Start: 2026-09-15 16:50:20 GMT Package: r-bioc-gsva Version: 2.6.6+ds-1 Installed-Size: 7460 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-s4vectors, r-bioc-s4arrays, r-bioc-hdf5array, r-bioc-sparsearray, r-bioc-delayedarray, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-delayedmatrixstats, r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-biocsingular, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-cran-cli, r-cran-memuse, libc6 (>= 2.4), r-pkg-team-core-architecture Description: Gene Set Variation Analysis for Microarray and RNA-Seq Data Homepage: https://bioconductor.org/packages/GSVA/ Description-md5: 3da7e33cee269ad5132ade65e324473d Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.6.6+ds-1_amd64.deb Size: 3759708 MD5sum: 5fd4dcd347add1a1c026f4f84fd72afc SHA256: d8fa15c41580eca2395f6383f7c3ff8282751870a853d4ac5dd30134e8fcab44 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-gsva=2.6.6+ds-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291514~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-gsva=2.6.6+ds-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmphl3u1vja 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmphl3u1vja 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmphl3u1vja/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmphl3u1vja/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'update'] 0m4.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7730 kB] Fetched 18.7 MB in 3s (5931 kB/s) Reading package lists... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'update'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libcap-ng0 libpcre2-8-0 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 331 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.9.6-1 [19.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.48-3 [312 kB] Fetched 331 kB in 0s (3552 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.9.6-1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.9.6-1) over (0.9.5-2) ... Setting up libcap-ng0:amd64 (0.9.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.48-3_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.48-3) over (10.48-2) ... Setting up libpcre2-8-0:amd64 (10.48-3) ... Processing triggers for libselinux1:amd64 (3.11-2) ... Processing triggers for libc-bin (2.43-5) ... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-yf', 'dist-upgrade'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.2s DUMP: 810a2d9f450ca646d55d68d75c130c79 - 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.2s INFO: Running scripts post_setup 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_dummy_users'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_fake-essential'] 0m8.7s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69+nmu1). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mariadb | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1917 kB of archives. After this operation, 5465 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.1.0 [627 kB] Preconfiguring packages ... Fetched 1917 kB in 0s (15.7 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4959 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.1.0_all.deb ... Unpacking dbconfig-common (2.1.0) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.7-1) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.7-1) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.1.0) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.43-5) ... 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_fake-essential'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_forbid_home'] 0m8.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_forbid_home'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_minimize'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_setup_zz_backports'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'clean'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'clean'] 0m8.8s DEBUG: Recording chroot state 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.4s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-2 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-5 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-5 install ok installed libc6:amd64 libc6 2.43-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 262~rc2-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262~rc2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.3-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-divert', '--list'] 0m9.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-divert', '--list'] 0m9.5s INFO: Running scripts is_testable 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s INFO: apt-cache does not know about any of the requested packages 0m9.5s INFO: Running scripts pre_test 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_test_root_password'] 0m9.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_test_root_password'] 0m9.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 0m10.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 0m10.4s DEBUG: No broken symlinks as far as we can find. 0m10.4s INFO: Running scripts pre_install 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_database-server'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_database-server'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_exceptions'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_exceptions'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_extras'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_extras'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva=2.6.6+ds-1'] 0m11.4s DUMP: Package: r-bioc-gsva Version: 2.6.6+ds-1 Installed-Size: 7460 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-s4vectors, r-bioc-s4arrays, r-bioc-hdf5array, r-bioc-sparsearray, r-bioc-delayedarray, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-delayedmatrixstats, r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-biocsingular, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-cran-cli, r-cran-memuse, libc6 (>= 2.4), r-pkg-team-core-architecture Description-en: Gene Set Variation Analysis for Microarray and RNA-Seq Data Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene-set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross-tissue pathway analysis, in a pathway-centric manner. Description-md5: 3da7e33cee269ad5132ade65e324473d Homepage: https://bioconductor.org/packages/GSVA/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.6.6+ds-1_amd64.deb Size: 3759708 MD5sum: 5fd4dcd347add1a1c026f4f84fd72afc SHA256: d8fa15c41580eca2395f6383f7c3ff8282751870a853d4ac5dd30134e8fcab44 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva=2.6.6+ds-1'] 0m11.4s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-s4vectors, r-bioc-s4arrays, r-bioc-hdf5array, r-bioc-sparsearray, r-bioc-delayedarray, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-delayedmatrixstats, r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-biocsingular, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-cran-cli, r-cran-memuse, libc6 (>= 2.4), r-pkg-team-core-architecture Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m11.4s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpaakkagqe/piuparts-depends-dummy'] 0m11.4s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpaakkagqe/piuparts-depends-dummy.deb'. 0m11.4s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpaakkagqe/piuparts-depends-dummy'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.4s DUMP: 3.3.3 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.4s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpaakkagqe/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmphl3u1vja/tmp 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 2m20.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man imagemagick-7-common libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl liberror-perl libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu78 libidn2-0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmpc3 libmpfr6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libraw25 libreadline8t64 librhash1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1t64 libstdc++-16-dev libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev make openssl patch perl perl-modules-5.42 r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocmake r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-httr2 r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-memuse r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils xz-utils zip Suggested packages: binutils-doc gprofng-gui binutils-gold bzip2-doc cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-16-locales cpp-16-doc debian-keyring debian-tag2upload-keyring g++-multilib g++-16-multilib gcc-16-doc gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu gettext-base git-doc git-email git-gui gitk gitweb git-cvs git-svn lrzip libboost-doc libboost1.90-doc libboost-atomic1.90-dev libboost-chrono1.90-dev libboost-container1.90-dev libboost-context1.90-dev libboost-contract1.90-dev libboost-coroutine1.90-dev libboost-date-time1.90-dev libboost-exception1.90-dev libboost-fiber1.90-dev libboost-filesystem1.90-dev libboost-graph-parallel1.90-dev libboost-graph1.90-dev libboost-iostreams1.90-dev libboost-json1.90-dev libboost-locale1.90-dev libboost-log1.90-dev libboost-math1.90-dev libboost-mpi-python1.90-dev libboost-mpi1.90-dev libboost-nowide1.90-dev libboost-numpy1.90-dev libboost-program-options1.90-dev libboost-python1.90-dev libboost-random1.90-dev libboost-regex1.90-dev libboost-serialization1.90-dev libboost-stacktrace1.90-dev libboost-test1.90-dev libboost-thread1.90-dev libboost-timer1.90-dev libboost-type-erasure1.90-dev libboost-url1.90-dev libboost-wave1.90-dev libboost1.90-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg bzr libfftw3-bin libfftw3-dev gdbm-l10n low-memory-monitor gnutls-bin krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc liblcms2-utils libmagickcore-7.q16-10-extra libstdc++-16-doc tcl8.6 tk8.6 make-doc ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-genefilter r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-biocstyle r-cran-knitr r-cran-rmarkdown r-cran-testthat r-cran-microbenchmark r-cran-profmem r-cran-markdown r-bioc-scrnaseq r-cran-rtsne r-bioc-dropletutils r-cran-rmysql r-cran-getopt r-cran-inline r-cran-rmpi r-cran-rlecuyer readline-doc Recommended packages: fakeroot sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg libalgorithm-merge-perl less ssh-client manpages manpages-dev libfile-fcntllock-perl liblocale-gettext-perl libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common ghostscript fonts-urw-base35 publicsuffix libsasl2-modules netbase r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man imagemagick-7-common libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl liberror-perl libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu78 libidn2-0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmpc3 libmpfr6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libraw25 libreadline8t64 librhash1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1t64 libstdc++-16-dev libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev make openssl patch perl perl-modules-5.42 piuparts-depends-dummy r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocmake r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-httr2 r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-memuse r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils xz-utils zip 0 upgraded, 265 newly installed, 0 to remove and 0 not upgraded. Need to get 492 MB/492 MB of archives. After this operation, 1656 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [818 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.4-1 [130 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-2 [151 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:8 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:9 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:10 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libde265-0 amd64 1.1.2-1 [213 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libheif-plugin-libde265 amd64 1.23.3-1 [18.3 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libheif-plugin-dav1d amd64 1.23.3-1 [20.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libheif1 amd64 1.23.3-1 [857 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:20 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16.2.0-2 [10.4 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.90.0-1 [1618 kB] Get:24 http://deb.debian.org/debian sid/main amd64 liblqr-1-0 amd64 0.4.2-2.2+b1 [30.0 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.6.2-2 [427 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libraw25 amd64 0.22.1-1 [424 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:29 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1+b2 [113 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1+b2 [126 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:41 http://deb.debian.org/debian sid/main amd64 imagemagick-7-common all 8:7.1.2.31+dfsg1-1 [73.6 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.2.31+dfsg1-1 [1960 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.2.31+dfsg1-1 [365 kB] Get:44 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:45 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:46 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.4-1 [1546 kB] Get:47 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260816 [134 kB] Get:48 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:52 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.3-1 [266 kB] Get:53 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.4-1 [761 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libsframe3 amd64 2.47-6 [86.2 kB] Get:55 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.47-6 [2686 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.47-6 [562 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.47-6 [846 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.47-6 [166 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.47-6 [98.2 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:61 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.47-6 [1132 kB] Get:62 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.47-6 [288 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.43-5 [39.3 kB] Get:64 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 7.1.13-1 [2064 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.43-5 [2069 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:69 http://deb.debian.org/debian sid/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-2 [76.0 MB] Get:70 http://deb.debian.org/debian sid/main amd64 cpp-16 amd64 16.2.0-2 [1272 B] Get:71 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:72 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:73 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 16.2.0-2 [46.1 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16.2.0-2 [27.0 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16.2.0-2 [2889 kB] Get:76 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16.2.0-2 [1281 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16.2.0-2 [2574 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16.2.0-2 [1136 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16.2.0-2 [1580 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16.2.0-2 [147 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libgcc-16-dev amd64 16.2.0-2 [2782 kB] Get:82 http://deb.debian.org/debian sid/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-2 [87.1 MB] Get:83 http://deb.debian.org/debian sid/main amd64 gcc-16 amd64 16.2.0-2 [535 kB] Get:84 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:85 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:86 http://deb.debian.org/debian sid/main amd64 libstdc++-16-dev amd64 16.2.0-2 [2754 kB] Get:87 http://deb.debian.org/debian sid/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-2 [82.0 MB] Get:88 http://deb.debian.org/debian sid/main amd64 g++-16 amd64 16.2.0-2 [35.2 kB] Get:89 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:90 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:91 http://deb.debian.org/debian sid/main amd64 make amd64 4.4.1-3 [463 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.23.11 [650 kB] Get:93 http://deb.debian.org/debian sid/main amd64 patch amd64 2.8-2 [134 kB] Get:94 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.23.11 [1005 kB] Get:95 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B] Get:96 http://deb.debian.org/debian sid/main amd64 libarchive13t64 amd64 3.8.9-1 [364 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:103 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libjsoncpp26 amd64 1.9.8-2 [87.5 kB] Get:116 http://deb.debian.org/debian sid/main amd64 librhash1 amd64 1.4.6-1.1+b1 [135 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.52.1-4 [158 kB] Get:118 http://deb.debian.org/debian sid/main amd64 cmake amd64 4.3.4-1 [16.2 MB] Get:119 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:125 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:126 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.55.0-1 [2381 kB] Get:127 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.55.0-1 [9658 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-2+b2 [29.0 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libboost1.90-dev amd64 1.90.0-6.1+b1 [11.3 MB] Get:132 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.90.0.2+nmu1 [3200 B] Get:133 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-2 [878 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libhnswlib-dev all 0.9.0-2 [23.9 kB] Get:144 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:147 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libmagick++-7.q16-5 amd64 8:7.1.2.31+dfsg1-1 [195 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.58.0-1 [225 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.58.0-1 [53.1 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.58.0-1 [34.2 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:165 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-16 [239 kB] Get:166 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-31 [176 kB] Get:167 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:168 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.1-6 [28.4 MB] Get:169 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:170 http://deb.debian.org/debian sid/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:171 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.58.1-1 [649 kB] Get:172 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.72.0-1 [2320 kB] Get:173 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.50.2+dfsg-1 [1851 kB] Get:174 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.46.0-1 [2336 kB] Get:175 http://deb.debian.org/debian sid/main amd64 r-cran-dbi all 1.3.0-1 [871 kB] Get:176 http://deb.debian.org/debian sid/main amd64 r-cran-bit amd64 4.6.0+dfsg-3 [452 kB] Get:177 http://deb.debian.org/debian sid/main amd64 r-cran-bit64 amd64 4.8.6-1 [592 kB] Get:178 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:179 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:180 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:181 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:182 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Get:183 http://deb.debian.org/debian sid/main amd64 r-cran-blob all 1.3.0-1 [54.1 kB] Get:184 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-3 [79.8 kB] Get:185 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-3 [79.6 kB] Get:186 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:187 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-3 [21.7 kB] Get:188 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.5-1 [236 kB] Get:189 http://deb.debian.org/debian sid/main amd64 r-cran-rsqlite amd64 2.4.6-1 [1236 kB] Get:190 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 8.0.0+dfsg-1 [228 kB] Get:191 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-2 [447 kB] Get:192 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.13-2 [47.5 kB] Get:193 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.3-3 [44.4 kB] Get:194 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.1-3 [24.5 kB] Get:195 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.4.2+dfsg-1 [402 kB] Get:196 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:197 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.8+dfsg-1 [471 kB] Get:198 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-9-1 [42.9 kB] Get:199 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.52.0-1 [629 kB] Get:200 http://deb.debian.org/debian sid/main amd64 r-bioc-seqinfo all 1.2.0+dfsg-1 [390 kB] Get:201 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-2 [164 kB] Get:202 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.80.2+dfsg-1 [13.3 MB] Get:203 http://deb.debian.org/debian sid/main amd64 r-bioc-keggrest all 1.52.2+dfsg-1 [189 kB] Get:204 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationdbi all 1.74.0-1 [4484 kB] Get:205 http://deb.debian.org/debian sid/main amd64 r-cran-xml amd64 3.99-0.24-1 [1736 kB] Get:206 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-8-1 [737 kB] Get:207 http://deb.debian.org/debian sid/main amd64 r-bioc-annotate all 1.90.0+dfsg-1 [1861 kB] Get:208 http://deb.debian.org/debian sid/main amd64 r-bioc-assorthead all 1.6.3+dfsg3-1 [419 kB] Get:209 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.23-1-1 [1457 kB] Get:210 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:211 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-3 [503 kB] Get:212 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.24.0-1 [444 kB] Get:213 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:214 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.12.0+dfsg-1 [822 kB] Get:215 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.12.2+dfsg-1 [1407 kB] Get:216 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray all 0.38.2+dfsg-1 [1999 kB] Get:217 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.23-1 [96.5 kB] Get:218 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:219 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.1.2-1 [2168 kB] Get:220 http://deb.debian.org/debian sid/main amd64 r-bioc-beachmat amd64 2.28.0+dfsg-1 [588 kB] Get:221 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.5-1 [209 kB] Get:222 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.6-2 [138 kB] Get:223 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.11.1+dfsg-1 [457 kB] Get:224 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.3.1+dfsg-2 [452 kB] Get:225 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.3+dfsg-1 [229 kB] Get:226 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-3 [224 kB] Get:227 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.2.1-2 [1574 kB] Get:228 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.2.2-1 [575 kB] Get:229 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.9-1 [906 kB] Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.6.0-1 [323 kB] Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.2-3 [1163 kB] Get:232 http://deb.debian.org/debian sid/main amd64 r-cran-dbplyr all 2.6.0+dfsg-1 [1345 kB] Get:233 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-2 [27.9 kB] Get:234 http://deb.debian.org/debian sid/main amd64 r-cran-httr2 all 1.3.0-1 [996 kB] Get:235 http://deb.debian.org/debian sid/main amd64 r-bioc-biocfilecache all 3.2.0+dfsg-1 [310 kB] Get:236 http://deb.debian.org/debian sid/main amd64 r-bioc-dir.expiry all 1.20.0+dfsg-1 [32.5 kB] Get:237 http://deb.debian.org/debian sid/main amd64 r-bioc-biocmake all 1.4.0+dfsg-1 [36.6 kB] Get:238 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-3 [152 kB] Get:239 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-3 [119 kB] Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-4 [20.6 kB] Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.9-2 [121 kB] Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:243 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:244 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.90.0-1 [6220 B] Get:245 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.46.0-1 [971 kB] Get:246 http://deb.debian.org/debian sid/main amd64 r-bioc-scaledmatrix all 1.20.0+dfsg-1 [329 kB] Get:247 http://deb.debian.org/debian sid/main amd64 r-cran-irlba amd64 2.3.7-1 [451 kB] Get:248 http://deb.debian.org/debian sid/main amd64 r-cran-rsvd all 1.0.5-2 [3595 kB] Get:249 http://deb.debian.org/debian sid/main amd64 r-bioc-biocsingular amd64 1.28.0+ds-1+b1 [367 kB] Get:250 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsematrixstats amd64 1.24.0+dfsg-1 [946 kB] Get:251 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedmatrixstats all 1.34.0+ds-1 [505 kB] Get:252 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges all 1.64.0+dfsg-1 [2087 kB] Get:253 http://deb.debian.org/debian sid/main amd64 r-bioc-graph amd64 1.90.0-1 [1285 kB] Get:254 http://deb.debian.org/debian sid/main amd64 r-bioc-gseabase all 1.74.0+ds-1 [720 kB] Get:255 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5lib amd64 2.0.0+dfsg2-1 [2719 kB] Get:256 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5filters amd64 1.24.1+dfsg-1 [142 kB] Get:257 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5 amd64 2.56.0+dfsg-3 [2506 kB] Get:258 http://deb.debian.org/debian sid/main amd64 r-bioc-h5mread amd64 1.4.0+ds-1 [4354 kB] Get:259 http://deb.debian.org/debian sid/main amd64 r-bioc-hdf5array all 1.40.0-1 [8882 kB] Get:260 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.42.0+dfsg-1 [1119 kB] Get:261 http://deb.debian.org/debian sid/main amd64 r-bioc-singlecellexperiment all 1.34.0+ds-1 [837 kB] Get:262 http://deb.debian.org/debian sid/main amd64 r-cran-rjson amd64 0.2.23-1+b1 [101 kB] Get:263 http://deb.debian.org/debian sid/main amd64 r-cran-magick amd64 2.9.1+dfsg-3 [514 kB] Get:264 http://deb.debian.org/debian sid/main amd64 r-bioc-spatialexperiment all 1.22.0+ds-1 [965 kB] Get:265 http://deb.debian.org/debian sid/main amd64 r-cran-memuse amd64 4.2-3-1 [642 kB] Preconfiguring packages ... Fetched 492 MB in 1min 36s (5144 kB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5500 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.8.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.4-1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../001-libgomp1_16.2.0-2_amd64.deb ... Unpacking libgomp1:amd64 (16.2.0-2) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../155-libsm6_2%3a1.2.6-1+b2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1+b2) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../156-libtcl8.6_8.6.18+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.18+dfsg-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../157-libtirpc-common_1.3.7+ds-1_all.deb ... Unpacking libtirpc-common (1.3.7+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../158-libtirpc3t64_1.3.7+ds-1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.7+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../159-libxft2_2.3.6-1+b5_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b5) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../160-libxss1_1%3a1.2.3-1+b4_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b4) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../161-libtk8.6_8.6.18-1_amd64.deb ... 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Setting up libxdmcp6:amd64 (1:1.1.5-2+b1) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up liblerc4:amd64 (4.2.0+ds-1) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libdatrie1:amd64 (0.2.14-2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libxcb-render0:amd64 (1.17.0-2+b2) ... Setting up imagemagick-7-common (8:7.1.2.31+dfsg1-1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libtirpc-common (1.3.7+ds-1) ... Setting up unzip (6.0-31) ... Setting up libbrotli1:amd64 (1.2.0-4+b1) ... Setting up libuv1t64:amd64 (1.52.1-4) ... Setting up binutils-common:amd64 (2.47-6) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libsframe3:amd64 (2.47-6) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up linux-libc-dev (7.1.13-1) ... Setting up libctf-nobfd0:amd64 (2.47-6) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up libcom-err2:amd64 (1.47.4-1+b1) ... Setting up libgomp1:amd64 (16.2.0-2) ... Setting up bzip2 (1.0.8-6+b2) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up libjansson4:amd64 (2.15.1-1) ... Setting up libsnappy1v5:amd64 (1.2.2-2+b2) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up libicu78:amd64 (78.3-2) ... Setting up zip (3.0-16) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:3.1.3-4) ... Setting up libx11-data (2:1.8.13-1) ... Setting up make (4.4.1-3) ... Setting up libmpfr6:amd64 (4.2.2-3) ... Setting up libjsoncpp26:amd64 (1.9.8-2) ... Setting up xz-utils (5.8.4-1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libfribidi0:amd64 (1.0.16-5+b1) ... Setting up libquadmath0:amd64 (16.2.0-2) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up fonts-dejavu-mono (2.37-9) ... Setting up r-pkg-team-core-architecture (20260707) ... Setting up libpng16-16t64:amd64 (1.6.58-1) ... Setting up libmpc3:amd64 (1.3.1-3) ... Setting up libatomic1:amd64 (16.2.0-2) ... Setting up patch (2.8-2) ... Setting up libtcl8.6:amd64 (8.6.18+dfsg-1) ... Setting up fonts-dejavu-core (2.37-9) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libltdl7:amd64 (2.6.2-2) ... Setting up libfftw3-double3:amd64 (3.3.11-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up libgfortran5:amd64 (16.2.0-2) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libwebp7:amd64 (1.5.0-0.1+b2) ... Setting up libubsan1:amd64 (16.2.0-2) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libdav1d7:amd64 (1.5.4-1) ... Setting up libhwasan0:amd64 (16.2.0-2) ... Setting up libtiff6:amd64 (4.7.2-1) ... Setting up libasan8:amd64 (16.2.0-2) ... Setting up libblosc1:amd64 (1.21.5+ds-2+b2) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up libopenjp2-7:amd64 (2.5.4-1.1) ... Setting up git-man (1:2.55.0-1) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libthai-data (0.1.30-3) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up librhash1:amd64 (1.4.6-1.1+b1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libpaper2:amd64 (2.2.5-0.4) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libtsan2:amd64 (16.2.0-2) ... Setting up libbinutils:amd64 (2.47-6) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up libisl23:amd64 (0.28-1) ... Setting up libde265-0:amd64 (1.1.2-1) ... Setting up libc-dev-bin (2.43-5) ... Setting up openssl (3.6.4-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1+b2) ... Setting up libhnswlib-dev (0.9.0-2) ... Setting up libarchive13t64:amd64 (3.8.9-1) ... Setting up readline-common (8.3-4) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (16.2.0-2) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up liblsan0:amd64 (16.2.0-2) ... Setting up libitm1:amd64 (16.2.0-2) ... Setting up libctf0:amd64 (2.47-6) ... Setting up libraw25:amd64 (0.22.1-1) ... Setting up libice6:amd64 (2:1.1.1-1+b2) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libgcc-16-dev:amd64 (16.2.0-2) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1+b2) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up perl (5.42.3-1) ... Setting up libglib2.0-0t64:amd64 (2.90.0-1) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.47-6) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-2) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libdpkg-perl (1.23.11) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up liblqr-1-0:amd64 (0.4.2-2.2+b1) ... Setting up libc6-dev:amd64 (2.43-5) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up cpp-16-x86-64-linux-gnu (16.2.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up binutils-x86-64-linux-gnu (2.47-6) ... Setting up cpp-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libpango-1.0-0:amd64 (1.58.0-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-2) ... Setting up binutils (2.47-6) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up dpkg-dev (1.23.11) ... Setting up liberror-perl (0.17030-1) ... Setting up libstdc++-16-dev:amd64 (16.2.0-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up g++-16-x86-64-linux-gnu (16.2.0-2) ... Setting up libboost1.90-dev:amd64 (1.90.0-6.1+b1) ... Setting up cpp-16 (16.2.0-2) ... Setting up libboost-dev:amd64 (1.90.0.2+nmu1) ... Setting up libpangoft2-1.0-0:amd64 (1.58.0-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.0-1) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up gcc-16 (16.2.0-2) ... Setting up r-base-core (4.6.1-6) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-2) ... Setting up r-cran-futile.options (1.0.1-4) ... Setting up git (1:2.55.0-1) ... Setting up r-cran-lattice (0.23-1-1) ... Setting up r-cran-formatr (1.14-3) ... Setting up r-cran-xml (3.99-0.24-1) ... Setting up g++-16 (16.2.0-2) ... Setting up cpp (4:16.1.0-3) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up cmake (4.3.4-1) ... Setting up r-cran-rjson (0.2.23-1+b1) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-magrittr (2.0.5-1) ... Setting up r-cran-filelock (1.0.3-2) ... Setting up r-cran-memuse (4.2-3-1) ... Setting up r-cran-littler (0.3.23-1) ... Setting up r-cran-bh (1.90.0-1) ... Setting up r-cran-rcpp (1.1.2-1) ... Setting up r-cran-curl (8.0.0+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-rlang (1.3.0-1) ... Setting up r-cran-matrixstats (1.5.0-3) ... Setting up r-cran-sys (3.4.3-3) ... Setting up r-cran-withr (3.0.3+dfsg-1) ... Setting up r-cran-mime (0.13-2) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-lambda.r (1.2.4-3) ... Setting up r-cran-dbi (1.3.0-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-bit (4.6.0+dfsg-3) ... Setting up r-cran-xtable (1:1.8-8-1) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-bit64 (4.8.6-1) ... Setting up gcc (4:16.1.0-3) ... Setting up r-cran-askpass (1.2.1-3) ... Setting up r-cran-fastmap (1.2.0-3) ... Setting up r-cran-png (0.1-9-1) ... Setting up r-cran-jsonlite (2.0.0+dfsg-2) ... Setting up r-cran-pkgconfig (2.0.3-3) ... Setting up r-cran-utf8 (1.2.6-2) ... Setting up r-cran-stringi (1.8.9-1) ... Setting up r-cran-cpp11 (0.5.5-1) ... Setting up r-cran-futile.logger (1.4.9-2) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up r-cran-irlba (2.3.7-1) ... Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up r-cran-cachem (1.1.0-3) ... Setting up build-essential (12.12) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up r-cran-pillar (1.11.1+dfsg-1) ... Setting up r-cran-openssl (2.4.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.58.1-1) ... Setting up r-cran-stringr (1.6.0-1) ... Setting up r-bioc-biocparallel (1.46.0-1) ... Setting up r-bioc-matrixgenerics (1.24.0-1) ... Setting up r-cran-tibble (3.3.1+dfsg-2) ... Setting up r-cran-tidyselect (1.2.1+dfsg-3) ... Setting up r-cran-rsvd (1.0.5-2) ... Setting up r-cran-httr2 (1.3.0-1) ... Setting up r-bioc-biobase (2.72.0-1) ... Setting up r-cran-httr (1.4.8+dfsg-1) ... Setting up r-bioc-s4vectors (0.50.2+dfsg-1) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-purrr (1.2.2-1) ... Setting up r-cran-blob (1.3.0-1) ... Setting up r-cran-dplyr (1.2.1-2) ... Setting up r-bioc-iranges (2.46.0-1) ... Setting up r-bioc-assorthead (1.6.3+dfsg3-1) ... Setting up r-bioc-dir.expiry (1.20.0+dfsg-1) ... Setting up r-cran-rsqlite (2.4.6-1) ... Setting up r-bioc-sparsematrixstats (1.24.0+dfsg-1) ... Setting up r-bioc-graph (1.90.0-1) ... Setting up r-bioc-biocmake (1.4.0+dfsg-1) ... Setting up r-bioc-s4arrays (1.12.0+dfsg-1) ... Setting up r-bioc-rhdf5lib (2.0.0+dfsg2-1) ... Setting up r-bioc-seqinfo (1.2.0+dfsg-1) ... Setting up r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Setting up r-cran-tidyr (1.3.2-3) ... Setting up r-bioc-xvector (0.52.0-1) ... Setting up r-cran-dbplyr (2.6.0+dfsg-1) ... Setting up r-bioc-biocfilecache (3.2.0+dfsg-1) ... Setting up r-bioc-sparsearray (1.12.2+dfsg-1) ... Setting up r-bioc-genomicranges (1.64.0+dfsg-1) ... Setting up r-bioc-rhdf5 (2.56.0+dfsg-3) ... Setting up r-bioc-biostrings (2.80.2+dfsg-1) ... Setting up r-bioc-delayedarray (0.38.2+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Setting up r-bioc-h5mread (1.4.0+ds-1) ... Setting up r-bioc-keggrest (1.52.2+dfsg-1) ... Setting up r-bioc-annotationdbi (1.74.0-1) ... Setting up r-bioc-delayedmatrixstats (1.34.0+ds-1) ... Setting up r-bioc-annotate (1.90.0+dfsg-1) ... Setting up r-bioc-beachmat (2.28.0+dfsg-1) ... Setting up r-bioc-scaledmatrix (1.20.0+dfsg-1) ... Setting up r-bioc-hdf5array (1.40.0-1) ... Setting up r-bioc-singlecellexperiment (1.34.0+ds-1) ... Setting up r-bioc-gseabase (1.74.0+ds-1) ... Setting up r-bioc-biocsingular (1.28.0+ds-1+b1) ... Setting up libheif-plugin-dav1d:amd64 (1.23.3-1) ... Setting up libheif-plugin-libde265:amd64 (1.23.3-1) ... Setting up libheif1:amd64 (1.23.3-1) ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.2.31+dfsg1-1) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.2.31+dfsg1-1) ... Setting up libmagick++-7.q16-5:amd64 (8:7.1.2.31+dfsg1-1) ... Setting up r-cran-magick (2.9.1+dfsg-3) ... Setting up r-bioc-spatialexperiment (1.22.0+ds-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-5) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 2m20.1s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 2m20.1s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmphl3u1vja/./tmp/piuparts-depends-dummy.deb 2m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 2m20.1s DUMP: piuparts-depends-dummy install ok installed 2m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 2m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', 'piuparts-depends-dummy'] 2m20.1s DUMP: (Reading database ... 48601 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 2m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', 'piuparts-depends-dummy'] 2m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'clean'] 2m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'clean'] 2m20.3s DEBUG: Recording chroot state 2m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 2m24.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 2m27.4s DEBUG: No broken symlinks as far as we can find. 2m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy'] 2m28.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy'] 2m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy', 'r-bioc-gsva'] 2m28.4s DUMP: r-bioc-gsva: Installed: (none) Candidate: 2.6.6+ds-1 Version table: 2.6.6+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 2m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy', 'r-bioc-gsva'] 2m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.6.6+ds-1'] 2m30.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-gsva 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 3760 kB of archives. After this operation, 7639 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-gsva amd64 2.6.6+ds-1 [3760 kB] Fetched 3760 kB in 1s (5100 kB/s) Selecting previously unselected package r-bioc-gsva. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48601 files and directories currently installed.) Preparing to unpack .../r-bioc-gsva_2.6.6+ds-1_amd64.deb ... Unpacking r-bioc-gsva (2.6.6+ds-1) ... Setting up r-bioc-gsva (2.6.6+ds-1) ... 2m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.6.6+ds-1'] 2m30.4s INFO: Running scripts post_install 2m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_install_exceptions'] 2m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_install_exceptions'] 2m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'systemd-tmpfiles', '--cat-config'] 2m30.4s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 2m30.4s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'systemd-tmpfiles', '--cat-config'] 2m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'remove', 'r-bioc-gsva'] 2m31.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: cmake fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono imagemagick-7-common libarchive13t64 libblas3 libblosc1 libboost-dev libboost1.90-dev libcairo2 libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgraphite2-3 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libice6 libicu78 libjbig0 libjpeg62-turbo libjsoncpp26 liblapack3 liblcms2-2 liblerc4 liblqr-1-0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libngtcp2-crypto-ossl0 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpng16-16t64 libraw25 libreadline8t64 librhash1 libsharpyuv0 libsm6 libsnappy1v5 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocmake r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-httr2 r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-memuse r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils zip Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: r-bioc-gsva 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 7639 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48678 files and directories currently installed.) Removing r-bioc-gsva (2.6.6+ds-1) ... 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'remove', 'r-bioc-gsva'] 2m31.5s INFO: Reinstalling after remove 2m31.5s INFO: Running scripts pre_install 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_database-server'] 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_database-server'] 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_exceptions'] 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_exceptions'] 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_extras'] 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_extras'] 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture'] 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture'] 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy'] 2m31.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy'] 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy', 'r-bioc-gsva'] 2m31.6s DUMP: r-bioc-gsva: Installed: (none) Candidate: 2.6.6+ds-1 Version table: 2.6.6+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 2m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy', 'r-bioc-gsva'] 2m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.6.6+ds-1'] 2m32.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-gsva 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/3760 kB of archives. After this operation, 7639 kB of additional disk space will be used. Selecting previously unselected package r-bioc-gsva. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48601 files and directories currently installed.) Preparing to unpack .../r-bioc-gsva_2.6.6+ds-1_amd64.deb ... Unpacking r-bioc-gsva (2.6.6+ds-1) ... Setting up r-bioc-gsva (2.6.6+ds-1) ... 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.6.6+ds-1'] 2m32.8s INFO: Running scripts post_install 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_install_exceptions'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_install_exceptions'] 2m32.8s INFO: Running scripts pre_install 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_database-server'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_database-server'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_exceptions'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_exceptions'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_extras'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_extras'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy'] 2m32.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy'] 2m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy', 'r-bioc-gsva'] 2m32.9s DUMP: r-bioc-gsva: Installed: 2.6.6+ds-1 Candidate: 2.6.6+ds-1 Version table: *** 2.6.6+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-cache', 'policy', 'r-bioc-gsva'] 2m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-gsva=2.6.6+ds-1'] 2m34.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/3760 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48678 files and directories currently installed.) Preparing to unpack .../r-bioc-gsva_2.6.6+ds-1_amd64.deb ... Unpacking r-bioc-gsva (2.6.6+ds-1) over (2.6.6+ds-1) ... Setting up r-bioc-gsva (2.6.6+ds-1) ... 2m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-gsva=2.6.6+ds-1'] 2m34.2s INFO: Running scripts post_install 2m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_install_exceptions'] 2m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_install_exceptions'] 2m34.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 2m36.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 2m40.0s DEBUG: No broken symlinks as far as we can find. 2m42.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', '-ac', '--ignore-obsolete'] 2m50.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', '-ac', '--ignore-obsolete'] 2m50.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m50.3s DUMP: 0.17.5+b5 2m50.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m50.3s INFO: Running adequate version 0.17.5+b5 now. 2m50.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'r-bioc-gsva'] 2m50.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'r-bioc-gsva'] 2m50.3s INFO: Running scripts pre_remove 2m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m57.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_exceptions'] 2m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_exceptions'] 2m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_preseed_cleanup'] 2m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/pre_remove_preseed_cleanup'] 2m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m57.7s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed binutils binutils 2.47-6 install ok installed binutils-common:amd64 binutils-common 2.47-6 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47-6 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6+b2 install ok installed ca-certificates ca-certificates 20260816 install ok installed cmake cmake 4.3.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.2.0-2 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.2.0-2 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.1.0 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed dpkg-dev dpkg-dev 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.2.0-2 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.2.0-2 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-16 gcc-16 16.2.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-2 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.2.0-2 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed git git 1:2.55.0-1 install ok installed git-man git-man 1:2.55.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed imagemagick-7-common imagemagick-7-common 8:7.1.2.31+dfsg1-1 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libarchive13t64:amd64 libarchive13t64 3.8.9-1 install ok installed libasan8:amd64 libasan8 16.2.0-2 install ok installed libatomic1:amd64 libatomic1 16.2.0-2 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b2 install ok installed libbinutils:amd64 libbinutils 2.47-6 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libboost-dev:amd64 libboost-dev 1.90.0.2+nmu1 install ok installed libboost1.90-dev:amd64 libboost1.90-dev 1.90.0-6.1+b1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-5 install ok installed libc-dev-bin libc-dev-bin 2.43-5 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-5 install ok installed libc6:amd64 libc6 2.43-5 install ok installed libc6-dev:amd64 libc6-dev 2.43-5 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcc1-0:amd64 libcc1-0 16.2.0-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.47-6 install ok installed libctf0:amd64 libctf0 2.47-6 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.22.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.22.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdav1d7:amd64 libdav1d7 1.5.4-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libde265-0:amd64 libde265-0 1.1.2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libdpkg-perl libdpkg-perl 1.23.11 install ok installed liberror-perl liberror-perl 0.17030-1 install ok installed libexpat1:amd64 libexpat1 2.8.4-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.11-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.2.0-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-2 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.90.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.2.0-2 install ok installed libgprofng0:amd64 libgprofng0 2.47-6 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.23.3-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.23.3-1 install ok installed libheif1:amd64 libheif1 1.23.3-1 install ok installed libhnswlib-dev libhnswlib-dev 0.9.0-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhwasan0:amd64 libhwasan0 16.2.0-2 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libisl23:amd64 libisl23 0.28-1 install ok installed libitm1:amd64 libitm1 16.2.0-2 install ok installed libjansson4:amd64 libjansson4 2.15.1-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjsoncpp26:amd64 libjsoncpp26 1.9.8-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblcms2-2:amd64 liblcms2-2 2.19.1-1 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2.2+b1 install ok installed liblsan0:amd64 liblsan0 16.2.0-2 install ok installed libltdl7:amd64 libltdl7 2.6.2-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmagick++-7.q16-5:amd64 libmagick++-7.q16-5 8:7.1.2.31+dfsg1-1 install ok installed libmagickcore-7.q16-10:amd64 libmagickcore-7.q16-10 8:7.1.2.31+dfsg1-1 install ok installed libmagickwand-7.q16-10:amd64 libmagickwand-7.q16-10 8:7.1.2.31+dfsg1-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.4-1.1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.0-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.0-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.0-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.4 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.58-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-2 install ok installed libraw25:amd64 libraw25 0.22.1-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed librhash1:amd64 librhash1 1.4.6-1.1+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsframe3:amd64 libsframe3 2.47-6 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b2 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-2+b2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++-16-dev:amd64 libstdc++-16-dev 16.2.0-2 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-2 install ok installed libsystemd0:amd64 libsystemd0 262~rc2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.18+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtsan2:amd64 libtsan2 16.2.0-2 install ok installed libubsan1:amd64 libubsan1 16.2.0-2 install ok installed libudev1:amd64 libudev1 262~rc2-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libuv1t64:amd64 libuv1t64 1.52.1-4 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b2 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1+b2 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.1.13-1 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed make make 4.4.1-3 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl openssl 3.6.4-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed patch patch 2.8-2 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed procps procps 2:4.0.7-1 install ok installed r-base-core r-base-core 4.6.1-6 install ok installed r-bioc-annotate r-bioc-annotate 1.90.0+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.74.0-1 install ok installed r-bioc-assorthead r-bioc-assorthead 1.6.3+dfsg3-1 install ok installed r-bioc-beachmat r-bioc-beachmat 2.28.0+dfsg-1 install ok installed r-bioc-biobase r-bioc-biobase 2.72.0-1 install ok installed r-bioc-biocfilecache r-bioc-biocfilecache 3.2.0+dfsg-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-1 install ok installed r-bioc-biocmake r-bioc-biocmake 1.4.0+dfsg-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.46.0-1 install ok installed r-bioc-biocsingular r-bioc-biocsingular 1.28.0+ds-1+b1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.80.2+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.38.2+dfsg-1 install ok installed r-bioc-delayedmatrixstats r-bioc-delayedmatrixstats 1.34.0+ds-1 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.20.0+dfsg-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.64.0+dfsg-1 install ok installed r-bioc-graph r-bioc-graph 1.90.0-1 install ok installed r-bioc-gseabase r-bioc-gseabase 1.74.0+ds-1 install ok installed r-bioc-gsva r-bioc-gsva 2.6.6+ds-1 install ok installed r-bioc-h5mread r-bioc-h5mread 1.4.0+ds-1 install ok installed r-bioc-hdf5array r-bioc-hdf5array 1.40.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.46.0-1 install ok installed r-bioc-keggrest r-bioc-keggrest 1.52.2+dfsg-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.24.0-1 install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.56.0+dfsg-3 install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.24.1+dfsg-1 install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 2.0.0+dfsg2-1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.12.0+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.50.2+dfsg-1 install ok installed r-bioc-scaledmatrix r-bioc-scaledmatrix 1.20.0+dfsg-1 install ok installed r-bioc-seqinfo r-bioc-seqinfo 1.2.0+dfsg-1 install ok installed r-bioc-singlecellexperiment r-bioc-singlecellexperiment 1.34.0+ds-1 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.12.2+dfsg-1 install ok installed r-bioc-sparsematrixstats r-bioc-sparsematrixstats 1.24.0+dfsg-1 install ok installed r-bioc-spatialexperiment r-bioc-spatialexperiment 1.22.0+ds-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.42.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.52.0-1 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-3 install ok installed r-cran-bh r-cran-bh 1.90.0-1 install ok installed r-cran-bit r-cran-bit 4.6.0+dfsg-3 install ok installed r-cran-bit64 r-cran-bit64 4.8.6-1 install ok installed r-cran-blob r-cran-blob 1.3.0-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-3 install ok installed r-cran-cli r-cran-cli 3.6.6-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.5-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-2 install ok installed r-cran-curl r-cran-curl 8.0.0+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.3.0-1 install ok installed r-cran-dbplyr r-cran-dbplyr 2.6.0+dfsg-1 install ok installed r-cran-dplyr r-cran-dplyr 1.2.1-2 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-3 install ok installed r-cran-filelock r-cran-filelock 1.0.3-2 install ok installed r-cran-formatr r-cran-formatr 1.14-3 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.9-2 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-4 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-glue r-cran-glue 1.8.1-2 install ok installed r-cran-httr r-cran-httr 1.4.8+dfsg-1 install ok installed r-cran-httr2 r-cran-httr2 1.3.0-1 install ok installed r-cran-irlba r-cran-irlba 2.3.7-1 install ok installed r-cran-jsonlite r-cran-jsonlite 2.0.0+dfsg-2 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-3 install ok installed r-cran-lattice r-cran-lattice 0.23-1-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.23-1 install ok installed r-cran-magick r-cran-magick 2.9.1+dfsg-3 install ok installed r-cran-magrittr r-cran-magrittr 2.0.5-1 install ok installed r-cran-matrix r-cran-matrix 1.7-6-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-3 install ok installed r-cran-memoise r-cran-memoise 2.0.1-2 install ok installed r-cran-memuse r-cran-memuse 4.2-3-1 install ok installed r-cran-mime r-cran-mime 0.13-2 install ok installed r-cran-openssl r-cran-openssl 2.4.2+dfsg-1 install ok installed r-cran-pillar r-cran-pillar 1.11.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-3 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-png r-cran-png 0.1-9-1 install ok installed r-cran-purrr r-cran-purrr 1.2.2-1 install ok installed r-cran-r6 r-cran-r6 2.6.1-2 install ok installed r-cran-rcpp r-cran-rcpp 1.1.2-1 install ok installed r-cran-rjson r-cran-rjson 0.2.23-1+b1 install ok installed r-cran-rlang r-cran-rlang 1.3.0-1 install ok installed r-cran-rsqlite r-cran-rsqlite 2.4.6-1 install ok installed r-cran-rsvd r-cran-rsvd 1.0.5-2 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-stringi r-cran-stringi 1.8.9-1 install ok installed r-cran-stringr r-cran-stringr 1.6.0-1 install ok installed r-cran-sys r-cran-sys 3.4.3-3 install ok installed r-cran-tibble r-cran-tibble 3.3.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.2-3 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-3 install ok installed r-cran-utf8 r-cran-utf8 1.2.6-2 install ok installed r-cran-vctrs r-cran-vctrs 0.7.3-2 install ok installed r-cran-withr r-cran-withr 3.0.3+dfsg-1 install ok installed r-cran-xml r-cran-xml 3.99-0.24-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-8-1 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed unzip unzip 6.0-31 install ok installed util-linux util-linux 2.42.3-1 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xz-utils xz-utils 5.8.4-1 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 2m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'imagemagick-7-common', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'r-bioc-gsva'] 3m2.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man imagemagick-7-common libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl liberror-perl libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu78 libidn2-0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmpc3 libmpfr6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libraw25 libreadline8t64 librhash1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1t64 libstdc++-16-dev libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 linux-libc-dev make openssl patch perl perl-modules-5.42 r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocmake r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-httr2 r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-memuse r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable r-pkg-team-core-architecture readline-common unzip x11-common xdg-utils xz-utils zip 0 upgraded, 0 newly installed, 265 to remove and 0 not upgraded. After this operation, 1663 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48678 files and directories currently installed.) Removing r-bioc-gsva (2.6.6+ds-1) ... Removing r-bioc-hdf5array (1.40.0-1) ... Removing r-bioc-h5mread (1.4.0+ds-1) ... Removing r-bioc-rhdf5 (2.56.0+dfsg-3) ... Removing r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Removing build-essential (12.12) ... Removing g++ (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing dpkg-dev (1.23.11) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing bzip2 (1.0.8-6+b2) ... Removing r-bioc-biocsingular (1.28.0+ds-1+b1) ... Removing r-bioc-biocparallel (1.46.0-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-bioc-spatialexperiment (1.22.0+ds-1) ... Removing r-cran-magick (2.9.1+dfsg-3) ... Removing r-bioc-singlecellexperiment (1.34.0+ds-1) ... Removing r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Removing r-bioc-delayedmatrixstats (1.34.0+ds-1) ... Removing r-cran-rsvd (1.0.5-2) ... Removing r-bioc-sparsematrixstats (1.24.0+dfsg-1) ... Removing r-bioc-rhdf5lib (2.0.0+dfsg2-1) ... Removing r-bioc-biocmake (1.4.0+dfsg-1) ... Removing cmake (4.3.4-1) ... Removing cpp (4:16.1.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing libmagick++-7.q16-5:amd64 (8:7.1.2.31+dfsg1-1) ... Removing libmagickwand-7.q16-10:amd64 (8:7.1.2.31+dfsg1-1) ... Removing libmagickcore-7.q16-10:amd64 (8:7.1.2.31+dfsg1-1) ... Removing g++-16 (16.2.0-2) ... Removing g++-16-x86-64-linux-gnu (16.2.0-2) ... Removing r-bioc-beachmat (2.28.0+dfsg-1) ... Removing r-bioc-assorthead (1.6.3+dfsg3-1) ... Removing git (1:2.55.0-1) ... Removing git-man (1:2.55.0-1) ... Removing imagemagick-7-common (8:7.1.2.31+dfsg1-1) ... Removing libarchive13t64:amd64 (3.8.9-1) ... Removing r-cran-bh (1.90.0-1) ... Removing libboost-dev:amd64 (1.90.0.2+nmu1) ... Removing libboost1.90-dev:amd64 (1.90.0-6.1+b1) ... Removing libstdc++-16-dev:amd64 (16.2.0-2) ... Removing liblqr-1-0:amd64 (0.4.2-2.2+b1) ... Removing r-cran-irlba (2.3.7-1) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing libc6-dev:amd64 (2.43-5) ... Removing libc-dev-bin (2.43-5) ... Removing r-bioc-biocfilecache (3.2.0+dfsg-1) ... Removing r-cran-httr2 (1.3.0-1) ... Removing libcurl4-gnutls:amd64 (8.22.0-1) ... Removing libdpkg-perl (1.23.11) ... Removing liberror-perl (0.17030-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing libfftw3-double3:amd64 (3.3.11-1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing r-bioc-gseabase (1.74.0+ds-1) ... Removing libhnswlib-dev (0.9.0-2) ... Removing r-cran-dbplyr (2.6.0+dfsg-1) ... Removing r-cran-tidyr (1.3.2-3) ... Removing r-cran-stringr (1.6.0-1) ... Removing r-cran-stringi (1.8.9-1) ... Removing libraw25:amd64 (0.22.1-1) ... Removing libjsoncpp26:amd64 (1.9.8-2) ... Removing liblcms2-2:amd64 (2.19.1-1) ... Removing libltdl7:amd64 (2.6.2-2) ... Removing libopenjp2-7:amd64 (2.5.4-1.1) ... Removing librhash1:amd64 (1.4.6-1.1+b1) ... Removing libwebpmux3:amd64 (1.5.0-0.1+b2) ... Removing libwebpdemux2:amd64 (1.5.0-0.1+b2) ... Removing libsnappy1v5:amd64 (1.2.2-2+b2) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libuv1t64:amd64 (1.52.1-4) ... Removing r-bioc-annotate (1.90.0+dfsg-1) ... Removing r-cran-xml (3.99-0.24-1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing linux-libc-dev (7.1.13-1) ... Removing make (4.4.1-3) ... Removing patch (2.8-2) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing r-bioc-genomicranges (1.64.0+dfsg-1) ... Removing r-bioc-scaledmatrix (1.20.0+dfsg-1) ... Removing r-bioc-delayedarray (0.38.2+dfsg-1) ... Removing r-bioc-dir.expiry (1.20.0+dfsg-1) ... Removing r-bioc-graph (1.90.0-1) ... Removing r-cran-dplyr (1.2.1-2) ... Removing r-cran-tidyselect (1.2.1+dfsg-3) ... Removing r-cran-tibble (3.3.1+dfsg-2) ... Removing r-cran-purrr (1.2.2-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-filelock (1.0.3-2) ... Removing r-cran-futile.logger (1.4.9-2) ... Removing r-cran-lambda.r (1.2.4-3) ... Removing r-cran-formatr (1.14-3) ... Removing r-cran-futile.options (1.0.1-4) ... Removing r-cran-pillar (1.11.1+dfsg-1) ... Removing r-cran-magrittr (2.0.5-1) ... Removing r-cran-memuse (4.2-3-1) ... Removing r-cran-rjson (0.2.23-1+b1) ... Removing r-cran-utf8 (1.2.6-2) ... Removing r-cran-withr (3.0.3+dfsg-1) ... Removing r-cran-xtable (1:1.8-8-1) ... Removing xz-utils (5.8.4-1) ... Removing gcc-16 (16.2.0-2) ... Removing binutils (2.47-6) ... Removing libgprofng0:amd64 (2.47-6) ... Removing gcc-16-x86-64-linux-gnu (16.2.0-2) ... Removing binutils-x86-64-linux-gnu (2.47-6) ... Removing libctf0:amd64 (2.47-6) ... Removing libbinutils:amd64 (2.47-6) ... Removing binutils-common:amd64 (2.47-6) ... Removing r-bioc-sparsearray (1.12.2+dfsg-1) ... Removing r-bioc-s4arrays (1.12.0+dfsg-1) ... Removing r-cran-abind (1.4-8-1) ... Removing r-cran-matrix (1.7-6-1) ... Removing r-cran-rcpp (1.1.2-1) ... Removing cpp-16 (16.2.0-2) ... Removing cpp-16-x86-64-linux-gnu (16.2.0-2) ... Removing libgcc-16-dev:amd64 (16.2.0-2) ... Removing libasan8:amd64 (16.2.0-2) ... Removing libcc1-0:amd64 (16.2.0-2) ... Removing libctf-nobfd0:amd64 (2.47-6) ... Removing r-bioc-annotationdbi (1.74.0-1) ... Removing r-bioc-keggrest (1.52.2+dfsg-1) ... Removing r-bioc-biostrings (2.80.2+dfsg-1) ... Removing r-bioc-xvector (0.52.0-1) ... Removing libhwasan0:amd64 (16.2.0-2) ... Removing libisl23:amd64 (0.28-1) ... Removing libitm1:amd64 (16.2.0-2) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing liblsan0:amd64 (16.2.0-2) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing r-cran-png (0.1-9-1) ... Removing libquadmath0:amd64 (16.2.0-2) ... Removing libsframe3:amd64 (2.47-6) ... Removing libtsan2:amd64 (16.2.0-2) ... Removing libubsan1:amd64 (16.2.0-2) ... Removing r-bioc-biobase (2.72.0-1) ... Removing r-bioc-seqinfo (1.2.0+dfsg-1) ... Removing r-bioc-matrixgenerics (1.24.0-1) ... Removing r-cran-httr (1.4.8+dfsg-1) ... Removing r-cran-openssl (2.4.2+dfsg-1) ... Removing r-cran-askpass (1.2.1-3) ... Removing r-cran-rsqlite (2.4.6-1) ... Removing r-cran-bit64 (4.8.6-1) ... Removing r-cran-bit (4.6.0+dfsg-3) ... Removing r-cran-blob (1.3.0-1) ... Removing r-cran-memoise (2.0.1-2) ... Removing r-cran-cachem (1.1.0-3) ... Removing r-cran-vctrs (0.7.3-2) ... Removing r-cran-cpp11 (0.5.5-1) ... Removing r-cran-crayon (1.5.3-2) ... Removing r-cran-dbi (1.3.0-1) ... Removing r-cran-fastmap (1.2.0-3) ... Removing r-cran-glue (1.8.1-2) ... Removing r-cran-jsonlite (2.0.0+dfsg-2) ... Removing r-cran-lattice (0.23-1-1) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-littler (0.3.23-1) ... Removing r-cran-matrixstats (1.5.0-3) ... Removing r-cran-mime (0.13-2) ... Removing r-cran-pkgconfig (2.0.3-3) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-r6 (2.6.1-2) ... Removing r-cran-rlang (1.3.0-1) ... Removing r-cran-sys (3.4.3-3) ... Removing r-cran-curl (8.0.0+dfsg-1) ... Removing r-bioc-iranges (2.46.0-1) ... Removing r-bioc-s4vectors (0.50.2+dfsg-1) ... Removing r-cran-cli (3.6.6-1) ... Removing r-bioc-biocgenerics (0.58.1-1) ... Removing r-cran-generics (0.1.4-1) ... Removing r-pkg-team-core-architecture (20260707) ... Removing r-base-core (4.6.1-6) ... Removing ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.58.0-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.0-1) ... Removing libpango-1.0-0:amd64 (1.58.0-1) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.90.0-1) ... Removing libatomic1:amd64 (16.2.0-2) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcurl4t64:amd64 (8.22.0-1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b1) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing libgfortran5:amd64 (16.2.0-2) ... Removing libgomp1:amd64 (16.2.0-2) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebp7:amd64 (1.5.0-0.1+b2) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libthai-data (0.1.30-3) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing openssl (3.6.4-1) ... Removing readline-common (8.3-4) ... Removing unzip (6.0-31) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-16) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing libfreetype6:amd64 (2.14.3+dfsg-2) ... Removing libexpat1:amd64 (2.8.4-1) ... Removing libpng16-16t64:amd64 (1.6.58-1) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libheif1:amd64 (1.23.3-1) ... Removing libheif-plugin-libde265:amd64 (1.23.3-1) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing libde265-0:amd64 (1.1.2-1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Removing libheif-plugin-dav1d:amd64 (1.23.3-1) ... Removing libdav1d7:amd64 (1.5.4-1) ... Processing triggers for libc-bin (2.43-5) ... 3m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'imagemagick-7-common', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'r-bioc-gsva'] 3m2.2s INFO: Running scripts post_remove 3m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_remove_cleanup'] 3m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_remove_cleanup'] 3m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_remove_exceptions'] 3m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_remove_exceptions'] 3m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'imagemagick-7-common', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip'] 3m2.8s DUMP: (Reading database ... 5570 files and directories currently installed.) Purging configuration files for binutils (2.47-6) ... Purging configuration files for binutils-common:amd64 (2.47-6) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove build-essential which is not installed dpkg: warning: ignoring request to remove bzip2 which is not installed Purging configuration files for ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cmake which is not installed Purging configuration files for cpp (4:16.1.0-3) ... dpkg: warning: ignoring request to remove cpp-16 which is not installed dpkg: warning: ignoring request to remove cpp-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which is not installed Purging configuration files for dpkg-dev (1.23.11) ... Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove g++ which is not installed dpkg: warning: ignoring request to remove g++-16 which is not installed dpkg: warning: ignoring request to remove g++-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc which is not installed dpkg: warning: ignoring request to remove gcc-16 which is not installed dpkg: warning: ignoring request to remove gcc-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which is not installed Purging configuration files for git (1:2.55.0-1) ... dpkg: warning: ignoring request to remove git-man which is not installed Purging configuration files for imagemagick-7-common (8:7.1.2.31+dfsg1-1) ... dpkg: warning: ignoring request to remove libarchive13t64 which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libbinutils which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libblosc1 which is not installed dpkg: warning: ignoring request to remove libboost-dev which is not installed dpkg: warning: ignoring request to remove libboost1.90-dev which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcc1-0 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libctf-nobfd0 which is not installed dpkg: warning: ignoring request to remove libctf0 which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libde265-0 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdpkg-perl which is not installed dpkg: warning: ignoring request to remove liberror-perl which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfftw3-double3 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.90.0-1) ... dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgprofng0 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which is not installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which is not installed dpkg: warning: ignoring request to remove libheif1 which is not installed dpkg: warning: ignoring request to remove libhnswlib-dev which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libice6 which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libisl23 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjansson4 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libjsoncpp26 which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblcms2-2 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove liblqr-1-0 which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove libltdl7 which is not installed dpkg: warning: ignoring request to remove libmagick++-7.q16-5 which is not installed dpkg: warning: ignoring request to remove libmagickcore-7.q16-10 which is not installed dpkg: warning: ignoring request to remove libmagickwand-7.q16-10 which is not installed dpkg: warning: ignoring request to remove libmpc3 which is not installed dpkg: warning: ignoring request to remove libmpfr6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libopenjp2-7 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed dpkg: warning: ignoring request to remove libraw25 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove librhash1 which is not installed dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsframe3 which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libstdc++-16-dev which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpdemux2 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove make which is not installed Purging configuration files for openssl (3.6.4-1) ... dpkg: warning: ignoring request to remove patch which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed Purging configuration files for r-base-core (4.6.1-6) ... dpkg: warning: ignoring request to remove r-bioc-annotate which is not installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which is not installed dpkg: warning: ignoring request to remove r-bioc-assorthead which is not installed dpkg: warning: ignoring request to remove r-bioc-beachmat which is not installed dpkg: warning: ignoring request to remove r-bioc-biobase which is not installed dpkg: warning: ignoring request to remove r-bioc-biocfilecache which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocmake which is not installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which is not installed dpkg: warning: ignoring request to remove r-bioc-biocsingular which is not installed dpkg: warning: ignoring request to remove r-bioc-biostrings which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedmatrixstats which is not installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which is not installed dpkg: warning: ignoring request to remove r-bioc-graph which is not installed dpkg: warning: ignoring request to remove r-bioc-gseabase which is not installed dpkg: warning: ignoring request to remove r-bioc-h5mread which is not installed dpkg: warning: ignoring request to remove r-bioc-hdf5array which is not installed dpkg: warning: ignoring request to remove r-bioc-iranges which is not installed dpkg: warning: ignoring request to remove r-bioc-keggrest which is not installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5 which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which is not installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which is not installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which is not installed dpkg: warning: ignoring request to remove r-bioc-scaledmatrix which is not installed dpkg: warning: ignoring request to remove r-bioc-seqinfo which is not installed dpkg: warning: ignoring request to remove r-bioc-singlecellexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsematrixstats which is not installed dpkg: warning: ignoring request to remove r-bioc-spatialexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-xvector which is not installed dpkg: warning: ignoring request to remove r-cran-abind which is not installed dpkg: warning: ignoring request to remove r-cran-askpass which is not installed dpkg: warning: ignoring request to remove r-cran-bh which is not installed dpkg: warning: ignoring request to remove r-cran-bit which is not installed dpkg: warning: ignoring request to remove r-cran-bit64 which is not installed dpkg: warning: ignoring request to remove r-cran-blob which is not installed dpkg: warning: ignoring request to remove r-cran-cachem which is not installed dpkg: warning: ignoring request to remove r-cran-cli which is not installed dpkg: warning: ignoring request to remove r-cran-codetools which is not installed dpkg: warning: ignoring request to remove r-cran-cpp11 which is not installed dpkg: warning: ignoring request to remove r-cran-crayon which is not installed dpkg: warning: ignoring request to remove r-cran-curl which is not installed dpkg: warning: ignoring request to remove r-cran-dbi which is not installed dpkg: warning: ignoring request to remove r-cran-dbplyr which is not installed dpkg: warning: ignoring request to remove r-cran-dplyr which is not installed dpkg: warning: ignoring request to remove r-cran-fastmap which is not installed dpkg: warning: ignoring request to remove r-cran-filelock which is not installed dpkg: warning: ignoring request to remove r-cran-formatr which is not installed dpkg: warning: ignoring request to remove r-cran-futile.logger which is not installed dpkg: warning: ignoring request to remove r-cran-futile.options which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-glue which is not installed dpkg: warning: ignoring request to remove r-cran-httr which is not installed dpkg: warning: ignoring request to remove r-cran-httr2 which is not installed dpkg: warning: ignoring request to remove r-cran-irlba which is not installed dpkg: warning: ignoring request to remove r-cran-jsonlite which is not installed dpkg: warning: ignoring request to remove r-cran-lambda.r which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-lifecycle which is not installed dpkg: warning: ignoring request to remove r-cran-littler which is not installed dpkg: warning: ignoring request to remove r-cran-magick which is not installed dpkg: warning: ignoring request to remove r-cran-magrittr which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-matrixstats which is not installed dpkg: warning: ignoring request to remove r-cran-memoise which is not installed dpkg: warning: ignoring request to remove r-cran-memuse which is not installed dpkg: warning: ignoring request to remove r-cran-mime which is not installed dpkg: warning: ignoring request to remove r-cran-openssl which is not installed dpkg: warning: ignoring request to remove r-cran-pillar which is not installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which is not installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which is not installed dpkg: warning: ignoring request to remove r-cran-png which is not installed dpkg: warning: ignoring request to remove r-cran-purrr which is not installed dpkg: warning: ignoring request to remove r-cran-r6 which is not installed dpkg: warning: ignoring request to remove r-cran-rcpp which is not installed dpkg: warning: ignoring request to remove r-cran-rjson which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-rsqlite which is not installed dpkg: warning: ignoring request to remove r-cran-rsvd which is not installed dpkg: warning: ignoring request to remove r-cran-snow which is not installed dpkg: warning: ignoring request to remove r-cran-stringi which is not installed dpkg: warning: ignoring request to remove r-cran-stringr which is not installed dpkg: warning: ignoring request to remove r-cran-sys which is not installed dpkg: warning: ignoring request to remove r-cran-tibble which is not installed dpkg: warning: ignoring request to remove r-cran-tidyr which is not installed dpkg: warning: ignoring request to remove r-cran-tidyselect which is not installed dpkg: warning: ignoring request to remove r-cran-utf8 which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-cran-withr which is not installed dpkg: warning: ignoring request to remove r-cran-xml which is not installed dpkg: warning: ignoring request to remove r-cran-xtable which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove xz-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed 3m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'imagemagick-7-common', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1t64:amd64', 'libstdc++-16-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'linux-libc-dev', 'make', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-scaledmatrix', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip'] 3m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', 'r-bioc-gsva'] 3m2.8s DUMP: dpkg: warning: ignoring request to remove r-bioc-gsva which is not installed 3m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', 'r-bioc-gsva'] 3m2.8s INFO: Running scripts post_purge 3m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_purge_exceptions'] 3m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_purge_exceptions'] 3m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_purge_manual_cleanup'] 3m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_purge_manual_cleanup'] 3m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', '--pending'] 3m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--purge', '--pending'] 3m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--remove', '--pending'] 3m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg', '--remove', '--pending'] 3m2.8s INFO: Running scripts post_test 3m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_test_exceptions'] 3m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'tmp/scripts/post_test_exceptions'] 3m2.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 3m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 3m3.6s DEBUG: No broken symlinks as far as we can find. 3m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-divert', '--list'] 3m3.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 3m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'dpkg-divert', '--list'] 3m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'clean'] 3m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphl3u1vja', 'apt-get', 'clean'] 3m3.6s DEBUG: Recording chroot state 3m5.5s INFO: PASS: Installation and purging test. 3m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/shm'] 3m6.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/shm'] 3m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/console'] 3m6.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/console'] 3m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/ptmx'] 3m6.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/ptmx'] 3m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/pts'] 3m6.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/dev/pts'] 3m6.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/proc'] 3m6.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphl3u1vja/proc'] 3m6.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 3m6.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphl3u1vja'] 3m6.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmphl3u1vja 3m6.2s INFO: PASS: All tests. 3m6.2s INFO: piuparts run ends. ret=0 End: 2026-09-15 16:53:27 GMT