Start: 2026-08-11 23:19:32 GMT Package: r-bioc-ensembldb Version: 2.36.1+dfsg-1 Installed-Size: 2339 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics (>= 0.15.10), r-bioc-genomicranges (>= 1.61.1), r-bioc-genomicfeatures (>= 1.61.4), r-bioc-annotationfilter (>= 1.5.2), r-cran-rsqlite (>= 1.1), r-cran-dbi, r-bioc-biobase, r-bioc-seqinfo, r-bioc-genomeinfodb (>= 1.45.5), r-bioc-annotationdbi (>= 1.31.19), r-bioc-rtracklayer (>= 1.69.1), r-bioc-s4vectors (>= 0.23.10), r-bioc-rsamtools, r-bioc-iranges (>= 2.13.24), r-bioc-protgenerics, r-bioc-biostrings (>= 2.77.2), r-cran-curl, r-pkg-team-core-architecture, perl:any Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-testthat, r-bioc-ggbio (>= 1.24.0), r-bioc-gviz (>= 1.20.0), r-cran-rmarkdown, r-bioc-annotationhub Description: GNU R utilities to create and use an Ensembl based annotation database Homepage: https://bioconductor.org/packages/ensembldb/ Description-md5: 8193c0347bf158b238c1f1ab9ad7a963 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-ensembldb/r-bioc-ensembldb_2.36.1+dfsg-1_all.deb Size: 1499636 MD5sum: 133250bbe8854e9529bbab42df4b4ca8 SHA256: 0f8943bcad4e9586593ba11c0589da4707514f335ccaeb5fc84dc419572d079f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-ensembldb=2.36.1+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-ensembldb=2.36.1+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-52-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.180-1 (2026-08-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2ps0hi4s 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2ps0hi4s 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2ps0hi4s/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp2ps0hi4s/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'update'] 0m3.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.7 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7704 kB] Fetched 18.6 MB in 2s (9554 kB/s) Reading package lists... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-16-base init-system-helpers libc-bin libc-gconv-modules-extra libc6 libcrypt1 libgcc-s1 libstdc++6 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4654 kB of archives. After this operation, 146 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.69+nmu1 [37.1 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc-gconv-modules-extra amd64 2.43-3 [1097 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.43-3 [1864 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.43-3 [620 kB] Get:5 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16.2.0-1 [38.0 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16.2.0-1 [74.1 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16.2.0-1 [824 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Preconfiguring packages ... Fetched 4654 kB in 0s (67.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69+nmu1_all.deb ... Unpacking init-system-helpers (1.69+nmu1) over (1.69) ... Setting up init-system-helpers (1.69+nmu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-3_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-3) over (2.42-17) ... Setting up libc-gconv-modules-extra:amd64 (2.43-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc6_2.43-3_amd64.deb ... Unpacking libc6:amd64 (2.43-3) over (2.42-17) ... Setting up libc6:amd64 (2.43-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-3_amd64.deb ... Unpacking libc-bin (2.43-3) over (2.42-17) ... Setting up libc-bin (2.43-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../gcc-16-base_16.2.0-1_amd64.deb ... Unpacking gcc-16-base:amd64 (16.2.0-1) over (16.1.0-3) ... Setting up gcc-16-base:amd64 (16.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libgcc-s1_16.2.0-1_amd64.deb ... Unpacking libgcc-s1:amd64 (16.2.0-1) over (16.1.0-3) ... Setting up libgcc-s1:amd64 (16.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libstdc++6_16.2.0-1_amd64.deb ... Unpacking libstdc++6:amd64 (16.2.0-1) over (16.1.0-3) ... Setting up libstdc++6:amd64 (16.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.5.2+20251210-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.5.2+20251210-1) over (1:4.5.1-1+b1) ... Setting up libcrypt1:amd64 (1:4.5.2+20251210-1) ... Processing triggers for libc-bin (2.43-3) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-yf', 'dist-upgrade'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.2s DUMP: ae9b259ed3e631894f2556a6e388ed49 - 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.2s INFO: Running scripts post_setup 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_fake-essential'] 0m9.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69+nmu1). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1879 kB of archives. After this operation, 5273 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.6-3 [69.4 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.6-3 [983 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.26 [599 kB] Preconfiguring packages ... Fetched 1879 kB in 0s (17.9 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4975 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.6-3_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.6-3) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.6-3_amd64.deb ... Unpacking procps (2:4.0.6-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.26_all.deb ... Unpacking dbconfig-common (2.0.26) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.6-3) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.6-3) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.0.26) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.43-3) ... 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_fake-essential'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_forbid_home'] 0m9.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_forbid_home'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_minimize'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_minimize'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_zz_backports'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_setup_zz_backports'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'clean'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'clean'] 0m9.1s DEBUG: Recording chroot state 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.5s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-3 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-3 install ok installed libc6:amd64 libc6 2.43-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.6-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.2-3 install ok installed procps procps 2:4.0.6-3 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.2-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-divert', '--list'] 0m9.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-divert', '--list'] 0m9.5s INFO: Running scripts is_testable 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s INFO: apt-cache does not know about any of the requested packages 0m9.5s INFO: Running scripts pre_test 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_test_root_password'] 0m9.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_test_root_password'] 0m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 0m10.2s DEBUG: No broken symlinks as far as we can find. 0m10.2s INFO: Running scripts pre_install 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_extras'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_extras'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m11.4s DUMP: Package: r-bioc-ensembldb Version: 2.36.1+dfsg-1 Installed-Size: 2339 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics (>= 0.15.10), r-bioc-genomicranges (>= 1.61.1), r-bioc-genomicfeatures (>= 1.61.4), r-bioc-annotationfilter (>= 1.5.2), r-cran-rsqlite (>= 1.1), r-cran-dbi, r-bioc-biobase, r-bioc-seqinfo, r-bioc-genomeinfodb (>= 1.45.5), r-bioc-annotationdbi (>= 1.31.19), r-bioc-rtracklayer (>= 1.69.1), r-bioc-s4vectors (>= 0.23.10), r-bioc-rsamtools, r-bioc-iranges (>= 2.13.24), r-bioc-protgenerics, r-bioc-biostrings (>= 2.77.2), r-cran-curl, r-pkg-team-core-architecture, perl:any Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-testthat, r-bioc-ggbio (>= 1.24.0), r-bioc-gviz (>= 1.20.0), r-cran-rmarkdown, r-bioc-annotationhub Description-en: GNU R utilities to create and use an Ensembl based annotation database The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve all gene/transcript models and annotations from the database, the ensembldb package provides also a filter framework allowing to retrieve annotations for specific entries like genes encoded on a chromosome region or transcript models of lincRNA genes. Description-md5: 8193c0347bf158b238c1f1ab9ad7a963 Homepage: https://bioconductor.org/packages/ensembldb/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-ensembldb/r-bioc-ensembldb_2.36.1+dfsg-1_all.deb Size: 1499636 MD5sum: 133250bbe8854e9529bbab42df4b4ca8 SHA256: 0f8943bcad4e9586593ba11c0589da4707514f335ccaeb5fc84dc419572d079f 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m11.4s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics (>= 0.15.10), r-bioc-genomicranges (>= 1.61.1), r-bioc-genomicfeatures (>= 1.61.4), r-bioc-annotationfilter (>= 1.5.2), r-cran-rsqlite (>= 1.1), r-cran-dbi, r-bioc-biobase, r-bioc-seqinfo, r-bioc-genomeinfodb (>= 1.45.5), r-bioc-annotationdbi (>= 1.31.19), r-bioc-rtracklayer (>= 1.69.1), r-bioc-s4vectors (>= 0.23.10), r-bioc-rsamtools, r-bioc-iranges (>= 2.13.24), r-bioc-protgenerics, r-bioc-biostrings (>= 2.77.2), r-cran-curl, r-pkg-team-core-architecture, perl:any Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m11.4s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpx0d1etbk/piuparts-depends-dummy'] 0m11.4s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpx0d1etbk/piuparts-depends-dummy.deb'. 0m11.4s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpx0d1etbk/piuparts-depends-dummy'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.4s DUMP: 3.3.2 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.4s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpx0d1etbk/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp2ps0hi4s/tmp 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m37.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15-base libasan8 libatomic1 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-15-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu78 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-15-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev openssl perl perl-modules-5.42 r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-png r-cran-r6 r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-yaml r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils zip Suggested packages: libboost-doc libboost1.90-doc libboost-atomic1.90-dev libboost-chrono1.90-dev libboost-container1.90-dev libboost-context1.90-dev libboost-contract1.90-dev libboost-coroutine1.90-dev libboost-date-time1.90-dev libboost-exception1.90-dev libboost-fiber1.90-dev libboost-filesystem1.90-dev libboost-graph-parallel1.90-dev libboost-graph1.90-dev libboost-iostreams1.90-dev libboost-json1.90-dev libboost-locale1.90-dev libboost-log1.90-dev libboost-math1.90-dev libboost-mpi-python1.90-dev libboost-mpi1.90-dev libboost-nowide1.90-dev libboost-numpy1.90-dev libboost-program-options1.90-dev libboost-python1.90-dev libboost-random1.90-dev libboost-regex1.90-dev libboost-serialization1.90-dev libboost-stacktrace1.90-dev libboost-test1.90-dev libboost-thread1.90-dev libboost-timer1.90-dev libboost-type-erasure1.90-dev libboost-url1.90-dev libboost-wave1.90-dev libboost1.90-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev gdbm-l10n low-memory-monitor krb5-doc krb5-user libstdc++-15-doc tcl8.6 tk8.6 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr r-cran-testthat r-cran-rmarkdown r-bioc-shortread r-bioc-bsgenome r-bioc-deseq2 r-bioc-edger r-bioc-txdbmaker r-bioc-ensembldb r-cran-markdown r-bioc-genefilter r-bioc-limma r-cran-rmysql r-cran-rmpi r-cran-rlecuyer readline-doc Recommended packages: manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libldap-common publicsuffix libsasl2-modules netbase r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15-base libasan8 libatomic1 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-15-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu78 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-15-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev openssl perl perl-modules-5.42 piuparts-depends-dummy r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-png r-cran-r6 r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-yaml r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils zip 0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded. Need to get 171 MB/171 MB of archives. After this operation, 589 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [842 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.3-1 [127 kB] Get:3 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.3-1 [1522 kB] Get:5 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260601 [134 kB] Get:6 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.2-3 [3210 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.2-3 [4245 kB] Get:10 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.2-3 [265 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:14 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:15 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:16 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:18 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:19 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.3.0-2 [37.7 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16.2.0-1 [2889 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16.2.0-1 [10.4 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-1 [151 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16.2.0-1 [27.0 kB] Get:25 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16.2.0-1 [1280 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16.2.0-1 [2573 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16.2.0-1 [1136 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16.2.0-1 [1580 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16.2.0-1 [148 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libgcc-15-dev amd64 15.3.0-2 [2717 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.43-3 [38.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 7.1.7-1 [2038 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.43-3 [2067 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libstdc++-15-dev amd64 15.3.0-2 [2784 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libboost1.90-dev amd64 1.90.0-6 [11.3 MB] Get:36 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.90.0.2 [3064 B] Get:37 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:54 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.13+dfsg-1+b1 [189 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.2-1 [61.6 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-5 [245 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.21.0-2 [422 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.7.1-2 [30.5 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-1 [878 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.88.3-2 [1536 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:74 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:77 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:79 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:80 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.58.0-1 [225 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.58.0-1 [53.1 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.58.0-1 [34.2 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:101 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-16 [239 kB] Get:102 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-31 [176 kB] Get:103 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:104 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.1-4 [28.4 MB] Get:105 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:106 http://deb.debian.org/debian sid/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:107 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.58.1-1 [649 kB] Get:108 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.72.0-1 [2320 kB] Get:109 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.50.1+dfsg-1 [1849 kB] Get:110 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.46.0-1 [2336 kB] Get:111 http://deb.debian.org/debian sid/main amd64 r-cran-dbi all 1.3.0-1 [871 kB] Get:112 http://deb.debian.org/debian sid/main amd64 r-cran-bit amd64 4.6.0+dfsg-3 [452 kB] Get:113 http://deb.debian.org/debian sid/main amd64 r-cran-bit64 amd64 4.8.2-1 [585 kB] Get:114 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:115 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:116 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:117 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:118 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Get:119 http://deb.debian.org/debian sid/main amd64 r-cran-blob all 1.3.0-1 [54.1 kB] Get:120 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-3 [79.8 kB] Get:121 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-3 [79.6 kB] Get:122 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:123 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-3 [21.7 kB] Get:124 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.5-1 [236 kB] Get:125 http://deb.debian.org/debian sid/main amd64 r-cran-rsqlite amd64 2.4.6-1 [1236 kB] Get:126 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 7.1.0+dfsg-2 [203 kB] Get:127 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-2 [447 kB] Get:128 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.13-2 [47.5 kB] Get:129 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.3-3 [44.4 kB] Get:130 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.1-3 [24.5 kB] Get:131 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.4.2+dfsg-1 [402 kB] Get:132 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:133 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.8+dfsg-1 [471 kB] Get:134 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-9-1 [42.9 kB] Get:135 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.52.0-1 [629 kB] Get:136 http://deb.debian.org/debian sid/main amd64 r-bioc-seqinfo all 1.2.0+dfsg-1 [390 kB] Get:137 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-2 [164 kB] Get:138 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.80.1+dfsg-1 [13.3 MB] Get:139 http://deb.debian.org/debian sid/main amd64 r-bioc-keggrest all 1.52.2+dfsg-1 [189 kB] Get:140 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationdbi all 1.74.0-1 [4484 kB] Get:141 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges all 1.64.0+dfsg-1 [2087 kB] Get:142 http://deb.debian.org/debian sid/main amd64 r-cran-lazyeval amd64 0.2.3-1 [170 kB] Get:143 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationfilter all 1.36.0+dfsg-1 [246 kB] Get:144 http://deb.debian.org/debian sid/main amd64 r-bioc-biocio all 1.22.0+dfsg-1 [213 kB] Get:145 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-3 [152 kB] Get:146 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-3 [119 kB] Get:147 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-4 [20.6 kB] Get:148 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.9-2 [121 kB] Get:149 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:150 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:151 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.90.0-1 [6220 B] Get:152 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.46.0-1 [971 kB] Get:153 http://deb.debian.org/debian sid/main amd64 r-bioc-cigarillo amd64 1.2.1+dfsg-1 [141 kB] Get:154 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-9-1 [1450 kB] Get:155 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:156 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-3 [503 kB] Get:157 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.24.0-1 [444 kB] Get:158 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:159 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.12.0+dfsg-1 [822 kB] Get:160 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.12.2+dfsg-1 [1407 kB] Get:161 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray all 0.38.2+dfsg-1 [1999 kB] Get:162 http://deb.debian.org/debian sid/main amd64 r-bioc-ucsc.utils all 1.8.0+dfsg-1 [78.7 kB] Get:163 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodb all 1.48.0+dfsg-1 [3545 kB] Get:164 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.42.0+dfsg-1 [1119 kB] Get:165 http://deb.debian.org/debian sid/main amd64 r-cran-bitops amd64 1.1-0-1 [31.0 kB] Get:166 http://deb.debian.org/debian sid/main amd64 r-bioc-rhtslib amd64 3.8.0+dfsg-1 [1344 kB] Get:167 http://deb.debian.org/debian sid/main amd64 r-bioc-rsamtools amd64 2.28.0+dfsg-1+b1 [2625 kB] Get:168 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicalignments amd64 1.48.0-1 [2132 kB] Get:169 http://deb.debian.org/debian sid/main amd64 r-cran-xml amd64 3.99-0.23-1 [1754 kB] Get:170 http://deb.debian.org/debian sid/main amd64 r-cran-rcurl amd64 1.98-1.19+dfsg-1 [801 kB] Get:171 http://deb.debian.org/debian sid/main amd64 r-cran-rjson amd64 0.2.23-1+b1 [101 kB] Get:172 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.12-2 [120 kB] Get:173 http://deb.debian.org/debian sid/main amd64 r-cran-restfulr amd64 0.0.17-1 [392 kB] Get:174 http://deb.debian.org/debian sid/main amd64 r-bioc-rtracklayer amd64 1.72.0+ds-1 [5181 kB] Get:175 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicfeatures all 1.64.0+dfsg-1 [934 kB] Get:176 http://deb.debian.org/debian sid/main amd64 r-bioc-protgenerics all 1.44.0-1 [249 kB] Preconfiguring 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1+b2_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../088-libsm6_2%3a1.2.6-1+b2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1+b2) ... Selecting previously unselected package libtcl8.6:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.7+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../094-libxft2_2.3.6-1+b5_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b5) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../095-libxss1_1%3a1.2.3-1+b4_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b4) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../096-libtk8.6_8.6.18-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.18-1) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../097-libxml2-16_2.15.3+dfsg-1_amd64.deb ... Unpacking libxml2-16:amd64 (2.15.3+dfsg-1) ... 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Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libpango-1.0-0:amd64 (1.58.0-1) ... Setting up libpsl5t64:amd64 (0.23.2-1) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up libstdc++-15-dev:amd64 (15.3.0-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up libboost1.90-dev:amd64 (1.90.0-6) ... Setting up libboost-dev:amd64 (1.90.0.2) ... Setting up libpangoft2-1.0-0:amd64 (1.58.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.0-1) ... Setting up libcurl4t64:amd64 (8.21.0-2) ... Setting up r-base-core (4.6.1-4) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-2) ... Setting up r-cran-futile.options (1.0.1-4) ... Setting up r-cran-lattice (0.22-9-1) ... Setting up r-cran-formatr (1.14-3) ... Setting up r-cran-xml (3.99-0.23-1) ... Setting up r-cran-rjson (0.2.23-1+b1) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up r-cran-bh (1.90.0-1) ... Setting up r-cran-curl (7.1.0+dfsg-2) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-rlang (1.3.0-1) ... Setting up r-cran-matrixstats (1.5.0-3) ... Setting up r-cran-sys (3.4.3-3) ... Setting up r-cran-mime (0.13-2) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-yaml (2.3.12-2) ... Setting up r-cran-lambda.r (1.2.4-3) ... Setting up r-cran-dbi (1.3.0-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-bit (4.6.0+dfsg-3) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-bitops (1.1-0-1) ... Setting up r-cran-bit64 (4.8.2-1) ... Setting up r-cran-askpass (1.2.1-3) ... Setting up r-cran-fastmap (1.2.0-3) ... Setting up r-cran-png (0.1-9-1) ... Setting up r-cran-jsonlite (2.0.0+dfsg-2) ... Setting up r-cran-pkgconfig (2.0.3-3) ... Setting up r-cran-cpp11 (0.5.5-1) ... Setting up r-cran-futile.logger (1.4.9-2) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up r-cran-cachem (1.1.0-3) ... Setting up r-cran-lazyeval (0.2.3-1) ... Setting up r-cran-rcurl (1.98-1.19+dfsg-1) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up r-cran-openssl (2.4.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.58.1-1) ... Setting up r-bioc-biocparallel (1.46.0-1) ... Setting up r-bioc-matrixgenerics (1.24.0-1) ... Setting up r-bioc-rhtslib (3.8.0+dfsg-1) ... Setting up r-bioc-protgenerics (1.44.0-1) ... Setting up r-bioc-biobase (2.72.0-1) ... Setting up r-cran-httr (1.4.8+dfsg-1) ... Setting up r-bioc-s4vectors (0.50.1+dfsg-1) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-blob (1.3.0-1) ... Setting up r-bioc-iranges (2.46.0-1) ... Setting up r-cran-rsqlite (2.4.6-1) ... Setting up r-cran-restfulr (0.0.17-1) ... Setting up r-bioc-s4arrays (1.12.0+dfsg-1) ... Setting up r-bioc-ucsc.utils (1.8.0+dfsg-1) ... Setting up r-bioc-biocio (1.22.0+dfsg-1) ... Setting up r-bioc-seqinfo (1.2.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.48.0+dfsg-1) ... Setting up r-bioc-xvector (0.52.0-1) ... Setting up r-bioc-sparsearray (1.12.2+dfsg-1) ... Setting up r-bioc-genomicranges (1.64.0+dfsg-1) ... Setting up r-bioc-biostrings (2.80.1+dfsg-1) ... Setting up r-bioc-annotationfilter (1.36.0+dfsg-1) ... Setting up r-bioc-rsamtools (2.28.0+dfsg-1+b1) ... Setting up r-bioc-cigarillo (1.2.1+dfsg-1) ... Setting up r-bioc-delayedarray (0.38.2+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Setting up r-bioc-keggrest (1.52.2+dfsg-1) ... Setting up r-bioc-annotationdbi (1.74.0-1) ... Setting up r-bioc-genomicalignments (1.48.0-1) ... Setting up r-bioc-rtracklayer (1.72.0+ds-1) ... Setting up r-bioc-genomicfeatures (1.64.0+dfsg-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-3) ... Processing triggers for ca-certificates (20260601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m37.7s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m37.7s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp2ps0hi4s/./tmp/piuparts-depends-dummy.deb 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m37.8s DUMP: piuparts-depends-dummy install ok installed 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m37.8s DUMP: (Reading database ... 38387 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'clean'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'clean'] 0m37.8s DEBUG: Recording chroot state 0m38.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 0m40.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 0m42.3s DEBUG: No broken symlinks as far as we can find. 0m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy'] 0m43.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m43.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy'] 0m43.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy', 'r-bioc-ensembldb'] 0m43.5s DUMP: r-bioc-ensembldb: Installed: (none) Candidate: 2.36.1+dfsg-1 Version table: 2.36.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy', 'r-bioc-ensembldb'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', 'install', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m44.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: r-bioc-biocstyle r-cran-knitr r-cran-testthat r-bioc-ggbio r-bioc-gviz r-cran-rmarkdown r-bioc-annotationhub The following NEW packages will be installed: r-bioc-ensembldb 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1500 kB of archives. After this operation, 2395 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-ensembldb all 2.36.1+dfsg-1 [1500 kB] Fetched 1500 kB in 0s (28.8 MB/s) Selecting previously unselected package r-bioc-ensembldb. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38387 files and directories currently installed.) Preparing to unpack .../r-bioc-ensembldb_2.36.1+dfsg-1_all.deb ... Unpacking r-bioc-ensembldb (2.36.1+dfsg-1) ... Setting up r-bioc-ensembldb (2.36.1+dfsg-1) ... 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', 'install', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m44.8s INFO: Running scripts post_install 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_install_exceptions'] 0m44.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_install_exceptions'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'systemd-tmpfiles', '--cat-config'] 0m44.8s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m44.8s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'systemd-tmpfiles', '--cat-config'] 0m44.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'remove', 'r-bioc-ensembldb'] 0m46.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15-base libasan8 libatomic1 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-15-dev libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu78 libitm1 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-15-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-png r-cran-r6 r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-yaml r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils zip Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: r-bioc-ensembldb 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 2395 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38464 files and directories currently installed.) Removing r-bioc-ensembldb (2.36.1+dfsg-1) ... 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'remove', 'r-bioc-ensembldb'] 0m46.1s INFO: Reinstalling after remove 0m46.1s INFO: Running scripts pre_install 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_database-server'] 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_database-server'] 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_exceptions'] 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_exceptions'] 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_extras'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_extras'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy'] 0m46.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy', 'r-bioc-ensembldb'] 0m46.3s DUMP: r-bioc-ensembldb: Installed: (none) Candidate: 2.36.1+dfsg-1 Version table: 2.36.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy', 'r-bioc-ensembldb'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', 'install', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m47.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: r-bioc-biocstyle r-cran-knitr r-cran-testthat r-bioc-ggbio r-bioc-gviz r-cran-rmarkdown r-bioc-annotationhub The following NEW packages will be installed: r-bioc-ensembldb 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1500 kB of archives. After this operation, 2395 kB of additional disk space will be used. Selecting previously unselected package r-bioc-ensembldb. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38387 files and directories currently installed.) Preparing to unpack .../r-bioc-ensembldb_2.36.1+dfsg-1_all.deb ... Unpacking r-bioc-ensembldb (2.36.1+dfsg-1) ... Setting up r-bioc-ensembldb (2.36.1+dfsg-1) ... 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', 'install', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m47.6s INFO: Running scripts post_install 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_install_exceptions'] 0m47.6s INFO: Running scripts pre_install 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_database-server'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_database-server'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_exceptions'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_extras'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_extras'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy'] 0m47.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy', 'r-bioc-ensembldb'] 0m47.7s DUMP: r-bioc-ensembldb: Installed: 2.36.1+dfsg-1 Candidate: 2.36.1+dfsg-1 Version table: *** 2.36.1+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m47.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-cache', 'policy', 'r-bioc-ensembldb'] 0m47.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m49.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/1500 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38464 files and directories currently installed.) Preparing to unpack .../r-bioc-ensembldb_2.36.1+dfsg-1_all.deb ... Unpacking r-bioc-ensembldb (2.36.1+dfsg-1) over (2.36.1+dfsg-1) ... Setting up r-bioc-ensembldb (2.36.1+dfsg-1) ... 0m49.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-ensembldb=2.36.1+dfsg-1'] 0m49.0s INFO: Running scripts post_install 0m49.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_install_exceptions'] 0m49.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_install_exceptions'] 0m49.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 0m50.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 0m54.3s DEBUG: No broken symlinks as far as we can find. 0m56.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', '-ac', '--ignore-obsolete'] 1m2.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', '-ac', '--ignore-obsolete'] 1m2.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m2.1s DUMP: 0.15.9~deb12u1 1m2.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m2.1s INFO: Running adequate version 0.15.9~deb12u1 now. 1m2.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'r-bioc-ensembldb'] 1m2.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'r-bioc-ensembldb'] 1m2.2s INFO: Running scripts pre_remove 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_exceptions'] 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_exceptions'] 1m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m6.1s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed ca-certificates ca-certificates 20260601 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed gcc-15-base:amd64 gcc-15-base 15.3.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libasan8:amd64 libasan8 16.2.0-1 install ok installed libatomic1:amd64 libatomic1 16.2.0-1 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libboost-dev:amd64 libboost-dev 1.90.0.2 install ok installed libboost1.90-dev:amd64 libboost1.90-dev 1.90.0-6 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-3 install ok installed libc-dev-bin libc-dev-bin 2.43-3 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-3 install ok installed libc6:amd64 libc6 2.43-3 install ok installed libc6-dev:amd64 libc6-dev 2.43-3 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.21.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libexpat1:amd64 libexpat1 2.8.3-1 install ok installed libffi8:amd64 libffi8 3.7.1-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgcc-15-dev:amd64 libgcc-15-dev 15.3.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.88.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhwasan0:amd64 libhwasan0 16.2.0-1 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libitm1:amd64 libitm1 16.2.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed libldap2:amd64 libldap2 2.6.13+dfsg-1+b1 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed liblsan0:amd64 liblsan0 16.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.0-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.0-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.0-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.4 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libperl5.42:amd64 libperl5.42 5.42.2-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.58-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.6-3 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.2-1 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b2 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-5 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++-15-dev:amd64 libstdc++-15-dev 15.3.0-2 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.18+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtsan2:amd64 libtsan2 16.2.0-1 install ok installed libubsan1:amd64 libubsan1 16.2.0-1 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2-16:amd64 libxml2-16 2.15.3+dfsg-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.1.7-1 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl openssl 3.6.3-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl perl 5.42.2-3 install ok installed perl-base perl-base 5.42.2-3 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.2-3 install ok installed procps procps 2:4.0.6-3 install ok installed r-base-core r-base-core 4.6.1-4 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.74.0-1 install ok installed r-bioc-annotationfilter r-bioc-annotationfilter 1.36.0+dfsg-1 install ok installed r-bioc-biobase r-bioc-biobase 2.72.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-1 install ok installed r-bioc-biocio r-bioc-biocio 1.22.0+dfsg-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.46.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.80.1+dfsg-1 install ok installed r-bioc-cigarillo r-bioc-cigarillo 1.2.1+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.38.2+dfsg-1 install ok installed r-bioc-ensembldb r-bioc-ensembldb 2.36.1+dfsg-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.48.0+dfsg-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.48.0-1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.64.0+dfsg-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.64.0+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.46.0-1 install ok installed r-bioc-keggrest r-bioc-keggrest 1.52.2+dfsg-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.24.0-1 install ok installed r-bioc-protgenerics r-bioc-protgenerics 1.44.0-1 install ok installed r-bioc-rhtslib r-bioc-rhtslib 3.8.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.28.0+dfsg-1+b1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.72.0+ds-1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.12.0+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.50.1+dfsg-1 install ok installed r-bioc-seqinfo r-bioc-seqinfo 1.2.0+dfsg-1 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.12.2+dfsg-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.42.0+dfsg-1 install ok installed r-bioc-ucsc.utils r-bioc-ucsc.utils 1.8.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.52.0-1 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-3 install ok installed r-cran-bh r-cran-bh 1.90.0-1 install ok installed r-cran-bit r-cran-bit 4.6.0+dfsg-3 install ok installed r-cran-bit64 r-cran-bit64 4.8.2-1 install ok installed r-cran-bitops r-cran-bitops 1.1-0-1 install ok installed r-cran-blob r-cran-blob 1.3.0-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-3 install ok installed r-cran-cli r-cran-cli 3.6.6-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.5-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-2 install ok installed r-cran-curl r-cran-curl 7.1.0+dfsg-2 install ok installed r-cran-dbi r-cran-dbi 1.3.0-1 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-3 install ok installed r-cran-formatr r-cran-formatr 1.14-3 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.9-2 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-4 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-glue r-cran-glue 1.8.1-2 install ok installed r-cran-httr r-cran-httr 1.4.8+dfsg-1 install ok installed r-cran-jsonlite r-cran-jsonlite 2.0.0+dfsg-2 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-3 install ok installed r-cran-lattice r-cran-lattice 0.22-9-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.3-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-matrix r-cran-matrix 1.7-6-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-3 install ok installed r-cran-memoise r-cran-memoise 2.0.1-2 install ok installed r-cran-mime r-cran-mime 0.13-2 install ok installed r-cran-openssl r-cran-openssl 2.4.2+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-3 install ok installed r-cran-png r-cran-png 0.1-9-1 install ok installed r-cran-r6 r-cran-r6 2.6.1-2 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.19+dfsg-1 install ok installed r-cran-restfulr r-cran-restfulr 0.0.17-1 install ok installed r-cran-rjson r-cran-rjson 0.2.23-1+b1 install ok installed r-cran-rlang r-cran-rlang 1.3.0-1 install ok installed r-cran-rsqlite r-cran-rsqlite 2.4.6-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sys r-cran-sys 3.4.3-3 install ok installed r-cran-vctrs r-cran-vctrs 0.7.3-2 install ok installed r-cran-xml r-cran-xml 3.99-0.23-1 install ok installed r-cran-yaml r-cran-yaml 2.3.12-2 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed unzip unzip 6.0-31 install ok installed util-linux util-linux 2.42.2-2 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gcc-15-base:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pkgconfig', 'r-cran-png', 'r-cran-r6', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-snow', 'r-cran-sys', 'r-cran-vctrs', 'r-cran-xml', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-ensembldb'] 1m10.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15-base libasan8 libatomic1 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-15-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhwasan0 libice6 libicu78 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-15-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev openssl perl perl-modules-5.42 r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-png r-cran-r6 r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-yaml r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 176 to remove and 0 not upgraded. After this operation, 591 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38464 files and directories currently installed.) Removing r-bioc-ensembldb (2.36.1+dfsg-1) ... Removing r-bioc-genomicfeatures (1.64.0+dfsg-1) ... Removing r-bioc-rtracklayer (1.72.0+ds-1) ... Removing r-bioc-genomicalignments (1.48.0-1) ... Removing r-bioc-rsamtools (2.28.0+dfsg-1+b1) ... Removing r-bioc-biocparallel (1.46.0-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Removing r-bioc-delayedarray (0.38.2+dfsg-1) ... Removing r-bioc-sparsearray (1.12.2+dfsg-1) ... Removing r-bioc-s4arrays (1.12.0+dfsg-1) ... Removing r-cran-abind (1.4-8-1) ... Removing r-cran-matrix (1.7-6-1) ... Removing r-cran-restfulr (0.0.17-1) ... Removing r-cran-yaml (2.3.12-2) ... Removing r-cran-bh (1.90.0-1) ... Removing libboost-dev:amd64 (1.90.0.2) ... Removing libboost1.90-dev:amd64 (1.90.0-6) ... Removing libstdc++-15-dev:amd64 (15.3.0-2) ... Removing libgcc-15-dev:amd64 (15.3.0-2) ... Removing gcc-15-base:amd64 (15.3.0-2) ... Removing libasan8:amd64 (16.2.0-1) ... Removing r-cran-rcurl (1.98-1.19+dfsg-1) ... Removing libc6-dev:amd64 (2.43-3) ... Removing libc-dev-bin (2.43-3) ... Removing perl (5.42.2-3) ... Removing libperl5.42:amd64 (5.42.2-3) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing r-bioc-annotationdbi (1.74.0-1) ... Removing r-bioc-keggrest (1.52.2+dfsg-1) ... Removing r-bioc-cigarillo (1.2.1+dfsg-1) ... Removing r-bioc-biostrings (2.80.1+dfsg-1) ... Removing r-bioc-xvector (0.52.0-1) ... Removing r-bioc-annotationfilter (1.36.0+dfsg-1) ... Removing r-bioc-genomicranges (1.64.0+dfsg-1) ... Removing libhwasan0:amd64 (16.2.0-1) ... Removing libitm1:amd64 (16.2.0-1) ... Removing liblsan0:amd64 (16.2.0-1) ... Removing r-cran-png (0.1-9-1) ... Removing libquadmath0:amd64 (16.2.0-1) ... Removing libtsan2:amd64 (16.2.0-1) ... Removing libubsan1:amd64 (16.2.0-1) ... Removing r-cran-xml (3.99-0.23-1) ... Removing libxml2-16:amd64 (2.15.3+dfsg-1) ... Removing linux-libc-dev (7.1.7-1) ... Removing perl-modules-5.42 (5.42.2-3) ... Removing r-bioc-biobase (2.72.0-1) ... Removing r-bioc-genomeinfodb (1.48.0+dfsg-1) ... Removing r-bioc-ucsc.utils (1.8.0+dfsg-1) ... Removing r-bioc-biocio (1.22.0+dfsg-1) ... Removing r-bioc-rhtslib (3.8.0+dfsg-1) ... Removing r-bioc-matrixgenerics (1.24.0-1) ... Removing r-bioc-protgenerics (1.44.0-1) ... Removing r-cran-httr (1.4.8+dfsg-1) ... Removing r-cran-openssl (2.4.2+dfsg-1) ... Removing r-cran-askpass (1.2.1-3) ... Removing r-cran-rsqlite (2.4.6-1) ... Removing r-cran-bit64 (4.8.2-1) ... Removing r-cran-bit (4.6.0+dfsg-3) ... Removing r-cran-bitops (1.1-0-1) ... Removing r-cran-blob (1.3.0-1) ... Removing r-cran-memoise (2.0.1-2) ... Removing r-cran-cachem (1.1.0-3) ... Removing r-cran-vctrs (0.7.3-2) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-cli (3.6.6-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-cpp11 (0.5.5-1) ... Removing r-cran-crayon (1.5.3-2) ... Removing r-cran-curl (7.1.0+dfsg-2) ... Removing r-cran-dbi (1.3.0-1) ... Removing r-cran-fastmap (1.2.0-3) ... Removing r-cran-futile.logger (1.4.9-2) ... Removing r-cran-lambda.r (1.2.4-3) ... Removing r-cran-formatr (1.14-3) ... Removing r-cran-futile.options (1.0.1-4) ... Removing r-cran-glue (1.8.1-2) ... Removing r-cran-jsonlite (2.0.0+dfsg-2) ... Removing r-cran-lattice (0.22-9-1) ... Removing r-cran-lazyeval (0.2.3-1) ... Removing r-cran-matrixstats (1.5.0-3) ... Removing r-cran-mime (0.13-2) ... Removing r-cran-pkgconfig (2.0.3-3) ... Removing r-cran-r6 (2.6.1-2) ... Removing r-cran-rjson (0.2.23-1+b1) ... Removing r-cran-rlang (1.3.0-1) ... Removing r-cran-sys (3.4.3-3) ... Removing r-bioc-seqinfo (1.2.0+dfsg-1) ... Removing r-bioc-iranges (2.46.0-1) ... Removing r-bioc-s4vectors (0.50.1+dfsg-1) ... Removing r-bioc-biocgenerics (0.58.1-1) ... Removing r-cran-generics (0.1.4-1) ... Removing r-pkg-team-core-architecture (20260707) ... Removing r-base-core (4.6.1-4) ... Removing ca-certificates (20260601) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.58.0-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.0-1) ... Removing libpango-1.0-0:amd64 (1.58.0-1) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.88.3-2) ... Removing libatomic1:amd64 (16.2.0-1) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libfreetype6:amd64 (2.14.3+dfsg-2) ... Removing libcurl4t64:amd64 (8.21.0-2) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libexpat1:amd64 (2.8.3-1) ... Removing libffi8:amd64 (3.7.1-2) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing libgfortran5:amd64 (16.2.0-1) ... Removing libgomp1:amd64 (16.2.0-1) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libpsl5t64:amd64 (0.23.2-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.13+dfsg-1+b1) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libpng16-16t64:amd64 (1.6.58-1) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebp7:amd64 (1.5.0-0.1+b2) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Removing libssh2-1t64:amd64 (1.11.1-5) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libthai-data (0.1.30-3) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing openssl (3.6.3-1) ... Removing readline-common (8.3-4) ... Removing unzip (6.0-31) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-16) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Processing triggers for libc-bin (2.43-3) ... 1m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gcc-15-base:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pkgconfig', 'r-cran-png', 'r-cran-r6', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-snow', 'r-cran-sys', 'r-cran-vctrs', 'r-cran-xml', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-ensembldb'] 1m10.0s INFO: Running scripts post_remove 1m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_remove_cleanup'] 1m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_remove_cleanup'] 1m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_remove_exceptions'] 1m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_remove_exceptions'] 1m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gcc-15-base:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pkgconfig', 'r-cran-png', 'r-cran-r6', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-snow', 'r-cran-sys', 'r-cran-vctrs', 'r-cran-xml', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m10.5s DUMP: (Reading database ... 5565 files and directories currently installed.) Purging configuration files for ca-certificates (20260601) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove gcc-15-base which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libboost-dev which is not installed dpkg: warning: ignoring request to remove libboost1.90-dev which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgcc-15-dev which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.88.3-2) ... dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libice6 which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libstdc++-15-dev which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed Purging configuration files for openssl (3.6.3-1) ... Purging configuration files for perl (5.42.2-3) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed Purging configuration files for r-base-core (4.6.1-4) ... dpkg: warning: ignoring request to remove r-bioc-annotationdbi which is not installed dpkg: warning: ignoring request to remove r-bioc-annotationfilter which is not installed dpkg: warning: ignoring request to remove r-bioc-biobase which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocio which is not installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which is not installed dpkg: warning: ignoring request to remove r-bioc-biostrings which is not installed dpkg: warning: ignoring request to remove r-bioc-cigarillo which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which is not installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which is not installed dpkg: warning: ignoring request to remove r-bioc-iranges which is not installed dpkg: warning: ignoring request to remove r-bioc-keggrest which is not installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-protgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which is not installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which is not installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which is not installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which is not installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which is not installed dpkg: warning: ignoring request to remove r-bioc-seqinfo which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which is not installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-ucsc.utils which is not installed dpkg: warning: ignoring request to remove r-bioc-xvector which is not installed dpkg: warning: ignoring request to remove r-cran-abind which is not installed dpkg: warning: ignoring request to remove r-cran-askpass which is not installed dpkg: warning: ignoring request to remove r-cran-bh which is not installed dpkg: warning: ignoring request to remove r-cran-bit which is not installed dpkg: warning: ignoring request to remove r-cran-bit64 which is not installed dpkg: warning: ignoring request to remove r-cran-bitops which is not installed dpkg: warning: ignoring request to remove r-cran-blob which is not installed dpkg: warning: ignoring request to remove r-cran-cachem which is not installed dpkg: warning: ignoring request to remove r-cran-cli which is not installed dpkg: warning: ignoring request to remove r-cran-codetools which is not installed dpkg: warning: ignoring request to remove r-cran-cpp11 which is not installed dpkg: warning: ignoring request to remove r-cran-crayon which is not installed dpkg: warning: ignoring request to remove r-cran-curl which is not installed dpkg: warning: ignoring request to remove r-cran-dbi which is not installed dpkg: warning: ignoring request to remove r-cran-fastmap which is not installed dpkg: warning: ignoring request to remove r-cran-formatr which is not installed dpkg: warning: ignoring request to remove r-cran-futile.logger which is not installed dpkg: warning: ignoring request to remove r-cran-futile.options which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-glue which is not installed dpkg: warning: ignoring request to remove r-cran-httr which is not installed dpkg: warning: ignoring request to remove r-cran-jsonlite which is not installed dpkg: warning: ignoring request to remove r-cran-lambda.r which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-lazyeval which is not installed dpkg: warning: ignoring request to remove r-cran-lifecycle which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-matrixstats which is not installed dpkg: warning: ignoring request to remove r-cran-memoise which is not installed dpkg: warning: ignoring request to remove r-cran-mime which is not installed dpkg: warning: ignoring request to remove r-cran-openssl which is not installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which is not installed dpkg: warning: ignoring request to remove r-cran-png which is not installed dpkg: warning: ignoring request to remove r-cran-r6 which is not installed dpkg: warning: ignoring request to remove r-cran-rcurl which is not installed dpkg: warning: ignoring request to remove r-cran-restfulr which is not installed dpkg: warning: ignoring request to remove r-cran-rjson which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-rsqlite which is not installed dpkg: warning: ignoring request to remove r-cran-snow which is not installed dpkg: warning: ignoring request to remove r-cran-sys which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-cran-xml which is not installed dpkg: warning: ignoring request to remove r-cran-yaml which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed 1m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gcc-15-base:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-15-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'openssl', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pkgconfig', 'r-cran-png', 'r-cran-r6', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-snow', 'r-cran-sys', 'r-cran-vctrs', 'r-cran-xml', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', 'r-bioc-ensembldb'] 1m10.5s DUMP: dpkg: warning: ignoring request to remove r-bioc-ensembldb which is not installed 1m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', 'r-bioc-ensembldb'] 1m10.5s INFO: Running scripts post_purge 1m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_purge_exceptions'] 1m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_purge_exceptions'] 1m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_purge_manual_cleanup'] 1m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_purge_manual_cleanup'] 1m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', '--pending'] 1m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--purge', '--pending'] 1m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--remove', '--pending'] 1m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg', '--remove', '--pending'] 1m10.6s INFO: Running scripts post_test 1m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_test_exceptions'] 1m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'tmp/scripts/post_test_exceptions'] 1m10.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 1m10.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 1m11.2s DEBUG: No broken symlinks as far as we can find. 1m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-divert', '--list'] 1m11.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'dpkg-divert', '--list'] 1m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'clean'] 1m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s', 'apt-get', 'clean'] 1m11.2s DEBUG: Recording chroot state 1m12.9s INFO: PASS: Installation and purging test. 1m13.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/shm'] 1m13.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/shm'] 1m13.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/console'] 1m13.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/console'] 1m13.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/ptmx'] 1m13.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/ptmx'] 1m13.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/pts'] 1m13.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/dev/pts'] 1m13.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/proc'] 1m13.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s/proc'] 1m13.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 1m13.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2ps0hi4s'] 1m13.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2ps0hi4s 1m13.5s INFO: PASS: All tests. 1m13.5s INFO: piuparts run ends. ret=0 End: 2026-08-11 23:20:45 GMT