Start: 2025-04-09 12:42:46 GMT
Package: r-bioc-decoupler
Version: 2.12.0+dfsg-2
Installed-Size: 2241
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-biocparallel, r-cran-broom, r-cran-dplyr, r-cran-magrittr, r-cran-matrix, r-cran-parallelly, r-cran-purrr, r-cran-rlang, r-cran-stringr, r-cran-tibble, r-cran-tidyr, r-cran-tidyselect, r-cran-withr
Suggests: r-cran-glmnet (>= 4.1-7), r-bioc-gsva, r-bioc-summarizedexperiment, r-cran-rpart, r-cran-ranger, r-bioc-biocstyle, r-cran-covr, r-cran-knitr, r-cran-pkgdown, r-cran-rmarkdown, r-cran-roxygen2, r-cran-sessioninfo, r-cran-pheatmap, r-cran-testthat, r-cran-seurat, r-cran-ggplot2, r-cran-ggrepel, r-cran-patchwork, r-cran-magick
Description: infer biological activities from omics data
Homepage: https://bioconductor.org/packages/decoupleR/
Description-md5: ed3289863b137cc1cc62b10f18d9bd4e
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-decoupler/r-bioc-decoupler_2.12.0+dfsg-2_all.deb
Size: 2127780
MD5sum: 2fc85a619f041f5e3e079d369eaa4467
SHA256: a548fbdf2491762b68d4f37956bbd7176ac7255503cd4f79f03ccb0f58bbac45
Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-decoupler=2.12.0+dfsg-2
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-decoupler=2.12.0+dfsg-2
0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_gc8_s2p
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_gc8_s2p
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/proc']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/proc']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/pts']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/pts']
0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/ptmx']
0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/ptmx']
0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/console']
0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/console']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/shm']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/shm']
0m0.5s DEBUG: sources.list:
deb http://deb.debian.org/debian/ sid main
0m0.5s DEBUG: Created policy-rc.d and chmodded it.
0m0.5s DEBUG: Created resolv.conf.
0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_gc8_s2p/tmp/scripts/
0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp_gc8_s2p/tmp/scripts/
0m0.6s INFO: Running scripts post_chroot_unpack
0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'update']
0m4.1s DUMP:
Get:1 http://deb.debian.org/debian sid InRelease [205 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7416 kB]
Fetched 17.8 MB in 3s (6526 kB/s)
Reading package lists...
0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'update']
0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-yf', 'dist-upgrade']
0m5.0s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-yf', 'dist-upgrade']
0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m5.5s DUMP:
18b305595815f83b09c2fe784f2b4851 -
0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m5.5s INFO: Running scripts post_setup
0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_dummy_users']
0m6.5s DUMP:
useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999
useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999
useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999
useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999
useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999
useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999
useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999
useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_dummy_users']
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_fake-essential']
0m8.6s DUMP:
*** Adding fake essential packages ***
Reading package lists...
Building dependency tree...
init-system-helpers is already the newest version (1.68).
The following additional packages will be installed:
libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps
sensible-utils ucf
Suggested packages:
dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks
Recommended packages:
libgpm2 psmisc linux-sysctl-defaults
The following NEW packages will be installed:
dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl
libtext-wrapi18n-perl procps sensible-utils ucf
0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded.
Need to get 1757 kB of archives.
After this operation, 4947 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0051 [42.8 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB]
Preconfiguring packages ...
Fetched 1757 kB in 0s (28.5 MB/s)
Selecting previously unselected package libncursesw6:amd64.
(Reading database ...
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 4926 files and directories currently installed.)
Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.5+20250216-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../6-ucf_3.0051_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0051) ...
Selecting previously unselected package dbconfig-common.
Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ...
Unpacking dbconfig-common (2.0.24) ...
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libproc2-0:amd64 (2:4.0.4-7) ...
Setting up libncursesw6:amd64 (6.5+20250216-2) ...
Setting up sensible-utils (0.0.24) ...
Setting up procps (2:4.0.4-7) ...
Setting up ucf (3.0051) ...
Setting up dbconfig-common (2.0.24) ...
Creating config file /etc/dbconfig-common/config with new version
Processing triggers for libc-bin (2.41-6) ...
0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_fake-essential']
0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_forbid_home']
0m8.6s DUMP:
Disabling /home
Adding 'local diversion of /home to /home.distrib'
0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_forbid_home']
0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_force-unsafe-io']
0m8.6s DUMP:
Enabling dpkg --force-unsafe-io.
Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
'/bin/sync' -> 'true'
0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_force-unsafe-io']
0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_minimize']
0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_minimize']
0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_squeeze-backports']
0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_squeeze-backports']
0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_zz_backports']
0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_setup_zz_backports']
0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'clean']
0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'clean']
0m8.7s DEBUG: Recording chroot state
0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m9.3s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-1.1+b2
install ok installed bsdutils bsdutils 1:2.41-3
install ok installed coreutils coreutils 9.6-2
install ok installed dash dash 0.5.12-12
install ok installed dbconfig-common dbconfig-common 2.0.24
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblkid1:amd64 libblkid1 2.41-3
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-3
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4
install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libuuid1:amd64 libuuid1 2.41-3
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed login login 1:4.16.0-2+really2.41-3
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.41-3
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed procps procps 2:4.0.4-7
install ok installed sed sed 4.9-2
install ok installed sensible-utils sensible-utils 0.0.24
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed ucf ucf 3.0051
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-3
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-divert', '--list']
0m9.3s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-divert', '--list']
0m9.3s INFO: Running scripts is_testable
0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/is_testable_uninstallable']
0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/is_testable_uninstallable']
0m9.3s INFO: apt-cache does not know about any of the requested packages
0m9.3s INFO: Running scripts pre_test
0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_test_exceptions']
0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_test_exceptions']
0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_test_root_password']
0m9.4s DUMP:
New password: Retype new password: passwd: password updated successfully
0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_test_root_password']
0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
0m10.0s DEBUG: No broken symlinks as far as we can find.
0m10.0s INFO: Running scripts pre_install
0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_database-server']
0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_database-server']
0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_exceptions']
0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_exceptions']
0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_extras']
0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_extras']
0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture']
0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture']
0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m11.4s DUMP:
Package: r-bioc-decoupler
Version: 2.12.0+dfsg-2
Installed-Size: 2241
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-biocparallel, r-cran-broom, r-cran-dplyr, r-cran-magrittr, r-cran-matrix, r-cran-parallelly, r-cran-purrr, r-cran-rlang, r-cran-stringr, r-cran-tibble, r-cran-tidyr, r-cran-tidyselect, r-cran-withr
Suggests: r-cran-glmnet (>= 4.1-7), r-bioc-gsva, r-bioc-summarizedexperiment, r-cran-rpart, r-cran-ranger, r-bioc-biocstyle, r-cran-covr, r-cran-knitr, r-cran-pkgdown, r-cran-rmarkdown, r-cran-roxygen2, r-cran-sessioninfo, r-cran-pheatmap, r-cran-testthat, r-cran-seurat, r-cran-ggplot2, r-cran-ggrepel, r-cran-patchwork, r-cran-magick
Description-en: infer biological activities from omics data
Many methods allow one to extract biological activities from omics
data using information from prior knowledge resources, reducing the
dimensionality for increased statistical power and better interpretability.
DecoupleR is a Bioconductor package containing different
statistical methods to extract these signatures within a unified framework.
decoupleR allows the user to flexibly test any method with any resource.
It incorporates methods that take into account the sign and weight of
network interactions. decoupleR can be used with any omic, as long as its
features can be linked to a biological process based on prior knowledge.
For example, in transcriptomics gene sets regulated by a transcription
factor, or in phospho-proteomics phosphosites that are targeted by a kinase.
Description-md5: ed3289863b137cc1cc62b10f18d9bd4e
Homepage: https://bioconductor.org/packages/decoupleR/
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-decoupler/r-bioc-decoupler_2.12.0+dfsg-2_all.deb
Size: 2127780
MD5sum: 2fc85a619f041f5e3e079d369eaa4467
SHA256: a548fbdf2491762b68d4f37956bbd7176ac7255503cd4f79f03ccb0f58bbac45
0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m11.4s DEBUG: metapackage:
Package: piuparts-depends-dummy
Version: 0.invalid.0
Architecture: all
Maintainer: piuparts developers team <piuparts-devel@alioth-lists.debian.net>
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-biocparallel, r-cran-broom, r-cran-dplyr, r-cran-magrittr, r-cran-matrix, r-cran-parallelly, r-cran-purrr, r-cran-rlang, r-cran-stringr, r-cran-tibble, r-cran-tidyr, r-cran-tidyselect, r-cran-withr
Description: Dummy package to satisfy dependencies - created by piuparts
This package was created automatically by piuparts and can safely be removed
0m11.4s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpy49vvmfs/piuparts-depends-dummy']
0m11.5s DUMP:
dpkg-deb: warning: not checking contents of control area
dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpy49vvmfs/piuparts-depends-dummy.deb'.
0m11.5s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpy49vvmfs/piuparts-depends-dummy']
0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt']
0m11.5s DUMP:
3.0.0
0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt']
0m11.5s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpy49vvmfs/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp_gc8_s2p/tmp
0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb']
0m31.3s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
ca-certificates fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev
libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev
libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1
libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64
libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libhwasan0 libice6 libicu76 libidn2-0 libitm1 libjbig0 libjpeg62-turbo
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2
liblerc4 liblsan0 libnghttp2-14 libnghttp3-9 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxrender1 libxss1 libxt6t64 linux-libc-dev openssl r-base-core
r-bioc-biocgenerics r-bioc-biocparallel r-cran-backports r-cran-bh
r-cran-broom r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-dplyr
r-cran-fansi r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-generics r-cran-glue r-cran-lambda.r r-cran-lattice r-cran-lifecycle
r-cran-magrittr r-cran-matrix r-cran-parallelly r-cran-pillar
r-cran-pkgconfig r-cran-purrr r-cran-r6 r-cran-rlang r-cran-snow
r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-utf8 r-cran-vctrs r-cran-withr readline-common rpcsvc-proto unzip
x11-common xdg-utils zip
Suggested packages:
libboost-doc libboost1.83-doc libboost-atomic1.83-dev
libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
libboost-contract1.83-dev libboost-coroutine1.83-dev
libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
libboost-serialization1.83-dev libboost-stacktrace1.83-dev
libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
libc-devtools glibc-doc manpages-dev low-memory-monitor gnutls-bin krb5-doc
krb5-user libstdc++-14-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf
r-mathlib r-base-html r-bioc-biobase r-bioc-s4vectors r-bioc-iranges
r-bioc-s4arrays r-bioc-sparsearray r-bioc-delayedarray r-bioc-hdf5array
r-bioc-genomicranges r-bioc-pwalign r-bioc-rsamtools r-bioc-annotationdbi
r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-foreach
r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation
r-bioc-genomicalignments r-bioc-shortread r-bioc-biocstyle r-cran-knitr
r-cran-batchtools r-cran-data.table r-cran-jsonlite r-cran-covr
r-cran-rmarkdown r-cran-testthat r-cran-rmpi r-cran-rlecuyer readline-doc
Recommended packages:
manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs
krb5-locales libldap-common publicsuffix libsasl2-modules r-recommended
r-base-dev r-doc-html r-cran-aer r-cran-bbmle r-cran-boot r-cran-car
r-cran-cardata r-cran-caret r-cran-cluster r-cran-cmprsk r-cran-coda
r-cran-covr r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-gam r-cran-gee
r-cran-geepack r-cran-ggplot2 r-cran-glmnet r-cran-gmm r-cran-hmisc
r-cran-irlba r-cran-interp r-cran-knitr r-cran-ks r-cran-lavaan r-cran-leaps
r-cran-lme4 r-cran-lmtest r-cran-lsmeans r-cran-maps r-cran-mass
r-cran-mclust r-cran-metafor r-cran-mgcv r-cran-modeldata r-cran-multcomp
r-cran-network r-cran-nnet r-cran-ordinal r-cran-plm r-cran-psych
r-cran-quantreg r-cran-rmarkdown r-cran-robust r-cran-robustbase
r-cran-rsample r-cran-sandwich r-cran-spdep r-cran-spatialreg
r-cran-spelling r-cran-survey r-cran-survival r-cran-systemfit
r-cran-testthat r-cran-tseries r-cran-zoo r-cran-callr r-cran-crayon
r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps
r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio
r-cran-decor r-cran-desc r-cran-lobstr r-cran-mockery r-cran-progress
r-cran-scales r-cran-rcpp r-cran-dbi r-cran-dbplyr r-cran-microbenchmark
r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-unitizer r-cran-shiny
r-cran-testit r-cran-pkgload r-cran-waldo r-cran-lintr r-cran-tidyverse
r-cran-commonmark r-cran-base64enc r-cran-bit64 r-cran-diagrammer
r-cran-formattable r-cran-lubridate r-cran-nanotime r-cran-palmerpenguins
r-cran-units r-cran-vdiffr r-cran-httr r-cran-fs r-cran-usethis r-cran-blob
r-cran-evaluate r-cran-here r-cran-hms r-cran-pkgbuild r-cran-data.table
r-cran-readr r-cran-pkgdown r-cran-xml2 r-cran-zeallot libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
ca-certificates fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev
libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev
libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1
libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64
libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libhwasan0 libice6 libicu76 libidn2-0 libitm1 libjbig0 libjpeg62-turbo
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2
liblerc4 liblsan0 libnghttp2-14 libnghttp3-9 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxrender1 libxss1 libxt6t64 linux-libc-dev openssl
piuparts-depends-dummy r-base-core r-bioc-biocgenerics r-bioc-biocparallel
r-cran-backports r-cran-bh r-cran-broom r-cran-cli r-cran-codetools
r-cran-cpp11 r-cran-dplyr r-cran-fansi r-cran-formatr r-cran-futile.logger
r-cran-futile.options r-cran-generics r-cran-glue r-cran-lambda.r
r-cran-lattice r-cran-lifecycle r-cran-magrittr r-cran-matrix
r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-purrr r-cran-r6
r-cran-rlang r-cran-snow r-cran-stringi r-cran-stringr r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr
readline-common rpcsvc-proto unzip x11-common xdg-utils zip
0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded.
Need to get 113 MB/113 MB of archives.
After this operation, 446 MB of additional disk space will be used.
Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [724 B]
Get:2 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.0-1 [1491 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-19 [2725 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B]
Get:16 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB]
Get:22 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB]
Get:23 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB]
Get:24 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB]
Get:25 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-6 [57.0 kB]
Get:26 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.21-1 [2542 kB]
Get:27 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB]
Get:28 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB]
Get:29 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-6 [1988 kB]
Get:30 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB]
Get:31 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB]
Get:32 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B]
Get:33 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get:34 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get:35 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get:36 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get:37 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get:38 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
Get:39 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get:40 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get:41 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get:42 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB]
Get:43 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB]
Get:44 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get:45 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get:46 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get:47 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-5 [9316 B]
Get:48 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get:49 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get:50 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:51 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get:52 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:53 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:54 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get:55 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:56 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:57 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:58 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get:59 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:60 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:61 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:62 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:63 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:64 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB]
Get:65 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get:66 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get:67 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get:68 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB]
Get:69 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB]
Get:70 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get:71 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB]
Get:72 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB]
Get:73 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get:74 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-3 [9721 kB]
Get:75 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get:76 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get:77 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get:78 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get:79 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:80 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get:81 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB]
Get:82 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB]
Get:83 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB]
Get:84 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB]
Get:85 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB]
Get:86 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:87 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get:88 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB]
Get:89 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get:90 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get:91 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB]
Get:92 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB]
Get:93 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB]
Get:94 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get:95 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get:96 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get:97 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get:98 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB]
Get:99 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB]
Get:100 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get:101 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.3-1+b1 [28.3 MB]
Get:102 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB]
Get:103 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-2 [152 kB]
Get:104 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:105 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:106 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:107 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:108 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB]
Get:109 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B]
Get:110 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB]
Get:111 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.40.0-2 [1326 kB]
Get:112 http://deb.debian.org/debian sid/main amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
Get:113 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB]
Get:114 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB]
Get:115 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB]
Get:116 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.5-1 [1712 kB]
Get:117 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:118 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB]
Get:119 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB]
Get:120 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB]
Get:121 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
Get:122 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-1 [106 kB]
Get:123 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.6-1 [629 kB]
Get:124 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:125 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB]
Get:126 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get:127 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB]
Get:128 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB]
Get:129 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.0.4-1 [556 kB]
Get:130 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.4-1+b1 [896 kB]
Get:131 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB]
Get:132 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB]
Get:133 http://deb.debian.org/debian sid/main amd64 r-cran-broom all 1.0.7+dfsg-1 [1846 kB]
Get:134 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB]
Get:135 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB]
Get:136 http://deb.debian.org/debian sid/main amd64 r-cran-parallelly amd64 1.42.0-1 [541 kB]
Preconfiguring packages ...
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Selecting previously unselected package libpixman-1-0:amd64.
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Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Setting up libboost-dev:amd64 (1.83.0.2+b2) ...
Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Setting up libcurl4t64:amd64 (8.13.0-1) ...
Setting up r-base-core (4.4.3-1+b1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.22-7-1) ...
Setting up r-cran-formatr (1.14-2) ...
Setting up r-cran-r6 (2.6.1-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-bh (1.84.0-1) ...
Setting up r-cran-codetools (0.2-20-1) ...
Setting up r-bioc-biocgenerics (0.52.0-2) ...
Setting up r-cran-rlang (1.1.5-1) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-backports (1.5.0-2) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-fansi (1.0.6-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-cli (3.6.4-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-parallelly (1.42.0-1) ...
Setting up r-cran-stringi (1.8.4-1+b1) ...
Setting up r-cran-cpp11 (0.5.2-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-matrix (1.7-3-1) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-pillar (1.10.1+dfsg-1) ...
Setting up r-cran-stringr (1.5.1-1) ...
Setting up r-bioc-biocparallel (1.40.0-2) ...
Setting up r-cran-tibble (3.2.1+dfsg-3) ...
Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
Setting up r-cran-purrr (1.0.4-1) ...
Setting up r-cran-dplyr (1.1.4-4) ...
Setting up r-cran-tidyr (1.3.1-1) ...
Setting up r-cran-broom (1.0.7+dfsg-1) ...
Setting up piuparts-depends-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.41-6) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb']
0m31.3s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok
0m31.3s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp_gc8_s2p/./tmp/piuparts-depends-dummy.deb
0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy']
0m31.3s DUMP:
piuparts-depends-dummy install ok installed
0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy']
0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m31.3s DUMP:
(Reading database ... 33546 files and directories currently installed.)
Removing piuparts-depends-dummy (0.invalid.0) ...
0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'clean']
0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'clean']
0m31.3s DEBUG: Recording chroot state
0m32.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
0m34.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
0m36.7s DEBUG: No broken symlinks as far as we can find.
0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy']
0m37.5s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy']
0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy', 'r-bioc-decoupler']
0m37.5s DUMP:
r-bioc-decoupler:
Installed: (none)
Candidate: 2.12.0+dfsg-2
Version table:
2.12.0+dfsg-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
0m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy', 'r-bioc-decoupler']
0m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', 'install', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m39.0s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Suggested packages:
r-cran-glmnet r-bioc-gsva r-bioc-summarizedexperiment r-cran-rpart
r-cran-ranger r-bioc-biocstyle r-cran-covr r-cran-knitr r-cran-pkgdown
r-cran-rmarkdown r-cran-roxygen2 r-cran-sessioninfo r-cran-pheatmap
r-cran-testthat r-cran-seurat r-cran-ggplot2 r-cran-ggrepel r-cran-patchwork
r-cran-magick
The following NEW packages will be installed:
r-bioc-decoupler
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 2128 kB of archives.
After this operation, 2295 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-decoupler all 2.12.0+dfsg-2 [2128 kB]
Fetched 2128 kB in 0s (7605 kB/s)
Selecting previously unselected package r-bioc-decoupler.
(Reading database ...
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 33546 files and directories currently installed.)
Preparing to unpack .../r-bioc-decoupler_2.12.0+dfsg-2_all.deb ...
Unpacking r-bioc-decoupler (2.12.0+dfsg-2) ...
Setting up r-bioc-decoupler (2.12.0+dfsg-2) ...
0m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', 'install', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m39.0s INFO: Running scripts post_install
0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_install_exceptions']
0m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_install_exceptions']
0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'systemd-tmpfiles', '--cat-config']
0m39.0s DUMP:
chroot: failed to run command 'systemd-tmpfiles': No such file or directory
0m39.0s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'systemd-tmpfiles', '--cat-config']
0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'remove', 'r-bioc-decoupler']
0m40.2s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libasan8
libatomic1 libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin
libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4t64 libdatrie1
libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0
libgcc-14-dev libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu76
libitm1 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libnghttp2-14
libnghttp3-9 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpng16-16t64
libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxrender1 libxss1 libxt6t64 linux-libc-dev r-base-core r-bioc-biocgenerics
r-bioc-biocparallel r-cran-backports r-cran-bh r-cran-broom r-cran-cli
r-cran-codetools r-cran-cpp11 r-cran-dplyr r-cran-fansi r-cran-formatr
r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue
r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-magrittr
r-cran-matrix r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-purrr
r-cran-r6 r-cran-rlang r-cran-snow r-cran-stringi r-cran-stringr
r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs
r-cran-withr readline-common rpcsvc-proto unzip x11-common xdg-utils zip
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
r-bioc-decoupler
0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
After this operation, 2295 kB disk space will be freed.
(Reading database ...
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(Reading database ... 45%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 33628 files and directories currently installed.)
Removing r-bioc-decoupler (2.12.0+dfsg-2) ...
0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'remove', 'r-bioc-decoupler']
0m40.2s INFO: Reinstalling after remove
0m40.2s INFO: Running scripts pre_install
0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_database-server']
0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_database-server']
0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_exceptions']
0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_exceptions']
0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_extras']
0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_extras']
0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture']
0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture']
0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy']
0m40.3s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy']
0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy', 'r-bioc-decoupler']
0m40.3s DUMP:
r-bioc-decoupler:
Installed: (none)
Candidate: 2.12.0+dfsg-2
Version table:
2.12.0+dfsg-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy', 'r-bioc-decoupler']
0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', 'install', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m41.3s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Suggested packages:
r-cran-glmnet r-bioc-gsva r-bioc-summarizedexperiment r-cran-rpart
r-cran-ranger r-bioc-biocstyle r-cran-covr r-cran-knitr r-cran-pkgdown
r-cran-rmarkdown r-cran-roxygen2 r-cran-sessioninfo r-cran-pheatmap
r-cran-testthat r-cran-seurat r-cran-ggplot2 r-cran-ggrepel r-cran-patchwork
r-cran-magick
The following NEW packages will be installed:
r-bioc-decoupler
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/2128 kB of archives.
After this operation, 2295 kB of additional disk space will be used.
Selecting previously unselected package r-bioc-decoupler.
(Reading database ...
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(Reading database ... 35%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 33546 files and directories currently installed.)
Preparing to unpack .../r-bioc-decoupler_2.12.0+dfsg-2_all.deb ...
Unpacking r-bioc-decoupler (2.12.0+dfsg-2) ...
Setting up r-bioc-decoupler (2.12.0+dfsg-2) ...
0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', 'install', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m41.3s INFO: Running scripts post_install
0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_install_exceptions']
0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_install_exceptions']
0m41.3s INFO: Running scripts pre_install
0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_database-server']
0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_database-server']
0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_exceptions']
0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_exceptions']
0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_extras']
0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_extras']
0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture']
0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture']
0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m41.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m41.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy']
0m41.4s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy']
0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy', 'r-bioc-decoupler']
0m41.4s DUMP:
r-bioc-decoupler:
Installed: 2.12.0+dfsg-2
Candidate: 2.12.0+dfsg-2
Version table:
*** 2.12.0+dfsg-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
100 /var/lib/dpkg/status
0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-cache', 'policy', 'r-bioc-decoupler']
0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m42.4s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded.
Need to get 0 B/2128 kB of archives.
After this operation, 0 B of additional disk space will be used.
(Reading database ...
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(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 33628 files and directories currently installed.)
Preparing to unpack .../r-bioc-decoupler_2.12.0+dfsg-2_all.deb ...
Unpacking r-bioc-decoupler (2.12.0+dfsg-2) over (2.12.0+dfsg-2) ...
Setting up r-bioc-decoupler (2.12.0+dfsg-2) ...
0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-decoupler=2.12.0+dfsg-2']
0m42.4s INFO: Running scripts post_install
0m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_install_exceptions']
0m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_install_exceptions']
0m42.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
0m44.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
0m46.8s DEBUG: No broken symlinks as far as we can find.
0m48.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', '-ac', '--ignore-obsolete']
0m51.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', '-ac', '--ignore-obsolete']
0m51.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m51.3s DUMP:
0.15.6
0m51.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m51.3s INFO: Running adequate version 0.15.6 now.
0m51.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'r-bioc-decoupler']
0m51.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'r-bioc-decoupler']
0m51.4s INFO: Running scripts pre_remove
0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m55.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m55.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m55.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m55.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_exceptions']
0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_exceptions']
0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_preseed_cleanup']
0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/pre_remove_preseed_cleanup']
0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m55.6s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-1.1+b2
install ok installed bsdutils bsdutils 1:2.41-3
install ok installed ca-certificates ca-certificates 20241223
install ok installed coreutils coreutils 9.6-2
install ok installed dash dash 0.5.12-12
install ok installed dbconfig-common dbconfig-common 2.0.24
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed fontconfig fontconfig 2.15.0-2.3
install ok installed fontconfig-config fontconfig-config 2.15.0-2.3
install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8
install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libasan8:amd64 libasan8 14.2.0-19
install ok installed libatomic1:amd64 libatomic1 14.2.0-19
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblas3:amd64 libblas3 3.12.1-2
install ok installed libblkid1:amd64 libblkid1 2.41-3
install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2
install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4.2
install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc-dev-bin libc-dev-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libc6-dev:amd64 libc6-dev 2.41-6
install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1
install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0-1
install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278
install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1
install ok installed libexpat1:amd64 libexpat1 2.7.1-1
install ok installed libffi8:amd64 libffi8 3.4.7-1
install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3
install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1
install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1
install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-19
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19
install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.1-1
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2
install ok installed libgomp1:amd64 libgomp1 14.2.0-19
install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1
install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5
install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed libhwasan0:amd64 libhwasan0 14.2.0-19
install ok installed libice6:amd64 libice6 2:1.1.1-1
install ok installed libicu76:amd64 libicu76 76.1-3
install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2
install ok installed libitm1:amd64 libitm1 14.2.0-19
install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2
install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1
install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5
install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-5
install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5
install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5
install ok installed liblapack3:amd64 liblapack3 3.12.1-2
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3
install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2
install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5
install ok installed liblsan0:amd64 liblsan0 14.2.0-19
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-3
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1
install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1
install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-1
install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-1
install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-1
install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b2
install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b2
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3
install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1.1
install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7
install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1
install ok installed libquadmath0:amd64 libquadmath0 14.2.0-19
install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6
install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5
install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9
install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1
install ok installed libsm6:amd64 libsm6 2:1.2.6-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1
install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1
install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-19
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2
install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1
install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4
install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10
install ok installed libthai-data libthai-data 0.1.29-2
install ok installed libthai0:amd64 libthai0 0.1.29-2+b1
install ok installed libtiff6:amd64 libtiff6 4.7.0-3
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1
install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1
install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1
install ok installed libtsan2:amd64 libtsan2 14.2.0-19
install ok installed libubsan1:amd64 libubsan1 14.2.0-19
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libunistring5:amd64 libunistring5 1.3-2
install ok installed libuuid1:amd64 libuuid1 2.41-3
install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1
install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1
install ok installed libx11-data libx11-data 2:1.8.12-1
install ok installed libxau6:amd64 libxau6 1:1.0.11-1
install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1
install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1
install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1
install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1
install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3
install ok installed libxft2:amd64 libxft2 2.3.6-1+b4
install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1
install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3
install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed linux-libc-dev linux-libc-dev 6.12.21-1
install ok installed login login 1:4.16.0-2+really2.41-3
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.41-3
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed openssl openssl 3.5.0-1
install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed procps procps 2:4.0.4-7
install ok installed r-base-core r-base-core 4.4.3-1+b1
install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2
install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.40.0-2
install ok installed r-bioc-decoupler r-bioc-decoupler 2.12.0+dfsg-2
install ok installed r-cran-backports r-cran-backports 1.5.0-2
install ok installed r-cran-bh r-cran-bh 1.84.0-1
install ok installed r-cran-broom r-cran-broom 1.0.7+dfsg-1
install ok installed r-cran-cli r-cran-cli 3.6.4-1
install ok installed r-cran-codetools r-cran-codetools 0.2-20-1
install ok installed r-cran-cpp11 r-cran-cpp11 0.5.2-1
install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-4
install ok installed r-cran-fansi r-cran-fansi 1.0.6-1
install ok installed r-cran-formatr r-cran-formatr 1.14-2
install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4
install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3
install ok installed r-cran-generics r-cran-generics 0.1.3-1
install ok installed r-cran-glue r-cran-glue 1.8.0-1
install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2
install ok installed r-cran-lattice r-cran-lattice 0.22-7-1
install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1
install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1
install ok installed r-cran-matrix r-cran-matrix 1.7-3-1
install ok installed r-cran-parallelly r-cran-parallelly 1.42.0-1
install ok installed r-cran-pillar r-cran-pillar 1.10.1+dfsg-1
install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2
install ok installed r-cran-purrr r-cran-purrr 1.0.4-1
install ok installed r-cran-r6 r-cran-r6 2.6.1-1
install ok installed r-cran-rlang r-cran-rlang 1.1.5-1
install ok installed r-cran-snow r-cran-snow 1:0.4.4-2
install ok installed r-cran-stringi r-cran-stringi 1.8.4-1+b1
install ok installed r-cran-stringr r-cran-stringr 1.5.1-1
install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-3
install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1
install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-1
install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1
install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1
install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1
install ok installed readline-common readline-common 8.2-6
install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1
install ok installed sed sed 4.9-2
install ok installed sensible-utils sensible-utils 0.0.24
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed ucf ucf 3.0051
install ok installed unzip unzip 6.0-29
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-3
install ok installed x11-common x11-common 1:7.7+24
install ok installed xdg-utils xdg-utils 1.2.1-2
install ok installed zip zip 3.0-14
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-cran-backports', 'r-cran-bh', 'r-cran-broom', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rlang', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-decoupler']
0m58.6s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
ca-certificates fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev
libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev
libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1
libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64
libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libhwasan0 libice6 libicu76 libidn2-0 libitm1 libjbig0 libjpeg62-turbo
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2
liblerc4 liblsan0 libnghttp2-14 libnghttp3-9 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxrender1 libxss1 libxt6t64 linux-libc-dev openssl r-base-core
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-decoupler r-cran-backports
r-cran-bh r-cran-broom r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-dplyr
r-cran-fansi r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-generics r-cran-glue r-cran-lambda.r r-cran-lattice r-cran-lifecycle
r-cran-magrittr r-cran-matrix r-cran-parallelly r-cran-pillar
r-cran-pkgconfig r-cran-purrr r-cran-r6 r-cran-rlang r-cran-snow
r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-utf8 r-cran-vctrs r-cran-withr readline-common rpcsvc-proto unzip
x11-common xdg-utils zip
0 upgraded, 0 newly installed, 136 to remove and 0 not upgraded.
After this operation, 449 MB disk space will be freed.
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(Reading database ... 33628 files and directories currently installed.)
Removing r-bioc-decoupler (2.12.0+dfsg-2) ...
Removing r-cran-matrix (1.7-3-1) ...
Removing r-bioc-biocparallel (1.40.0-2) ...
Removing r-cran-snow (1:0.4.4-2) ...
Removing r-cran-broom (1.0.7+dfsg-1) ...
Removing r-cran-tidyr (1.3.1-1) ...
Removing r-cran-dplyr (1.1.4-4) ...
Removing r-cran-tidyselect (1.2.1+dfsg-1) ...
Removing r-cran-withr (3.0.2+dfsg-1) ...
Removing r-cran-bh (1.84.0-1) ...
Removing libboost-dev:amd64 (1.83.0.2+b2) ...
Removing libboost1.83-dev:amd64 (1.83.0-4.2) ...
Removing libstdc++-14-dev:amd64 (14.2.0-19) ...
Removing libgcc-14-dev:amd64 (14.2.0-19) ...
Removing libasan8:amd64 (14.2.0-19) ...
Removing libc6-dev:amd64 (2.41-6) ...
Removing libc-dev-bin (2.41-6) ...
Removing libcrypt-dev:amd64 (1:4.4.38-1) ...
Removing libhwasan0:amd64 (14.2.0-19) ...
Removing r-cran-stringr (1.5.1-1) ...
Removing r-cran-stringi (1.8.4-1+b1) ...
Removing libitm1:amd64 (14.2.0-19) ...
Removing liblsan0:amd64 (14.2.0-19) ...
Removing libquadmath0:amd64 (14.2.0-19) ...
Removing libtsan2:amd64 (14.2.0-19) ...
Removing libubsan1:amd64 (14.2.0-19) ...
Removing linux-libc-dev (6.12.21-1) ...
Removing r-bioc-biocgenerics (0.52.0-2) ...
Removing r-cran-backports (1.5.0-2) ...
Removing r-cran-purrr (1.0.4-1) ...
Removing r-cran-codetools (0.2-20-1) ...
Removing r-cran-cpp11 (0.5.2-1) ...
Removing r-cran-futile.logger (1.4.3-4) ...
Removing r-cran-lambda.r (1.2.4-2) ...
Removing r-cran-formatr (1.14-2) ...
Removing r-cran-futile.options (1.0.1-3) ...
Removing r-cran-generics (0.1.3-1) ...
Removing r-cran-lattice (0.22-7-1) ...
Removing r-cran-parallelly (1.42.0-1) ...
Removing r-cran-r6 (2.6.1-1) ...
Removing rpcsvc-proto (1.4.3-1) ...
Removing r-cran-tibble (3.2.1+dfsg-3) ...
Removing r-cran-pkgconfig (2.0.3-2) ...
Removing r-cran-pillar (1.10.1+dfsg-1) ...
Removing r-cran-fansi (1.0.6-1) ...
Removing r-cran-magrittr (2.0.3-1) ...
Removing r-cran-utf8 (1.2.4-1) ...
Removing r-cran-vctrs (0.6.5-1) ...
Removing r-cran-lifecycle (1.0.4+dfsg-1) ...
Removing r-cran-glue (1.8.0-1) ...
Removing r-cran-rlang (1.1.5-1) ...
Removing r-cran-cli (3.6.4-1) ...
Removing r-base-core (4.4.3-1+b1) ...
Removing ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Removing libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Removing libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Removing libpango-1.0-0:amd64 (1.56.3-1) ...
Removing fontconfig (2.15.0-2.3) ...
Removing libtk8.6:amd64 (8.6.16-1) ...
Removing libxft2:amd64 (2.3.6-1+b4) ...
Removing libcairo2:amd64 (1.18.4-1+b1) ...
Removing libfontconfig1:amd64 (2.15.0-2.3) ...
Removing fontconfig-config (2.15.0-2.3) ...
Removing fonts-dejavu-core (2.37-8) ...
Removing fonts-dejavu-mono (2.37-8) ...
Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Removing libglib2.0-0t64:amd64 (2.84.1-1) ...
Removing libatomic1:amd64 (14.2.0-19) ...
Removing liblapack3:amd64 (3.12.1-2) ...
Removing libblas3:amd64 (3.12.1-2) ...
Removing libfreetype6:amd64 (2.13.3+dfsg-1) ...
Removing libcurl4t64:amd64 (8.13.0-1) ...
Removing libbrotli1:amd64 (1.1.0-2+b7) ...
Removing libtirpc3t64:amd64 (1.3.6+ds-1) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Removing libgssapi-krb5-2:amd64 (1.21.3-5) ...
Removing libkrb5-3:amd64 (1.21.3-5) ...
Removing libcom-err2:amd64 (1.47.2-1+b1) ...
Removing libthai0:amd64 (0.1.29-2+b1) ...
Removing libdatrie1:amd64 (0.2.13-3+b1) ...
Removing libtiff6:amd64 (4.7.0-3) ...
Removing libdeflate0:amd64 (1.23-1+b1) ...
Removing libexpat1:amd64 (2.7.1-1) ...
Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Removing libgnutls30t64:amd64 (3.8.9-2) ...
Removing libp11-kit0:amd64 (0.25.5-3) ...
Removing libffi8:amd64 (3.4.7-1) ...
Removing libfribidi0:amd64 (1.0.16-1) ...
Removing libgfortran5:amd64 (14.2.0-19) ...
Removing libgomp1:amd64 (14.2.0-19) ...
Removing libgraphite2-3:amd64 (1.3.14-2+b1) ...
Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Removing libsm6:amd64 (2:1.2.6-1) ...
Removing libice6:amd64 (2:1.1.1-1) ...
Removing libicu76:amd64 (76.1-3) ...
Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Removing libidn2-0:amd64 (2.3.8-2) ...
Removing libjbig0:amd64 (2.1-6.1+b2) ...
Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Removing libk5crypto3:amd64 (1.21.3-5) ...
Removing libkeyutils1:amd64 (1.6.3-5) ...
Removing libkrb5support0:amd64 (1.21.3-5) ...
Removing libldap2:amd64 (2.6.9+dfsg-2) ...
Removing liblerc4:amd64 (4.0.0+ds-5) ...
Removing libnghttp2-14:amd64 (1.64.0-1) ...
Removing libnghttp3-9:amd64 (1.8.0-1) ...
Removing libpaper-utils (2.2.5-0.3+b2) ...
Removing libpaper2:amd64 (2.2.5-0.3+b2) ...
Removing libpixman-1-0:amd64 (0.44.0-3) ...
Removing libpng16-16t64:amd64 (1.6.47-1.1) ...
Removing libreadline8t64:amd64 (8.2-6) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Removing libwebp7:amd64 (1.5.0-0.1) ...
Removing libsharpyuv0:amd64 (1.5.0-0.1) ...
Removing libssh2-1t64:amd64 (1.11.1-1) ...
Removing libtasn1-6:amd64 (4.20.0-2) ...
Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Removing libthai-data (0.1.29-2) ...
Removing libtirpc-common (1.3.6+ds-1) ...
Removing libunistring5:amd64 (1.3-2) ...
Removing libxss1:amd64 (1:1.2.3-1+b3) ...
Removing libxrender1:amd64 (1:0.9.12-1) ...
Removing libxcb-shm0:amd64 (1.17.0-2+b1) ...
Removing libxcb-render0:amd64 (1.17.0-2+b1) ...
Removing libxext6:amd64 (2:1.3.4-1+b3) ...
Removing openssl (3.5.0-1) ...
Removing readline-common (8.2-6) ...
Removing unzip (6.0-29) ...
Removing x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of stop.
Removing xdg-utils (1.2.1-2) ...
Removing zip (3.0-14) ...
Removing libx11-6:amd64 (2:1.8.12-1) ...
Removing libx11-data (2:1.8.12-1) ...
Removing libxcb1:amd64 (1.17.0-2+b1) ...
Removing libxau6:amd64 (1:1.0.11-1) ...
Removing libxdmcp6:amd64 (1:1.1.5-1) ...
Processing triggers for libc-bin (2.41-6) ...
0m58.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-cran-backports', 'r-cran-bh', 'r-cran-broom', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rlang', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-decoupler']
0m58.6s INFO: Running scripts post_remove
0m58.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_remove_cleanup']
0m58.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_remove_cleanup']
0m58.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_remove_exceptions']
0m58.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_remove_exceptions']
0m58.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-cran-backports', 'r-cran-bh', 'r-cran-broom', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rlang', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip']
0m59.2s DUMP:
(Reading database ... 5520 files and directories currently installed.)
Purging configuration files for ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Purging configuration files for fontconfig (2.15.0-2.3) ...
Purging configuration files for fontconfig-config (2.15.0-2.3) ...
Purging configuration files for fonts-dejavu-core (2.37-8) ...
Purging configuration files for fonts-dejavu-mono (2.37-8) ...
dpkg: warning: ignoring request to remove libasan8 which isn't installed
dpkg: warning: ignoring request to remove libatomic1 which isn't installed
dpkg: warning: ignoring request to remove libblas3 which isn't installed
dpkg: warning: ignoring request to remove libboost-dev which isn't installed
dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed
dpkg: warning: ignoring request to remove libbrotli1 which isn't installed
dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed
dpkg: warning: ignoring request to remove libc6-dev which isn't installed
dpkg: warning: ignoring request to remove libcairo2 which isn't installed
dpkg: warning: ignoring request to remove libcom-err2 which isn't installed
Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ...
dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed
dpkg: warning: ignoring request to remove libdatrie1 which isn't installed
dpkg: warning: ignoring request to remove libdeflate0 which isn't installed
dpkg: warning: ignoring request to remove libexpat1 which isn't installed
dpkg: warning: ignoring request to remove libffi8 which isn't installed
dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed
dpkg: warning: ignoring request to remove libfreetype6 which isn't installed
dpkg: warning: ignoring request to remove libfribidi0 which isn't installed
dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed
dpkg: warning: ignoring request to remove libgfortran5 which isn't installed
Purging configuration files for libglib2.0-0t64:amd64 (2.84.1-1) ...
dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed
dpkg: warning: ignoring request to remove libgomp1 which isn't installed
dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed
Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ...
dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed
dpkg: warning: ignoring request to remove libhwasan0 which isn't installed
dpkg: warning: ignoring request to remove libice6 which isn't installed
dpkg: warning: ignoring request to remove libicu76 which isn't installed
dpkg: warning: ignoring request to remove libidn2-0 which isn't installed
dpkg: warning: ignoring request to remove libitm1 which isn't installed
dpkg: warning: ignoring request to remove libjbig0 which isn't installed
dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed
dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed
dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed
dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed
dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed
dpkg: warning: ignoring request to remove liblapack3 which isn't installed
dpkg: warning: ignoring request to remove libldap2 which isn't installed
dpkg: warning: ignoring request to remove liblerc4 which isn't installed
dpkg: warning: ignoring request to remove liblsan0 which isn't installed
dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed
dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed
dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed
dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpaper-utils which isn't installed
Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b2) ...
dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed
dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed
dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed
dpkg: warning: ignoring request to remove libquadmath0 which isn't installed
Purging configuration files for libreadline8t64:amd64 (8.2-6) ...
dpkg: warning: ignoring request to remove librtmp1 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed
dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed
dpkg: warning: ignoring request to remove libsm6 which isn't installed
dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed
dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed
dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed
dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed
dpkg: warning: ignoring request to remove libthai-data which isn't installed
dpkg: warning: ignoring request to remove libthai0 which isn't installed
dpkg: warning: ignoring request to remove libtiff6 which isn't installed
Purging configuration files for libtirpc-common (1.3.6+ds-1) ...
Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ...
dpkg: warning: ignoring request to remove libtk8.6 which isn't installed
dpkg: warning: ignoring request to remove libtsan2 which isn't installed
dpkg: warning: ignoring request to remove libubsan1 which isn't installed
dpkg: warning: ignoring request to remove libunistring5 which isn't installed
dpkg: warning: ignoring request to remove libwebp7 which isn't installed
dpkg: warning: ignoring request to remove libx11-6 which isn't installed
dpkg: warning: ignoring request to remove libx11-data which isn't installed
dpkg: warning: ignoring request to remove libxau6 which isn't installed
dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed
dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed
dpkg: warning: ignoring request to remove libxcb1 which isn't installed
dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed
dpkg: warning: ignoring request to remove libxext6 which isn't installed
dpkg: warning: ignoring request to remove libxft2 which isn't installed
dpkg: warning: ignoring request to remove libxrender1 which isn't installed
dpkg: warning: ignoring request to remove libxss1 which isn't installed
dpkg: warning: ignoring request to remove libxt6t64 which isn't installed
dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed
Purging configuration files for openssl (3.5.0-1) ...
Purging configuration files for r-base-core (4.4.3-1+b1) ...
dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed
dpkg: warning: ignoring request to remove r-cran-backports which isn't installed
dpkg: warning: ignoring request to remove r-cran-bh which isn't installed
dpkg: warning: ignoring request to remove r-cran-broom which isn't installed
dpkg: warning: ignoring request to remove r-cran-cli which isn't installed
dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed
dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed
dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed
dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed
dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed
dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed
dpkg: warning: ignoring request to remove r-cran-generics which isn't installed
dpkg: warning: ignoring request to remove r-cran-glue which isn't installed
dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed
dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed
dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed
dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed
dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed
dpkg: warning: ignoring request to remove r-cran-parallelly which isn't installed
dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed
dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed
dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed
dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed
dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed
dpkg: warning: ignoring request to remove r-cran-snow which isn't installed
dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed
dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed
dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed
dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed
dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed
dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed
dpkg: warning: ignoring request to remove r-cran-withr which isn't installed
Purging configuration files for readline-common (8.2-6) ...
dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed
dpkg: warning: ignoring request to remove unzip which isn't installed
Purging configuration files for x11-common (1:7.7+24) ...
dpkg: warning: ignoring request to remove xdg-utils which isn't installed
dpkg: warning: ignoring request to remove zip which isn't installed
0m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-cran-backports', 'r-cran-bh', 'r-cran-broom', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rlang', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip']
0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', 'r-bioc-decoupler']
0m59.2s DUMP:
dpkg: warning: ignoring request to remove r-bioc-decoupler which isn't installed
0m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', 'r-bioc-decoupler']
0m59.2s INFO: Running scripts post_purge
0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_purge_exceptions']
0m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_purge_exceptions']
0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_purge_manual_cleanup']
0m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_purge_manual_cleanup']
0m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', '--pending']
0m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--purge', '--pending']
0m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--remove', '--pending']
0m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg', '--remove', '--pending']
0m59.3s INFO: Running scripts post_test
0m59.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_test_exceptions']
0m59.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'tmp/scripts/post_test_exceptions']
0m59.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
0m59.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
1m0.1s DEBUG: No broken symlinks as far as we can find.
1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-divert', '--list']
1m0.1s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'dpkg-divert', '--list']
1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'clean']
1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p', 'apt-get', 'clean']
1m0.1s DEBUG: Recording chroot state
1m1.6s INFO: PASS: Installation and purging test.
1m2.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/shm']
1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/shm']
1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/console']
1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/console']
1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/ptmx']
1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/ptmx']
1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/pts']
1m2.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/dev/pts']
1m2.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/proc']
1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p/proc']
1m2.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
1m2.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_gc8_s2p']
1m2.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_gc8_s2p
1m2.4s INFO: PASS: All tests.
1m2.4s INFO: piuparts run ends.
ret=0
End: 2025-04-09 12:43:49 GMT