Start: 2025-04-09 18:47:32 GMT
Package: r-bioc-gviz
Version: 1.50.0+dfsg-2
Installed-Size: 7003
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.18), r-bioc-genomicranges (>= 1.17.20), r-bioc-xvector (>= 0.5.7), r-bioc-rtracklayer (>= 1.25.13), r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart (>= 2.11.0), r-bioc-annotationdbi (>= 1.27.5), r-bioc-biobase (>= 2.15.3), r-bioc-genomicfeatures (>= 1.17.22), r-bioc-ensembldb (>= 2.11.3), r-bioc-bsgenome (>= 1.33.1), r-bioc-biostrings (>= 2.33.11), r-bioc-biovizbase (>= 1.13.8), r-bioc-rsamtools (>= 1.17.28), r-cran-latticeextra (>= 0.6-26), r-cran-matrixstats (>= 0.8.14), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-biocgenerics (>= 0.11.3), r-cran-digest (>= 0.6.8)
Suggests: r-cran-xml2, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Description: Plotting data and annotation information along genomic coordinates
Homepage: https://bioconductor.org/packages/Gviz/
Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-gviz/r-bioc-gviz_1.50.0+dfsg-2_all.deb
Size: 5168228
MD5sum: 029eeceaaa1854df07b39611950b3a3c
SHA256: 875b10f5eeff1d46afe433790df9a7b5fba6b991c9dcb99752b7e15a0e0a9923
Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-gviz=1.50.0+dfsg-2
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-gviz=1.50.0+dfsg-2
0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxtllkphh
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxtllkphh
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/proc']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/proc']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/pts']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/pts']
0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/ptmx']
0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/ptmx']
0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/console']
0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/console']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/shm']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/shm']
0m0.5s DEBUG: sources.list:
deb http://deb.debian.org/debian/ sid main
0m0.5s DEBUG: Created policy-rc.d and chmodded it.
0m0.5s DEBUG: Created resolv.conf.
0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxtllkphh/tmp/scripts/
0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpxtllkphh/tmp/scripts/
0m0.5s INFO: Running scripts post_chroot_unpack
0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'update']
0m7.0s DUMP:
Get:1 http://deb.debian.org/debian sid InRelease [205 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7417 kB]
Fetched 17.8 MB in 5s (3344 kB/s)
Reading package lists...
0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'update']
0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-yf', 'dist-upgrade']
0m8.8s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
The following packages will be upgraded:
bash coreutils
2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 4512 kB of archives.
After this operation, 179 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.37-2 [1500 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.7-1 [3012 kB]
Fetched 4512 kB in 0s (35.9 MB/s)
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 4926 files and directories currently installed.)
Preparing to unpack .../bash_5.2.37-2_amd64.deb ...
Unpacking bash (5.2.37-2) over (5.2.37-1.1+b2) ...
Setting up bash (5.2.37-2) ...
update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 4925 files and directories currently installed.)
Preparing to unpack .../coreutils_9.7-1_amd64.deb ...
Unpacking coreutils (9.7-1) over (9.6-2) ...
Setting up coreutils (9.7-1) ...
Processing triggers for debianutils (5.21) ...
0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-yf', 'dist-upgrade']
0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m10.2s DUMP:
31e44ff00e610efb534d9d62a0a21228 -
0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m10.2s INFO: Running scripts post_setup
0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_dummy_users']
0m11.0s DUMP:
useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999
useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999
useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999
useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999
useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999
useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999
useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999
useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999
0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_dummy_users']
0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_fake-essential']
0m14.0s DUMP:
*** Adding fake essential packages ***
Reading package lists...
Building dependency tree...
Reading state information...
init-system-helpers is already the newest version (1.68).
The following additional packages will be installed:
libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps
sensible-utils ucf
Suggested packages:
dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks
Recommended packages:
libgpm2 psmisc linux-sysctl-defaults
The following NEW packages will be installed:
dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl
libtext-wrapi18n-perl procps sensible-utils ucf
0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded.
Need to get 1757 kB of archives.
After this operation, 4947 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0051 [42.8 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB]
Preconfiguring packages ...
Fetched 1757 kB in 1s (2502 kB/s)
Selecting previously unselected package libncursesw6:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 4925 files and directories currently installed.)
Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.5+20250216-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../6-ucf_3.0051_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0051) ...
Selecting previously unselected package dbconfig-common.
Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ...
Unpacking dbconfig-common (2.0.24) ...
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libproc2-0:amd64 (2:4.0.4-7) ...
Setting up libncursesw6:amd64 (6.5+20250216-2) ...
Setting up sensible-utils (0.0.24) ...
Setting up procps (2:4.0.4-7) ...
Setting up ucf (3.0051) ...
Setting up dbconfig-common (2.0.24) ...
Creating config file /etc/dbconfig-common/config with new version
Processing triggers for libc-bin (2.41-6) ...
0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_fake-essential']
0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_forbid_home']
0m14.0s DUMP:
Disabling /home
Adding 'local diversion of /home to /home.distrib'
0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_forbid_home']
0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_force-unsafe-io']
0m14.0s DUMP:
Enabling dpkg --force-unsafe-io.
Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
'/bin/sync' -> 'true'
0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_force-unsafe-io']
0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_minimize']
0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_minimize']
0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_squeeze-backports']
0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_squeeze-backports']
0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_zz_backports']
0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_setup_zz_backports']
0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'clean']
0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'clean']
0m14.1s DEBUG: Recording chroot state
0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m14.7s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-2
install ok installed bsdutils bsdutils 1:2.41-3
install ok installed coreutils coreutils 9.7-1
install ok installed dash dash 0.5.12-12
install ok installed dbconfig-common dbconfig-common 2.0.24
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblkid1:amd64 libblkid1 2.41-3
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-3
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4
install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libuuid1:amd64 libuuid1 2.41-3
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed login login 1:4.16.0-2+really2.41-3
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.41-3
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed procps procps 2:4.0.4-7
install ok installed sed sed 4.9-2
install ok installed sensible-utils sensible-utils 0.0.24
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed ucf ucf 3.0051
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-3
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-divert', '--list']
0m14.7s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-divert', '--list']
0m14.7s INFO: Running scripts is_testable
0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/is_testable_uninstallable']
0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/is_testable_uninstallable']
0m14.7s INFO: apt-cache does not know about any of the requested packages
0m14.7s INFO: Running scripts pre_test
0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_test_exceptions']
0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_test_exceptions']
0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_test_root_password']
0m14.7s DUMP:
New password: Retype new password: passwd: password updated successfully
0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_test_root_password']
0m14.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
0m15.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
0m16.1s DEBUG: No broken symlinks as far as we can find.
0m16.1s INFO: Running scripts pre_install
0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_database-server']
0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_database-server']
0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_exceptions']
0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_exceptions']
0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_extras']
0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_extras']
0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture']
0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture']
0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gviz=1.50.0+dfsg-2']
0m17.7s DUMP:
Package: r-bioc-gviz
Version: 1.50.0+dfsg-2
Installed-Size: 7003
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.18), r-bioc-genomicranges (>= 1.17.20), r-bioc-xvector (>= 0.5.7), r-bioc-rtracklayer (>= 1.25.13), r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart (>= 2.11.0), r-bioc-annotationdbi (>= 1.27.5), r-bioc-biobase (>= 2.15.3), r-bioc-genomicfeatures (>= 1.17.22), r-bioc-ensembldb (>= 2.11.3), r-bioc-bsgenome (>= 1.33.1), r-bioc-biostrings (>= 2.33.11), r-bioc-biovizbase (>= 1.13.8), r-bioc-rsamtools (>= 1.17.28), r-cran-latticeextra (>= 0.6-26), r-cran-matrixstats (>= 0.8.14), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-biocgenerics (>= 0.11.3), r-cran-digest (>= 0.6.8)
Suggests: r-cran-xml2, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Description-en: Plotting data and annotation information along genomic coordinates
Genomic data analyses requires integrated visualization of known
genomic information and new experimental data. Gviz uses the biomaRt and
the rtracklayer packages to perform live annotation queries to Ensembl
and UCSC and translates this to e.g. gene/transcript structures in
viewports of the grid graphics package. This results in genomic
information plotted together with your data.
Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0
Homepage: https://bioconductor.org/packages/Gviz/
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-gviz/r-bioc-gviz_1.50.0+dfsg-2_all.deb
Size: 5168228
MD5sum: 029eeceaaa1854df07b39611950b3a3c
SHA256: 875b10f5eeff1d46afe433790df9a7b5fba6b991c9dcb99752b7e15a0e0a9923
0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gviz=1.50.0+dfsg-2']
0m17.7s DEBUG: metapackage:
Package: piuparts-depends-dummy
Version: 0.invalid.0
Architecture: all
Maintainer: piuparts developers team <piuparts-devel@alioth-lists.debian.net>
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.18), r-bioc-genomicranges (>= 1.17.20), r-bioc-xvector (>= 0.5.7), r-bioc-rtracklayer (>= 1.25.13), r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart (>= 2.11.0), r-bioc-annotationdbi (>= 1.27.5), r-bioc-biobase (>= 2.15.3), r-bioc-genomicfeatures (>= 1.17.22), r-bioc-ensembldb (>= 2.11.3), r-bioc-bsgenome (>= 1.33.1), r-bioc-biostrings (>= 2.33.11), r-bioc-biovizbase (>= 1.13.8), r-bioc-rsamtools (>= 1.17.28), r-cran-latticeextra (>= 0.6-26), r-cran-matrixstats (>= 0.8.14), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-biocgenerics (>= 0.11.3), r-cran-digest (>= 0.6.8)
Description: Dummy package to satisfy dependencies - created by piuparts
This package was created automatically by piuparts and can safely be removed
0m17.7s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpehgtgi90/piuparts-depends-dummy']
0m17.7s DUMP:
dpkg-deb: warning: not checking contents of control area
dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpehgtgi90/piuparts-depends-dummy.deb'.
0m17.7s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpehgtgi90/piuparts-depends-dummy']
0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt']
0m17.7s DUMP:
3.0.0
0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt']
0m17.7s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpehgtgi90/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpxtllkphh/tmp
0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb']
1m9.1s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
ca-certificates fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
fonts-mathjax javascript-common libasan8 libatomic1 libblas3 libboost-dev
libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2
libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8
libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5
libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libhwasan0 libice6 libicu76 libidn2-0 libitm1 libjbig0
libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 liblua5.4-0
libnghttp2-14 libnghttp3-9 libnuma1 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libyaml-0-2
linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css
openssl pandoc pandoc-data r-base-core r-bioc-annotationdbi
r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache
r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart
r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray
r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics
r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment
r-bioc-ucsc.utils r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc
r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc
r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bslib
r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster
r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11
r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr
r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate
r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome
r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger
r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue
r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms
r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
r-cran-httr r-cran-httr2 r-cran-interp r-cran-isoband r-cran-jpeg
r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling
r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart
r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny
r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival
r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex
r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr
r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml readline-common
rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
apache2 | lighttpd | httpd libboost-doc libboost1.83-doc
libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
libboost-context1.83-dev libboost-contract1.83-dev
libboost-coroutine1.83-dev libboost-date-time1.83-dev
libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
libboost-serialization1.83-dev libboost-stacktrace1.83-dev
libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
libc-devtools glibc-doc manpages-dev low-memory-monitor gnutls-bin krb5-doc
krb5-user libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix
libjs-mathjax-doc libstdc++-14-doc tcl8.6 tk8.6 nodejs
texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc
texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php perl
python ruby libjs-katex citation-style-language-styles elpa-ess r-doc-info
| r-doc-pdf r-mathlib r-base-html r-bioc-go.db r-cran-runit
r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-testthat r-bioc-all
r-bioc-golubesets r-bioc-limma r-bioc-hdf5array r-bioc-pwalign r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel
r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-httptest2
r-cran-covr r-cran-biocmanager r-bioc-genefilter r-cran-lobstr
r-bioc-delayedmatrixstats r-bioc-ggbio r-bioc-gviz r-bioc-annotationhub
r-cran-r.utils r-bioc-edger r-bioc-txdbmaker r-cran-markdown r-bioc-dexseq
r-bioc-sparsematrixstats r-bioc-experimenthub r-bioc-rhdf5
r-bioc-singlecellexperiment r-cran-rmariadb r-bioc-snpstats r-cran-magick
r-cran-rmysql r-cran-polyclip r-cran-lubridate r-cran-sp
r-cran-scatterplot3d r-cran-sf r-cran-getopt r-cran-roxygen2 r-cran-inline
r-cran-rmpi r-cran-rlecuyer r-cran-plm r-cran-zoo readline-doc
Recommended packages:
manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs
node-jquery krb5-locales libldap-common publicsuffix libsasl2-modules
r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-roxygen2
r-cran-markdown r-cran-ff r-cran-microbenchmark r-cran-future
r-cran-thematic r-cran-fastmatch r-cran-devtools r-cran-tinytest
r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-rprojroot
r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd
r-cran-shinyjs r-cran-bench r-cran-brio r-cran-decor r-cran-desc
r-cran-lobstr r-cran-mockery r-cran-spelling r-cran-webutils r-cran-r.utils
r-cran-xts r-cran-zoo r-cran-rmariadb r-cran-rpostgresql r-cran-broom
r-cran-rmysql r-cran-pkgload r-cran-unitizer r-cran-rsvg r-cran-testit
r-cran-hexbin r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis
r-cran-quantreg r-cran-ragg r-cran-sf r-cran-svglite r-cran-vdiffr
r-cran-waldo r-cran-cairo r-cran-readr r-cran-clipr r-cran-docopt
r-cran-webfakes r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate
r-cran-rgl r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr
r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-diagrammer
r-cran-formattable r-cran-lubridate r-cran-nanotime r-cran-palmerpenguins
r-cran-units r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect
r-cran-downlit r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-dt
r-cran-here r-cran-pkgbuild r-cran-pkgdown r-cran-zeallot r-cran-remotes
r-cran-renv r-cran-xslt libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
ca-certificates fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
fonts-mathjax javascript-common libasan8 libatomic1 libblas3 libboost-dev
libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2
libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8
libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5
libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libhwasan0 libice6 libicu76 libidn2-0 libitm1 libjbig0
libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 liblua5.4-0
libnghttp2-14 libnghttp3-9 libnuma1 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libyaml-0-2
linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css
openssl pandoc pandoc-data piuparts-depends-dummy r-base-core
r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase
r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome
r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass
r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-checkmate
r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace
r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table
r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest
r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr
r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options
r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable
r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools
r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-interp
r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr
r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice
r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet
r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr
r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales
r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr
r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite
r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml
readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded.
Need to get 305 MB/305 MB of archives.
After this operation, 967 MB of additional disk space will be used.
Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [902 B]
Get:2 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.0-1 [1491 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 javascript-common all 12 [5236 B]
Get:18 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-19 [2725 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B]
Get:20 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB]
Get:22 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB]
Get:23 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB]
Get:24 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB]
Get:25 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB]
Get:26 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB]
Get:27 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB]
Get:28 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB]
Get:29 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-6 [57.0 kB]
Get:30 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.21-1 [2542 kB]
Get:31 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB]
Get:32 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB]
Get:33 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-6 [1988 kB]
Get:34 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB]
Get:35 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB]
Get:36 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B]
Get:37 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get:38 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get:39 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get:40 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get:41 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get:42 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
Get:43 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get:44 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get:45 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get:46 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB]
Get:47 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB]
Get:48 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get:49 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get:50 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get:51 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-5 [9316 B]
Get:52 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get:53 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get:54 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:55 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get:56 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:57 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:58 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get:59 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:60 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:61 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:62 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get:63 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:64 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:65 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:66 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:67 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:68 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB]
Get:69 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get:70 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get:71 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get:72 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB]
Get:73 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB]
Get:74 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get:75 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB]
Get:76 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB]
Get:77 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get:78 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-3 [9721 kB]
Get:79 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get:80 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get:81 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB]
Get:82 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB]
Get:83 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB]
Get:84 http://deb.debian.org/debian sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB]
Get:85 http://deb.debian.org/debian sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB]
Get:86 http://deb.debian.org/debian sid/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB]
Get:87 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:88 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB]
Get:89 http://deb.debian.org/debian sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB]
Get:90 http://deb.debian.org/debian sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B]
Get:91 http://deb.debian.org/debian sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB]
Get:92 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:93 http://deb.debian.org/debian sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB]
Get:94 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:95 http://deb.debian.org/debian sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB]
Get:96 http://deb.debian.org/debian sid/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB]
Get:97 http://deb.debian.org/debian sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB]
Get:98 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get:99 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get:100 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.7-1+b2 [147 kB]
Get:101 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB]
Get:102 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:103 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get:104 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB]
Get:105 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB]
Get:106 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB]
Get:107 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB]
Get:108 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB]
Get:109 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:110 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get:111 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB]
Get:112 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get:113 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get:114 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB]
Get:115 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB]
Get:116 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB]
Get:117 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get:118 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get:119 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get:120 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB]
Get:121 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB]
Get:122 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get:123 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get:124 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB]
Get:125 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB]
Get:126 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get:127 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.3-1+b1 [28.3 MB]
Get:128 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.21-1 [107 kB]
Get:129 http://deb.debian.org/debian sid/main amd64 littler all 0.3.21-1 [16.9 kB]
Get:130 http://deb.debian.org/debian sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB]
Get:131 http://deb.debian.org/debian sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get:132 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB]
Get:133 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.1.11.1-3 [459 kB]
Get:134 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB]
Get:135 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB]
Get:136 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.66.0-2 [2316 kB]
Get:137 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB]
Get:138 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.40.1-2 [2309 kB]
Get:139 http://deb.debian.org/debian sid/main amd64 r-cran-dbi all 1.2.3-1 [852 kB]
Get:140 http://deb.debian.org/debian sid/main amd64 r-cran-bit amd64 4.6.0+dfsg-1 [455 kB]
Get:141 http://deb.debian.org/debian sid/main amd64 r-cran-bit64 amd64 4.6.0-1-1 [481 kB]
Get:142 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.5-1 [1712 kB]
Get:143 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB]
Get:144 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB]
Get:145 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:146 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB]
Get:147 http://deb.debian.org/debian sid/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB]
Get:148 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB]
Get:149 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB]
Get:150 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:151 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:152 http://deb.debian.org/debian sid/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:153 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB]
Get:154 http://deb.debian.org/debian sid/main amd64 r-cran-rsqlite amd64 2.3.9-1 [1216 kB]
Get:155 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 6.2.1+dfsg-1 [195 kB]
Get:156 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB]
Get:157 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB]
Get:158 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB]
Get:159 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB]
Get:160 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB]
Get:161 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-1 [106 kB]
Get:162 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
Get:163 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB]
Get:164 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get:165 http://deb.debian.org/debian sid/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B]
Get:166 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
Get:167 http://deb.debian.org/debian sid/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB]
Get:168 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
Get:169 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB]
Get:170 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-1 [165 kB]
Get:171 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB]
Get:172 http://deb.debian.org/debian sid/main amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [184 kB]
Get:173 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationdbi all 1.68.0-2 [4703 kB]
Get:174 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2092 kB]
Get:175 http://deb.debian.org/debian sid/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB]
Get:176 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [246 kB]
Get:177 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB]
Get:178 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB]
Get:179 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB]
Get:180 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
Get:181 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.6-1 [629 kB]
Get:182 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB]
Get:183 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get:184 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB]
Get:185 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB]
Get:186 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.0.4-1 [556 kB]
Get:187 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.4-1+b1 [896 kB]
Get:188 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB]
Get:189 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB]
Get:190 http://deb.debian.org/debian sid/main amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1247 kB]
Get:191 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB]
Get:192 http://deb.debian.org/debian sid/main amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [302 kB]
Get:193 http://deb.debian.org/debian sid/main amd64 r-bioc-biocio all 1.16.0+dfsg-2 [210 kB]
Get:194 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-2 [152 kB]
Get:195 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:196 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:197 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:198 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:199 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB]
Get:200 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B]
Get:201 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.40.0-2 [1326 kB]
Get:202 http://deb.debian.org/debian sid/main amd64 r-cran-hms all 1.1.3-1 [104 kB]
Get:203 http://deb.debian.org/debian sid/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
Get:204 http://deb.debian.org/debian sid/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB]
Get:205 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB]
Get:206 http://deb.debian.org/debian sid/main amd64 r-cran-httr2 all 1.1.1-1 [765 kB]
Get:207 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB]
Get:208 http://deb.debian.org/debian sid/main amd64 r-cran-xml2 amd64 1.3.8-1 [326 kB]
Get:209 http://deb.debian.org/debian sid/main amd64 r-bioc-biomart all 2.62.1+dfsg-1 [461 kB]
Get:210 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB]
Get:211 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB]
Get:212 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB]
Get:213 http://deb.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.1-1 [237 kB]
Get:214 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:215 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB]
Get:216 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB]
Get:217 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB]
Get:218 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB]
Get:219 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB]
Get:220 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB]
Get:221 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.168-1 [2329 kB]
Get:222 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB]
Get:223 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-3-1 [3378 kB]
Get:224 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB]
Get:225 http://deb.debian.org/debian sid/main amd64 r-cran-cluster amd64 2.1.8.1-1 [585 kB]
Get:226 http://deb.debian.org/debian sid/main amd64 r-cran-survival amd64 3.8-3-1 [8265 kB]
Get:227 http://deb.debian.org/debian sid/main amd64 r-cran-rpart amd64 4.1.24-1 [689 kB]
Get:228 http://deb.debian.org/debian sid/main amd64 r-cran-nnet amd64 7.3-20-1 [112 kB]
Get:229 http://deb.debian.org/debian sid/main amd64 r-cran-foreign amd64 0.8.90-1 [253 kB]
Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-gridextra all 2.3-3 [1024 kB]
Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2105 kB]
Get:232 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 1.0.3-1 [114 kB]
Get:233 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.51+dfsg-1 [575 kB]
Get:234 http://deb.debian.org/debian sid/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB]
Get:235 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB]
Get:236 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.50+dfsg-1 [843 kB]
Get:237 http://deb.debian.org/debian sid/main amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
Get:238 http://deb.debian.org/debian sid/main amd64 r-cran-checkmate amd64 2.3.2-1 [705 kB]
Get:239 http://deb.debian.org/debian sid/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB]
Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB]
Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB]
Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 1.6.5+dfsg-1 [248 kB]
Get:243 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB]
Get:244 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.9.0+dfsg-1 [4664 kB]
Get:245 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.3-1 [1311 kB]
Get:246 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.56-1 [149 kB]
Get:247 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB]
Get:248 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.14-1 [2080 kB]
Get:249 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.4.1+dfsg-1 [141 kB]
Get:250 http://deb.debian.org/debian sid/main amd64 r-cran-promises amd64 1.3.2+dfsg-1 [288 kB]
Get:251 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB]
Get:252 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:253 http://deb.debian.org/debian sid/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB]
Get:254 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 1.9.5-1 [123 kB]
Get:255 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.10.0+dfsg-2 [3139 kB]
Get:256 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1473 kB]
Get:257 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
Get:258 http://deb.debian.org/debian sid/main amd64 r-cran-rstudioapi all 0.17.1-1 [307 kB]
Get:259 http://deb.debian.org/debian sid/main amd64 r-cran-htmltable all 2.4.3-1 [389 kB]
Get:260 http://deb.debian.org/debian sid/main amd64 r-cran-viridis all 0.6.5-1 [2991 kB]
Get:261 http://deb.debian.org/debian sid/main amd64 r-cran-formula all 1.2-5-1 [158 kB]
Get:262 http://deb.debian.org/debian sid/main amd64 r-cran-chron amd64 2.3-62-1 [196 kB]
Get:263 http://deb.debian.org/debian sid/main amd64 r-cran-jpeg amd64 0.1-10-1 [30.8 kB]
Get:264 http://deb.debian.org/debian sid/main amd64 r-cran-deldir amd64 2.0-4-1 [286 kB]
Get:265 http://deb.debian.org/debian sid/main amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1411 kB]
Get:266 http://deb.debian.org/debian sid/main amd64 r-cran-interp amd64 1.1-6-1 [1445 kB]
Get:267 http://deb.debian.org/debian sid/main amd64 r-cran-latticeextra all 0.6-30-1 [2194 kB]
Get:268 http://deb.debian.org/debian sid/main amd64 r-cran-acepack amd64 1.6.1-1 [83.9 kB]
Get:269 http://deb.debian.org/debian sid/main amd64 r-cran-hmisc amd64 5.2-3-1 [3603 kB]
Get:270 http://deb.debian.org/debian sid/main amd64 r-cran-dichromat all 1:2.0-0.1-1 [149 kB]
Get:271 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB]
Get:272 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.18.1-1 [449 kB]
Get:273 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB]
Get:274 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [702 kB]
Get:275 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1372 kB]
Get:276 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2076 kB]
Get:277 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1116 kB]
Get:278 http://deb.debian.org/debian sid/main amd64 r-cran-bitops amd64 1.0-9-1 [30.7 kB]
Get:279 http://deb.debian.org/debian sid/main amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1335 kB]
Get:280 http://deb.debian.org/debian sid/main amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3600 kB]
Get:281 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2161 kB]
Get:282 http://deb.debian.org/debian sid/main amd64 r-cran-xml amd64 3.99-0.18-1 [1762 kB]
Get:283 http://deb.debian.org/debian sid/main amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [799 kB]
Get:284 http://deb.debian.org/debian sid/main amd64 r-cran-rjson amd64 0.2.23-1 [100.0 kB]
Get:285 http://deb.debian.org/debian sid/main amd64 r-cran-restfulr amd64 0.0.15-1 [382 kB]
Get:286 http://deb.debian.org/debian sid/main amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5213 kB]
Get:287 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [930 kB]
Get:288 http://deb.debian.org/debian sid/main amd64 r-bioc-bsgenome all 1.74.0-2 [7011 kB]
Get:289 http://deb.debian.org/debian sid/main amd64 r-bioc-variantannotation amd64 1.52.0-2 [3549 kB]
Get:290 http://deb.debian.org/debian sid/main amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB]
Get:291 http://deb.debian.org/debian sid/main amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1510 kB]
Get:292 http://deb.debian.org/debian sid/main amd64 r-bioc-biovizbase amd64 1.54.0-2 [2852 kB]
Preconfiguring packages ...
Fetched 305 MB in 23s (13.5 MB/s)
Selecting previously unselected package readline-common.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 5473 files and directories currently installed.)
Preparing to unpack .../000-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package openssl.
Preparing to unpack .../001-openssl_3.5.0-1_amd64.deb ...
Unpacking openssl (3.5.0-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../002-ca-certificates_20241223_all.deb ...
Unpacking ca-certificates (20241223) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../003-libexpat1_2.7.1-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.7.1-1) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../004-libbrotli1_1.1.0-2+b7_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b7) ...
Selecting previously unselected package libpng16-16t64:amd64.
Preparing to unpack .../005-libpng16-16t64_1.6.47-1.1_amd64.deb ...
Unpacking libpng16-16t64:amd64 (1.6.47-1.1) ...
Selecting previously unselected package libfreetype6:amd64.
Preparing to unpack .../006-libfreetype6_2.13.3+dfsg-1_amd64.deb ...
Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../007-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../008-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../009-fontconfig-config_2.15.0-2.3_amd64.deb ...
Unpacking fontconfig-config (2.15.0-2.3) ...
Selecting previously unselected package libfontconfig1:amd64.
Preparing to unpack .../010-libfontconfig1_2.15.0-2.3_amd64.deb ...
Unpacking libfontconfig1:amd64 (2.15.0-2.3) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../011-fontconfig_2.15.0-2.3_amd64.deb ...
Unpacking fontconfig (2.15.0-2.3) ...
Selecting previously unselected package fonts-font-awesome.
Preparing to unpack .../012-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
Selecting previously unselected package fonts-glyphicons-halflings.
Preparing to unpack .../013-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
Selecting previously unselected package fonts-mathjax.
Preparing to unpack .../014-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
Selecting previously unselected package javascript-common.
Preparing to unpack .../015-javascript-common_12_all.deb ...
Unpacking javascript-common (12) ...
Selecting previously unselected package libasan8:amd64.
Preparing to unpack .../016-libasan8_14.2.0-19_amd64.deb ...
Unpacking libasan8:amd64 (14.2.0-19) ...
Selecting previously unselected package libatomic1:amd64.
Preparing to unpack .../017-libatomic1_14.2.0-19_amd64.deb ...
Unpacking libatomic1:amd64 (14.2.0-19) ...
Selecting previously unselected package libblas3:amd64.
Preparing to unpack .../018-libblas3_3.12.1-2_amd64.deb ...
Unpacking libblas3:amd64 (3.12.1-2) ...
Selecting previously unselected package libgomp1:amd64.
Preparing to unpack .../019-libgomp1_14.2.0-19_amd64.deb ...
Unpacking libgomp1:amd64 (14.2.0-19) ...
Selecting previously unselected package libitm1:amd64.
Preparing to unpack .../020-libitm1_14.2.0-19_amd64.deb ...
Unpacking libitm1:amd64 (14.2.0-19) ...
Selecting previously unselected package liblsan0:amd64.
Preparing to unpack .../021-liblsan0_14.2.0-19_amd64.deb ...
Unpacking liblsan0:amd64 (14.2.0-19) ...
Selecting previously unselected package libtsan2:amd64.
Preparing to unpack .../022-libtsan2_14.2.0-19_amd64.deb ...
Unpacking libtsan2:amd64 (14.2.0-19) ...
Selecting previously unselected package libubsan1:amd64.
Preparing to unpack .../023-libubsan1_14.2.0-19_amd64.deb ...
Unpacking libubsan1:amd64 (14.2.0-19) ...
Selecting previously unselected package libhwasan0:amd64.
Preparing to unpack .../024-libhwasan0_14.2.0-19_amd64.deb ...
Unpacking libhwasan0:amd64 (14.2.0-19) ...
Selecting previously unselected package libquadmath0:amd64.
Preparing to unpack .../025-libquadmath0_14.2.0-19_amd64.deb ...
Unpacking libquadmath0:amd64 (14.2.0-19) ...
Selecting previously unselected package libgcc-14-dev:amd64.
Preparing to unpack .../026-libgcc-14-dev_14.2.0-19_amd64.deb ...
Unpacking libgcc-14-dev:amd64 (14.2.0-19) ...
Selecting previously unselected package libc-dev-bin.
Preparing to unpack .../027-libc-dev-bin_2.41-6_amd64.deb ...
Unpacking libc-dev-bin (2.41-6) ...
Selecting previously unselected package linux-libc-dev.
Preparing to unpack .../028-linux-libc-dev_6.12.21-1_all.deb ...
Unpacking linux-libc-dev (6.12.21-1) ...
Selecting previously unselected package libcrypt-dev:amd64.
Preparing to unpack .../029-libcrypt-dev_1%3a4.4.38-1_amd64.deb ...
Unpacking libcrypt-dev:amd64 (1:4.4.38-1) ...
Selecting previously unselected package rpcsvc-proto.
Preparing to unpack .../030-rpcsvc-proto_1.4.3-1_amd64.deb ...
Unpacking rpcsvc-proto (1.4.3-1) ...
Selecting previously unselected package libc6-dev:amd64.
Preparing to unpack .../031-libc6-dev_2.41-6_amd64.deb ...
Unpacking libc6-dev:amd64 (2.41-6) ...
Selecting previously unselected package libstdc++-14-dev:amd64.
Preparing to unpack .../032-libstdc++-14-dev_14.2.0-19_amd64.deb ...
Unpacking libstdc++-14-dev:amd64 (14.2.0-19) ...
Selecting previously unselected package libboost1.83-dev:amd64.
Preparing to unpack .../033-libboost1.83-dev_1.83.0-4.2_amd64.deb ...
Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ...
Selecting previously unselected package libboost-dev:amd64.
Preparing to unpack .../034-libboost-dev_1.83.0.2+b2_amd64.deb ...
Unpacking libboost-dev:amd64 (1.83.0.2+b2) ...
Selecting previously unselected package libpixman-1-0:amd64.
Preparing to unpack .../035-libpixman-1-0_0.44.0-3_amd64.deb ...
Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../036-libxau6_1%3a1.0.11-1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../037-libxdmcp6_1%3a1.1.5-1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../038-libxcb1_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb1:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../039-libx11-data_2%3a1.8.12-1_all.deb ...
Unpacking libx11-data (2:1.8.12-1) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../040-libx11-6_2%3a1.8.12-1_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.8.12-1) ...
Selecting previously unselected package libxcb-render0:amd64.
Preparing to unpack .../041-libxcb-render0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:amd64.
Preparing to unpack .../042-libxcb-shm0_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:amd64.
Preparing to unpack .../043-libxext6_2%3a1.3.4-1+b3_amd64.deb ...
Unpacking libxext6:amd64 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxrender1:amd64.
Preparing to unpack .../044-libxrender1_1%3a0.9.12-1_amd64.deb ...
Unpacking libxrender1:amd64 (1:0.9.12-1) ...
Selecting previously unselected package libcairo2:amd64.
Preparing to unpack .../045-libcairo2_1.18.4-1+b1_amd64.deb ...
Unpacking libcairo2:amd64 (1.18.4-1+b1) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../046-libcom-err2_1.47.2-1+b1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1+b1) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../047-libkrb5support0_1.21.3-5_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.21.3-5) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../048-libk5crypto3_1.21.3-5_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.21.3-5) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../049-libkeyutils1_1.6.3-5_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-5) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../050-libkrb5-3_1.21.3-5_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.21.3-5) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../051-libgssapi-krb5-2_1.21.3-5_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ...
Selecting previously unselected package libunistring5:amd64.
Preparing to unpack .../052-libunistring5_1.3-2_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-2) ...
Selecting previously unselected package libidn2-0:amd64.
Preparing to unpack .../053-libidn2-0_2.3.8-2_amd64.deb ...
Unpacking libidn2-0:amd64 (2.3.8-2) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../054-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../055-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Selecting previously unselected package libldap2:amd64.
Preparing to unpack .../056-libldap2_2.6.9+dfsg-2_amd64.deb ...
Unpacking libldap2:amd64 (2.6.9+dfsg-2) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../057-libnghttp2-14_1.64.0-1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:amd64.
Preparing to unpack .../058-libnghttp3-9_1.8.0-1_amd64.deb ...
Unpacking libnghttp3-9:amd64 (1.8.0-1) ...
Selecting previously unselected package libpsl5t64:amd64.
Preparing to unpack .../059-libpsl5t64_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package libffi8:amd64.
Preparing to unpack .../060-libffi8_3.4.7-1_amd64.deb ...
Unpacking libffi8:amd64 (3.4.7-1) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../061-libp11-kit0_0.25.5-3_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:amd64.
Preparing to unpack .../062-libtasn1-6_4.20.0-2_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:amd64.
Preparing to unpack .../063-libgnutls30t64_3.8.9-2_amd64.deb ...
Unpacking libgnutls30t64:amd64 (3.8.9-2) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../064-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../065-libssh2-1t64_1.11.1-1_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:amd64.
Preparing to unpack .../066-libcurl4t64_8.13.0-1_amd64.deb ...
Unpacking libcurl4t64:amd64 (8.13.0-1) ...
Selecting previously unselected package libdatrie1:amd64.
Preparing to unpack .../067-libdatrie1_0.2.13-3+b1_amd64.deb ...
Unpacking libdatrie1:amd64 (0.2.13-3+b1) ...
Selecting previously unselected package libdeflate0:amd64.
Preparing to unpack .../068-libdeflate0_1.23-1+b1_amd64.deb ...
Unpacking libdeflate0:amd64 (1.23-1+b1) ...
Selecting previously unselected package libfribidi0:amd64.
Preparing to unpack .../069-libfribidi0_1.0.16-1_amd64.deb ...
Unpacking libfribidi0:amd64 (1.0.16-1) ...
Selecting previously unselected package libgfortran5:amd64.
Preparing to unpack .../070-libgfortran5_14.2.0-19_amd64.deb ...
Unpacking libgfortran5:amd64 (14.2.0-19) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../071-libglib2.0-0t64_2.84.1-1_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.84.1-1) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../072-libgraphite2-3_1.3.14-2+b1_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../073-libharfbuzz0b_10.2.0-1+b1_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../074-x11-common_1%3a7.7+24_all.deb ...
Unpacking x11-common (1:7.7+24) ...
Selecting previously unselected package libice6:amd64.
Preparing to unpack .../075-libice6_2%3a1.1.1-1_amd64.deb ...
Unpacking libice6:amd64 (2:1.1.1-1) ...
Selecting previously unselected package libicu76:amd64.
Preparing to unpack .../076-libicu76_76.1-3_amd64.deb ...
Unpacking libicu76:amd64 (76.1-3) ...
Selecting previously unselected package libjbig0:amd64.
Preparing to unpack .../077-libjbig0_2.1-6.1+b2_amd64.deb ...
Unpacking libjbig0:amd64 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:amd64.
Preparing to unpack .../078-libjpeg62-turbo_1%3a2.1.5-3.1_amd64.deb ...
Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Selecting previously unselected package libjs-bootstrap.
Preparing to unpack .../079-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
Selecting previously unselected package libjs-popper.js.
Preparing to unpack .../080-libjs-popper.js_1.16.1+ds-6_all.deb ...
Unpacking libjs-popper.js (1.16.1+ds-6) ...
Selecting previously unselected package libjs-bootstrap4.
Preparing to unpack .../081-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
Selecting previously unselected package libjs-d3.
Preparing to unpack .../082-libjs-d3_3.5.17-4_all.deb ...
Unpacking libjs-d3 (3.5.17-4) ...
Selecting previously unselected package libjs-es5-shim.
Preparing to unpack .../083-libjs-es5-shim_4.6.7-2_all.deb ...
Unpacking libjs-es5-shim (4.6.7-2) ...
Selecting previously unselected package libjs-highlight.js.
Preparing to unpack .../084-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../085-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Selecting previously unselected package libjs-jquery-datatables.
Preparing to unpack .../086-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
Selecting previously unselected package libjs-sifter.js.
Preparing to unpack .../087-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
Selecting previously unselected package libjs-microplugin.js.
Preparing to unpack .../088-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
Selecting previously unselected package libjs-jquery-selectize.js.
Preparing to unpack .../089-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
Selecting previously unselected package libjs-jquery-ui.
Preparing to unpack .../090-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
Selecting previously unselected package libjs-json.
Preparing to unpack .../091-libjs-json_0~20221030+~1.0.8-1_all.deb ...
Unpacking libjs-json (0~20221030+~1.0.8-1) ...
Selecting previously unselected package libjs-mathjax.
Preparing to unpack .../092-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
Selecting previously unselected package libjs-modernizr.
Preparing to unpack .../093-libjs-modernizr_3.13.0-0.1_all.deb ...
Unpacking libjs-modernizr (3.13.0-0.1) ...
Selecting previously unselected package libjs-prettify.
Preparing to unpack .../094-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
Preparing to unpack .../095-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
Selecting previously unselected package liblapack3:amd64.
Preparing to unpack .../096-liblapack3_3.12.1-2_amd64.deb ...
Unpacking liblapack3:amd64 (3.12.1-2) ...
Selecting previously unselected package liblerc4:amd64.
Preparing to unpack .../097-liblerc4_4.0.0+ds-5_amd64.deb ...
Unpacking liblerc4:amd64 (4.0.0+ds-5) ...
Selecting previously unselected package liblua5.4-0:amd64.
Preparing to unpack .../098-liblua5.4-0_5.4.7-1+b2_amd64.deb ...
Unpacking liblua5.4-0:amd64 (5.4.7-1+b2) ...
Selecting previously unselected package libnuma1:amd64.
Preparing to unpack .../099-libnuma1_2.0.18-1+b1_amd64.deb ...
Unpacking libnuma1:amd64 (2.0.18-1+b1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../100-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libthai0:amd64.
Preparing to unpack .../101-libthai0_0.1.29-2+b1_amd64.deb ...
Unpacking libthai0:amd64 (0.1.29-2+b1) ...
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../102-libpango-1.0-0_1.56.3-1_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.56.3-1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../103-libpangoft2-1.0-0_1.56.3-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../104-libpangocairo-1.0-0_1.56.3-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Selecting previously unselected package libpaper2:amd64.
Preparing to unpack .../105-libpaper2_2.2.5-0.3+b2_amd64.deb ...
Unpacking libpaper2:amd64 (2.2.5-0.3+b2) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../106-libpaper-utils_2.2.5-0.3+b2_amd64.deb ...
Unpacking libpaper-utils (2.2.5-0.3+b2) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../107-libreadline8t64_8.2-6_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.2-6) ...
Selecting previously unselected package libsharpyuv0:amd64.
Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_amd64.deb ...
Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libsm6:amd64.
Preparing to unpack .../109-libsm6_2%3a1.2.6-1_amd64.deb ...
Unpacking libsm6:amd64 (2:1.2.6-1) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../110-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Selecting previously unselected package libwebp7:amd64.
Preparing to unpack .../111-libwebp7_1.5.0-0.1_amd64.deb ...
Unpacking libwebp7:amd64 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:amd64.
Preparing to unpack .../112-libtiff6_4.7.0-3_amd64.deb ...
Unpacking libtiff6:amd64 (4.7.0-3) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../113-libtirpc-common_1.3.6+ds-1_all.deb ...
Unpacking libtirpc-common (1.3.6+ds-1) ...
Selecting previously unselected package libtirpc3t64:amd64.
Preparing to unpack .../114-libtirpc3t64_1.3.6+ds-1_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ...
Selecting previously unselected package libxft2:amd64.
Preparing to unpack .../115-libxft2_2.3.6-1+b4_amd64.deb ...
Unpacking libxft2:amd64 (2.3.6-1+b4) ...
Selecting previously unselected package libxss1:amd64.
Preparing to unpack .../116-libxss1_1%3a1.2.3-1+b3_amd64.deb ...
Unpacking libxss1:amd64 (1:1.2.3-1+b3) ...
Selecting previously unselected package libtk8.6:amd64.
Preparing to unpack .../117-libtk8.6_8.6.16-1_amd64.deb ...
Unpacking libtk8.6:amd64 (8.6.16-1) ...
Selecting previously unselected package libuv1t64:amd64.
Preparing to unpack .../118-libuv1t64_1.50.0-2_amd64.deb ...
Unpacking libuv1t64:amd64 (1.50.0-2) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../119-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ...
Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ...
Selecting previously unselected package libxt6t64:amd64.
Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2+b2_amd64.deb ...
Unpacking libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Selecting previously unselected package libyaml-0-2:amd64.
Preparing to unpack .../121-libyaml-0-2_0.2.5-2_amd64.deb ...
Unpacking libyaml-0-2:amd64 (0.2.5-2) ...
Selecting previously unselected package zip.
Preparing to unpack .../122-zip_3.0-14_amd64.deb ...
Unpacking zip (3.0-14) ...
Selecting previously unselected package unzip.
Preparing to unpack .../123-unzip_6.0-29_amd64.deb ...
Unpacking unzip (6.0-29) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../124-xdg-utils_1.2.1-2_all.deb ...
Unpacking xdg-utils (1.2.1-2) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../125-r-base-core_4.4.3-1+b1_amd64.deb ...
Unpacking r-base-core (4.4.3-1+b1) ...
Selecting previously unselected package r-cran-littler.
Preparing to unpack .../126-r-cran-littler_0.3.21-1_amd64.deb ...
Unpacking r-cran-littler (0.3.21-1) ...
Selecting previously unselected package littler.
Preparing to unpack .../127-littler_0.3.21-1_all.deb ...
Unpacking littler (0.3.21-1) ...
Selecting previously unselected package node-bootstrap-sass.
Preparing to unpack .../128-node-bootstrap-sass_3.4.3-2_all.deb ...
Unpacking node-bootstrap-sass (3.4.3-2) ...
Selecting previously unselected package node-html5shiv.
Preparing to unpack .../129-node-html5shiv_3.7.3+dfsg-5_all.deb ...
Unpacking node-html5shiv (3.7.3+dfsg-5) ...
Selecting previously unselected package node-normalize.css.
Preparing to unpack .../130-node-normalize.css_8.0.1-5_all.deb ...
Unpacking node-normalize.css (8.0.1-5) ...
Selecting previously unselected package pandoc-data.
Preparing to unpack .../131-pandoc-data_3.1.11.1-3_all.deb ...
Unpacking pandoc-data (3.1.11.1-3) ...
Selecting previously unselected package pandoc.
Preparing to unpack .../132-pandoc_3.1.11.1+ds-2_amd64.deb ...
Unpacking pandoc (3.1.11.1+ds-2) ...
Selecting previously unselected package r-bioc-biocgenerics.
Preparing to unpack .../133-r-bioc-biocgenerics_0.52.0-2_all.deb ...
Unpacking r-bioc-biocgenerics (0.52.0-2) ...
Selecting previously unselected package r-bioc-biobase.
Preparing to unpack .../134-r-bioc-biobase_2.66.0-2_amd64.deb ...
Unpacking r-bioc-biobase (2.66.0-2) ...
Selecting previously unselected package r-bioc-s4vectors.
Preparing to unpack .../135-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ...
Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
Selecting previously unselected package r-bioc-iranges.
Preparing to unpack .../136-r-bioc-iranges_2.40.1-2_amd64.deb ...
Unpacking r-bioc-iranges (2.40.1-2) ...
Selecting previously unselected package r-cran-dbi.
Preparing to unpack .../137-r-cran-dbi_1.2.3-1_all.deb ...
Unpacking r-cran-dbi (1.2.3-1) ...
Selecting previously unselected package r-cran-bit.
Preparing to unpack .../138-r-cran-bit_4.6.0+dfsg-1_amd64.deb ...
Unpacking r-cran-bit (4.6.0+dfsg-1) ...
Selecting previously unselected package r-cran-bit64.
Preparing to unpack .../139-r-cran-bit64_4.6.0-1-1_amd64.deb ...
Unpacking r-cran-bit64 (4.6.0-1-1) ...
Selecting previously unselected package r-cran-rlang.
Preparing to unpack .../140-r-cran-rlang_1.1.5-1_amd64.deb ...
Unpacking r-cran-rlang (1.1.5-1) ...
Selecting previously unselected package r-cran-cli.
Preparing to unpack .../141-r-cran-cli_3.6.4-1_amd64.deb ...
Unpacking r-cran-cli (3.6.4-1) ...
Selecting previously unselected package r-cran-glue.
Preparing to unpack .../142-r-cran-glue_1.8.0-1_amd64.deb ...
Unpacking r-cran-glue (1.8.0-1) ...
Selecting previously unselected package r-cran-lifecycle.
Preparing to unpack .../143-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
Selecting previously unselected package r-cran-vctrs.
Preparing to unpack .../144-r-cran-vctrs_0.6.5-1_amd64.deb ...
Unpacking r-cran-vctrs (0.6.5-1) ...
Selecting previously unselected package r-cran-blob.
Preparing to unpack .../145-r-cran-blob_1.2.4-1_all.deb ...
Unpacking r-cran-blob (1.2.4-1) ...
Selecting previously unselected package r-cran-fastmap.
Preparing to unpack .../146-r-cran-fastmap_1.2.0-1_amd64.deb ...
Unpacking r-cran-fastmap (1.2.0-1) ...
Selecting previously unselected package r-cran-cachem.
Preparing to unpack .../147-r-cran-cachem_1.1.0-1_amd64.deb ...
Unpacking r-cran-cachem (1.1.0-1) ...
Selecting previously unselected package r-cran-memoise.
Preparing to unpack .../148-r-cran-memoise_2.0.1-1_all.deb ...
Unpacking r-cran-memoise (2.0.1-1) ...
Selecting previously unselected package r-cran-pkgconfig.
Preparing to unpack .../149-r-cran-pkgconfig_2.0.3-2_all.deb ...
Unpacking r-cran-pkgconfig (2.0.3-2) ...
Selecting previously unselected package r-cran-plogr.
Preparing to unpack .../150-r-cran-plogr_0.2.0-3_all.deb ...
Unpacking r-cran-plogr (0.2.0-3) ...
Selecting previously unselected package r-cran-cpp11.
Preparing to unpack .../151-r-cran-cpp11_0.5.2-1_all.deb ...
Unpacking r-cran-cpp11 (0.5.2-1) ...
Selecting previously unselected package r-cran-rsqlite.
Preparing to unpack .../152-r-cran-rsqlite_2.3.9-1_amd64.deb ...
Unpacking r-cran-rsqlite (2.3.9-1) ...
Selecting previously unselected package r-cran-curl.
Preparing to unpack .../153-r-cran-curl_6.2.1+dfsg-1_amd64.deb ...
Unpacking r-cran-curl (6.2.1+dfsg-1) ...
Selecting previously unselected package r-cran-jsonlite.
Preparing to unpack .../154-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
Selecting previously unselected package r-cran-mime.
Preparing to unpack .../155-r-cran-mime_0.12-2_amd64.deb ...
Unpacking r-cran-mime (0.12-2) ...
Selecting previously unselected package r-cran-sys.
Preparing to unpack .../156-r-cran-sys_3.4.3-1_amd64.deb ...
Unpacking r-cran-sys (3.4.3-1) ...
Selecting previously unselected package r-cran-askpass.
Preparing to unpack .../157-r-cran-askpass_1.2.1-1_amd64.deb ...
Unpacking r-cran-askpass (1.2.1-1) ...
Selecting previously unselected package r-cran-openssl.
Preparing to unpack .../158-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ...
Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
Selecting previously unselected package r-cran-r6.
Preparing to unpack .../159-r-cran-r6_2.6.1-1_all.deb ...
Unpacking r-cran-r6 (2.6.1-1) ...
Selecting previously unselected package r-cran-httr.
Preparing to unpack .../160-r-cran-httr_1.4.7+dfsg-1_all.deb ...
Unpacking r-cran-httr (1.4.7+dfsg-1) ...
Selecting previously unselected package r-cran-png.
Preparing to unpack .../161-r-cran-png_0.1-8-1+b1_amd64.deb ...
Unpacking r-cran-png (0.1-8-1+b1) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../162-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package r-bioc-zlibbioc.
Preparing to unpack .../163-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Selecting previously unselected package r-bioc-xvector.
Preparing to unpack .../164-r-bioc-xvector_0.46.0-2_amd64.deb ...
Unpacking r-bioc-xvector (0.46.0-2) ...
Selecting previously unselected package r-bioc-ucsc.utils.
Preparing to unpack .../165-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
Selecting previously unselected package r-bioc-genomeinfodbdata.
Preparing to unpack .../166-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
Selecting previously unselected package r-bioc-genomeinfodb.
Preparing to unpack .../167-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
Selecting previously unselected package r-cran-crayon.
Preparing to unpack .../168-r-cran-crayon_1.5.3-1_all.deb ...
Unpacking r-cran-crayon (1.5.3-1) ...
Selecting previously unselected package r-bioc-biostrings.
Preparing to unpack .../169-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ...
Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
Selecting previously unselected package r-bioc-keggrest.
Preparing to unpack .../170-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ...
Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ...
Selecting previously unselected package r-bioc-annotationdbi.
Preparing to unpack .../171-r-bioc-annotationdbi_1.68.0-2_all.deb ...
Unpacking r-bioc-annotationdbi (1.68.0-2) ...
Selecting previously unselected package r-bioc-genomicranges.
Preparing to unpack .../172-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ...
Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
Selecting previously unselected package r-cran-lazyeval.
Preparing to unpack .../173-r-cran-lazyeval_0.2.2-1+b1_amd64.deb ...
Unpacking r-cran-lazyeval (0.2.2-1+b1) ...
Selecting previously unselected package r-bioc-annotationfilter.
Preparing to unpack .../174-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ...
Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ...
Selecting previously unselected package r-cran-generics.
Preparing to unpack .../175-r-cran-generics_0.1.3-1_all.deb ...
Unpacking r-cran-generics (0.1.3-1) ...
Selecting previously unselected package r-cran-magrittr.
Preparing to unpack .../176-r-cran-magrittr_2.0.3-1_amd64.deb ...
Unpacking r-cran-magrittr (2.0.3-1) ...
Selecting previously unselected package r-cran-utf8.
Preparing to unpack .../177-r-cran-utf8_1.2.4-1_amd64.deb ...
Unpacking r-cran-utf8 (1.2.4-1) ...
Selecting previously unselected package r-cran-pillar.
Preparing to unpack .../178-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
Selecting previously unselected package r-cran-fansi.
Preparing to unpack .../179-r-cran-fansi_1.0.6-1_amd64.deb ...
Unpacking r-cran-fansi (1.0.6-1) ...
Selecting previously unselected package r-cran-tibble.
Preparing to unpack .../180-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
Selecting previously unselected package r-cran-withr.
Preparing to unpack .../181-r-cran-withr_3.0.2+dfsg-1_all.deb ...
Unpacking r-cran-withr (3.0.2+dfsg-1) ...
Selecting previously unselected package r-cran-tidyselect.
Preparing to unpack .../182-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ...
Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
Selecting previously unselected package r-cran-dplyr.
Preparing to unpack .../183-r-cran-dplyr_1.1.4-4_amd64.deb ...
Unpacking r-cran-dplyr (1.1.4-4) ...
Selecting previously unselected package r-cran-purrr.
Preparing to unpack .../184-r-cran-purrr_1.0.4-1_amd64.deb ...
Unpacking r-cran-purrr (1.0.4-1) ...
Selecting previously unselected package r-cran-stringi.
Preparing to unpack .../185-r-cran-stringi_1.8.4-1+b1_amd64.deb ...
Unpacking r-cran-stringi (1.8.4-1+b1) ...
Selecting previously unselected package r-cran-stringr.
Preparing to unpack .../186-r-cran-stringr_1.5.1-1_all.deb ...
Unpacking r-cran-stringr (1.5.1-1) ...
Selecting previously unselected package r-cran-tidyr.
Preparing to unpack .../187-r-cran-tidyr_1.3.1-1_amd64.deb ...
Unpacking r-cran-tidyr (1.3.1-1) ...
Selecting previously unselected package r-cran-dbplyr.
Preparing to unpack .../188-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ...
Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ...
Selecting previously unselected package r-cran-filelock.
Preparing to unpack .../189-r-cran-filelock_1.0.3-1_amd64.deb ...
Unpacking r-cran-filelock (1.0.3-1) ...
Selecting previously unselected package r-bioc-biocfilecache.
Preparing to unpack .../190-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ...
Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ...
Selecting previously unselected package r-bioc-biocio.
Preparing to unpack .../191-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
Selecting previously unselected package r-cran-formatr.
Preparing to unpack .../192-r-cran-formatr_1.14-2_all.deb ...
Unpacking r-cran-formatr (1.14-2) ...
Selecting previously unselected package r-cran-lambda.r.
Preparing to unpack .../193-r-cran-lambda.r_1.2.4-2_all.deb ...
Unpacking r-cran-lambda.r (1.2.4-2) ...
Selecting previously unselected package r-cran-futile.options.
Preparing to unpack .../194-r-cran-futile.options_1.0.1-3_all.deb ...
Unpacking r-cran-futile.options (1.0.1-3) ...
Selecting previously unselected package r-cran-futile.logger.
Preparing to unpack .../195-r-cran-futile.logger_1.4.3-4_all.deb ...
Unpacking r-cran-futile.logger (1.4.3-4) ...
Selecting previously unselected package r-cran-snow.
Preparing to unpack .../196-r-cran-snow_1%3a0.4.4-2_all.deb ...
Unpacking r-cran-snow (1:0.4.4-2) ...
Selecting previously unselected package r-cran-codetools.
Preparing to unpack .../197-r-cran-codetools_0.2-20-1_all.deb ...
Unpacking r-cran-codetools (0.2-20-1) ...
Selecting previously unselected package r-cran-bh.
Preparing to unpack .../198-r-cran-bh_1.84.0-1_all.deb ...
Unpacking r-cran-bh (1.84.0-1) ...
Selecting previously unselected package r-bioc-biocparallel.
Preparing to unpack .../199-r-bioc-biocparallel_1.40.0-2_amd64.deb ...
Unpacking r-bioc-biocparallel (1.40.0-2) ...
Selecting previously unselected package r-cran-hms.
Preparing to unpack .../200-r-cran-hms_1.1.3-1_all.deb ...
Unpacking r-cran-hms (1.1.3-1) ...
Selecting previously unselected package r-cran-prettyunits.
Preparing to unpack .../201-r-cran-prettyunits_1.2.0-1_all.deb ...
Unpacking r-cran-prettyunits (1.2.0-1) ...
Selecting previously unselected package r-cran-progress.
Preparing to unpack .../202-r-cran-progress_1.2.3-1_all.deb ...
Unpacking r-cran-progress (1.2.3-1) ...
Selecting previously unselected package r-cran-rappdirs.
Preparing to unpack .../203-r-cran-rappdirs_0.3.3-1_amd64.deb ...
Unpacking r-cran-rappdirs (0.3.3-1) ...
Selecting previously unselected package r-cran-httr2.
Preparing to unpack .../204-r-cran-httr2_1.1.1-1_all.deb ...
Unpacking r-cran-httr2 (1.1.1-1) ...
Selecting previously unselected package r-cran-digest.
Preparing to unpack .../205-r-cran-digest_0.6.37-1_amd64.deb ...
Unpacking r-cran-digest (0.6.37-1) ...
Selecting previously unselected package r-cran-xml2.
Preparing to unpack .../206-r-cran-xml2_1.3.8-1_amd64.deb ...
Unpacking r-cran-xml2 (1.3.8-1) ...
Selecting previously unselected package r-bioc-biomart.
Preparing to unpack .../207-r-bioc-biomart_2.62.1+dfsg-1_all.deb ...
Unpacking r-bioc-biomart (2.62.1+dfsg-1) ...
Selecting previously unselected package r-cran-farver.
Preparing to unpack .../208-r-cran-farver_2.1.2-1_amd64.deb ...
Unpacking r-cran-farver (2.1.2-1) ...
Selecting previously unselected package r-cran-labeling.
Preparing to unpack .../209-r-cran-labeling_0.4.3-1_all.deb ...
Unpacking r-cran-labeling (0.4.3-1) ...
Selecting previously unselected package r-cran-colorspace.
Preparing to unpack .../210-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ...
Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
Selecting previously unselected package r-cran-munsell.
Preparing to unpack .../211-r-cran-munsell_0.5.1-1_all.deb ...
Unpacking r-cran-munsell (0.5.1-1) ...
Selecting previously unselected package r-cran-rcolorbrewer.
Preparing to unpack .../212-r-cran-rcolorbrewer_1.1-3-1_all.deb ...
Unpacking r-cran-rcolorbrewer (1.1-3-1) ...
Selecting previously unselected package r-cran-viridislite.
Preparing to unpack .../213-r-cran-viridislite_0.4.2-2_all.deb ...
Unpacking r-cran-viridislite (0.4.2-2) ...
Selecting previously unselected package r-cran-scales.
Preparing to unpack .../214-r-cran-scales_1.3.0-1_all.deb ...
Unpacking r-cran-scales (1.3.0-1) ...
Selecting previously unselected package r-cran-gtable.
Preparing to unpack .../215-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
Selecting previously unselected package r-cran-isoband.
Preparing to unpack .../216-r-cran-isoband_0.2.7-1_amd64.deb ...
Unpacking r-cran-isoband (0.2.7-1) ...
Selecting previously unselected package r-cran-mass.
Preparing to unpack .../217-r-cran-mass_7.3-65-1_amd64.deb ...
Unpacking r-cran-mass (7.3-65-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../218-r-cran-lattice_0.22-7-1_amd64.deb ...
Unpacking r-cran-lattice (0.22-7-1) ...
Selecting previously unselected package r-cran-nlme.
Preparing to unpack .../219-r-cran-nlme_3.1.168-1_amd64.deb ...
Unpacking r-cran-nlme (3.1.168-1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../220-r-cran-matrix_1.7-3-1_amd64.deb ...
Unpacking r-cran-matrix (1.7-3-1) ...
Selecting previously unselected package r-cran-mgcv.
Preparing to unpack .../221-r-cran-mgcv_1.9-3-1_amd64.deb ...
Unpacking r-cran-mgcv (1.9-3-1) ...
Selecting previously unselected package r-cran-ggplot2.
Preparing to unpack .../222-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
Selecting previously unselected package r-cran-cluster.
Preparing to unpack .../223-r-cran-cluster_2.1.8.1-1_amd64.deb ...
Unpacking r-cran-cluster (2.1.8.1-1) ...
Selecting previously unselected package r-cran-survival.
Preparing to unpack .../224-r-cran-survival_3.8-3-1_amd64.deb ...
Unpacking r-cran-survival (3.8-3-1) ...
Selecting previously unselected package r-cran-rpart.
Preparing to unpack .../225-r-cran-rpart_4.1.24-1_amd64.deb ...
Unpacking r-cran-rpart (4.1.24-1) ...
Selecting previously unselected package r-cran-nnet.
Preparing to unpack .../226-r-cran-nnet_7.3-20-1_amd64.deb ...
Unpacking r-cran-nnet (7.3-20-1) ...
Selecting previously unselected package r-cran-foreign.
Preparing to unpack .../227-r-cran-foreign_0.8.90-1_amd64.deb ...
Unpacking r-cran-foreign (0.8.90-1) ...
Selecting previously unselected package r-cran-gridextra.
Preparing to unpack .../228-r-cran-gridextra_2.3-3_all.deb ...
Unpacking r-cran-gridextra (2.3-3) ...
Selecting previously unselected package r-cran-data.table.
Preparing to unpack .../229-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ...
Unpacking r-cran-data.table (1.17.0+dfsg-1) ...
Selecting previously unselected package r-cran-evaluate.
Preparing to unpack .../230-r-cran-evaluate_1.0.3-1_all.deb ...
Unpacking r-cran-evaluate (1.0.3-1) ...
Selecting previously unselected package r-cran-xfun.
Preparing to unpack .../231-r-cran-xfun_0.51+dfsg-1_amd64.deb ...
Unpacking r-cran-xfun (0.51+dfsg-1) ...
Selecting previously unselected package r-cran-highr.
Preparing to unpack .../232-r-cran-highr_0.11+dfsg-1_all.deb ...
Unpacking r-cran-highr (0.11+dfsg-1) ...
Selecting previously unselected package r-cran-yaml.
Preparing to unpack .../233-r-cran-yaml_2.3.10-1_amd64.deb ...
Unpacking r-cran-yaml (2.3.10-1) ...
Selecting previously unselected package r-cran-knitr.
Preparing to unpack .../234-r-cran-knitr_1.50+dfsg-1_all.deb ...
Unpacking r-cran-knitr (1.50+dfsg-1) ...
Selecting previously unselected package r-cran-backports.
Preparing to unpack .../235-r-cran-backports_1.5.0-2_amd64.deb ...
Unpacking r-cran-backports (1.5.0-2) ...
Selecting previously unselected package r-cran-checkmate.
Preparing to unpack .../236-r-cran-checkmate_2.3.2-1_amd64.deb ...
Unpacking r-cran-checkmate (2.3.2-1) ...
Selecting previously unselected package r-cran-base64enc.
Preparing to unpack .../237-r-cran-base64enc_0.1-3-3_amd64.deb ...
Unpacking r-cran-base64enc (0.1-3-3) ...
Selecting previously unselected package r-cran-htmltools.
Preparing to unpack .../238-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
Unpacking r-cran-htmltools (0.5.8.1-1) ...
Selecting previously unselected package r-cran-jquerylib.
Preparing to unpack .../239-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
Selecting previously unselected package r-cran-fs.
Preparing to unpack .../240-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
Unpacking r-cran-fs (1.6.5+dfsg-1) ...
Selecting previously unselected package r-cran-sass.
Preparing to unpack .../241-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
Unpacking r-cran-sass (0.4.9+dfsg-1) ...
Selecting previously unselected package r-cran-bslib.
Preparing to unpack .../242-r-cran-bslib_0.9.0+dfsg-1_all.deb ...
Unpacking r-cran-bslib (0.9.0+dfsg-1) ...
Selecting previously unselected package r-cran-fontawesome.
Preparing to unpack .../243-r-cran-fontawesome_0.5.3-1_all.deb ...
Unpacking r-cran-fontawesome (0.5.3-1) ...
Selecting previously unselected package r-cran-tinytex.
Preparing to unpack .../244-r-cran-tinytex_0.56-1_all.deb ...
Unpacking r-cran-tinytex (0.56-1) ...
Selecting previously unselected package r-cran-pkgkitten.
Preparing to unpack .../245-r-cran-pkgkitten_0.2.4-1_all.deb ...
Unpacking r-cran-pkgkitten (0.2.4-1) ...
Selecting previously unselected package r-cran-rcpp.
Preparing to unpack .../246-r-cran-rcpp_1.0.14-1_amd64.deb ...
Unpacking r-cran-rcpp (1.0.14-1) ...
Selecting previously unselected package r-cran-later.
Preparing to unpack .../247-r-cran-later_1.4.1+dfsg-1_amd64.deb ...
Unpacking r-cran-later (1.4.1+dfsg-1) ...
Selecting previously unselected package r-cran-promises.
Preparing to unpack .../248-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
Unpacking r-cran-promises (1.3.2+dfsg-1) ...
Selecting previously unselected package r-cran-httpuv.
Preparing to unpack .../249-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
Selecting previously unselected package r-cran-xtable.
Preparing to unpack .../250-r-cran-xtable_1%3a1.8-4-2_all.deb ...
Unpacking r-cran-xtable (1:1.8-4-2) ...
Selecting previously unselected package r-cran-sourcetools.
Preparing to unpack .../251-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
Unpacking r-cran-sourcetools (0.1.7-1-1) ...
Selecting previously unselected package r-cran-commonmark.
Preparing to unpack .../252-r-cran-commonmark_1.9.5-1_amd64.deb ...
Unpacking r-cran-commonmark (1.9.5-1) ...
Selecting previously unselected package r-cran-shiny.
Preparing to unpack .../253-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
Selecting previously unselected package r-cran-rmarkdown.
Preparing to unpack .../254-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
Selecting previously unselected package r-cran-htmlwidgets.
Preparing to unpack .../255-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
Selecting previously unselected package r-cran-rstudioapi.
Preparing to unpack .../256-r-cran-rstudioapi_0.17.1-1_all.deb ...
Unpacking r-cran-rstudioapi (0.17.1-1) ...
Selecting previously unselected package r-cran-htmltable.
Preparing to unpack .../257-r-cran-htmltable_2.4.3-1_all.deb ...
Unpacking r-cran-htmltable (2.4.3-1) ...
Selecting previously unselected package r-cran-viridis.
Preparing to unpack .../258-r-cran-viridis_0.6.5-1_all.deb ...
Unpacking r-cran-viridis (0.6.5-1) ...
Selecting previously unselected package r-cran-formula.
Preparing to unpack .../259-r-cran-formula_1.2-5-1_all.deb ...
Unpacking r-cran-formula (1.2-5-1) ...
Selecting previously unselected package r-cran-chron.
Preparing to unpack .../260-r-cran-chron_2.3-62-1_amd64.deb ...
Unpacking r-cran-chron (2.3-62-1) ...
Selecting previously unselected package r-cran-jpeg.
Preparing to unpack .../261-r-cran-jpeg_0.1-10-1_amd64.deb ...
Unpacking r-cran-jpeg (0.1-10-1) ...
Selecting previously unselected package r-cran-deldir.
Preparing to unpack .../262-r-cran-deldir_2.0-4-1_amd64.deb ...
Unpacking r-cran-deldir (2.0-4-1) ...
Selecting previously unselected package r-cran-rcppeigen.
Preparing to unpack .../263-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ...
Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
Selecting previously unselected package r-cran-interp.
Preparing to unpack .../264-r-cran-interp_1.1-6-1_amd64.deb ...
Unpacking r-cran-interp (1.1-6-1) ...
Selecting previously unselected package r-cran-latticeextra.
Preparing to unpack .../265-r-cran-latticeextra_0.6-30-1_all.deb ...
Unpacking r-cran-latticeextra (0.6-30-1) ...
Selecting previously unselected package r-cran-acepack.
Preparing to unpack .../266-r-cran-acepack_1.6.1-1_amd64.deb ...
Unpacking r-cran-acepack (1.6.1-1) ...
Selecting previously unselected package r-cran-hmisc.
Preparing to unpack .../267-r-cran-hmisc_5.2-3-1_amd64.deb ...
Unpacking r-cran-hmisc (5.2-3-1) ...
Selecting previously unselected package r-cran-dichromat.
Preparing to unpack .../268-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ...
Unpacking r-cran-dichromat (1:2.0-0.1-1) ...
Selecting previously unselected package r-cran-matrixstats.
Preparing to unpack .../269-r-cran-matrixstats_1.5.0-1_amd64.deb ...
Unpacking r-cran-matrixstats (1.5.0-1) ...
Selecting previously unselected package r-bioc-matrixgenerics.
Preparing to unpack .../270-r-bioc-matrixgenerics_1.18.1-1_all.deb ...
Unpacking r-bioc-matrixgenerics (1.18.1-1) ...
Selecting previously unselected package r-cran-abind.
Preparing to unpack .../271-r-cran-abind_1.4-8-1_all.deb ...
Unpacking r-cran-abind (1.4-8-1) ...
Selecting previously unselected package r-bioc-s4arrays.
Preparing to unpack .../272-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ...
Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
Selecting previously unselected package r-bioc-sparsearray.
Preparing to unpack .../273-r-bioc-sparsearray_1.6.2+dfsg-2_amd64.deb ...
Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ...
Selecting previously unselected package r-bioc-delayedarray.
Preparing to unpack .../274-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ...
Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
Selecting previously unselected package r-bioc-summarizedexperiment.
Preparing to unpack .../275-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ...
Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
Selecting previously unselected package r-cran-bitops.
Preparing to unpack .../276-r-cran-bitops_1.0-9-1_amd64.deb ...
Unpacking r-cran-bitops (1.0-9-1) ...
Selecting previously unselected package r-bioc-rhtslib.
Preparing to unpack .../277-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ...
Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
Selecting previously unselected package r-bioc-rsamtools.
Preparing to unpack .../278-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ...
Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ...
Selecting previously unselected package r-bioc-genomicalignments.
Preparing to unpack .../279-r-bioc-genomicalignments_1.42.0-2_amd64.deb ...
Unpacking r-bioc-genomicalignments (1.42.0-2) ...
Selecting previously unselected package r-cran-xml.
Preparing to unpack .../280-r-cran-xml_3.99-0.18-1_amd64.deb ...
Unpacking r-cran-xml (3.99-0.18-1) ...
Selecting previously unselected package r-cran-rcurl.
Preparing to unpack .../281-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ...
Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
Selecting previously unselected package r-cran-rjson.
Preparing to unpack .../282-r-cran-rjson_0.2.23-1_amd64.deb ...
Unpacking r-cran-rjson (0.2.23-1) ...
Selecting previously unselected package r-cran-restfulr.
Preparing to unpack .../283-r-cran-restfulr_0.0.15-1_amd64.deb ...
Unpacking r-cran-restfulr (0.0.15-1) ...
Selecting previously unselected package r-bioc-rtracklayer.
Preparing to unpack .../284-r-bioc-rtracklayer_1.66.0-2_amd64.deb ...
Unpacking r-bioc-rtracklayer (1.66.0-2) ...
Selecting previously unselected package r-bioc-genomicfeatures.
Preparing to unpack .../285-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ...
Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
Selecting previously unselected package r-bioc-bsgenome.
Preparing to unpack .../286-r-bioc-bsgenome_1.74.0-2_all.deb ...
Unpacking r-bioc-bsgenome (1.74.0-2) ...
Selecting previously unselected package r-bioc-variantannotation.
Preparing to unpack .../287-r-bioc-variantannotation_1.52.0-2_amd64.deb ...
Unpacking r-bioc-variantannotation (1.52.0-2) ...
Selecting previously unselected package r-bioc-protgenerics.
Preparing to unpack .../288-r-bioc-protgenerics_1.38.0-2_all.deb ...
Unpacking r-bioc-protgenerics (1.38.0-2) ...
Selecting previously unselected package r-bioc-ensembldb.
Preparing to unpack .../289-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ...
Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ...
Selecting previously unselected package r-bioc-biovizbase.
Preparing to unpack .../290-r-bioc-biovizbase_1.54.0-2_amd64.deb ...
Unpacking r-bioc-biovizbase (1.54.0-2) ...
Selecting previously unselected package piuparts-depends-dummy.
Preparing to unpack .../291-piuparts-depends-dummy.deb ...
Unpacking piuparts-depends-dummy (0.invalid.0) ...
Setting up libexpat1:amd64 (2.7.1-1) ...
Setting up libjs-json (0~20221030+~1.0.8-1) ...
Setting up javascript-common (12) ...
Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ...
Setting up libpixman-1-0:amd64 (0.44.0-3) ...
Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
Setting up libxau6:amd64 (1:1.0.11-1) ...
Setting up libxdmcp6:amd64 (1:1.1.5-1) ...
Setting up libkeyutils1:amd64 (1.6.3-5) ...
Setting up libxcb1:amd64 (1.17.0-2+b1) ...
Setting up fonts-mathjax (2.7.9+dfsg-1) ...
Setting up liblerc4:amd64 (4.0.0+ds-5) ...
Setting up libjs-mathjax (2.7.9+dfsg-1) ...
Setting up libdatrie1:amd64 (0.2.13-3+b1) ...
Setting up libjs-popper.js (1.16.1+ds-6) ...
Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
Setting up libyaml-0-2:amd64 (0.2.5-2) ...
Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
Setting up libtirpc-common (1.3.6+ds-1) ...
Setting up unzip (6.0-29) ...
Setting up libbrotli1:amd64 (1.1.0-2+b7) ...
Setting up libuv1t64:amd64 (1.50.0-2) ...
Setting up x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up node-html5shiv (3.7.3+dfsg-5) ...
Setting up libnghttp2-14:amd64 (1.64.0-1) ...
Setting up libdeflate0:amd64 (1.23-1+b1) ...
Setting up linux-libc-dev (6.12.21-1) ...
Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
Setting up libcom-err2:amd64 (1.47.2-1+b1) ...
Setting up libgomp1:amd64 (14.2.0-19) ...
Setting up libjs-modernizr (3.13.0-0.1) ...
Setting up libjbig0:amd64 (2.1-6.1+b2) ...
Setting up libkrb5support0:amd64 (1.21.3-5) ...
Setting up libjs-es5-shim (4.6.7-2) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Setting up zip (3.0-14) ...
Setting up libblas3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up rpcsvc-proto (1.4.3-1) ...
Setting up libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Setting up libx11-data (2:1.8.12-1) ...
Setting up libfribidi0:amd64 (1.0.16-1) ...
Setting up libquadmath0:amd64 (14.2.0-19) ...
Setting up libjs-d3 (3.5.17-4) ...
Setting up libunistring5:amd64 (1.3-2) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:amd64 (1.6.47-1.1) ...
Setting up libatomic1:amd64 (14.2.0-19) ...
Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libk5crypto3:amd64 (1.21.3-5) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Setting up libgfortran5:amd64 (14.2.0-19) ...
Setting up libnghttp3-9:amd64 (1.8.0-1) ...
Setting up libwebp7:amd64 (1.5.0-0.1) ...
Setting up libubsan1:amd64 (14.2.0-19) ...
Setting up libffi8:amd64 (3.4.7-1) ...
Setting up libnuma1:amd64 (2.0.18-1+b1) ...
Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
Setting up libhwasan0:amd64 (14.2.0-19) ...
Setting up libcrypt-dev:amd64 (1:4.4.38-1) ...
Setting up libtiff6:amd64 (4.7.0-3) ...
Setting up libasan8:amd64 (14.2.0-19) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up liblua5.4-0:amd64 (5.4.7-1+b2) ...
Setting up libx11-6:amd64 (2:1.8.12-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up node-bootstrap-sass (3.4.3-2) ...
Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
Setting up libkrb5-3:amd64 (1.21.3-5) ...
Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
Setting up libicu76:amd64 (76.1-3) ...
Setting up libpaper2:amd64 (2.2.5-0.3+b2) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up pandoc-data (3.1.11.1-3) ...
Setting up libtsan2:amd64 (14.2.0-19) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libc-dev-bin (2.41-6) ...
Setting up openssl (3.5.0-1) ...
Setting up node-normalize.css (8.0.1-5) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ...
Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libldap2:amd64 (2.6.9+dfsg-2) ...
Setting up liblsan0:amd64 (14.2.0-19) ...
Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
Setting up libitm1:amd64 (14.2.0-19) ...
Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
Setting up libice6:amd64 (2:1.1.1-1) ...
Setting up liblapack3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up libxrender1:amd64 (1:0.9.12-1) ...
Setting up fontconfig-config (2.15.0-2.3) ...
Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b3) ...
Setting up libidn2-0:amd64 (2.3.8-2) ...
Setting up libpaper-utils (2.2.5-0.3+b2) ...
Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
Setting up libthai0:amd64 (0.1.29-2+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libglib2.0-0t64:amd64 (2.84.1-1) ...
No schema files found: doing nothing.
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up pandoc (3.1.11.1+ds-2) ...
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up libc6-dev:amd64 (2.41-6) ...
Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Setting up libxss1:amd64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
Setting up libgcc-14-dev:amd64 (14.2.0-19) ...
Setting up libstdc++-14-dev:amd64 (14.2.0-19) ...
Setting up libsm6:amd64 (2:1.2.6-1) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up fontconfig (2.15.0-2.3) ...
Regenerating fonts cache... done.
Setting up libxft2:amd64 (2.3.6-1+b4) ...
Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ...
Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ...
Setting up libtk8.6:amd64 (8.6.16-1) ...
Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libcairo2:amd64 (1.18.4-1+b1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libboost-dev:amd64 (1.83.0.2+b2) ...
Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Setting up libcurl4t64:amd64 (8.13.0-1) ...
Setting up r-base-core (4.4.3-1+b1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.3-1) ...
Setting up r-cran-labeling (0.4.3-1) ...
Setting up r-cran-sourcetools (0.1.7-1-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.22-7-1) ...
Setting up r-cran-nlme (3.1.168-1) ...
Setting up r-cran-farver (2.1.2-1) ...
Setting up r-cran-formatr (1.14-2) ...
Setting up r-cran-formula (1.2-5-1) ...
Setting up r-cran-xml (3.99-0.18-1) ...
Setting up r-cran-viridislite (0.4.2-2) ...
Setting up r-cran-cluster (2.1.8.1-1) ...
Setting up r-cran-nnet (7.3-20-1) ...
Setting up r-cran-lazyeval (0.2.2-1+b1) ...
Setting up r-cran-commonmark (1.9.5-1) ...
Setting up r-cran-rjson (0.2.23-1) ...
Setting up r-cran-r6 (2.6.1-1) ...
Setting up r-cran-pkgkitten (0.2.4-1) ...
Setting up r-cran-jpeg (0.1-10-1) ...
Setting up r-cran-chron (2.3-62-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-filelock (1.0.3-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
Setting up r-cran-littler (0.3.21-1) ...
Setting up r-cran-bh (1.84.0-1) ...
Setting up r-cran-fs (1.6.5+dfsg-1) ...
Setting up r-cran-rcpp (1.0.14-1) ...
Setting up r-cran-curl (6.2.1+dfsg-1) ...
Setting up r-cran-codetools (0.2-20-1) ...
Setting up r-bioc-biocgenerics (0.52.0-2) ...
Setting up r-cran-rlang (1.1.5-1) ...
Setting up r-cran-matrixstats (1.5.0-1) ...
Setting up littler (0.3.21-1) ...
Setting up r-bioc-matrixgenerics (1.18.1-1) ...
Setting up r-cran-xfun (0.51+dfsg-1) ...
Setting up r-cran-sys (3.4.3-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-backports (1.5.0-2) ...
Setting up r-cran-mime (0.12-2) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-base64enc (0.1-3-3) ...
Setting up r-cran-abind (1.4-8-1) ...
Setting up r-cran-digest (0.6.37-1) ...
Setting up r-cran-yaml (2.3.10-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-bioc-protgenerics (1.38.0-2) ...
Setting up r-cran-evaluate (1.0.3-1) ...
Setting up r-cran-dbi (1.2.3-1) ...
Setting up r-cran-highr (0.11+dfsg-1) ...
Setting up r-cran-prettyunits (1.2.0-1) ...
Setting up r-cran-fansi (1.0.6-1) ...
Setting up r-cran-mass (7.3-65-1) ...
Setting up r-cran-checkmate (2.3.2-1) ...
Setting up r-cran-acepack (1.6.1-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-data.table (1.17.0+dfsg-1) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-foreign (0.8.90-1) ...
Setting up r-cran-bit (4.6.0+dfsg-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.6.4-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-bitops (1.0-9-1) ...
Setting up r-cran-bit64 (4.6.0-1-1) ...
Setting up r-cran-dichromat (1:2.0-0.1-1) ...
Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Setting up r-cran-deldir (2.0-4-1) ...
Setting up r-cran-askpass (1.2.1-1) ...
Setting up r-cran-fastmap (1.2.0-1) ...
Setting up r-cran-png (0.1-8-1+b1) ...
Setting up r-bioc-biobase (2.66.0-2) ...
Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
Setting up r-cran-rstudioapi (0.17.1-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
Setting up r-cran-stringi (1.8.4-1+b1) ...
Setting up r-cran-cpp11 (0.5.2-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
Setting up r-cran-isoband (0.2.7-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-gtable (0.3.6+dfsg-1) ...
Setting up r-cran-later (1.4.1+dfsg-1) ...
Setting up r-cran-matrix (1.7-3-1) ...
Setting up r-cran-htmltools (0.5.8.1-1) ...
Setting up r-cran-tinytex (0.56-1) ...
Setting up r-cran-knitr (1.50+dfsg-1) ...
Setting up r-cran-mgcv (1.9-3-1) ...
Setting up r-cran-cachem (1.1.0-1) ...
Setting up r-cran-sass (0.4.9+dfsg-1) ...
Setting up r-bioc-iranges (2.40.1-2) ...
Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
Setting up r-cran-pillar (1.10.1+dfsg-1) ...
Setting up r-cran-openssl (2.3.2+dfsg-1) ...
Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
Setting up r-cran-stringr (1.5.1-1) ...
Setting up r-bioc-biocparallel (1.40.0-2) ...
Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
Setting up r-cran-xml2 (1.3.8-1) ...
Setting up r-cran-munsell (0.5.1-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-3) ...
Setting up r-cran-fontawesome (0.5.3-1) ...
Setting up r-cran-survival (3.8-3-1) ...
Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
Setting up r-cran-interp (1.1-6-1) ...
Setting up r-cran-httr2 (1.1.1-1) ...
Setting up r-cran-httr (1.4.7+dfsg-1) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up r-cran-hms (1.1.3-1) ...
Setting up r-cran-scales (1.3.0-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-promises (1.3.2+dfsg-1) ...
Setting up r-cran-purrr (1.0.4-1) ...
Setting up r-cran-blob (1.2.4-1) ...
Setting up r-bioc-xvector (0.46.0-2) ...
Setting up r-cran-dplyr (1.1.4-4) ...
Setting up r-cran-rsqlite (2.3.9-1) ...
Setting up r-cran-progress (1.2.3-1) ...
Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
Setting up r-cran-rpart (4.1.24-1) ...
Setting up r-cran-latticeextra (0.6-30-1) ...
Setting up r-cran-viridis (0.6.5-1) ...
Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
Setting up r-cran-bslib (0.9.0+dfsg-1) ...
Setting up r-cran-tidyr (1.3.1-1) ...
Setting up r-cran-dbplyr (2.5.0+dfsg-1) ...
Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ...
Setting up r-cran-shiny (1.10.0+dfsg-2) ...
Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
Setting up r-bioc-annotationdbi (1.68.0-2) ...
Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.42.0-2) ...
Setting up r-bioc-rtracklayer (1.66.0-2) ...
Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
Setting up r-cran-htmltable (2.4.3-1) ...
Setting up r-bioc-bsgenome (1.74.0-2) ...
Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ...
Setting up r-cran-hmisc (5.2-3-1) ...
Setting up r-bioc-variantannotation (1.52.0-2) ...
Setting up r-bioc-biovizbase (1.54.0-2) ...
Setting up piuparts-depends-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.41-6) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
1m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb']
1m9.1s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok
1m9.1s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpxtllkphh/./tmp/piuparts-depends-dummy.deb
1m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy']
1m9.1s DUMP:
piuparts-depends-dummy install ok installed
1m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy']
1m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', 'piuparts-depends-dummy']
1m9.1s DUMP:
(Reading database ... 51224 files and directories currently installed.)
Removing piuparts-depends-dummy (0.invalid.0) ...
1m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', 'piuparts-depends-dummy']
1m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'clean']
1m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'clean']
1m9.2s DEBUG: Recording chroot state
1m10.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
1m13.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
1m17.8s DEBUG: No broken symlinks as far as we can find.
1m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy']
1m18.9s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
1m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy']
1m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy', 'r-bioc-gviz']
1m19.0s DUMP:
r-bioc-gviz:
Installed: (none)
Candidate: 1.50.0+dfsg-2
Version table:
1.50.0+dfsg-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
1m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy', 'r-bioc-gviz']
1m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.50.0+dfsg-2']
1m25.6s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Suggested packages:
r-bioc-biocstyle r-cran-testthat
The following NEW packages will be installed:
r-bioc-gviz
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 5168 kB of archives.
After this operation, 7171 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-gviz all 1.50.0+dfsg-2 [5168 kB]
Fetched 5168 kB in 5s (1027 kB/s)
Selecting previously unselected package r-bioc-gviz.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51224 files and directories currently installed.)
Preparing to unpack .../r-bioc-gviz_1.50.0+dfsg-2_all.deb ...
Unpacking r-bioc-gviz (1.50.0+dfsg-2) ...
Setting up r-bioc-gviz (1.50.0+dfsg-2) ...
1m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.50.0+dfsg-2']
1m25.6s INFO: Running scripts post_install
1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_install_exceptions']
1m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_install_exceptions']
1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'systemd-tmpfiles', '--cat-config']
1m25.6s DUMP:
chroot: failed to run command 'systemd-tmpfiles': No such file or directory
1m25.6s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'systemd-tmpfiles', '--cat-config']
1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'remove', 'r-bioc-gviz']
1m27.0s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax
javascript-common libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev
libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev
libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8 libfontconfig1
libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64
libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libhwasan0 libice6 libicu76 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap
libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2
liblerc4 liblsan0 liblua5.4-0 libnghttp2-14 libnghttp3-9 libnuma1
libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper2 libpixman-1-0 libpng16-16t64 libpsl5t64
libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db
libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev libtasn1-6 libtcl8.6
libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6
libtsan2 libubsan1 libuv1t64 libwebp7 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxss1 libxt6t64 libyaml-0-2 linux-libc-dev littler
node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase
r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome
r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb
r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass
r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-checkmate
r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace
r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table
r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest
r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr
r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options
r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable
r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools
r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-interp
r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr
r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice
r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet
r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr
r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales
r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr
r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite
r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml
readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
r-bioc-gviz
0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
After this operation, 7171 kB disk space will be freed.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51315 files and directories currently installed.)
Removing r-bioc-gviz (1.50.0+dfsg-2) ...
1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'remove', 'r-bioc-gviz']
1m27.0s INFO: Reinstalling after remove
1m27.0s INFO: Running scripts pre_install
1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_database-server']
1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_database-server']
1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_exceptions']
1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_exceptions']
1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_extras']
1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_extras']
1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture']
1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture']
1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy']
1m27.1s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
1m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy']
1m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy', 'r-bioc-gviz']
1m27.1s DUMP:
r-bioc-gviz:
Installed: (none)
Candidate: 1.50.0+dfsg-2
Version table:
1.50.0+dfsg-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
1m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy', 'r-bioc-gviz']
1m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.50.0+dfsg-2']
1m28.7s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Suggested packages:
r-bioc-biocstyle r-cran-testthat
The following NEW packages will be installed:
r-bioc-gviz
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/5168 kB of archives.
After this operation, 7171 kB of additional disk space will be used.
Selecting previously unselected package r-bioc-gviz.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51224 files and directories currently installed.)
Preparing to unpack .../r-bioc-gviz_1.50.0+dfsg-2_all.deb ...
Unpacking r-bioc-gviz (1.50.0+dfsg-2) ...
Setting up r-bioc-gviz (1.50.0+dfsg-2) ...
1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', 'install', 'r-bioc-gviz=1.50.0+dfsg-2']
1m28.7s INFO: Running scripts post_install
1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_install_exceptions']
1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_install_exceptions']
1m28.7s INFO: Running scripts pre_install
1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_database-server']
1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_database-server']
1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_exceptions']
1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_exceptions']
1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_extras']
1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_extras']
1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture']
1m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture']
1m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_install_foreign_architecture_i386']
1m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy']
1m28.9s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy']
1m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy', 'r-bioc-gviz']
1m28.9s DUMP:
r-bioc-gviz:
Installed: 1.50.0+dfsg-2
Candidate: 1.50.0+dfsg-2
Version table:
*** 1.50.0+dfsg-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
100 /var/lib/dpkg/status
1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-cache', 'policy', 'r-bioc-gviz']
1m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-gviz=1.50.0+dfsg-2']
1m30.5s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded.
Need to get 0 B/5168 kB of archives.
After this operation, 0 B of additional disk space will be used.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51315 files and directories currently installed.)
Preparing to unpack .../r-bioc-gviz_1.50.0+dfsg-2_all.deb ...
Unpacking r-bioc-gviz (1.50.0+dfsg-2) over (1.50.0+dfsg-2) ...
Setting up r-bioc-gviz (1.50.0+dfsg-2) ...
1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-gviz=1.50.0+dfsg-2']
1m30.5s INFO: Running scripts post_install
1m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_install_exceptions']
1m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_install_exceptions']
1m30.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
1m33.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
1m38.2s DEBUG: No broken symlinks as far as we can find.
1m41.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', '-ac', '--ignore-obsolete']
1m47.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', '-ac', '--ignore-obsolete']
1m47.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
1m47.1s DUMP:
0.15.6
1m47.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
1m47.1s INFO: Running adequate version 0.15.6 now.
1m47.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'r-bioc-gviz']
1m47.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'r-bioc-gviz']
1m47.3s INFO: Running scripts pre_remove
1m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
1m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
1m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
1m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
1m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
1m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
1m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_50_find_bad_permissions']
1m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_50_find_bad_permissions']
1m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_50_find_missing_copyright']
1m54.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_50_find_missing_copyright']
1m54.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_exceptions']
1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_exceptions']
1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_preseed_cleanup']
1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/pre_remove_preseed_cleanup']
1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
1m54.5s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-2
install ok installed bsdutils bsdutils 1:2.41-3
install ok installed ca-certificates ca-certificates 20241223
install ok installed coreutils coreutils 9.7-1
install ok installed dash dash 0.5.12-12
install ok installed dbconfig-common dbconfig-common 2.0.24
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed fontconfig fontconfig 2.15.0-2.3
install ok installed fontconfig-config fontconfig-config 2.15.0-2.3
install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8
install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8
install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1
install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3
install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed javascript-common javascript-common 12
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libasan8:amd64 libasan8 14.2.0-19
install ok installed libatomic1:amd64 libatomic1 14.2.0-19
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblas3:amd64 libblas3 3.12.1-2
install ok installed libblkid1:amd64 libblkid1 2.41-3
install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2
install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-4.2
install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc-dev-bin libc-dev-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libc6-dev:amd64 libc6-dev 2.41-6
install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1
install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0-1
install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278
install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1
install ok installed libexpat1:amd64 libexpat1 2.7.1-1
install ok installed libffi8:amd64 libffi8 3.4.7-1
install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3
install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1
install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1
install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-19
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19
install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.1-1
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2
install ok installed libgomp1:amd64 libgomp1 14.2.0-19
install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1
install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5
install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed libhwasan0:amd64 libhwasan0 14.2.0-19
install ok installed libice6:amd64 libice6 2:1.1.1-1
install ok installed libicu76:amd64 libicu76 76.1-3
install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2
install ok installed libitm1:amd64 libitm1 14.2.0-19
install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2
install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1
install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3
install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4
install ok installed libjs-d3 libjs-d3 3.5.17-4
install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2
install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-2
install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1
install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2
install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1
install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1
install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1
install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1
install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1.1
install ok installed libjs-modernizr libjs-modernizr 3.13.0-0.1
install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6
install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1
install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3
install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1
install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5
install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-5
install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5
install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5
install ok installed liblapack3:amd64 liblapack3 3.12.1-2
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3
install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2
install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5
install ok installed liblsan0:amd64 liblsan0 14.2.0-19
install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.7-1+b2
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-3
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1
install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1
install ok installed libnuma1:amd64 libnuma1 2.0.18-1+b1
install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-1
install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-1
install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-1
install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b2
install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b2
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3
install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1.1
install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7
install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1
install ok installed libquadmath0:amd64 libquadmath0 14.2.0-19
install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6
install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5
install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9
install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1
install ok installed libsm6:amd64 libsm6 2:1.2.6-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1
install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1
install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-19
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2
install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1
install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4
install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10
install ok installed libthai-data libthai-data 0.1.29-2
install ok installed libthai0:amd64 libthai0 0.1.29-2+b1
install ok installed libtiff6:amd64 libtiff6 4.7.0-3
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1
install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1
install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1
install ok installed libtsan2:amd64 libtsan2 14.2.0-19
install ok installed libubsan1:amd64 libubsan1 14.2.0-19
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libunistring5:amd64 libunistring5 1.3-2
install ok installed libuuid1:amd64 libuuid1 2.41-3
install ok installed libuv1t64:amd64 libuv1t64 1.50.0-2
install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1
install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1
install ok installed libx11-data libx11-data 2:1.8.12-1
install ok installed libxau6:amd64 libxau6 1:1.0.11-1
install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1
install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1
install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1
install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1
install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3
install ok installed libxft2:amd64 libxft2 2.3.6-1+b4
install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-0.4
install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1
install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3
install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed linux-libc-dev linux-libc-dev 6.12.21-1
install ok installed littler littler 0.3.21-1
install ok installed login login 1:4.16.0-2+really2.41-3
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.41-3
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2
install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5
install ok installed node-normalize.css node-normalize.css 8.0.1-5
install ok installed openssl openssl 3.5.0-1
install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1
install ok installed pandoc pandoc 3.1.11.1+ds-2
install ok installed pandoc-data pandoc-data 3.1.11.1-3
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed procps procps 2:4.0.4-7
install ok installed r-base-core r-base-core 4.4.3-1+b1
install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.68.0-2
install ok installed r-bioc-annotationfilter r-bioc-annotationfilter 1.30.0+dfsg-2
install ok installed r-bioc-biobase r-bioc-biobase 2.66.0-2
install ok installed r-bioc-biocfilecache r-bioc-biocfilecache 2.14.0+dfsg-2
install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2
install ok installed r-bioc-biocio r-bioc-biocio 1.16.0+dfsg-2
install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.40.0-2
install ok installed r-bioc-biomart r-bioc-biomart 2.62.1+dfsg-1
install ok installed r-bioc-biostrings r-bioc-biostrings 2.74.1+dfsg-2
install ok installed r-bioc-biovizbase r-bioc-biovizbase 1.54.0-2
install ok installed r-bioc-bsgenome r-bioc-bsgenome 1.74.0-2
install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.32.0+dfsg-2
install ok installed r-bioc-ensembldb r-bioc-ensembldb 2.30.0+dfsg-3
install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.42.3+dfsg-1
install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.13-2
install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.42.0-2
install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.58.0+dfsg-2
install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.58.0+dfsg-2
install ok installed r-bioc-gviz r-bioc-gviz 1.50.0+dfsg-2
install ok installed r-bioc-iranges r-bioc-iranges 2.40.1-2
install ok installed r-bioc-keggrest r-bioc-keggrest 1.46.0+dfsg-2
install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.18.1-1
install ok installed r-bioc-protgenerics r-bioc-protgenerics 1.38.0-2
install ok installed r-bioc-rhtslib r-bioc-rhtslib 3.2.0+dfsg-2
install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.22.0+dfsg-2
install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.66.0-2
install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.6.0+dfsg-2
install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-2
install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.6.2+dfsg-2
install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.36.0+dfsg-2
install ok installed r-bioc-ucsc.utils r-bioc-ucsc.utils 1.2.0+ds-2
install ok installed r-bioc-variantannotation r-bioc-variantannotation 1.52.0-2
install ok installed r-bioc-xvector r-bioc-xvector 0.46.0-2
install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.52.0+dfsg-2
install ok installed r-cran-abind r-cran-abind 1.4-8-1
install ok installed r-cran-acepack r-cran-acepack 1.6.1-1
install ok installed r-cran-askpass r-cran-askpass 1.2.1-1
install ok installed r-cran-backports r-cran-backports 1.5.0-2
install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3
install ok installed r-cran-bh r-cran-bh 1.84.0-1
install ok installed r-cran-bit r-cran-bit 4.6.0+dfsg-1
install ok installed r-cran-bit64 r-cran-bit64 4.6.0-1-1
install ok installed r-cran-bitops r-cran-bitops 1.0-9-1
install ok installed r-cran-blob r-cran-blob 1.2.4-1
install ok installed r-cran-bslib r-cran-bslib 0.9.0+dfsg-1
install ok installed r-cran-cachem r-cran-cachem 1.1.0-1
install ok installed r-cran-checkmate r-cran-checkmate 2.3.2-1
install ok installed r-cran-chron r-cran-chron 2.3-62-1
install ok installed r-cran-cli r-cran-cli 3.6.4-1
install ok installed r-cran-cluster r-cran-cluster 2.1.8.1-1
install ok installed r-cran-codetools r-cran-codetools 0.2-20-1
install ok installed r-cran-colorspace r-cran-colorspace 2.1-1+dfsg-1
install ok installed r-cran-commonmark r-cran-commonmark 1.9.5-1
install ok installed r-cran-cpp11 r-cran-cpp11 0.5.2-1
install ok installed r-cran-crayon r-cran-crayon 1.5.3-1
install ok installed r-cran-curl r-cran-curl 6.2.1+dfsg-1
install ok installed r-cran-data.table r-cran-data.table 1.17.0+dfsg-1
install ok installed r-cran-dbi r-cran-dbi 1.2.3-1
install ok installed r-cran-dbplyr r-cran-dbplyr 2.5.0+dfsg-1
install ok installed r-cran-deldir r-cran-deldir 2.0-4-1
install ok installed r-cran-dichromat r-cran-dichromat 1:2.0-0.1-1
install ok installed r-cran-digest r-cran-digest 0.6.37-1
install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-4
install ok installed r-cran-evaluate r-cran-evaluate 1.0.3-1
install ok installed r-cran-fansi r-cran-fansi 1.0.6-1
install ok installed r-cran-farver r-cran-farver 2.1.2-1
install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-1
install ok installed r-cran-filelock r-cran-filelock 1.0.3-1
install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.3-1
install ok installed r-cran-foreign r-cran-foreign 0.8.90-1
install ok installed r-cran-formatr r-cran-formatr 1.14-2
install ok installed r-cran-formula r-cran-formula 1.2-5-1
install ok installed r-cran-fs r-cran-fs 1.6.5+dfsg-1
install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4
install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3
install ok installed r-cran-generics r-cran-generics 0.1.3-1
install ok installed r-cran-ggplot2 r-cran-ggplot2 3.5.1+dfsg-1
install ok installed r-cran-glue r-cran-glue 1.8.0-1
install ok installed r-cran-gridextra r-cran-gridextra 2.3-3
install ok installed r-cran-gtable r-cran-gtable 0.3.6+dfsg-1
install ok installed r-cran-highr r-cran-highr 0.11+dfsg-1
install ok installed r-cran-hmisc r-cran-hmisc 5.2-3-1
install ok installed r-cran-hms r-cran-hms 1.1.3-1
install ok installed r-cran-htmltable r-cran-htmltable 2.4.3-1
install ok installed r-cran-htmltools r-cran-htmltools 0.5.8.1-1
install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-1
install ok installed r-cran-httpuv r-cran-httpuv 1.6.15+dfsg-1
install ok installed r-cran-httr r-cran-httr 1.4.7+dfsg-1
install ok installed r-cran-httr2 r-cran-httr2 1.1.1-1
install ok installed r-cran-interp r-cran-interp 1.1-6-1
install ok installed r-cran-isoband r-cran-isoband 0.2.7-1
install ok installed r-cran-jpeg r-cran-jpeg 0.1-10-1
install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-4
install ok installed r-cran-jsonlite r-cran-jsonlite 1.9.1+dfsg-1
install ok installed r-cran-knitr r-cran-knitr 1.50+dfsg-1
install ok installed r-cran-labeling r-cran-labeling 0.4.3-1
install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2
install ok installed r-cran-later r-cran-later 1.4.1+dfsg-1
install ok installed r-cran-lattice r-cran-lattice 0.22-7-1
install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-30-1
install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.2-1+b1
install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1
install ok installed r-cran-littler r-cran-littler 0.3.21-1
install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1
install ok installed r-cran-mass r-cran-mass 7.3-65-1
install ok installed r-cran-matrix r-cran-matrix 1.7-3-1
install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-1
install ok installed r-cran-memoise r-cran-memoise 2.0.1-1
install ok installed r-cran-mgcv r-cran-mgcv 1.9-3-1
install ok installed r-cran-mime r-cran-mime 0.12-2
install ok installed r-cran-munsell r-cran-munsell 0.5.1-1
install ok installed r-cran-nlme r-cran-nlme 3.1.168-1
install ok installed r-cran-nnet r-cran-nnet 7.3-20-1
install ok installed r-cran-openssl r-cran-openssl 2.3.2+dfsg-1
install ok installed r-cran-pillar r-cran-pillar 1.10.1+dfsg-1
install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2
install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1
install ok installed r-cran-plogr r-cran-plogr 0.2.0-3
install ok installed r-cran-png r-cran-png 0.1-8-1+b1
install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-1
install ok installed r-cran-progress r-cran-progress 1.2.3-1
install ok installed r-cran-promises r-cran-promises 1.3.2+dfsg-1
install ok installed r-cran-purrr r-cran-purrr 1.0.4-1
install ok installed r-cran-r6 r-cran-r6 2.6.1-1
install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.3-1
install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1
install ok installed r-cran-rcpp r-cran-rcpp 1.0.14-1
install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.4.0.2-1
install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.16+dfsg-1
install ok installed r-cran-restfulr r-cran-restfulr 0.0.15-1
install ok installed r-cran-rjson r-cran-rjson 0.2.23-1
install ok installed r-cran-rlang r-cran-rlang 1.1.5-1
install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.29+dfsg-1
install ok installed r-cran-rpart r-cran-rpart 4.1.24-1
install ok installed r-cran-rsqlite r-cran-rsqlite 2.3.9-1
install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.17.1-1
install ok installed r-cran-sass r-cran-sass 0.4.9+dfsg-1
install ok installed r-cran-scales r-cran-scales 1.3.0-1
install ok installed r-cran-shiny r-cran-shiny 1.10.0+dfsg-2
install ok installed r-cran-snow r-cran-snow 1:0.4.4-2
install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-1-1
install ok installed r-cran-stringi r-cran-stringi 1.8.4-1+b1
install ok installed r-cran-stringr r-cran-stringr 1.5.1-1
install ok installed r-cran-survival r-cran-survival 3.8-3-1
install ok installed r-cran-sys r-cran-sys 3.4.3-1
install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-3
install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1
install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-1
install ok installed r-cran-tinytex r-cran-tinytex 0.56-1
install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1
install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1
install ok installed r-cran-viridis r-cran-viridis 0.6.5-1
install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2
install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-1
install ok installed r-cran-xfun r-cran-xfun 0.51+dfsg-1
install ok installed r-cran-xml r-cran-xml 3.99-0.18-1
install ok installed r-cran-xml2 r-cran-xml2 1.3.8-1
install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2
install ok installed r-cran-yaml r-cran-yaml 2.3.10-1
install ok installed readline-common readline-common 8.2-6
install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1
install ok installed sed sed 4.9-2
install ok installed sensible-utils sensible-utils 0.0.24
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed ucf ucf 3.0051
install ok installed unzip unzip 6.0-29
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-3
install ok installed x11-common x11-common 1:7.7+24
install ok installed xdg-utils xdg-utils 1.2.1-2
install ok installed zip zip 3.0-14
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1
1m54.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
1m54.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'javascript-common', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'littler', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-httr2', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gviz']
1m59.1s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
ca-certificates fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
fonts-mathjax javascript-common libasan8 libatomic1 libblas3 libboost-dev
libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2
libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libffi8
libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5
libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libhwasan0 libice6 libicu76 libidn2-0 libitm1 libjbig0
libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 liblua5.4-0
libnghttp2-14 libnghttp3-9 libnuma1 libp11-kit0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-14-dev
libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libyaml-0-2
linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css
openssl pandoc pandoc-data r-base-core r-bioc-annotationdbi
r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache
r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart
r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray
r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass
r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-checkmate
r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace
r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table
r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest
r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr
r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options
r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable
r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools
r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-interp
r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr
r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice
r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet
r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr
r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown
r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales
r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr
r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite
r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml
readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 0 newly installed, 292 to remove and 0 not upgraded.
After this operation, 975 MB disk space will be freed.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 51315 files and directories currently installed.)
Removing r-bioc-gviz (1.50.0+dfsg-2) ...
Removing r-bioc-biovizbase (1.54.0-2) ...
Removing r-cran-hmisc (5.2-3-1) ...
Removing r-cran-rpart (4.1.24-1) ...
Removing r-cran-survival (3.8-3-1) ...
Removing r-cran-latticeextra (0.6-30-1) ...
Removing r-cran-interp (1.1-6-1) ...
Removing r-cran-rcppeigen (0.3.4.0.2-1) ...
Removing r-bioc-variantannotation (1.52.0-2) ...
Removing r-bioc-ensembldb (2.30.0+dfsg-3) ...
Removing r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
Removing r-bioc-bsgenome (1.74.0-2) ...
Removing r-cran-htmltable (2.4.3-1) ...
Removing r-cran-htmlwidgets (1.6.4+dfsg-1) ...
Removing r-cran-rmarkdown (2.29+dfsg-1) ...
Removing r-cran-shiny (1.10.0+dfsg-2) ...
Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
Removing r-cran-knitr (1.50+dfsg-1) ...
Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
Removing libjs-bootstrap (3.4.1+dfsg-3) ...
Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
Removing libjs-mathjax (2.7.9+dfsg-1) ...
Removing fonts-mathjax (2.7.9+dfsg-1) ...
Removing r-cran-bslib (0.9.0+dfsg-1) ...
Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ...
Removing libjs-popper.js (1.16.1+ds-6) ...
Removing javascript-common (12) ...
Removing r-cran-viridis (0.6.5-1) ...
Removing r-cran-ggplot2 (3.5.1+dfsg-1) ...
Removing r-cran-mgcv (1.9-3-1) ...
Removing r-bioc-biomart (2.62.1+dfsg-1) ...
Removing r-bioc-annotationdbi (1.68.0-2) ...
Removing r-bioc-keggrest (1.46.0+dfsg-2) ...
Removing r-bioc-annotationfilter (1.30.0+dfsg-2) ...
Removing pandoc (3.1.11.1+ds-2) ...
Removing r-cran-acepack (1.6.1-1) ...
Removing r-cran-data.table (1.17.0+dfsg-1) ...
Removing r-bioc-biocfilecache (2.14.0+dfsg-2) ...
Removing r-cran-dbplyr (2.5.0+dfsg-1) ...
Removing r-cran-tidyr (1.3.1-1) ...
Removing r-cran-stringr (1.5.1-1) ...
Removing r-cran-stringi (1.8.4-1+b1) ...
Removing r-cran-jpeg (0.1-10-1) ...
Removing libjs-d3 (3.5.17-4) ...
Removing libjs-es5-shim (4.6.7-2) ...
Removing r-cran-highr (0.11+dfsg-1) ...
Removing libjs-highlight.js (9.18.5+dfsg1-2) ...
Removing r-cran-jquerylib (0.1.4+dfsg-4) ...
Removing r-cran-xml2 (1.3.8-1) ...
Removing libjs-jquery-datatables (1.11.5+dfsg-2) ...
Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
Removing libjs-jquery-ui (1.13.2+dfsg-1) ...
Removing libjs-json (0~20221030+~1.0.8-1) ...
Removing libjs-microplugin.js (0.0.3+dfsg-1.1) ...
Removing libjs-modernizr (3.13.0-0.1) ...
Removing libjs-prettify (2015.12.04+dfsg-1.1) ...
Removing libjs-sifter.js (0.6.0+dfsg-3) ...
Removing liblua5.4-0:amd64 (5.4.7-1+b2) ...
Removing libnuma1:amd64 (2.0.18-1+b1) ...
Removing r-cran-png (0.1-8-1+b1) ...
Removing r-cran-httpuv (1.6.15+dfsg-1) ...
Removing r-cran-sass (0.4.9+dfsg-1) ...
Removing r-cran-fs (1.6.5+dfsg-1) ...
Removing libuv1t64:amd64 (1.50.0-2) ...
Removing libyaml-0-2:amd64 (0.2.5-2) ...
Removing littler (0.3.21-1) ...
Removing node-bootstrap-sass (3.4.3-2) ...
Removing node-html5shiv (3.7.3+dfsg-5) ...
Removing node-normalize.css (8.0.1-5) ...
Removing pandoc-data (3.1.11.1-3) ...
Removing r-bioc-protgenerics (1.38.0-2) ...
Removing r-cran-httr2 (1.1.1-1) ...
Removing r-cran-checkmate (2.3.2-1) ...
Removing r-cran-backports (1.5.0-2) ...
Removing r-cran-fontawesome (0.5.3-1) ...
Removing r-cran-htmltools (0.5.8.1-1) ...
Removing r-cran-base64enc (0.1-3-3) ...
Removing r-cran-rsqlite (2.3.9-1) ...
Removing r-cran-bit64 (4.6.0-1-1) ...
Removing r-cran-bit (4.6.0+dfsg-1) ...
Removing r-cran-blob (1.2.4-1) ...
Removing r-cran-memoise (2.0.1-1) ...
Removing r-cran-cachem (1.1.0-1) ...
Removing r-cran-chron (2.3-62-1) ...
Removing r-cran-dplyr (1.1.4-4) ...
Removing r-cran-tidyselect (1.2.1+dfsg-1) ...
Removing r-cran-tibble (3.2.1+dfsg-3) ...
Removing r-cran-scales (1.3.0-1) ...
Removing r-cran-cluster (2.1.8.1-1) ...
Removing r-cran-munsell (0.5.1-1) ...
Removing r-cran-colorspace (2.1-1+dfsg-1) ...
Removing r-cran-commonmark (1.9.5-1) ...
Removing r-cran-progress (1.2.3-1) ...
Removing r-cran-dbi (1.2.3-1) ...
Removing r-cran-deldir (2.0-4-1) ...
Removing r-cran-dichromat (1:2.0-0.1-1) ...
Removing r-cran-digest (0.6.37-1) ...
Removing r-cran-evaluate (1.0.3-1) ...
Removing r-cran-fansi (1.0.6-1) ...
Removing r-cran-farver (2.1.2-1) ...
Removing r-cran-filelock (1.0.3-1) ...
Removing r-cran-foreign (0.8.90-1) ...
Removing r-cran-formula (1.2-5-1) ...
Removing r-cran-generics (0.1.3-1) ...
Removing r-cran-pillar (1.10.1+dfsg-1) ...
Removing r-cran-purrr (1.0.4-1) ...
Removing r-cran-gridextra (2.3-3) ...
Removing r-cran-gtable (0.3.6+dfsg-1) ...
Removing r-cran-hms (1.1.3-1) ...
Removing r-cran-isoband (0.2.7-1) ...
Removing r-cran-labeling (0.4.3-1) ...
Removing r-cran-nlme (3.1.168-1) ...
Removing r-cran-lazyeval (0.2.2-1+b1) ...
Removing r-cran-mass (7.3-65-1) ...
Removing r-cran-nnet (7.3-20-1) ...
Removing r-cran-pkgconfig (2.0.3-2) ...
Removing r-cran-plogr (0.2.0-3) ...
Removing r-cran-prettyunits (1.2.0-1) ...
Removing r-cran-rappdirs (0.3.3-1) ...
Removing r-cran-rcolorbrewer (1.1-3-1) ...
Removing r-cran-rstudioapi (0.17.1-1) ...
Removing r-cran-sourcetools (0.1.7-1-1) ...
Removing r-cran-tinytex (0.56-1) ...
Removing r-cran-utf8 (1.2.4-1) ...
Removing r-cran-viridislite (0.4.2-2) ...
Removing r-cran-withr (3.0.2+dfsg-1) ...
Removing r-cran-xfun (0.51+dfsg-1) ...
Removing r-cran-xtable (1:1.8-4-2) ...
Removing r-bioc-rtracklayer (1.66.0-2) ...
Removing r-bioc-genomicalignments (1.42.0-2) ...
Removing r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
Removing r-bioc-delayedarray (0.32.0+dfsg-2) ...
Removing r-bioc-sparsearray (1.6.2+dfsg-2) ...
Removing r-bioc-s4arrays (1.6.0+dfsg-2) ...
Removing r-cran-abind (1.4-8-1) ...
Removing r-bioc-rsamtools (2.22.0+dfsg-2) ...
Removing r-bioc-biocparallel (1.40.0-2) ...
Removing r-cran-snow (1:0.4.4-2) ...
Removing r-cran-promises (1.3.2+dfsg-1) ...
Removing r-cran-bh (1.84.0-1) ...
Removing libboost-dev:amd64 (1.83.0.2+b2) ...
Removing libboost1.83-dev:amd64 (1.83.0-4.2) ...
Removing libstdc++-14-dev:amd64 (14.2.0-19) ...
Removing libgcc-14-dev:amd64 (14.2.0-19) ...
Removing libasan8:amd64 (14.2.0-19) ...
Removing r-cran-restfulr (0.0.15-1) ...
Removing r-cran-rcurl (1.98-1.16+dfsg-1) ...
Removing r-bioc-biostrings (2.74.1+dfsg-2) ...
Removing r-bioc-genomicranges (1.58.0+dfsg-2) ...
Removing r-bioc-xvector (0.46.0-2) ...
Removing r-bioc-rhtslib (3.2.0+dfsg-2) ...
Removing r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Removing libc6-dev:amd64 (2.41-6) ...
Removing libc-dev-bin (2.41-6) ...
Removing libcrypt-dev:amd64 (1:4.4.38-1) ...
Removing libhwasan0:amd64 (14.2.0-19) ...
Removing libitm1:amd64 (14.2.0-19) ...
Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Removing liblsan0:amd64 (14.2.0-19) ...
Removing libquadmath0:amd64 (14.2.0-19) ...
Removing libtsan2:amd64 (14.2.0-19) ...
Removing libubsan1:amd64 (14.2.0-19) ...
Removing r-cran-xml (3.99-0.18-1) ...
Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ...
Removing linux-libc-dev (6.12.21-1) ...
Removing r-bioc-biobase (2.66.0-2) ...
Removing r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
Removing r-bioc-ucsc.utils (1.2.0+ds-2) ...
Removing r-bioc-iranges (2.40.1-2) ...
Removing r-bioc-biocio (1.16.0+dfsg-2) ...
Removing r-bioc-genomeinfodbdata (1.2.13-2) ...
Removing r-bioc-matrixgenerics (1.18.1-1) ...
Removing r-cran-httr (1.4.7+dfsg-1) ...
Removing r-cran-openssl (2.3.2+dfsg-1) ...
Removing r-cran-askpass (1.2.1-1) ...
Removing r-cran-bitops (1.0-9-1) ...
Removing r-cran-vctrs (0.6.5-1) ...
Removing r-cran-codetools (0.2-20-1) ...
Removing r-cran-cpp11 (0.5.2-1) ...
Removing r-cran-crayon (1.5.3-1) ...
Removing r-cran-curl (6.2.1+dfsg-1) ...
Removing r-cran-fastmap (1.2.0-1) ...
Removing r-cran-futile.logger (1.4.3-4) ...
Removing r-cran-lambda.r (1.2.4-2) ...
Removing r-cran-formatr (1.14-2) ...
Removing r-cran-futile.options (1.0.1-3) ...
Removing r-cran-lifecycle (1.0.4+dfsg-1) ...
Removing r-cran-glue (1.8.0-1) ...
Removing r-cran-jsonlite (1.9.1+dfsg-1) ...
Removing r-cran-later (1.4.1+dfsg-1) ...
Removing r-cran-magrittr (2.0.3-1) ...
Removing r-cran-matrixstats (1.5.0-1) ...
Removing r-cran-mime (0.12-2) ...
Removing r-cran-r6 (2.6.1-1) ...
Removing r-cran-rjson (0.2.23-1) ...
Removing r-cran-rlang (1.1.5-1) ...
Removing r-cran-sys (3.4.3-1) ...
Removing r-cran-yaml (2.3.10-1) ...
Removing rpcsvc-proto (1.4.3-1) ...
Removing r-cran-matrix (1.7-3-1) ...
Removing r-cran-rcpp (1.0.14-1) ...
Removing r-bioc-s4vectors (0.44.0+dfsg-2) ...
Removing r-bioc-biocgenerics (0.52.0-2) ...
Removing r-cran-cli (3.6.4-1) ...
Removing r-cran-lattice (0.22-7-1) ...
Removing r-cran-littler (0.3.21-1) ...
Removing r-cran-pkgkitten (0.2.4-1) ...
Removing r-base-core (4.4.3-1+b1) ...
Removing ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Removing libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Removing libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Removing libpango-1.0-0:amd64 (1.56.3-1) ...
Removing fontconfig (2.15.0-2.3) ...
Removing libtk8.6:amd64 (8.6.16-1) ...
Removing libxft2:amd64 (2.3.6-1+b4) ...
Removing libcairo2:amd64 (1.18.4-1+b1) ...
Removing libfontconfig1:amd64 (2.15.0-2.3) ...
Removing fontconfig-config (2.15.0-2.3) ...
Removing fonts-dejavu-core (2.37-8) ...
Removing fonts-dejavu-mono (2.37-8) ...
Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Removing libglib2.0-0t64:amd64 (2.84.1-1) ...
Removing libatomic1:amd64 (14.2.0-19) ...
Removing liblapack3:amd64 (3.12.1-2) ...
Removing libblas3:amd64 (3.12.1-2) ...
Removing libfreetype6:amd64 (2.13.3+dfsg-1) ...
Removing libcurl4t64:amd64 (8.13.0-1) ...
Removing libbrotli1:amd64 (1.1.0-2+b7) ...
Removing libtirpc3t64:amd64 (1.3.6+ds-1) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Removing libgssapi-krb5-2:amd64 (1.21.3-5) ...
Removing libkrb5-3:amd64 (1.21.3-5) ...
Removing libcom-err2:amd64 (1.47.2-1+b1) ...
Removing libthai0:amd64 (0.1.29-2+b1) ...
Removing libdatrie1:amd64 (0.2.13-3+b1) ...
Removing libtiff6:amd64 (4.7.0-3) ...
Removing libdeflate0:amd64 (1.23-1+b1) ...
Removing libexpat1:amd64 (2.7.1-1) ...
Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Removing libgnutls30t64:amd64 (3.8.9-2) ...
Removing libp11-kit0:amd64 (0.25.5-3) ...
Removing libffi8:amd64 (3.4.7-1) ...
Removing libfribidi0:amd64 (1.0.16-1) ...
Removing libgfortran5:amd64 (14.2.0-19) ...
Removing libgomp1:amd64 (14.2.0-19) ...
Removing libgraphite2-3:amd64 (1.3.14-2+b1) ...
Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Removing libsm6:amd64 (2:1.2.6-1) ...
Removing libice6:amd64 (2:1.1.1-1) ...
Removing libicu76:amd64 (76.1-3) ...
Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Removing libidn2-0:amd64 (2.3.8-2) ...
Removing libjbig0:amd64 (2.1-6.1+b2) ...
Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Removing libk5crypto3:amd64 (1.21.3-5) ...
Removing libkeyutils1:amd64 (1.6.3-5) ...
Removing libkrb5support0:amd64 (1.21.3-5) ...
Removing libldap2:amd64 (2.6.9+dfsg-2) ...
Removing liblerc4:amd64 (4.0.0+ds-5) ...
Removing libnghttp2-14:amd64 (1.64.0-1) ...
Removing libnghttp3-9:amd64 (1.8.0-1) ...
Removing libpaper-utils (2.2.5-0.3+b2) ...
Removing libpaper2:amd64 (2.2.5-0.3+b2) ...
Removing libpixman-1-0:amd64 (0.44.0-3) ...
Removing libpng16-16t64:amd64 (1.6.47-1.1) ...
Removing libreadline8t64:amd64 (8.2-6) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Removing libwebp7:amd64 (1.5.0-0.1) ...
Removing libsharpyuv0:amd64 (1.5.0-0.1) ...
Removing libssh2-1t64:amd64 (1.11.1-1) ...
Removing libtasn1-6:amd64 (4.20.0-2) ...
Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Removing libthai-data (0.1.29-2) ...
Removing libtirpc-common (1.3.6+ds-1) ...
Removing libunistring5:amd64 (1.3-2) ...
Removing libxss1:amd64 (1:1.2.3-1+b3) ...
Removing libxrender1:amd64 (1:0.9.12-1) ...
Removing libxcb-shm0:amd64 (1.17.0-2+b1) ...
Removing libxcb-render0:amd64 (1.17.0-2+b1) ...
Removing libxext6:amd64 (2:1.3.4-1+b3) ...
Removing openssl (3.5.0-1) ...
Removing readline-common (8.2-6) ...
Removing unzip (6.0-29) ...
Removing x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of stop.
Removing xdg-utils (1.2.1-2) ...
Removing zip (3.0-14) ...
Removing libx11-6:amd64 (2:1.8.12-1) ...
Removing libx11-data (2:1.8.12-1) ...
Removing libxcb1:amd64 (1.17.0-2+b1) ...
Removing libxau6:amd64 (1:1.0.11-1) ...
Removing libxdmcp6:amd64 (1:1.1.5-1) ...
Processing triggers for libc-bin (2.41-6) ...
1m59.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'javascript-common', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'littler', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-httr2', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gviz']
1m59.1s INFO: Running scripts post_remove
1m59.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_remove_cleanup']
1m59.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_remove_cleanup']
1m59.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_remove_exceptions']
1m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_remove_exceptions']
1m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'javascript-common', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'littler', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-httr2', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64']
1m59.8s DUMP:
(Reading database ... 5525 files and directories currently installed.)
Purging configuration files for ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Purging configuration files for fontconfig (2.15.0-2.3) ...
Purging configuration files for fontconfig-config (2.15.0-2.3) ...
Purging configuration files for fonts-dejavu-core (2.37-8) ...
Purging configuration files for fonts-dejavu-mono (2.37-8) ...
Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed
dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed
Purging configuration files for javascript-common (12) ...
dpkg: warning: ignoring request to remove libasan8 which isn't installed
dpkg: warning: ignoring request to remove libatomic1 which isn't installed
dpkg: warning: ignoring request to remove libblas3 which isn't installed
dpkg: warning: ignoring request to remove libboost-dev which isn't installed
dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed
dpkg: warning: ignoring request to remove libbrotli1 which isn't installed
dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed
dpkg: warning: ignoring request to remove libc6-dev which isn't installed
dpkg: warning: ignoring request to remove libcairo2 which isn't installed
dpkg: warning: ignoring request to remove libcom-err2 which isn't installed
Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ...
dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed
dpkg: warning: ignoring request to remove libdatrie1 which isn't installed
dpkg: warning: ignoring request to remove libdeflate0 which isn't installed
dpkg: warning: ignoring request to remove libexpat1 which isn't installed
dpkg: warning: ignoring request to remove libffi8 which isn't installed
dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed
dpkg: warning: ignoring request to remove libfreetype6 which isn't installed
dpkg: warning: ignoring request to remove libfribidi0 which isn't installed
dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed
dpkg: warning: ignoring request to remove libgfortran5 which isn't installed
Purging configuration files for libglib2.0-0t64:amd64 (2.84.1-1) ...
dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed
dpkg: warning: ignoring request to remove libgomp1 which isn't installed
dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed
Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ...
dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed
dpkg: warning: ignoring request to remove libhwasan0 which isn't installed
dpkg: warning: ignoring request to remove libice6 which isn't installed
dpkg: warning: ignoring request to remove libicu76 which isn't installed
dpkg: warning: ignoring request to remove libidn2-0 which isn't installed
dpkg: warning: ignoring request to remove libitm1 which isn't installed
dpkg: warning: ignoring request to remove libjbig0 which isn't installed
dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed
dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed
Purging configuration files for libjs-bootstrap4 (4.6.1+dfsg1-4) ...
dpkg: warning: ignoring request to remove libjs-d3 which isn't installed
dpkg: warning: ignoring request to remove libjs-es5-shim which isn't installed
dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed
Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed
dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which isn't installed
dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed
dpkg: warning: ignoring request to remove libjs-json which isn't installed
dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed
dpkg: warning: ignoring request to remove libjs-microplugin.js which isn't installed
dpkg: warning: ignoring request to remove libjs-modernizr which isn't installed
Purging configuration files for libjs-popper.js (1.16.1+ds-6) ...
dpkg: warning: ignoring request to remove libjs-prettify which isn't installed
dpkg: warning: ignoring request to remove libjs-sifter.js which isn't installed
dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which isn't installed
dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed
dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed
dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed
dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed
dpkg: warning: ignoring request to remove liblapack3 which isn't installed
dpkg: warning: ignoring request to remove libldap2 which isn't installed
dpkg: warning: ignoring request to remove liblerc4 which isn't installed
dpkg: warning: ignoring request to remove liblsan0 which isn't installed
dpkg: warning: ignoring request to remove liblua5.4-0 which isn't installed
dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed
dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed
dpkg: warning: ignoring request to remove libnuma1 which isn't installed
dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed
dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpaper-utils which isn't installed
Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b2) ...
dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed
dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed
dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed
dpkg: warning: ignoring request to remove libquadmath0 which isn't installed
Purging configuration files for libreadline8t64:amd64 (8.2-6) ...
dpkg: warning: ignoring request to remove librtmp1 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed
dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed
dpkg: warning: ignoring request to remove libsm6 which isn't installed
dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed
dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed
dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed
dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed
dpkg: warning: ignoring request to remove libthai-data which isn't installed
dpkg: warning: ignoring request to remove libthai0 which isn't installed
dpkg: warning: ignoring request to remove libtiff6 which isn't installed
Purging configuration files for libtirpc-common (1.3.6+ds-1) ...
Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ...
dpkg: warning: ignoring request to remove libtk8.6 which isn't installed
dpkg: warning: ignoring request to remove libtsan2 which isn't installed
dpkg: warning: ignoring request to remove libubsan1 which isn't installed
dpkg: warning: ignoring request to remove libunistring5 which isn't installed
dpkg: warning: ignoring request to remove libuv1t64 which isn't installed
dpkg: warning: ignoring request to remove libwebp7 which isn't installed
dpkg: warning: ignoring request to remove libx11-6 which isn't installed
dpkg: warning: ignoring request to remove libx11-data which isn't installed
dpkg: warning: ignoring request to remove libxau6 which isn't installed
dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed
dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed
dpkg: warning: ignoring request to remove libxcb1 which isn't installed
dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed
dpkg: warning: ignoring request to remove libxext6 which isn't installed
dpkg: warning: ignoring request to remove libxft2 which isn't installed
dpkg: warning: ignoring request to remove libxml2 which isn't installed
dpkg: warning: ignoring request to remove libxrender1 which isn't installed
dpkg: warning: ignoring request to remove libxss1 which isn't installed
dpkg: warning: ignoring request to remove libxt6t64 which isn't installed
dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed
dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed
dpkg: warning: ignoring request to remove littler which isn't installed
dpkg: warning: ignoring request to remove node-bootstrap-sass which isn't installed
dpkg: warning: ignoring request to remove node-html5shiv which isn't installed
dpkg: warning: ignoring request to remove node-normalize.css which isn't installed
Purging configuration files for openssl (3.5.0-1) ...
dpkg: warning: ignoring request to remove pandoc which isn't installed
dpkg: warning: ignoring request to remove pandoc-data which isn't installed
Purging configuration files for r-base-core (4.4.3-1+b1) ...
dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed
dpkg: warning: ignoring request to remove r-bioc-annotationfilter which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biocfilecache which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biocio which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biomart which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed
dpkg: warning: ignoring request to remove r-bioc-biovizbase which isn't installed
dpkg: warning: ignoring request to remove r-bioc-bsgenome which isn't installed
dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed
dpkg: warning: ignoring request to remove r-bioc-ensembldb which isn't installed
dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed
dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed
dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed
dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed
dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed
dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed
dpkg: warning: ignoring request to remove r-bioc-keggrest which isn't installed
dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-protgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed
dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed
dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed
dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed
dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed
dpkg: warning: ignoring request to remove r-bioc-ucsc.utils which isn't installed
dpkg: warning: ignoring request to remove r-bioc-variantannotation which isn't installed
dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed
dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed
dpkg: warning: ignoring request to remove r-cran-abind which isn't installed
dpkg: warning: ignoring request to remove r-cran-acepack which isn't installed
dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed
dpkg: warning: ignoring request to remove r-cran-backports which isn't installed
dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed
dpkg: warning: ignoring request to remove r-cran-bh which isn't installed
dpkg: warning: ignoring request to remove r-cran-bit which isn't installed
dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed
dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed
dpkg: warning: ignoring request to remove r-cran-blob which isn't installed
dpkg: warning: ignoring request to remove r-cran-bslib which isn't installed
dpkg: warning: ignoring request to remove r-cran-cachem which isn't installed
dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed
dpkg: warning: ignoring request to remove r-cran-chron which isn't installed
dpkg: warning: ignoring request to remove r-cran-cli which isn't installed
dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed
dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed
dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed
dpkg: warning: ignoring request to remove r-cran-commonmark which isn't installed
dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed
dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed
dpkg: warning: ignoring request to remove r-cran-curl which isn't installed
dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed
dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed
dpkg: warning: ignoring request to remove r-cran-dbplyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-deldir which isn't installed
dpkg: warning: ignoring request to remove r-cran-dichromat which isn't installed
dpkg: warning: ignoring request to remove r-cran-digest which isn't installed
dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed
dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed
dpkg: warning: ignoring request to remove r-cran-farver which isn't installed
dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed
dpkg: warning: ignoring request to remove r-cran-filelock which isn't installed
dpkg: warning: ignoring request to remove r-cran-fontawesome which isn't installed
dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed
dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed
dpkg: warning: ignoring request to remove r-cran-formula which isn't installed
dpkg: warning: ignoring request to remove r-cran-fs which isn't installed
dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed
dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed
dpkg: warning: ignoring request to remove r-cran-generics which isn't installed
dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed
dpkg: warning: ignoring request to remove r-cran-glue which isn't installed
dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed
dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed
dpkg: warning: ignoring request to remove r-cran-highr which isn't installed
dpkg: warning: ignoring request to remove r-cran-hmisc which isn't installed
dpkg: warning: ignoring request to remove r-cran-hms which isn't installed
dpkg: warning: ignoring request to remove r-cran-htmltable which isn't installed
dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed
dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed
dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed
dpkg: warning: ignoring request to remove r-cran-httr which isn't installed
dpkg: warning: ignoring request to remove r-cran-httr2 which isn't installed
dpkg: warning: ignoring request to remove r-cran-interp which isn't installed
dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed
dpkg: warning: ignoring request to remove r-cran-jpeg which isn't installed
dpkg: warning: ignoring request to remove r-cran-jquerylib which isn't installed
dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed
dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed
dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed
dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed
dpkg: warning: ignoring request to remove r-cran-later which isn't installed
dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed
dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed
dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed
dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed
dpkg: warning: ignoring request to remove r-cran-littler which isn't installed
dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed
dpkg: warning: ignoring request to remove r-cran-mass which isn't installed
dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed
dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed
dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed
dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed
dpkg: warning: ignoring request to remove r-cran-mime which isn't installed
dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed
dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed
dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed
dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed
dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed
dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed
dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed
dpkg: warning: ignoring request to remove r-cran-plogr which isn't installed
dpkg: warning: ignoring request to remove r-cran-png which isn't installed
dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed
dpkg: warning: ignoring request to remove r-cran-progress which isn't installed
dpkg: warning: ignoring request to remove r-cran-promises which isn't installed
dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed
dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed
dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed
dpkg: warning: ignoring request to remove r-cran-rcurl which isn't installed
dpkg: warning: ignoring request to remove r-cran-restfulr which isn't installed
dpkg: warning: ignoring request to remove r-cran-rjson which isn't installed
dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed
dpkg: warning: ignoring request to remove r-cran-rmarkdown which isn't installed
dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed
dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed
dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed
dpkg: warning: ignoring request to remove r-cran-sass which isn't installed
dpkg: warning: ignoring request to remove r-cran-scales which isn't installed
dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed
dpkg: warning: ignoring request to remove r-cran-snow which isn't installed
dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed
dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed
dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed
dpkg: warning: ignoring request to remove r-cran-survival which isn't installed
dpkg: warning: ignoring request to remove r-cran-sys which isn't installed
dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed
dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed
dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed
dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed
dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed
dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed
dpkg: warning: ignoring request to remove r-cran-viridis which isn't installed
dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed
dpkg: warning: ignoring request to remove r-cran-withr which isn't installed
dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed
dpkg: warning: ignoring request to remove r-cran-xml which isn't installed
dpkg: warning: ignoring request to remove r-cran-xml2 which isn't installed
dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed
dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed
Purging configuration files for readline-common (8.2-6) ...
dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed
dpkg: warning: ignoring request to remove unzip which isn't installed
Purging configuration files for x11-common (1:7.7+24) ...
dpkg: warning: ignoring request to remove xdg-utils which isn't installed
dpkg: warning: ignoring request to remove zip which isn't installed
dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed
1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'javascript-common', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-14-dev:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'littler', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-biovizbase', 'r-bioc-bsgenome', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-ucsc.utils', 'r-bioc-variantannotation', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-acepack', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-chron', 'r-cran-cli', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-deldir', 'r-cran-dichromat', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-highr', 'r-cran-hmisc', 'r-cran-hms', 'r-cran-htmltable', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-httr2', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64']
1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', 'r-bioc-gviz']
1m59.8s DUMP:
dpkg: warning: ignoring request to remove r-bioc-gviz which isn't installed
1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', 'r-bioc-gviz']
1m59.8s INFO: Running scripts post_purge
1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_purge_exceptions']
1m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_purge_exceptions']
1m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_purge_manual_cleanup']
1m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_purge_manual_cleanup']
1m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', '--pending']
1m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--purge', '--pending']
1m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--remove', '--pending']
1m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg', '--remove', '--pending']
1m59.9s INFO: Running scripts post_test
1m59.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_test_exceptions']
1m59.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'tmp/scripts/post_test_exceptions']
1m59.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
2m0.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
2m0.9s DEBUG: No broken symlinks as far as we can find.
2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-divert', '--list']
2m0.9s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
2m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'dpkg-divert', '--list']
2m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'clean']
2m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxtllkphh', 'apt-get', 'clean']
2m0.9s DEBUG: Recording chroot state
2m3.1s INFO: PASS: Installation and purging test.
2m3.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/shm']
2m3.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/shm']
2m3.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/console']
2m3.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/console']
2m3.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/ptmx']
2m3.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/ptmx']
2m3.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/pts']
2m3.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/dev/pts']
2m3.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/proc']
2m3.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxtllkphh/proc']
2m3.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
2m3.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxtllkphh']
2m3.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxtllkphh
2m3.8s INFO: PASS: All tests.
2m3.8s INFO: piuparts run ends.
ret=0
End: 2025-04-09 18:49:36 GMT