Start: 2026-09-14 03:56:10 GMT Package: r-bioc-glmgampoi Version: 1.24.0+dfsg-1 Installed-Size: 2138 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.23, r-cran-rcpp, r-bioc-beachmat, r-bioc-delayedmatrixstats, r-cran-matrixstats, r-bioc-matrixgenerics, r-bioc-sparsearray (>= 1.5.21), r-bioc-s4vectors, r-bioc-delayedarray, r-bioc-hdf5array, r-cran-matrix, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-cran-rlang, r-cran-vctrs, r-cran-rcpparmadillo, r-bioc-assorthead, libblas3 | libblas.so.3, libc6 (>= 2.32), libgcc-s1 (>= 3.0), liblapack3 | liblapack.so.3, libstdc++6 (>= 14), r-pkg-team-core-architecture Description: Fit a Gamma-Poisson Generalized Linear Model Homepage: https://bioconductor.org/packages/glmGamPoi/ Description-md5: 682b4a466d61b49db9e1a51ab11b7311 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-glmgampoi/r-bioc-glmgampoi_1.24.0+dfsg-1_amd64.deb Size: 1229204 MD5sum: cd2cddc2d85bbe6e3d63e49a1c899104 SHA256: a9907bcab41313c1cb45b65b7d084b44058b9a5a3fedcf6fdaec0fae536adb79 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-glmgampoi=1.24.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-glmgampoi=1.24.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpezrr9vbg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpezrr9vbg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/15', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/15', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpezrr9vbg/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpezrr9vbg/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'update'] 0m3.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7726 kB] Fetched 18.7 MB in 2s (8345 kB/s) Reading package lists... 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'update'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: liblzma5 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 354 kB of archives. After this operation, 25.6 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.8.4-1 [354 kB] Fetched 354 kB in 0s (3387 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.4-1_amd64.deb ... Unpacking liblzma5:amd64 (5.8.4-1) over (5.8.3-1) ... Setting up liblzma5:amd64 (5.8.4-1) ... Processing triggers for libc-bin (2.43-5) ... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s DUMP: 8f503407ab512ca3103d8a406b0a7eec - 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s INFO: Running scripts post_setup 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_fake-essential'] 0m8.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69+nmu1). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mariadb | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1917 kB of archives. After this operation, 5465 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.1.0 [627 kB] Preconfiguring packages ... Fetched 1917 kB in 0s (10.6 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.1.0_all.deb ... Unpacking dbconfig-common (2.1.0) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.7-1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.7-1) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.1.0) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.43-5) ... 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_fake-essential'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_minimize'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_minimize'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_zz_backports'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_setup_zz_backports'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'clean'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'clean'] 0m8.4s DEBUG: Recording chroot state 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-2 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-5 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-5 install ok installed libc6:amd64 libc6 2.43-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-2 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 262~rc2-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262~rc2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.3-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-divert', '--list'] 0m9.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-divert', '--list'] 0m9.0s INFO: Running scripts is_testable 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/is_testable_uninstallable'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/is_testable_uninstallable'] 0m9.0s INFO: apt-cache does not know about any of the requested packages 0m9.0s INFO: Running scripts pre_test 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_test_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_test_exceptions'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_test_root_password'] 0m9.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_test_root_password'] 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 0m9.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 0m9.7s DEBUG: No broken symlinks as far as we can find. 0m9.7s INFO: Running scripts pre_install 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_database-server'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_database-server'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_extras'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m10.8s DUMP: Package: r-bioc-glmgampoi Version: 1.24.0+dfsg-1 Installed-Size: 2138 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.23, r-cran-rcpp, r-bioc-beachmat, r-bioc-delayedmatrixstats, r-cran-matrixstats, r-bioc-matrixgenerics, r-bioc-sparsearray (>= 1.5.21), r-bioc-s4vectors, r-bioc-delayedarray, r-bioc-hdf5array, r-cran-matrix, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-cran-rlang, r-cran-vctrs, r-cran-rcpparmadillo, r-bioc-assorthead, libblas3 | libblas.so.3, libc6 (>= 2.32), libgcc-s1 (>= 3.0), liblapack3 | liblapack.so.3, libstdc++6 (>= 14), r-pkg-team-core-architecture Description-en: Fit a Gamma-Poisson Generalized Linear Model Fit linear models to overdispersed count data. The package can estimate the overdispersion and fit repeated models for matrix input. It is designed to handle large input datasets as they typically occur in single cell RNA-seq experiments. Description-md5: 682b4a466d61b49db9e1a51ab11b7311 Homepage: https://bioconductor.org/packages/glmGamPoi/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-glmgampoi/r-bioc-glmgampoi_1.24.0+dfsg-1_amd64.deb Size: 1229204 MD5sum: cd2cddc2d85bbe6e3d63e49a1c899104 SHA256: a9907bcab41313c1cb45b65b7d084b44058b9a5a3fedcf6fdaec0fae536adb79 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m10.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: r-api-4.0, r-api-bioc-3.23, r-cran-rcpp, r-bioc-beachmat, r-bioc-delayedmatrixstats, r-cran-matrixstats, r-bioc-matrixgenerics, r-bioc-sparsearray (>= 1.5.21), r-bioc-s4vectors, r-bioc-delayedarray, r-bioc-hdf5array, r-cran-matrix, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-cran-rlang, r-cran-vctrs, r-cran-rcpparmadillo, r-bioc-assorthead, libblas3 | libblas.so.3, libc6 (>= 2.32), libgcc-s1 (>= 3.0), liblapack3 | liblapack.so.3, libstdc++6 (>= 14), r-pkg-team-core-architecture Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m10.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp91no4qzc/piuparts-depends-dummy'] 0m10.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp91no4qzc/piuparts-depends-dummy.deb'. 0m10.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp91no4qzc/piuparts-depends-dummy'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.8s DUMP: 3.3.3 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp91no4qzc/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpezrr9vbg/tmp 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m38.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdeflate0 libdpkg-perl liberror-perl libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhnswlib-dev libhwasan0 libice6 libicu78 libidn2-0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libmpc3 libmpfr6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librhash1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1t64 libstdc++-16-dev libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev make openssl patch perl perl-modules-5.42 r-base-core r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocmake r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-cli r-cran-filelock r-cran-generics r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-pkgkitten r-cran-rcpp r-cran-rcpparmadillo r-cran-rlang r-cran-vctrs r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils xz-utils zip Suggested packages: binutils-doc gprofng-gui binutils-gold bzip2-doc cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-16-locales cpp-16-doc debian-keyring debian-tag2upload-keyring g++-multilib g++-16-multilib gcc-16-doc gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu gettext-base git-doc git-email git-gui gitk gitweb git-cvs git-svn lrzip libc-devtools glibc-doc sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg bzr gdbm-l10n low-memory-monitor gnutls-bin krb5-doc krb5-user libstdc++-16-doc tcl8.6 tk8.6 make-doc ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-knitr r-cran-rmarkdown r-bioc-biocstyle r-cran-testthat r-cran-microbenchmark r-cran-profmem r-bioc-scrnaseq r-cran-rtsne r-cran-getopt r-cran-inline readline-doc Recommended packages: fakeroot sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg libalgorithm-merge-perl less ssh-client manpages manpages-dev libfile-fcntllock-perl liblocale-gettext-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libldap-common publicsuffix libsasl2-modules netbase r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdeflate0 libdpkg-perl liberror-perl libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhnswlib-dev libhwasan0 libice6 libicu78 libidn2-0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libmpc3 libmpfr6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librhash1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1t64 libstdc++-16-dev libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev make openssl patch perl perl-modules-5.42 piuparts-depends-dummy r-base-core r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocmake r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-cli r-cran-filelock r-cran-generics r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-pkgkitten r-cran-rcpp r-cran-rcpparmadillo r-cran-rlang r-cran-vctrs r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils xz-utils zip 0 upgraded, 189 newly installed, 0 to remove and 0 not upgraded. Need to get 428 MB/428 MB of archives. After this operation, 1400 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [858 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.4-1 [130 kB] Get:3 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:5 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.4-1 [1546 kB] Get:6 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260816 [134 kB] Get:7 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:11 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.3-1 [266 kB] Get:12 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.4-1 [761 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libsframe3 amd64 2.47-6 [86.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.47-6 [2686 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.47-6 [562 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.47-6 [846 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.47-6 [166 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.47-6 [98.2 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:20 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.47-6 [1132 kB] Get:21 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.47-6 [288 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.43-5 [39.3 kB] Get:23 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 7.1.13-1 [2064 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.43-5 [2069 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:28 http://deb.debian.org/debian sid/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-2 [76.0 MB] Get:29 http://deb.debian.org/debian sid/main amd64 cpp-16 amd64 16.2.0-2 [1272 B] Get:30 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:31 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:32 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 16.2.0-2 [46.1 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-2 [151 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16.2.0-2 [27.0 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16.2.0-2 [10.4 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16.2.0-2 [2889 kB] Get:37 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16.2.0-2 [1281 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16.2.0-2 [2574 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16.2.0-2 [1136 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16.2.0-2 [1580 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16.2.0-2 [147 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libgcc-16-dev amd64 16.2.0-2 [2782 kB] Get:43 http://deb.debian.org/debian sid/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-2 [87.1 MB] Get:44 http://deb.debian.org/debian sid/main amd64 gcc-16 amd64 16.2.0-2 [535 kB] Get:45 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:46 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:47 http://deb.debian.org/debian sid/main amd64 libstdc++-16-dev amd64 16.2.0-2 [2754 kB] Get:48 http://deb.debian.org/debian sid/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-2 [82.0 MB] Get:49 http://deb.debian.org/debian sid/main amd64 g++-16 amd64 16.2.0-2 [35.2 kB] Get:50 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:51 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:52 http://deb.debian.org/debian sid/main amd64 make amd64 4.4.1-3 [463 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.23.11 [650 kB] Get:54 http://deb.debian.org/debian sid/main amd64 patch amd64 2.8-2 [134 kB] Get:55 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.23.11 [1005 kB] Get:56 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B] Get:57 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libarchive13t64 amd64 3.8.9-1 [364 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:66 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libjsoncpp26 amd64 1.9.8-2 [87.5 kB] Get:79 http://deb.debian.org/debian sid/main amd64 librhash1 amd64 1.4.6-1.1+b1 [135 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.52.1-4 [158 kB] Get:81 http://deb.debian.org/debian sid/main amd64 cmake amd64 4.3.4-1 [16.2 MB] Get:82 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:84 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:85 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:86 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:88 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:95 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:96 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.55.0-1 [2381 kB] Get:97 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.55.0-1 [9658 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-2+b2 [29.0 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-2 [878 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.90.0-1 [1618 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libhnswlib-dev all 0.9.0-2 [23.9 kB] Get:120 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:123 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:125 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:126 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.58.0-1 [225 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.58.0-1 [53.1 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.58.0-1 [34.2 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:146 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-16 [239 kB] Get:147 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-31 [176 kB] Get:148 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:149 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.1-6 [28.4 MB] Get:150 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:151 http://deb.debian.org/debian sid/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:152 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.58.1-1 [649 kB] Get:153 http://deb.debian.org/debian sid/main amd64 r-bioc-assorthead all 1.6.3+dfsg3-1 [419 kB] Get:154 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.23-1-1 [1457 kB] Get:155 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:156 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-3 [503 kB] Get:157 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.24.0-1 [444 kB] Get:158 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.50.2+dfsg-1 [1851 kB] Get:159 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.46.0-1 [2336 kB] Get:160 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:161 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.12.0+dfsg-1 [822 kB] Get:162 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.52.0-1 [629 kB] Get:163 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.12.2+dfsg-1 [1407 kB] Get:164 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray all 0.38.2+dfsg-1 [1999 kB] Get:165 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.23-1 [96.5 kB] Get:166 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:167 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.1.2-1 [2168 kB] Get:168 http://deb.debian.org/debian sid/main amd64 r-bioc-beachmat amd64 2.28.0+dfsg-1 [588 kB] Get:169 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.72.0-1 [2320 kB] Get:170 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-2 [27.9 kB] Get:171 http://deb.debian.org/debian sid/main amd64 r-bioc-dir.expiry all 1.20.0+dfsg-1 [32.5 kB] Get:172 http://deb.debian.org/debian sid/main amd64 r-bioc-biocmake all 1.4.0+dfsg-1 [36.6 kB] Get:173 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsematrixstats amd64 1.24.0+dfsg-1 [946 kB] Get:174 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedmatrixstats all 1.34.0+ds-1 [505 kB] Get:175 http://deb.debian.org/debian sid/main amd64 r-bioc-seqinfo all 1.2.0+dfsg-1 [390 kB] Get:176 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges all 1.64.0+dfsg-1 [2087 kB] Get:177 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5lib amd64 2.0.0+dfsg2-1 [2719 kB] Get:178 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5filters amd64 1.24.1+dfsg-1 [142 kB] Get:179 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5 amd64 2.56.0+dfsg-3 [2506 kB] Get:180 http://deb.debian.org/debian sid/main amd64 r-bioc-h5mread amd64 1.4.0+ds-1 [4354 kB] Get:181 http://deb.debian.org/debian sid/main amd64 r-bioc-hdf5array all 1.40.0-1 [8882 kB] Get:182 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.42.0+dfsg-1 [1119 kB] Get:183 http://deb.debian.org/debian sid/main amd64 r-bioc-singlecellexperiment all 1.34.0+ds-1 [837 kB] Get:184 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:185 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:186 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:187 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:188 http://deb.debian.org/debian sid/main amd64 r-cran-rcpparmadillo amd64 15.6.0-1-1 [847 kB] Get:189 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Preconfiguring packages ... Fetched 428 MB in 6s (70.8 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5500 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.8.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.4-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.7+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../140-libxft2_2.3.6-1+b5_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b5) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../141-libxss1_1%3a1.2.3-1+b4_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b4) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../142-libtk8.6_8.6.18-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.18-1) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../143-libxt6t64_1%3a1.2.1-1.3+b2_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3+b2) ... 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Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up perl (5.42.3-1) ... Setting up libglib2.0-0t64:amd64 (2.90.0-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.47-6) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-2) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libdpkg-perl (1.23.11) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libc6-dev:amd64 (2.43-5) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up cpp-16-x86-64-linux-gnu (16.2.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up binutils-x86-64-linux-gnu (2.47-6) ... Setting up cpp-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libpango-1.0-0:amd64 (1.58.0-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-2) ... Setting up binutils (2.47-6) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up dpkg-dev (1.23.11) ... Setting up liberror-perl (0.17030-1) ... Setting up libstdc++-16-dev:amd64 (16.2.0-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up g++-16-x86-64-linux-gnu (16.2.0-2) ... Setting up cpp-16 (16.2.0-2) ... Setting up libpangoft2-1.0-0:amd64 (1.58.0-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.0-1) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up gcc-16 (16.2.0-2) ... Setting up r-base-core (4.6.1-6) ... Creating config file /etc/R/Renviron with new version Setting up git (1:2.55.0-1) ... Setting up r-cran-lattice (0.23-1-1) ... Setting up g++-16 (16.2.0-2) ... Setting up cpp (4:16.1.0-3) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up cmake (4.3.4-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-filelock (1.0.3-2) ... Setting up r-cran-littler (0.3.23-1) ... Setting up r-cran-rcpp (1.1.2-1) ... Setting up r-cran-rlang (1.3.0-1) ... Setting up r-cran-matrixstats (1.5.0-3) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up gcc (4:16.1.0-3) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.12) ... Setting up r-cran-rcpparmadillo (15.6.0-1-1) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up r-bioc-biocgenerics (0.58.1-1) ... Setting up r-bioc-matrixgenerics (1.24.0-1) ... Setting up r-bioc-biobase (2.72.0-1) ... Setting up r-bioc-s4vectors (0.50.2+dfsg-1) ... Setting up r-bioc-iranges (2.46.0-1) ... Setting up r-bioc-assorthead (1.6.3+dfsg3-1) ... Setting up r-bioc-dir.expiry (1.20.0+dfsg-1) ... Setting up r-bioc-sparsematrixstats (1.24.0+dfsg-1) ... Setting up r-bioc-biocmake (1.4.0+dfsg-1) ... Setting up r-bioc-s4arrays (1.12.0+dfsg-1) ... Setting up r-bioc-rhdf5lib (2.0.0+dfsg2-1) ... Setting up r-bioc-seqinfo (1.2.0+dfsg-1) ... Setting up r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Setting up r-bioc-xvector (0.52.0-1) ... Setting up r-bioc-sparsearray (1.12.2+dfsg-1) ... Setting up r-bioc-genomicranges (1.64.0+dfsg-1) ... Setting up r-bioc-rhdf5 (2.56.0+dfsg-3) ... Setting up r-bioc-delayedarray (0.38.2+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Setting up r-bioc-h5mread (1.4.0+ds-1) ... Setting up r-bioc-delayedmatrixstats (1.34.0+ds-1) ... Setting up r-bioc-beachmat (2.28.0+dfsg-1) ... Setting up r-bioc-hdf5array (1.40.0-1) ... Setting up r-bioc-singlecellexperiment (1.34.0+ds-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-5) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m38.2s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m38.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpezrr9vbg/./tmp/piuparts-depends-dummy.deb 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m38.2s DUMP: piuparts-depends-dummy install ok installed 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m38.2s DUMP: (Reading database ... 27237 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'clean'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'clean'] 0m38.3s DEBUG: Recording chroot state 0m38.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 0m40.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 0m41.6s DEBUG: No broken symlinks as far as we can find. 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy'] 0m42.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy', 'r-bioc-glmgampoi'] 0m42.5s DUMP: r-bioc-glmgampoi: Installed: (none) Candidate: 1.24.0+dfsg-1 Version table: 1.24.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m42.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy', 'r-bioc-glmgampoi'] 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', 'install', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m43.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-glmgampoi 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1229 kB of archives. After this operation, 2189 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-glmgampoi amd64 1.24.0+dfsg-1 [1229 kB] Fetched 1229 kB in 0s (8415 kB/s) Selecting previously unselected package r-bioc-glmgampoi. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27237 files and directories currently installed.) Preparing to unpack .../r-bioc-glmgampoi_1.24.0+dfsg-1_amd64.deb ... Unpacking r-bioc-glmgampoi (1.24.0+dfsg-1) ... Setting up r-bioc-glmgampoi (1.24.0+dfsg-1) ... 0m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', 'install', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m43.9s INFO: Running scripts post_install 0m43.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_install_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_install_exceptions'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'systemd-tmpfiles', '--cat-config'] 0m44.0s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m44.0s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'systemd-tmpfiles', '--cat-config'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'remove', 'r-bioc-glmgampoi'] 0m45.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: cmake fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libarchive13t64 libblas3 libblosc1 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libhnswlib-dev libice6 libicu78 libjbig0 libjpeg62-turbo libjsoncpp26 liblapack3 liblerc4 libngtcp2-crypto-ossl0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpng16-16t64 libreadline8t64 librhash1 libsharpyuv0 libsm6 libsnappy1v5 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 r-base-core r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocmake r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-cli r-cran-filelock r-cran-generics r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-pkgkitten r-cran-rcpp r-cran-rcpparmadillo r-cran-rlang r-cran-vctrs r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils zip Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: r-bioc-glmgampoi 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 2189 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27284 files and directories currently installed.) Removing r-bioc-glmgampoi (1.24.0+dfsg-1) ... 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'remove', 'r-bioc-glmgampoi'] 0m45.0s INFO: Reinstalling after remove 0m45.0s INFO: Running scripts pre_install 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_database-server'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_database-server'] 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_exceptions'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_exceptions'] 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_extras'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_extras'] 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy'] 0m45.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy', 'r-bioc-glmgampoi'] 0m45.1s DUMP: r-bioc-glmgampoi: Installed: (none) Candidate: 1.24.0+dfsg-1 Version table: 1.24.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy', 'r-bioc-glmgampoi'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', 'install', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m46.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-glmgampoi 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1229 kB of archives. After this operation, 2189 kB of additional disk space will be used. Selecting previously unselected package r-bioc-glmgampoi. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27237 files and directories currently installed.) Preparing to unpack .../r-bioc-glmgampoi_1.24.0+dfsg-1_amd64.deb ... Unpacking r-bioc-glmgampoi (1.24.0+dfsg-1) ... Setting up r-bioc-glmgampoi (1.24.0+dfsg-1) ... 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', 'install', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m46.2s INFO: Running scripts post_install 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_install_exceptions'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_install_exceptions'] 0m46.2s INFO: Running scripts pre_install 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_database-server'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_database-server'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_exceptions'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_exceptions'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_extras'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_extras'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy'] 0m46.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy', 'r-bioc-glmgampoi'] 0m46.3s DUMP: r-bioc-glmgampoi: Installed: 1.24.0+dfsg-1 Candidate: 1.24.0+dfsg-1 Version table: *** 1.24.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-cache', 'policy', 'r-bioc-glmgampoi'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m47.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/1229 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27284 files and directories currently installed.) Preparing to unpack .../r-bioc-glmgampoi_1.24.0+dfsg-1_amd64.deb ... Unpacking r-bioc-glmgampoi (1.24.0+dfsg-1) over (1.24.0+dfsg-1) ... Setting up r-bioc-glmgampoi (1.24.0+dfsg-1) ... 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-glmgampoi=1.24.0+dfsg-1'] 0m47.5s INFO: Running scripts post_install 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_install_exceptions'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 0m48.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 0m50.8s DEBUG: No broken symlinks as far as we can find. 0m52.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', '-ac', '--ignore-obsolete'] 0m56.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', '-ac', '--ignore-obsolete'] 0m56.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m56.6s DUMP: 0.17.5+b5 0m56.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m56.6s INFO: Running adequate version 0.17.5+b5 now. 0m56.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'r-bioc-glmgampoi'] 0m56.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'r-bioc-glmgampoi'] 0m56.6s INFO: Running scripts pre_remove 0m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m56.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_exceptions'] 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_exceptions'] 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m0.3s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed binutils binutils 2.47-6 install ok installed binutils-common:amd64 binutils-common 2.47-6 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47-6 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6+b2 install ok installed ca-certificates ca-certificates 20260816 install ok installed cmake cmake 4.3.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.2.0-2 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.2.0-2 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed dpkg-dev dpkg-dev 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.2.0-2 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.2.0-2 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-16 gcc-16 16.2.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-2 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.2.0-2 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed git git 1:2.55.0-1 install ok installed git-man git-man 1:2.55.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libarchive13t64:amd64 libarchive13t64 3.8.9-1 install ok installed libasan8:amd64 libasan8 16.2.0-2 install ok installed libatomic1:amd64 libatomic1 16.2.0-2 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libbinutils:amd64 libbinutils 2.47-6 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-5 install ok installed libc-dev-bin libc-dev-bin 2.43-5 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-5 install ok installed libc6:amd64 libc6 2.43-5 install ok installed libc6-dev:amd64 libc6-dev 2.43-5 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.5-2 install ok installed libcc1-0:amd64 libcc1-0 16.2.0-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.47-6 install ok installed libctf0:amd64 libctf0 2.47-6 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.22.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.22.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libdpkg-perl libdpkg-perl 1.23.11 install ok installed liberror-perl liberror-perl 0.17030-1 install ok installed libexpat1:amd64 libexpat1 2.8.4-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.2.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-2 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.90.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.2.0-2 install ok installed libgprofng0:amd64 libgprofng0 2.47-6 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libhnswlib-dev libhnswlib-dev 0.9.0-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhwasan0:amd64 libhwasan0 16.2.0-2 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libisl23:amd64 libisl23 0.28-1 install ok installed libitm1:amd64 libitm1 16.2.0-2 install ok installed libjansson4:amd64 libjansson4 2.15.1-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjsoncpp26:amd64 libjsoncpp26 1.9.8-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed liblsan0:amd64 liblsan0 16.2.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.0-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.0-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.0-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.4 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-2 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.58-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed librhash1:amd64 librhash1 1.4.6-1.1+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsframe3:amd64 libsframe3 2.47-6 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b2 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-2+b2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++-16-dev:amd64 libstdc++-16-dev 16.2.0-2 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 262~rc2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.18+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtsan2:amd64 libtsan2 16.2.0-2 install ok installed libubsan1:amd64 libubsan1 16.2.0-2 install ok installed libudev1:amd64 libudev1 262~rc2-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libuv1t64:amd64 libuv1t64 1.52.1-4 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.1.13-1 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed make make 4.4.1-3 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl openssl 3.6.4-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed patch patch 2.8-2 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed r-base-core r-base-core 4.6.1-6 install ok installed r-bioc-assorthead r-bioc-assorthead 1.6.3+dfsg3-1 install ok installed r-bioc-beachmat r-bioc-beachmat 2.28.0+dfsg-1 install ok installed r-bioc-biobase r-bioc-biobase 2.72.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-1 install ok installed r-bioc-biocmake r-bioc-biocmake 1.4.0+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.38.2+dfsg-1 install ok installed r-bioc-delayedmatrixstats r-bioc-delayedmatrixstats 1.34.0+ds-1 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.20.0+dfsg-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.64.0+dfsg-1 install ok installed r-bioc-glmgampoi r-bioc-glmgampoi 1.24.0+dfsg-1 install ok installed r-bioc-h5mread r-bioc-h5mread 1.4.0+ds-1 install ok installed r-bioc-hdf5array r-bioc-hdf5array 1.40.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.46.0-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.24.0-1 install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.56.0+dfsg-3 install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.24.1+dfsg-1 install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 2.0.0+dfsg2-1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.12.0+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.50.2+dfsg-1 install ok installed r-bioc-seqinfo r-bioc-seqinfo 1.2.0+dfsg-1 install ok installed r-bioc-singlecellexperiment r-bioc-singlecellexperiment 1.34.0+ds-1 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.12.2+dfsg-1 install ok installed r-bioc-sparsematrixstats r-bioc-sparsematrixstats 1.24.0+dfsg-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.42.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.52.0-1 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-cli r-cran-cli 3.6.6-1 install ok installed r-cran-filelock r-cran-filelock 1.0.3-2 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-glue r-cran-glue 1.8.1-2 install ok installed r-cran-lattice r-cran-lattice 0.23-1-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.23-1 install ok installed r-cran-matrix r-cran-matrix 1.7-6-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-3 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-rcpp r-cran-rcpp 1.1.2-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 15.6.0-1-1 install ok installed r-cran-rlang r-cran-rlang 1.3.0-1 install ok installed r-cran-vctrs r-cran-vctrs 0.7.3-2 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed unzip unzip 6.0-31 install ok installed util-linux util-linux 2.42.3-1 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xz-utils xz-utils 5.8.4-1 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-cli', 'r-cran-filelock', 'r-cran-generics', 'r-cran-glue', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-pkgkitten', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rlang', 'r-cran-vctrs', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'r-bioc-glmgampoi'] 1m3.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdeflate0 libdpkg-perl liberror-perl libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhnswlib-dev libhwasan0 libice6 libicu78 libidn2-0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libmpc3 libmpfr6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librhash1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1t64 libstdc++-16-dev libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev make openssl patch perl perl-modules-5.42 r-base-core r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocmake r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-glmgampoi r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-cli r-cran-filelock r-cran-generics r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-pkgkitten r-cran-rcpp r-cran-rcpparmadillo r-cran-rlang r-cran-vctrs r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils xz-utils zip 0 upgraded, 0 newly installed, 189 to remove and 0 not upgraded. After this operation, 1403 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27284 files and directories currently installed.) Removing r-bioc-glmgampoi (1.24.0+dfsg-1) ... Removing r-bioc-hdf5array (1.40.0-1) ... Removing r-bioc-h5mread (1.4.0+ds-1) ... Removing r-bioc-rhdf5 (2.56.0+dfsg-3) ... Removing r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Removing build-essential (12.12) ... Removing g++ (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing dpkg-dev (1.23.11) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing bzip2 (1.0.8-6+b2) ... Removing r-bioc-singlecellexperiment (1.34.0+ds-1) ... Removing r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Removing r-bioc-delayedmatrixstats (1.34.0+ds-1) ... Removing r-bioc-sparsematrixstats (1.24.0+dfsg-1) ... Removing r-bioc-beachmat (2.28.0+dfsg-1) ... Removing r-bioc-delayedarray (0.38.2+dfsg-1) ... Removing r-bioc-sparsearray (1.12.2+dfsg-1) ... Removing r-bioc-s4arrays (1.12.0+dfsg-1) ... Removing r-cran-abind (1.4-8-1) ... Removing r-cran-vctrs (0.7.3-2) ... Removing r-cran-rcpparmadillo (15.6.0-1-1) ... Removing r-cran-rcpp (1.1.2-1) ... Removing r-bioc-rhdf5lib (2.0.0+dfsg2-1) ... Removing r-bioc-biocmake (1.4.0+dfsg-1) ... Removing cmake (4.3.4-1) ... Removing cpp (4:16.1.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing g++-16 (16.2.0-2) ... Removing g++-16-x86-64-linux-gnu (16.2.0-2) ... Removing r-bioc-assorthead (1.6.3+dfsg3-1) ... Removing git (1:2.55.0-1) ... Removing git-man (1:2.55.0-1) ... Removing libarchive13t64:amd64 (3.8.9-1) ... Removing libstdc++-16-dev:amd64 (16.2.0-2) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing libc6-dev:amd64 (2.43-5) ... Removing libc-dev-bin (2.43-5) ... Removing libcurl4-gnutls:amd64 (8.22.0-1) ... Removing libdpkg-perl (1.23.11) ... Removing liberror-perl (0.17030-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing r-bioc-xvector (0.52.0-1) ... Removing r-bioc-genomicranges (1.64.0+dfsg-1) ... Removing r-bioc-seqinfo (1.2.0+dfsg-1) ... Removing r-bioc-iranges (2.46.0-1) ... Removing libhnswlib-dev (0.9.0-2) ... Removing libjsoncpp26:amd64 (1.9.8-2) ... Removing librhash1:amd64 (1.4.6-1.1+b1) ... Removing libsnappy1v5:amd64 (1.2.2-2+b2) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libuv1t64:amd64 (1.52.1-4) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing linux-libc-dev (7.1.13-1) ... Removing make (4.4.1-3) ... Removing patch (2.8-2) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing r-bioc-biobase (2.72.0-1) ... Removing r-bioc-s4vectors (0.50.2+dfsg-1) ... Removing r-bioc-matrixgenerics (1.24.0-1) ... Removing r-bioc-dir.expiry (1.20.0+dfsg-1) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-cli (3.6.6-1) ... Removing r-cran-filelock (1.0.3-2) ... Removing r-cran-glue (1.8.1-2) ... Removing r-cran-littler (0.3.23-1) ... Removing r-cran-matrixstats (1.5.0-3) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-rlang (1.3.0-1) ... Removing xz-utils (5.8.4-1) ... Removing gcc-16 (16.2.0-2) ... Removing binutils (2.47-6) ... Removing libgprofng0:amd64 (2.47-6) ... Removing gcc-16-x86-64-linux-gnu (16.2.0-2) ... Removing binutils-x86-64-linux-gnu (2.47-6) ... Removing libctf0:amd64 (2.47-6) ... Removing libbinutils:amd64 (2.47-6) ... Removing binutils-common:amd64 (2.47-6) ... Removing r-cran-matrix (1.7-6-1) ... Removing cpp-16 (16.2.0-2) ... Removing cpp-16-x86-64-linux-gnu (16.2.0-2) ... Removing libgcc-16-dev:amd64 (16.2.0-2) ... Removing libasan8:amd64 (16.2.0-2) ... Removing libcc1-0:amd64 (16.2.0-2) ... Removing libctf-nobfd0:amd64 (2.47-6) ... Removing libhwasan0:amd64 (16.2.0-2) ... Removing libisl23:amd64 (0.28-1) ... Removing libitm1:amd64 (16.2.0-2) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing liblsan0:amd64 (16.2.0-2) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing libquadmath0:amd64 (16.2.0-2) ... Removing libsframe3:amd64 (2.47-6) ... Removing libtsan2:amd64 (16.2.0-2) ... Removing libubsan1:amd64 (16.2.0-2) ... Removing r-bioc-biocgenerics (0.58.1-1) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-lattice (0.23-1-1) ... Removing r-pkg-team-core-architecture (20260707) ... Removing r-base-core (4.6.1-6) ... Removing ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.58.0-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.0-1) ... Removing libpango-1.0-0:amd64 (1.58.0-1) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.90.0-1) ... Removing libatomic1:amd64 (16.2.0-2) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libfreetype6:amd64 (2.14.3+dfsg-2) ... Removing libcurl4t64:amd64 (8.22.0-1) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b1) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libexpat1:amd64 (2.8.4-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing libgfortran5:amd64 (16.2.0-2) ... Removing libgomp1:amd64 (16.2.0-2) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libpng16-16t64:amd64 (1.6.58-1) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebp7:amd64 (1.5.0-0.1+b2) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libthai-data (0.1.30-3) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing openssl (3.6.4-1) ... Removing readline-common (8.3-4) ... Removing unzip (6.0-31) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-16) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Processing triggers for libc-bin (2.43-5) ... 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-cli', 'r-cran-filelock', 'r-cran-generics', 'r-cran-glue', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-pkgkitten', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rlang', 'r-cran-vctrs', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'r-bioc-glmgampoi'] 1m3.2s INFO: Running scripts post_remove 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_remove_cleanup'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_remove_cleanup'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_remove_exceptions'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_remove_exceptions'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-cli', 'r-cran-filelock', 'r-cran-generics', 'r-cran-glue', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-pkgkitten', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rlang', 'r-cran-vctrs', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip'] 1m3.6s DUMP: (Reading database ... 5555 files and directories currently installed.) Purging configuration files for binutils (2.47-6) ... Purging configuration files for binutils-common:amd64 (2.47-6) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove build-essential which is not installed dpkg: warning: ignoring request to remove bzip2 which is not installed Purging configuration files for ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cmake which is not installed Purging configuration files for cpp (4:16.1.0-3) ... dpkg: warning: ignoring request to remove cpp-16 which is not installed dpkg: warning: ignoring request to remove cpp-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which is not installed Purging configuration files for dpkg-dev (1.23.11) ... Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove g++ which is not installed dpkg: warning: ignoring request to remove g++-16 which is not installed dpkg: warning: ignoring request to remove g++-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc which is not installed dpkg: warning: ignoring request to remove gcc-16 which is not installed dpkg: warning: ignoring request to remove gcc-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which is not installed Purging configuration files for git (1:2.55.0-1) ... dpkg: warning: ignoring request to remove git-man which is not installed dpkg: warning: ignoring request to remove libarchive13t64 which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libbinutils which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libblosc1 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcc1-0 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libctf-nobfd0 which is not installed dpkg: warning: ignoring request to remove libctf0 which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdpkg-perl which is not installed dpkg: warning: ignoring request to remove liberror-perl which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.90.0-1) ... dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgprofng0 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libhnswlib-dev which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libice6 which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libisl23 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjansson4 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libjsoncpp26 which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove libmpc3 which is not installed dpkg: warning: ignoring request to remove libmpfr6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove librhash1 which is not installed dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsframe3 which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libstdc++-16-dev which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove make which is not installed Purging configuration files for openssl (3.6.4-1) ... dpkg: warning: ignoring request to remove patch which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed Purging configuration files for r-base-core (4.6.1-6) ... dpkg: warning: ignoring request to remove r-bioc-assorthead which is not installed dpkg: warning: ignoring request to remove r-bioc-beachmat which is not installed dpkg: warning: ignoring request to remove r-bioc-biobase which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocmake which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedmatrixstats which is not installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which is not installed dpkg: warning: ignoring request to remove r-bioc-h5mread which is not installed dpkg: warning: ignoring request to remove r-bioc-hdf5array which is not installed dpkg: warning: ignoring request to remove r-bioc-iranges which is not installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5 which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which is not installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which is not installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which is not installed dpkg: warning: ignoring request to remove r-bioc-seqinfo which is not installed dpkg: warning: ignoring request to remove r-bioc-singlecellexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsematrixstats which is not installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-xvector which is not installed dpkg: warning: ignoring request to remove r-cran-abind which is not installed dpkg: warning: ignoring request to remove r-cran-cli which is not installed dpkg: warning: ignoring request to remove r-cran-filelock which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-glue which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-lifecycle which is not installed dpkg: warning: ignoring request to remove r-cran-littler which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-matrixstats which is not installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which is not installed dpkg: warning: ignoring request to remove r-cran-rcpp which is not installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove xz-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed 1m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-cli', 'r-cran-filelock', 'r-cran-generics', 'r-cran-glue', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-pkgkitten', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rlang', 'r-cran-vctrs', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip'] 1m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', 'r-bioc-glmgampoi'] 1m3.6s DUMP: dpkg: warning: ignoring request to remove r-bioc-glmgampoi which is not installed 1m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', 'r-bioc-glmgampoi'] 1m3.6s INFO: Running scripts post_purge 1m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_purge_exceptions'] 1m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_purge_exceptions'] 1m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_purge_manual_cleanup'] 1m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_purge_manual_cleanup'] 1m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', '--pending'] 1m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--purge', '--pending'] 1m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--remove', '--pending'] 1m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg', '--remove', '--pending'] 1m3.6s INFO: Running scripts post_test 1m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_test_exceptions'] 1m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'tmp/scripts/post_test_exceptions'] 1m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 1m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 1m4.2s DEBUG: No broken symlinks as far as we can find. 1m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-divert', '--list'] 1m4.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'dpkg-divert', '--list'] 1m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'clean'] 1m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg', 'apt-get', 'clean'] 1m4.2s DEBUG: Recording chroot state 1m5.6s INFO: PASS: Installation and purging test. 1m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/shm'] 1m6.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/shm'] 1m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/console'] 1m6.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/console'] 1m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/ptmx'] 1m6.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/ptmx'] 1m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/pts'] 1m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/dev/pts'] 1m6.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/proc'] 1m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg/proc'] 1m6.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 1m6.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpezrr9vbg'] 1m6.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpezrr9vbg 1m6.2s INFO: PASS: All tests. 1m6.2s INFO: piuparts run ends. ret=0 End: 2026-09-14 03:57:17 GMT