.5.0-1_all.deb Size: 304036 MD5sum: becc7751d589a0dc283025f165590bb8 SHA256: f97ff81f9cb88a7b1aad5c7f25576b7d910c885c78431102b0a71d297539a974 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt qiime=2024.5.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt qiime=2024.5.0-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2e2bpgf6 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2e2bpgf6 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2e2bpgf6/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp2e2bpgf6/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7383 kB] Fetched 17.7 MB in 2s (7925 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-yf', 'dist-upgrade'] 0m5.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libselinux1 libsemanage-common libsemanage2 libsepol2 login.defs passwd 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1898 kB of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.17.3-2 [186 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:4 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.17.3-2 [1228 kB] Fetched 1898 kB in 0s (33.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) over (3.8-4) ... Setting up libselinux1:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.3-2_all.deb ... Unpacking login.defs (1:4.17.3-2) over (1:4.17.3-1) ... Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... Unpacking libsemanage-common (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsemanage2_3.8.1-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8.1-1) over (3.8-1+b1) ... Preparing to unpack .../passwd_1%3a4.17.3-2_amd64.deb ... Unpacking passwd (1:4.17.3-2) over (1:4.17.3-1) ... Setting up login.defs (1:4.17.3-2) ... Setting up libsemanage-common (3.8.1-1) ... Setting up libsepol2:amd64 (3.8.1-1) ... Setting up libsemanage2:amd64 (3.8.1-1) ... Setting up passwd (1:4.17.3-2) ... Processing triggers for libc-bin (2.41-6) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-yf', 'dist-upgrade'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s DUMP: 7334a8db44da60fffcf592d163968990 - 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s INFO: Running scripts post_setup 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_fake-essential'] 0m8.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.68). The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1757 kB of archives. After this operation, 4946 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0050 [42.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] Preconfiguring packages ... Fetched 1757 kB in 0s (27.5 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4907 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0050_all.deb ... Moving old data out of the way Unpacking ucf (3.0050) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.24) ... Setting up procps (2:4.0.4-7) ... Setting up ucf (3.0050) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-6) ... 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_fake-essential'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'clean'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'clean'] 0m8.3s DEBUG: Recording chroot state 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-divert', '--list'] 0m8.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-divert', '--list'] 0m8.9s INFO: Running scripts is_testable 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/is_testable_uninstallable'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/is_testable_uninstallable'] 0m8.9s INFO: apt-cache does not know about any of the requested packages 0m8.9s INFO: Running scripts pre_test 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_test_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_test_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_test_root_password'] 0m8.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_test_root_password'] 0m8.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 0m9.6s DEBUG: No broken symlinks as far as we can find. 0m9.6s INFO: Running scripts pre_install 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_database-server'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_exceptions'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'show', '--no-all-versions', 'qiime=2024.5.0-1'] 0m10.7s DUMP: Package: qiime Version: 2024.5.0-1 Installed-Size: 2237 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-platformdirs, python3-bibtexparser, python3-decorator, python3-dill, python3-lxml, python3-pandas, python3-parsl, python3-tomlkit, python3-tzlocal, python3-yaml, python3-pyparsing, python3-dateutil, python3-networkx, python3-psutil, python3-flufl.lock, python3-setuptools Recommends: q2cli, q2templates, q2-cutadapt, q2-types, q2-metadata, q2-demux, q2-quality-filter, q2-feature-classifier, q2-feature-table Description-en: Quantitative Insights Into Microbial Ecology Microbes are surrounding us, animals, plants and all their parasites with strong effect on these and the environment these live in. Soil quality comes to mind but also the effect that bacteria have on each other. Humans are influencing the absolute and relative abundance of bacteria by antibiotics, food, fertilizers - you name it - and these changes affect us. . QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. Description-md5: 424f7ee49432e486e12845f0931cf9ac Homepage: https://qiime2.org Tag: role::program Section: science Priority: optional Filename: pool/main/q/qiime/qiime_2024.5.0-1_all.deb Size: 304036 MD5sum: becc7751d589a0dc283025f165590bb8 SHA256: f97ff81f9cb88a7b1aad5c7f25576b7d910c885c78431102b0a71d297539a974 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'show', '--no-all-versions', 'qiime=2024.5.0-1'] 0m10.7s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: python3:any, python3-platformdirs, python3-bibtexparser, python3-decorator, python3-dill, python3-lxml, python3-pandas, python3-parsl, python3-tomlkit, python3-tzlocal, python3-yaml, python3-pyparsing, python3-dateutil, python3-networkx, python3-psutil, python3-flufl.lock, python3-setuptools Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m10.7s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp5hqmnj_w/piuparts-depends-dummy'] 0m10.7s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp5hqmnj_w/piuparts-depends-dummy.deb'. 0m10.7s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp5hqmnj_w/piuparts-depends-dummy'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.7s DUMP: 2.9.33 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.7s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp5hqmnj_w/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp2e2bpgf6/tmp 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m39.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates javascript-common libblas3 libcom-err2 libexpat1 libffi8 libgcrypt20 libgfortran5 libgpg-error0 libgssapi-krb5-2 libicu76 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libnorm1t64 libpgm-5.3-0t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsodium23 libsqlite3-0 libxml2 libxslt1.1 libyaml-0-2 libzmq5 media-types netbase node-fortawesome-fontawesome-free openssl python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-idna python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-parsl python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-setproctitle python3-setuptools python3-sqlalchemy python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal readline-common Suggested packages: apache2 | lighttpd | httpd rng-tools krb5-doc krb5-user python3-doc python3-tk python3-venv python-blinker-doc python-charset-normalizer-doc python-cryptography-doc python3-cryptography-vectors python3-objgraph python-flask-doc python-flufl.lock-doc python-greenlet-dev python-greenlet-doc python-jinja2-doc python-jwt-doc python3-crypto python-lxml-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python-public-doc python-pyparsing-doc python3-openssl python3-socks python-requests-doc python-setuptools-doc python-sqlalchemy-doc python3-asyncpg python3-pg8000 python3-psycopg2 python3-psycopg2cffi python3-aiosqlite python3-mariadb-connector python3-mysqldb python3-mysql.connector python3-pyodbc python3-pymssql python3-cx-oracle python3-oracledb python3-brotli ipython3 python-werkzeug-doc python3-watchdog python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: libgpg-error-l10n node-jquery krb5-locales python3-asgiref python3-dotenv python3-babel python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-scipy python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba r-cran-plotly python3-sqlalchemy-ext python3-openssl python3-pyinotify The following NEW packages will be installed: ca-certificates javascript-common libblas3 libcom-err2 libexpat1 libffi8 libgcrypt20 libgfortran5 libgpg-error0 libgssapi-krb5-2 libicu76 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libnorm1t64 libpgm-5.3-0t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsodium23 libsqlite3-0 libxml2 libxslt1.1 libyaml-0-2 libzmq5 media-types netbase node-fortawesome-fontawesome-free openssl piuparts-depends-dummy python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-idna python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-parsl python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-setproctitle python3-setuptools python3-sqlalchemy python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal readline-common 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 61.5 MB/61.5 MB of archives. After this operation, 306 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [738 B] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [138 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:19 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5084 kB] Get:21 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:22 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:23 http://deb.debian.org/debian sid/main amd64 javascript-common all 12 [5236 B] Get:24 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.51-3 [82.2 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:30 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-3 [9721 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1+b2 [221 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1+b1 [162 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libsodium23 amd64 1.0.18-1+b2 [165 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.3+b1 [699 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libzmq5 amd64 4.3.5-1+b3 [283 kB] Get:43 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1521 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:45 http://deb.debian.org/debian sid/main amd64 python3-bcrypt amd64 4.2.0-2.1+b1 [211 kB] Get:46 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-bibtexparser all 2.0.0b5+really1.4.3-1 [34.3 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:50 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.17.1-2+b2 [93.6 kB] Get:51 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-cryptography amd64 43.0.0-1 [935 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.3.9-1 [83.5 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.17.0-1 [12.7 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get:60 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.5-2 [107 kB] Get:62 http://deb.debian.org/debian sid/main amd64 python3-werkzeug all 3.1.3-2 [207 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-flask all 3.1.0-2 [106 kB] Get:64 http://deb.debian.org/debian sid/main amd64 python3-greenlet amd64 3.1.0-1+b2 [165 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-sqlalchemy all 2.0.32+ds1-1 [1196 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-flask-sqlalchemy all 3.1.1-3 [36.0 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.0.0-1 [220 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-public all 4.1.0-2 [7032 B] Get:70 http://deb.debian.org/debian sid/main amd64 python3-flufl.lock all 8.1.0-2 [15.6 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-jwt all 2.10.1-2 [31.3 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.3.0-2 [114 kB] Get:74 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-globus-sdk all 3.51.0-1 [301 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:78 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get:85 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.3.1-1+b1 [1288 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.2.1-5 [13.0 MB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.1-3 [150 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-tz all 2025.1-3 [4004 B] Get:89 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8+b1 [4517 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-setproctitle amd64 1.3.5-1 [18.4 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-tblib all 3.0.0-6 [13.8 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-zmq amd64 26.2.1-1+b1 [182 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-parsl all 2025.01.13+ds-1 [276 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.13.2-1 [42.7 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-tzlocal all 5.3.1-1 [24.2 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.46.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-2) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. 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Unpacking python3-idna (3.10-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../58-python3-urllib3_2.3.0-2_all.deb ... Unpacking python3-urllib3 (2.3.0-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../59-python3-requests_2.32.3+dfsg-4_all.deb ... Unpacking python3-requests (2.32.3+dfsg-4) ... Selecting previously unselected package python3-globus-sdk. Preparing to unpack .../60-python3-globus-sdk_3.51.0-1_all.deb ... Unpacking python3-globus-sdk (3.51.0-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../61-python3-more-itertools_10.6.0-1_all.deb ... Unpacking python3-more-itertools (10.6.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../62-python3-typeguard_4.4.2-1_all.deb ... Unpacking python3-typeguard (4.4.2-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../63-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../64-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../65-python3-pkg-resources_75.8.0-1_all.deb ... Unpacking python3-pkg-resources (75.8.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../66-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../67-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../68-python3-setuptools_75.8.0-1_all.deb ... Unpacking python3-setuptools (75.8.0-1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../69-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Selecting previously unselected package python3-lxml:amd64. Preparing to unpack .../70-python3-lxml_5.3.1-1+b1_amd64.deb ... Unpacking python3-lxml:amd64 (5.3.1-1+b1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../71-python3-networkx_3.2.1-5_all.deb ... Unpacking python3-networkx (3.2.1-5) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../72-python3-pytz_2025.1-3_all.deb ... Unpacking python3-pytz (2025.1-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../73-python3-tz_2025.1-3_all.deb ... Unpacking python3-tz (2025.1-3) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../74-python3-pandas-lib_2.2.3+dfsg-8+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../75-python3-pandas_2.2.3+dfsg-8_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-8) ... Selecting previously unselected package python3-setproctitle:amd64. Preparing to unpack .../76-python3-setproctitle_1.3.5-1_amd64.deb ... Unpacking python3-setproctitle:amd64 (1.3.5-1) ... Selecting previously unselected package python3-tblib. Preparing to unpack .../77-python3-tblib_3.0.0-6_all.deb ... Unpacking python3-tblib (3.0.0-6) ... Selecting previously unselected package python3-zmq. Preparing to unpack .../78-python3-zmq_26.2.1-1+b1_amd64.deb ... Unpacking python3-zmq (26.2.1-1+b1) ... Selecting previously unselected package python3-parsl. Preparing to unpack .../79-python3-parsl_2025.01.13+ds-1_all.deb ... Unpacking python3-parsl (2025.01.13+ds-1) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../80-python3-platformdirs_4.3.6-1_all.deb ... Unpacking python3-platformdirs (4.3.6-1) ... Selecting previously unselected package python3-tomlkit. Preparing to unpack .../81-python3-tomlkit_0.13.2-1_all.deb ... Unpacking python3-tomlkit (0.13.2-1) ... Selecting previously unselected package python3-tzlocal. Preparing to unpack .../82-python3-tzlocal_5.3.1-1_all.deb ... Unpacking python3-tzlocal (5.3.1-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../83-python3-yaml_6.0.2-1+b2_amd64.deb ... Unpacking python3-yaml (6.0.2-1+b2) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../84-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (13.0.0) ... Setting up javascript-common (12) ... Setting up libnorm1t64:amd64 (1.5.9+dfsg-3.1+b2) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libsodium23:amd64 (1.0.18-1+b2) ... Setting up libgpg-error0:amd64 (1.51-3) ... Setting up libjs-popper.js (1.16.1+ds-6) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libsqlite3-0:amd64 (3.46.1-2) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1+b1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up netbase (6.5) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up libicu76:amd64 (76.1-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... Setting up libpython3-stdlib:amd64 (3.13.2-2) ... Setting up libzmq5:amd64 (4.3.5-1+b3) ... Setting up python3.13 (3.13.2-2) ... Setting up python3 (3.13.2-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-psutil (7.0.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-dill (0.3.9-1) ... Setting up python3-greenlet (3.1.0-1+b2) ... Setting up python3-setproctitle:amd64 (1.3.5-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-5) ... Setting up python3-urllib3 (2.3.0-2) ... Setting up python3-lxml:amd64 (5.3.1-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.3-1) ... Setting up python3-tzlocal (5.3.1-1) ... Setting up python3-tomlkit (0.13.2-1) ... Setting up python3-cffi-backend:amd64 (1.17.1-2+b2) ... Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-filelock (3.17.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-tblib (3.0.0-6) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-jwt (2.10.1-2) ... Setting up python3-public (4.1.0-2) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-sqlalchemy (2.0.32+ds1-1) ... Setting up python3-flufl.lock (8.1.0-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-zmq (26.2.1-1+b1) ... Setting up python3-cryptography (43.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-globus-sdk (3.51.0-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-flask-sqlalchemy (3.1.1-3) ... Setting up python3-parsl (2025.01.13+ds-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m39.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m39.2s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m39.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp2e2bpgf6/./tmp/piuparts-depends-dummy.deb 0m39.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m39.2s DUMP: piuparts-depends-dummy install ok installed 0m39.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m39.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m39.3s DUMP: (Reading database ... 19275 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'clean'] 0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'clean'] 0m39.3s DEBUG: Recording chroot state 0m40.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 0m41.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 0m43.6s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy'] 0m44.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy', 'qiime'] 0m44.5s DUMP: qiime: Installed: (none) Candidate: 2024.5.0-1 Version table: 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy', 'qiime'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', 'install', 'qiime=2024.5.0-1'] 0m46.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: q2cli q2templates q2-cutadapt q2-types q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table The following NEW packages will be installed: qiime 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 304 kB of archives. After this operation, 2291 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 qiime all 2024.5.0-1 [304 kB] Fetched 304 kB in 0s (3433 kB/s) Selecting previously unselected package qiime. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19275 files and directories currently installed.) Preparing to unpack .../qiime_2024.5.0-1_all.deb ... Unpacking qiime (2024.5.0-1) ... Setting up qiime (2024.5.0-1) ... 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', 'install', 'qiime=2024.5.0-1'] 0m46.3s INFO: Running scripts post_install 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_install_exceptions'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_install_exceptions'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'systemd-tmpfiles', '--cat-config'] 0m46.4s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m46.4s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'systemd-tmpfiles', '--cat-config'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'remove', 'qiime'] 0m47.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: javascript-common libblas3 libcom-err2 libexpat1 libffi8 libgfortran5 libgssapi-krb5-2 libicu76 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libnorm1t64 libpgm-5.3-0t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsodium23 libsqlite3-0 libxml2 libxslt1.1 libyaml-0-2 libzmq5 media-types netbase node-fortawesome-fontawesome-free python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-idna python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-parsl python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-setproctitle python3-setuptools python3-sqlalchemy python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal readline-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: qiime 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 2291 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19743 files and directories currently installed.) Removing qiime (2024.5.0-1) ... 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'remove', 'qiime'] 0m47.6s INFO: Reinstalling after remove 0m47.6s INFO: Running scripts pre_install 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_database-server'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_database-server'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_exceptions'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_extras'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_extras'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy'] 0m47.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy', 'qiime'] 0m47.7s DUMP: qiime: Installed: (none) Candidate: 2024.5.0-1 Version table: 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy', 'qiime'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', 'install', 'qiime=2024.5.0-1'] 0m49.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: q2cli q2templates q2-cutadapt q2-types q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table The following NEW packages will be installed: qiime 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/304 kB of archives. After this operation, 2291 kB of additional disk space will be used. Selecting previously unselected package qiime. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19275 files and directories currently installed.) Preparing to unpack .../qiime_2024.5.0-1_all.deb ... Unpacking qiime (2024.5.0-1) ... Setting up qiime (2024.5.0-1) ... 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', 'install', 'qiime=2024.5.0-1'] 0m49.4s INFO: Running scripts post_install 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_install_exceptions'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_install_exceptions'] 0m49.4s INFO: Running scripts pre_install 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_database-server'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_database-server'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_exceptions'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_exceptions'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_extras'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_extras'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy'] 0m49.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m49.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy'] 0m49.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy', 'qiime'] 0m49.5s DUMP: qiime: Installed: 2024.5.0-1 Candidate: 2024.5.0-1 Version table: *** 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-cache', 'policy', 'qiime'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', 'install', '--reinstall', 'qiime=2024.5.0-1'] 0m51.0s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/304 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19743 files and directories currently installed.) Preparing to unpack .../qiime_2024.5.0-1_all.deb ... Unpacking qiime (2024.5.0-1) over (2024.5.0-1) ... Setting up qiime (2024.5.0-1) ... 0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', '-y', 'install', '--reinstall', 'qiime=2024.5.0-1'] 0m51.0s INFO: Running scripts post_install 0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_install_exceptions'] 0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_install_exceptions'] 0m51.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 0m52.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 0m54.7s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) 0m56.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', '-ac', '--ignore-obsolete'] 0m57.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', '-ac', '--ignore-obsolete'] 0m57.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.0s DUMP: 0.15.6 0m58.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m58.0s INFO: Running adequate version 0.15.6 now. 0m58.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'qiime'] 0m58.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'qiime'] 0m58.0s INFO: Running scripts pre_remove 0m58.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m59.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m59.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m59.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_exceptions'] 0m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_exceptions'] 0m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m59.6s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed javascript-common javascript-common 12 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libexpat1:amd64 libexpat1 2.7.0-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-7 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.51-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libicu76:amd64 libicu76 76.1-3 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-4 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnorm1t64:amd64 libnorm1t64 1.5.9+dfsg-3.1+b2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpgm-5.3-0t64:amd64 libpgm-5.3-0t64 5.3.128~dfsg-2.1+b1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libsodium23:amd64 libsodium23 1.0.18-1+b2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.3+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libzmq5:amd64 libzmq5 4.3.5-1+b3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 6.7.2+ds1-1 install ok installed openssl openssl 3.4.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed python3 python3 3.13.2-2 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-bcrypt python3-bcrypt 4.2.0-2.1+b1 install ok installed python3-bibtexparser python3-bibtexparser 2.0.0b5+really1.4.3-1 install ok installed python3-blinker python3-blinker 1.9.0-1 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.17.1-2+b2 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.1-1+b1 install ok installed python3-click python3-click 8.2.0+0.really.8.1.8-1 install ok installed python3-cryptography python3-cryptography 43.0.0-1 install ok installed python3-dateutil python3-dateutil 2.9.0-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dill python3-dill 0.3.9-1 install ok installed python3-filelock python3-filelock 3.17.0-1 install ok installed python3-flask python3-flask 3.1.0-2 install ok installed python3-flask-sqlalchemy python3-flask-sqlalchemy 3.1.1-3 install ok installed python3-flufl.lock python3-flufl.lock 8.1.0-2 install ok installed python3-globus-sdk python3-globus-sdk 3.51.0-1 install ok installed python3-greenlet python3-greenlet 3.1.0-1+b2 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-inflect python3-inflect 7.3.1-2 install ok installed python3-itsdangerous python3-itsdangerous 2.2.0-2 install ok installed python3-jaraco.context python3-jaraco.context 6.0.1-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.1.0-1 install ok installed python3-jaraco.text python3-jaraco.text 4.0.0-1 install ok installed python3-jinja2 python3-jinja2 3.1.5-2 install ok installed python3-jwt python3-jwt 2.10.1-2 install ok installed python3-lxml:amd64 python3-lxml 5.3.1-1+b1 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b3 install ok installed python3-minimal python3-minimal 3.13.2-2 install ok installed python3-more-itertools python3-more-itertools 10.6.0-1 install ok installed python3-networkx python3-networkx 3.2.1-5 install ok installed python3-numpy python3-numpy 1:2.2.3+ds-5 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.3+ds-5 install ok installed python3-pandas python3-pandas 2.2.3+dfsg-8 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.3+dfsg-8+b1 install ok installed python3-parsl python3-parsl 2025.01.13+ds-1 install ok installed python3-pkg-resources python3-pkg-resources 75.8.0-1 install ok installed python3-platformdirs python3-platformdirs 4.3.6-1 install ok installed python3-psutil python3-psutil 7.0.0-1 install ok installed python3-public python3-public 4.1.0-2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pytz python3-pytz 2025.1-3 install ok installed python3-requests python3-requests 2.32.3+dfsg-4 install ok installed python3-setproctitle:amd64 python3-setproctitle 1.3.5-1 install ok installed python3-setuptools python3-setuptools 75.8.0-1 install ok installed python3-sqlalchemy python3-sqlalchemy 2.0.32+ds1-1 install ok installed python3-tblib python3-tblib 3.0.0-6 install ok installed python3-tomlkit python3-tomlkit 0.13.2-1 install ok installed python3-typeguard python3-typeguard 4.4.2-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tz python3-tz 2025.1-3 install ok installed python3-tzlocal python3-tzlocal 5.3.1-1 install ok installed python3-urllib3 python3-urllib3 2.3.0-2 install ok installed python3-werkzeug python3-werkzeug 3.1.3-2 install ok installed python3-yaml python3-yaml 6.0.2-1+b2 install ok installed python3-zipp python3-zipp 3.21.0-1 install ok installed python3-zmq python3-zmq 26.2.1-1+b1 install ok installed python3.13 python3.13 3.13.2-2 install ok installed python3.13-minimal python3.13-minimal 3.13.2-2 install ok installed qiime qiime 2024.5.0-1 install ok installed readline-common readline-common 8.2-6 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'javascript-common', 'libblas3:amd64', 'libcom-err2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libicu76:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libnorm1t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-idna', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-sqlalchemy', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'readline-common', 'qiime'] 1m5.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates javascript-common libblas3 libcom-err2 libexpat1 libffi8 libgcrypt20 libgfortran5 libgpg-error0 libgssapi-krb5-2 libicu76 libjs-bootstrap4 libjs-jquery libjs-popper.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libnorm1t64 libpgm-5.3-0t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsodium23 libsqlite3-0 libxml2 libxslt1.1 libyaml-0-2 libzmq5 media-types netbase node-fortawesome-fontawesome-free openssl python3 python3-autocommand python3-bcrypt python3-bibtexparser python3-blinker python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-cryptography python3-dateutil python3-decorator python3-dill python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk python3-greenlet python3-idna python3-inflect python3-itsdangerous python3-jaraco.context python3-jaraco.functools python3-jaraco.text python3-jinja2 python3-jwt python3-lxml python3-markupsafe python3-minimal python3-more-itertools python3-networkx python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib python3-parsl python3-pkg-resources python3-platformdirs python3-psutil python3-public python3-pyparsing python3-pytz python3-requests python3-setproctitle python3-setuptools python3-sqlalchemy python3-tblib python3-tomlkit python3-typeguard python3-typing-extensions python3-tz python3-tzlocal python3-urllib3 python3-werkzeug python3-yaml python3-zipp python3-zmq python3.13 python3.13-minimal qiime readline-common 0 upgraded, 0 newly installed, 98 to remove and 0 not upgraded. After this operation, 309 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19743 files and directories currently installed.) Removing qiime (2024.5.0-1) ... Removing python3-parsl (2025.01.13+ds-1) ... Removing python3-globus-sdk (3.51.0-1) ... Removing python3-requests (2.32.3+dfsg-4) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (12) ... Removing python3-pandas (2.2.3+dfsg-8) ... Removing python3-pandas-lib:amd64 (2.2.3+dfsg-8+b1) ... Removing python3-numpy (1:2.2.3+ds-5) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libblas3:amd64 (3.12.1-2) ... Removing python3-zmq (26.2.1-1+b1) ... Removing libzmq5:amd64 (4.3.5-1+b3) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-1+b1) ... Removing python3-yaml (6.0.2-1+b2) ... Removing python3-flask-sqlalchemy (3.1.1-3) ... Removing python3-sqlalchemy (2.0.32+ds1-1) ... Removing python3-networkx (3.2.1-5) ... Removing python3-setuptools (75.8.0-1) ... Removing python3-jaraco.text (4.0.0-1) ... Removing python3-setproctitle:amd64 (1.3.5-1) ... Removing python3-zipp (3.21.0-1) ... Removing python3-cryptography (43.0.0-1) ... Removing python3-cffi-backend:amd64 (1.17.1-2+b2) ... Removing python3-lxml:amd64 (5.3.1-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1.1+b1) ... Removing libgcrypt20:amd64 (1.11.0-7) ... Removing libgfortran5:amd64 (14.2.0-19) ... Removing libgpg-error0:amd64 (1.51-3) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.3+b1) ... Removing libicu76:amd64 (76.1-3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-4) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libnorm1t64:amd64 (1.5.9+dfsg-3.1+b2) ... Removing libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1+b1) ... Removing libsodium23:amd64 (1.0.18-1+b2) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... Removing openssl (3.4.1-1) ... Removing python3-bcrypt (4.2.0-2.1+b1) ... Removing python3-bibtexparser (2.0.0b5+really1.4.3-1) ... Removing python3-flask (3.1.0-2) ... Removing python3-blinker (1.9.0-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.1-1+b1) ... Removing python3-click (8.2.0+0.really.8.1.8-1) ... Removing python3-dateutil (2.9.0-3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-dill (0.3.9-1) ... Removing python3-filelock (3.17.0-1) ... Removing python3-flufl.lock (8.1.0-2) ... Removing python3-greenlet (3.1.0-1+b2) ... Removing python3-idna (3.10-1) ... Removing python3-itsdangerous (2.2.0-2) ... Removing python3-jinja2 (3.1.5-2) ... Removing python3-jwt (2.10.1-2) ... Removing python3-werkzeug (3.1.3-2) ... Removing python3-markupsafe (2.1.5-1+b3) ... Removing python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... Removing python3-platformdirs (4.3.6-1) ... Removing python3-psutil (7.0.0-1) ... Removing python3-public (4.1.0-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-tz (2025.1-3) ... Removing python3-pytz (2025.1-3) ... Removing python3-tblib (3.0.0-6) ... Removing python3-tomlkit (0.13.2-1) ... Removing python3-tzlocal (5.3.1-1) ... Removing python3-urllib3 (2.3.0-2) ... Removing python3-pkg-resources (75.8.0-1) ... Removing python3-jaraco.context (6.0.1-1) ... Removing python3-inflect (7.3.1-2) ... Removing python3-typeguard (4.4.2-1) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-jaraco.functools (4.1.0-1) ... Removing python3-more-itertools (10.6.0-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing python3 (3.13.2-2) ... Removing python3-minimal (3.13.2-2) ... Removing python3.13 (3.13.2-2) ... Removing python3.13-minimal (3.13.2-2) ... Removing libexpat1:amd64 (2.7.0-1) ... Removing libpython3-stdlib:amd64 (3.13.2-2) ... Removing libpython3.13-stdlib:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.7-1) ... Removing libpython3.13-minimal:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-2) ... Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.41-6) ... 1m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'javascript-common', 'libblas3:amd64', 'libcom-err2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libicu76:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libnorm1t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-idna', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-sqlalchemy', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'readline-common', 'qiime'] 1m5.6s INFO: Running scripts post_remove 1m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_remove_cleanup'] 1m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_remove_cleanup'] 1m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_remove_exceptions'] 1m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_remove_exceptions'] 1m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', 'ca-certificates', 'javascript-common', 'libblas3:amd64', 'libcom-err2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libicu76:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libnorm1t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-idna', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-sqlalchemy', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'readline-common'] 1m5.9s DUMP: (Reading database ... 5471 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for javascript-common (12) ... dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgcrypt20 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgpg-error0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libicu76 which isn't installed Purging configuration files for libjs-bootstrap4 (4.6.1+dfsg1-4) ... Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Purging configuration files for libjs-popper.js (1.16.1+ds-6) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libnorm1t64 which isn't installed dpkg: warning: ignoring request to remove libpgm-5.3-0t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.2-2) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libzmq5 which isn't installed Purging configuration files for media-types (13.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove node-fortawesome-fontawesome-free which isn't installed Purging configuration files for openssl (3.4.1-1) ... Purging configuration files for python3 (3.13.2-2) ... dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-bibtexparser which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dill which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-flask which isn't installed dpkg: warning: ignoring request to remove python3-flask-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-flufl.lock which isn't installed dpkg: warning: ignoring request to remove python3-globus-sdk which isn't installed dpkg: warning: ignoring request to remove python3-greenlet which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-itsdangerous which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.text which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed Purging configuration files for python3-numpy (1:2.2.3+ds-5) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parsl which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-public which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-setproctitle which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-tblib which isn't installed dpkg: warning: ignoring request to remove python3-tomlkit which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-tzlocal which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-werkzeug which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zmq which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.2-2) ... Purging configuration files for readline-common (8.2-6) ... 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', 'ca-certificates', 'javascript-common', 'libblas3:amd64', 'libcom-err2:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgcrypt20:amd64', 'libgfortran5:amd64', 'libgpg-error0:amd64', 'libgssapi-krb5-2:amd64', 'libicu76:amd64', 'libjs-bootstrap4', 'libjs-jquery', 'libjs-popper.js', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libnorm1t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'media-types', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'python3', 'python3-autocommand', 'python3-bcrypt', 'python3-bibtexparser', 'python3-blinker', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-cryptography', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-globus-sdk', 'python3-greenlet', 'python3-idna', 'python3-inflect', 'python3-itsdangerous', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-jaraco.text', 'python3-jinja2', 'python3-jwt', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parsl', 'python3-pkg-resources', 'python3-platformdirs', 'python3-psutil', 'python3-public', 'python3-pyparsing', 'python3-pytz', 'python3-requests', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-sqlalchemy', 'python3-tblib', 'python3-tomlkit', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-werkzeug', 'python3-yaml', 'python3-zipp', 'python3-zmq', 'python3.13', 'python3.13-minimal', 'readline-common'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', 'qiime'] 1m5.9s DUMP: dpkg: warning: ignoring request to remove qiime which isn't installed 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', 'qiime'] 1m5.9s INFO: Running scripts post_purge 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_purge_exceptions'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_purge_exceptions'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_purge_manual_cleanup'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_purge_manual_cleanup'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', '--pending'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--purge', '--pending'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--remove', '--pending'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg', '--remove', '--pending'] 1m5.9s INFO: Running scripts post_test 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_test_exceptions'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'tmp/scripts/post_test_exceptions'] 1m6.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 1m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 1m6.6s DEBUG: No broken symlinks as far as we can find. 1m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-divert', '--list'] 1m6.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'dpkg-divert', '--list'] 1m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'clean'] 1m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6', 'apt-get', 'clean'] 1m6.7s DEBUG: Recording chroot state 1m8.0s INFO: PASS: Installation and purging test. 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/shm'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/shm'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/console'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/console'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/ptmx'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/ptmx'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/pts'] 1m8.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/dev/pts'] 1m8.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/proc'] 1m8.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6/proc'] 1m8.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 1m8.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2e2bpgf6'] 1m8.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2e2bpgf6 1m8.6s INFO: PASS: All tests. 1m8.6s INFO: piuparts run ends. ret=0 End: 2025-03-17 07:46:13 GMT