Start: 2025-04-09 10:38:41 GMT
Package: r-bioc-hdf5array
Version: 1.34.0-2
Installed-Size: 9085
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Architecture: amd64
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-sparsearray (>= 1.5.42), r-bioc-delayedarray (>= 0.31.8), r-bioc-rhdf5 (>= 2.31.6), r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.51.2), r-bioc-s4vectors (>= 0.27.13), r-bioc-iranges, r-bioc-s4arrays (>= 1.1.1), r-bioc-rhdf5lib, libc6 (>= 2.14), libhdf5-310 (>= 1.14.4.3), libhdf5-hl-310 (>= 1.8.13)
Suggests: r-bioc-biocparallel, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.15.1), r-bioc-experimenthub, r-bioc-genomicfeatures, r-cran-runit, r-bioc-singlecellexperiment, r-bioc-delayedmatrixstats, r-bioc-genefilter
Description: HDF5 backend for DelayedArray objects
Homepage: https://bioconductor.org/packages/HDF5Array/
Description-md5: 75935fc5e97c3a902de41900a4e583c7
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-hdf5array/r-bioc-hdf5array_1.34.0-2_amd64.deb
Size: 8788364
MD5sum: 3a87b0e0ca7b594913b94f7de2dee7b6
SHA256: 46038880060740e03633a9dae6fc10e773b4550f619cc9ccf03627c41416380e
Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-hdf5array=1.34.0-2
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-hdf5array=1.34.0-2
0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6eb9bbca
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6eb9bbca
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/proc']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/proc']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/pts']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/pts']
0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/ptmx']
0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/ptmx']
0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/console']
0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/console']
0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/shm']
0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/shm']
0m0.5s DEBUG: sources.list:
deb http://deb.debian.org/debian/ sid main
0m0.5s DEBUG: Created policy-rc.d and chmodded it.
0m0.5s DEBUG: Created resolv.conf.
0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6eb9bbca/tmp/scripts/
0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp6eb9bbca/tmp/scripts/
0m0.5s INFO: Running scripts post_chroot_unpack
0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'update']
0m3.9s DUMP:
Get:1 http://deb.debian.org/debian sid InRelease [205 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB]
Get:3 http://deb.debian.org/debian sid/main Translation-en [7416 kB]
Fetched 17.8 MB in 2s (7352 kB/s)
Reading package lists...
0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'update']
0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-yf', 'dist-upgrade']
0m4.7s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-yf', 'dist-upgrade']
0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m5.2s DUMP:
18b305595815f83b09c2fe784f2b4851 -
0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m5.2s INFO: Running scripts post_setup
0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_dummy_users']
0m6.8s DUMP:
useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999
useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999
useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999
useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999
useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999
useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999
useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999
useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999
0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_dummy_users']
0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_fake-essential']
0m9.0s DUMP:
*** Adding fake essential packages ***
Reading package lists...
Building dependency tree...
init-system-helpers is already the newest version (1.68).
The following additional packages will be installed:
libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps
sensible-utils ucf
Suggested packages:
dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks
Recommended packages:
libgpm2 psmisc linux-sysctl-defaults
The following NEW packages will be installed:
dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl
libtext-wrapi18n-perl procps sensible-utils ucf
0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded.
Need to get 1757 kB of archives.
After this operation, 4947 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0051 [42.8 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB]
Preconfiguring packages ...
Fetched 1757 kB in 0s (27.9 MB/s)
Selecting previously unselected package libncursesw6:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 4926 files and directories currently installed.)
Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.5+20250216-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../6-ucf_3.0051_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0051) ...
Selecting previously unselected package dbconfig-common.
Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ...
Unpacking dbconfig-common (2.0.24) ...
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libproc2-0:amd64 (2:4.0.4-7) ...
Setting up libncursesw6:amd64 (6.5+20250216-2) ...
Setting up sensible-utils (0.0.24) ...
Setting up procps (2:4.0.4-7) ...
Setting up ucf (3.0051) ...
Setting up dbconfig-common (2.0.24) ...
Creating config file /etc/dbconfig-common/config with new version
Processing triggers for libc-bin (2.41-6) ...
0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_fake-essential']
0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_forbid_home']
0m9.0s DUMP:
Disabling /home
Adding 'local diversion of /home to /home.distrib'
0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_forbid_home']
0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_force-unsafe-io']
0m9.1s DUMP:
Enabling dpkg --force-unsafe-io.
Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
'/bin/sync' -> 'true'
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_force-unsafe-io']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_minimize']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_minimize']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_squeeze-backports']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_squeeze-backports']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_zz_backports']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_setup_zz_backports']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'clean']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'clean']
0m9.1s DEBUG: Recording chroot state
0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m9.5s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-1.1+b2
install ok installed bsdutils bsdutils 1:2.41-3
install ok installed coreutils coreutils 9.6-2
install ok installed dash dash 0.5.12-12
install ok installed dbconfig-common dbconfig-common 2.0.24
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblkid1:amd64 libblkid1 2.41-3
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-3
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4
install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libuuid1:amd64 libuuid1 2.41-3
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed login login 1:4.16.0-2+really2.41-3
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.41-3
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed procps procps 2:4.0.4-7
install ok installed sed sed 4.9-2
install ok installed sensible-utils sensible-utils 0.0.24
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed ucf ucf 3.0051
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-3
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-divert', '--list']
0m9.5s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-divert', '--list']
0m9.5s INFO: Running scripts is_testable
0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/is_testable_uninstallable']
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/is_testable_uninstallable']
0m9.6s INFO: apt-cache does not know about any of the requested packages
0m9.6s INFO: Running scripts pre_test
0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_test_exceptions']
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_test_exceptions']
0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_test_root_password']
0m9.6s DUMP:
New password: Retype new password: passwd: password updated successfully
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_test_root_password']
0m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m10.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m10.9s DEBUG: No broken symlinks as far as we can find.
0m10.9s INFO: Running scripts pre_install
0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_database-server']
0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_database-server']
0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_exceptions']
0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_exceptions']
0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_extras']
0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_extras']
0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture']
0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture']
0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-hdf5array=1.34.0-2']
0m12.2s DUMP:
Package: r-bioc-hdf5array
Version: 1.34.0-2
Installed-Size: 9085
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Architecture: amd64
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-sparsearray (>= 1.5.42), r-bioc-delayedarray (>= 0.31.8), r-bioc-rhdf5 (>= 2.31.6), r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.51.2), r-bioc-s4vectors (>= 0.27.13), r-bioc-iranges, r-bioc-s4arrays (>= 1.1.1), r-bioc-rhdf5lib, libc6 (>= 2.14), libhdf5-310 (>= 1.14.4.3), libhdf5-hl-310 (>= 1.8.13)
Suggests: r-bioc-biocparallel, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.15.1), r-bioc-experimenthub, r-bioc-genomicfeatures, r-cran-runit, r-bioc-singlecellexperiment, r-bioc-delayedmatrixstats, r-bioc-genefilter
Description-en: HDF5 backend for DelayedArray objects
Implements the HDF5Array and TENxMatrix classes, 2 convenient
and memory-efficient array-like containers for on-disk representation
of HDF5 datasets. HDF5Array is for datasets that use the conventional
(i.e. dense) HDF5 representation. TENxMatrix is for datasets that
use the HDF5-based sparse matrix representation from 10x Genomics
(e.g. the 1.3 Million Brain Cell Dataset). Both containers being
DelayedArray extensions, they support all operations supported by
DelayedArray objects. These operations can be either delayed or
block-processed.
Description-md5: 75935fc5e97c3a902de41900a4e583c7
Homepage: https://bioconductor.org/packages/HDF5Array/
Section: gnu-r
Priority: optional
Filename: pool/main/r/r-bioc-hdf5array/r-bioc-hdf5array_1.34.0-2_amd64.deb
Size: 8788364
MD5sum: 3a87b0e0ca7b594913b94f7de2dee7b6
SHA256: 46038880060740e03633a9dae6fc10e773b4550f619cc9ccf03627c41416380e
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-hdf5array=1.34.0-2']
0m12.2s DEBUG: metapackage:
Package: piuparts-depends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: piuparts developers team <piuparts-devel@alioth-lists.debian.net>
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-sparsearray (>= 1.5.42), r-bioc-delayedarray (>= 0.31.8), r-bioc-rhdf5 (>= 2.31.6), r-cran-matrix, r-bioc-rhdf5filters, r-bioc-biocgenerics (>= 0.51.2), r-bioc-s4vectors (>= 0.27.13), r-bioc-iranges, r-bioc-s4arrays (>= 1.1.1), r-bioc-rhdf5lib, libc6 (>= 2.14), libhdf5-310 (>= 1.14.4.3), libhdf5-hl-310 (>= 1.8.13)
Description: Dummy package to satisfy dependencies - created by piuparts
This package was created automatically by piuparts and can safely be removed
0m12.2s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8tibxuz6/piuparts-depends-dummy']
0m12.2s DUMP:
dpkg-deb: warning: not checking contents of control area
dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp8tibxuz6/piuparts-depends-dummy.deb'.
0m12.2s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8tibxuz6/piuparts-depends-dummy']
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt']
0m12.2s DUMP:
3.0.0
0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt']
0m12.2s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp8tibxuz6/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp6eb9bbca/tmp
0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb']
0m29.4s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1
libblas3 libblosc1 libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2
libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1
libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfreetype6
libfribidi0 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl
libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64
libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b
libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libice6 libicu76 libidn2-0
libidn2-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 libldap-dev libldap2
liblerc4 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev
libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3
libpng16-16t64 libpsl-dev libpsl5t64 libreadline8t64 librtmp-dev librtmp1
libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5
libssh2-1-dev libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev
libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64
libtk8.6 libunbound8 libunistring5 libwebp7 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
libxss1 libxt6t64 libzstd-dev linux-libc-dev nettle-dev openssl pkgconf
pkgconf-bin r-base-core r-bioc-biocgenerics r-bioc-delayedarray
r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters
r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-crayon r-cran-lattice
r-cran-matrix r-cran-matrixstats readline-common rpcsvc-proto unzip
x11-common xdg-utils zip zlib1g-dev
Suggested packages:
doc-base krb5-doc libc-devtools glibc-doc manpages-dev dpkg-dev libcurl4-doc
libidn-dev low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data
gnutls-bin gnutls-doc krb5-user libhdf5-doc libnghttp2-doc p11-kit-doc
libssl-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html r-bioc-biobase r-bioc-hdf5array r-bioc-genomicranges
r-bioc-pwalign r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-runit r-bioc-biocparallel
r-bioc-genefilter r-bioc-summarizedexperiment r-cran-lobstr
r-bioc-delayedmatrixstats r-cran-knitr r-cran-rmarkdown r-bioc-biocstyle
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-sparsematrixstats
r-cran-testthat r-cran-bit64 r-cran-bench r-cran-dplyr r-cran-ggplot2
r-cran-mockery r-cran-tinytest r-bioc-shortread r-bioc-graph
r-cran-data.table r-bioc-experimenthub r-bioc-biostrings readline-doc
Recommended packages:
manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs
krb5-locales libldap-common publicsuffix libsasl2-modules libtasn1-doc
r-recommended r-base-dev r-doc-html r-cran-mockery r-cran-rstudioapi
r-cran-testthat r-cran-withr r-cran-base64enc r-cran-ggplot2 r-cran-knitr
r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1
libblas3 libblosc1 libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2
libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1
libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfreetype6
libfribidi0 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl
libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64
libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b
libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libice6 libicu76 libidn2-0
libidn2-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 libldap-dev libldap2
liblerc4 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev
libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3
libpng16-16t64 libpsl-dev libpsl5t64 libreadline8t64 librtmp-dev librtmp1
libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5
libssh2-1-dev libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev
libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64
libtk8.6 libunbound8 libunistring5 libwebp7 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
libxss1 libxt6t64 libzstd-dev linux-libc-dev nettle-dev openssl
piuparts-depends-dummy pkgconf pkgconf-bin r-base-core r-bioc-biocgenerics
r-bioc-delayedarray r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5
r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors
r-bioc-sparsearray r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-crayon
r-cran-lattice r-cran-matrix r-cran-matrixstats readline-common rpcsvc-proto
unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 154 newly installed, 0 to remove and 0 not upgraded.
Need to get 101 MB/101 MB of archives.
After this operation, 270 MB of additional disk space will be used.
Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [786 B]
Get:2 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:3 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.0-1 [1491 kB]
Get:4 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB]
Get:5 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-6 [57.0 kB]
Get:6 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.21-1 [2542 kB]
Get:7 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB]
Get:8 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB]
Get:9 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-6 [1988 kB]
Get:10 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get:11 http://deb.debian.org/debian sid/main amd64 comerr-dev amd64 2.1-1.47.2-1+b1 [56.0 kB]
Get:12 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB]
Get:13 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:14 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB]
Get:15 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get:16 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:17 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:18 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB]
Get:19 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB]
Get:20 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB]
Get:21 http://deb.debian.org/debian sid/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB]
Get:22 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get:23 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get:24 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-5 [9316 B]
Get:25 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get:26 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get:27 http://deb.debian.org/debian sid/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB]
Get:28 http://deb.debian.org/debian sid/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB]
Get:29 http://deb.debian.org/debian sid/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB]
Get:30 http://deb.debian.org/debian sid/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB]
Get:31 http://deb.debian.org/debian sid/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB]
Get:32 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB]
Get:33 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B]
Get:34 http://deb.debian.org/debian sid/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB]
Get:35 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B]
Get:36 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get:37 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-1 [29.3 kB]
Get:38 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB]
Get:39 http://deb.debian.org/debian sid/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB]
Get:40 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get:41 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get:42 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get:43 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get:44 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get:45 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
Get:46 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get:47 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get:48 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get:49 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB]
Get:50 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB]
Get:51 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:52 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get:53 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:54 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:55 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get:56 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get:57 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:58 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:59 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get:60 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:61 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:62 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:63 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:64 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:65 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB]
Get:66 http://deb.debian.org/debian sid/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB]
Get:67 http://deb.debian.org/debian sid/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB]
Get:68 http://deb.debian.org/debian sid/main amd64 libldap-dev amd64 2.6.9+dfsg-2 [311 kB]
Get:69 http://deb.debian.org/debian sid/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get:70 http://deb.debian.org/debian sid/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get:71 http://deb.debian.org/debian sid/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get:72 http://deb.debian.org/debian sid/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB]
Get:73 http://deb.debian.org/debian sid/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB]
Get:74 http://deb.debian.org/debian sid/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB]
Get:75 http://deb.debian.org/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB]
Get:76 http://deb.debian.org/debian sid/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB]
Get:77 http://deb.debian.org/debian sid/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB]
Get:78 http://deb.debian.org/debian sid/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB]
Get:79 http://deb.debian.org/debian sid/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB]
Get:80 http://deb.debian.org/debian sid/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB]
Get:81 http://deb.debian.org/debian sid/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB]
Get:82 http://deb.debian.org/debian sid/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB]
Get:83 http://deb.debian.org/debian sid/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB]
Get:84 http://deb.debian.org/debian sid/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB]
Get:85 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get:86 http://deb.debian.org/debian sid/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB]
Get:87 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.5.0-1 [2949 kB]
Get:88 http://deb.debian.org/debian sid/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB]
Get:89 http://deb.debian.org/debian sid/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB]
Get:90 http://deb.debian.org/debian sid/main amd64 libcurl4-openssl-dev amd64 8.13.0-1 [498 kB]
Get:91 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get:92 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get:93 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get:94 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB]
Get:95 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB]
Get:96 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB]
Get:97 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get:98 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB]
Get:99 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB]
Get:100 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB]
Get:101 http://deb.debian.org/debian sid/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB]
Get:102 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB]
Get:103 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB]
Get:104 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB]
Get:105 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get:106 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB]
Get:107 http://deb.debian.org/debian sid/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB]
Get:108 http://deb.debian.org/debian sid/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB]
Get:109 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB]
Get:110 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get:111 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-3 [9721 kB]
Get:112 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get:113 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get:114 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get:115 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:116 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get:117 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB]
Get:118 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB]
Get:119 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB]
Get:120 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB]
Get:121 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB]
Get:122 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:123 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get:124 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB]
Get:125 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get:126 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get:127 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB]
Get:128 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB]
Get:129 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB]
Get:130 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get:131 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get:132 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get:133 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB]
Get:134 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-14 [233 kB]
Get:135 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB]
Get:136 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get:137 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.3-1+b1 [28.3 MB]
Get:138 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB]
Get:139 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB]
Get:140 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB]
Get:141 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB]
Get:142 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.18.1-1 [449 kB]
Get:143 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB]
Get:144 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.40.1-2 [2309 kB]
Get:145 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB]
Get:146 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-1 [165 kB]
Get:147 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [702 kB]
Get:148 http://deb.debian.org/debian sid/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B]
Get:149 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
Get:150 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1372 kB]
Get:151 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2076 kB]
Get:152 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2 [104 kB]
Get:153 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5filters amd64 1.18.1+dfsg-1 [139 kB]
Get:154 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1 [865 kB]
Preconfiguring packages ...
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Unpacking readline-common (8.2-6) ...
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Unpacking linux-libc-dev (6.12.21-1) ...
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Unpacking libcrypt-dev:amd64 (1:4.4.38-1) ...
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Unpacking rpcsvc-proto (1.4.3-1) ...
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Unpacking libc6-dev:amd64 (2.41-6) ...
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Unpacking libcom-err2:amd64 (1.47.2-1+b1) ...
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Unpacking comerr-dev:amd64 (2.1-1.47.2-1+b1) ...
Selecting previously unselected package libexpat1:amd64.
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Unpacking libexpat1:amd64 (2.7.1-1) ...
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Unpacking libbrotli1:amd64 (1.1.0-2+b7) ...
Selecting previously unselected package libpng16-16t64:amd64.
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Unpacking libpng16-16t64:amd64 (1.6.47-1.1) ...
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Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ...
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Unpacking fonts-dejavu-mono (2.37-8) ...
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Selecting previously unselected package libkeyutils1:amd64.
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Unpacking libkeyutils1:amd64 (1.6.3-5) ...
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Unpacking libaec0:amd64 (1.1.3-1+b1) ...
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Setting up zip (3.0-14) ...
Setting up libblas3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
Setting up libunbound8:amd64 (1.22.0-1+b1) ...
Setting up libpkgconf3:amd64 (1.8.1-4) ...
Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ...
Setting up rpcsvc-proto (1.4.3-1) ...
Setting up libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Setting up libx11-data (2:1.8.12-1) ...
Setting up libfribidi0:amd64 (1.0.16-1) ...
Setting up libunistring5:amd64 (1.3-2) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libssl-dev:amd64 (3.5.0-1) ...
Setting up libpng16-16t64:amd64 (1.6.47-1.1) ...
Setting up libatomic1:amd64 (14.2.0-19) ...
Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libk5crypto3:amd64 (1.21.3-5) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Setting up libgfortran5:amd64 (14.2.0-19) ...
Setting up libnghttp3-9:amd64 (1.8.0-1) ...
Setting up libwebp7:amd64 (1.5.0-0.1) ...
Setting up libnghttp3-dev:amd64 (1.8.0-1) ...
Setting up libffi8:amd64 (3.4.7-1) ...
Setting up libcrypt-dev:amd64 (1:4.4.38-1) ...
Setting up libtiff6:amd64 (4.7.0-3) ...
Setting up libblosc1:amd64 (1.21.5+ds-1+b2) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up libx11-6:amd64 (2:1.8.12-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libkrb5-3:amd64 (1.21.3-5) ...
Setting up libicu76:amd64 (76.1-3) ...
Setting up libpaper2:amd64 (2.2.5-0.3+b2) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libc-dev-bin (2.41-6) ...
Setting up libtasn1-6-dev:amd64 (4.20.0-2) ...
Setting up openssl (3.5.0-1) ...
Setting up readline-common (8.2-6) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libldap2:amd64 (2.6.9+dfsg-2) ...
Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ...
Setting up libsz2:amd64 (1.1.3-1+b1) ...
Setting up libice6:amd64 (2:1.1.1-1) ...
Setting up liblapack3:amd64 (3.12.1-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
Setting up nettle-dev:amd64 (3.10.1-1) ...
Setting up libxrender1:amd64 (1:0.9.12-1) ...
Setting up fontconfig-config (2.15.0-2.3) ...
Setting up libaec-dev:amd64 (1.1.3-1+b1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b3) ...
Setting up libidn2-0:amd64 (2.3.8-2) ...
Setting up libpaper-utils (2.2.5-0.3+b2) ...
Setting up pkgconf:amd64 (1.8.1-4) ...
Setting up libthai0:amd64 (0.1.29-2+b1) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libglib2.0-0t64:amd64 (2.84.1-1) ...
No schema files found: doing nothing.
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up libldap-dev:amd64 (2.6.9+dfsg-2) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
Setting up libidn2-dev:amd64 (2.3.8-2) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up libc6-dev:amd64 (2.41-6) ...
Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Setting up libxss1:amd64 (1:1.2.3-1+b3) ...
Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
Setting up libsm6:amd64 (2:1.2.6-1) ...
Setting up libp11-kit-dev:amd64 (0.25.5-3) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ...
Setting up libnghttp2-dev:amd64 (1.64.0-1) ...
Setting up fontconfig (2.15.0-2.3) ...
Regenerating fonts cache... done.
Setting up libxft2:amd64 (2.3.6-1+b4) ...
Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ...
Setting up libtk8.6:amd64 (8.6.16-1) ...
Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libcairo2:amd64 (1.18.4-1+b1) ...
Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ...
Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ...
Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libgssrpc4t64:amd64 (1.21.3-5) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Setting up comerr-dev:amd64 (2.1-1.47.2-1+b1) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ...
Setting up libgnutls28-dev:amd64 (3.8.9-2) ...
Setting up libcurl4t64:amd64 (8.13.0-1) ...
Setting up libkdb5-10t64:amd64 (1.21.3-5) ...
Setting up libjpeg-dev:amd64 (1:2.1.5-3.1) ...
Setting up r-base-core (4.4.3-1+b1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.3-1) ...
Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up r-cran-lattice (0.22-7-1) ...
Setting up libssh2-1-dev:amd64 (1.11.1-1) ...
Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ...
Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-3) ...
Setting up krb5-multidev:amd64 (1.21.3-5) ...
Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ...
Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
Setting up r-bioc-biocgenerics (0.52.0-2) ...
Setting up r-cran-matrixstats (1.5.0-1) ...
Setting up r-bioc-matrixgenerics (1.18.1-1) ...
Setting up r-cran-abind (1.4-8-1) ...
Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Setting up libkrb5-dev:amd64 (1.21.3-5) ...
Setting up libcurl4-openssl-dev:amd64 (8.13.0-1) ...
Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
Setting up r-cran-matrix (1.7-3-1) ...
Setting up r-bioc-iranges (2.40.1-2) ...
Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ...
Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ...
Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
Setting up libhdf5-dev (1.14.5+repack-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up r-bioc-xvector (0.46.0-2) ...
Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
Setting up r-bioc-rhdf5lib (1.28.0+dfsg-2) ...
Setting up r-bioc-rhdf5filters (1.18.1+dfsg-1) ...
Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
Setting up r-bioc-rhdf5 (2.50.2+dfsg-1) ...
Setting up piuparts-depends-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.41-6) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
0m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb']
0m29.4s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok
0m29.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp6eb9bbca/./tmp/piuparts-depends-dummy.deb
0m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy']
0m29.5s DUMP:
piuparts-depends-dummy install ok installed
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m29.5s DUMP:
(Reading database ... 14838 files and directories currently installed.)
Removing piuparts-depends-dummy (0.invalid.0) ...
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'clean']
0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'clean']
0m29.5s DEBUG: Recording chroot state
0m30.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m31.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m33.4s DEBUG: No broken symlinks as far as we can find.
0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy']
0m34.8s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy']
0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy', 'r-bioc-hdf5array']
0m34.9s DUMP:
r-bioc-hdf5array:
Installed: (none)
Candidate: 1.34.0-2
Version table:
1.34.0-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy', 'r-bioc-hdf5array']
0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', 'install', 'r-bioc-hdf5array=1.34.0-2']
0m36.5s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Suggested packages:
r-bioc-biocparallel r-bioc-genomicranges r-bioc-summarizedexperiment
r-bioc-experimenthub r-bioc-genomicfeatures r-cran-runit
r-bioc-singlecellexperiment r-bioc-delayedmatrixstats r-bioc-genefilter
The following NEW packages will be installed:
r-bioc-hdf5array
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 8788 kB of archives.
After this operation, 9303 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-hdf5array amd64 1.34.0-2 [8788 kB]
Fetched 8788 kB in 0s (101 MB/s)
Selecting previously unselected package r-bioc-hdf5array.
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(Reading database ... 14838 files and directories currently installed.)
Preparing to unpack .../r-bioc-hdf5array_1.34.0-2_amd64.deb ...
Unpacking r-bioc-hdf5array (1.34.0-2) ...
Setting up r-bioc-hdf5array (1.34.0-2) ...
0m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', 'install', 'r-bioc-hdf5array=1.34.0-2']
0m36.5s INFO: Running scripts post_install
0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_install_exceptions']
0m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_install_exceptions']
0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'systemd-tmpfiles', '--cat-config']
0m36.5s DUMP:
chroot: failed to run command 'systemd-tmpfiles': No such file or directory
0m36.5s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'systemd-tmpfiles', '--cat-config']
0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'remove', 'r-bioc-hdf5array']
0m37.9s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1 libblas3 libblosc1
libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2
libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0
libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1
libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310
libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libice6 libicu76 libidn2-dev
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3
libkrb5-dev libkrb5support0 liblapack3 libldap-dev libldap2 liblerc4
libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libp11-kit-dev
libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libpsl-dev
libpsl5t64 libreadline8t64 librtmp-dev librtmp1 libsasl2-2
libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev
libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6
libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6
libunbound8 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev
linux-libc-dev nettle-dev pkgconf pkgconf-bin r-base-core
r-bioc-biocgenerics r-bioc-delayedarray r-bioc-iranges r-bioc-matrixgenerics
r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays
r-bioc-s4vectors r-bioc-sparsearray r-bioc-xvector r-bioc-zlibbioc
r-cran-abind r-cran-crayon r-cran-lattice r-cran-matrix r-cran-matrixstats
readline-common rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
r-bioc-hdf5array
0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
After this operation, 9303 kB disk space will be freed.
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(Reading database ... 14878 files and directories currently installed.)
Removing r-bioc-hdf5array (1.34.0-2) ...
0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'remove', 'r-bioc-hdf5array']
0m37.9s INFO: Reinstalling after remove
0m37.9s INFO: Running scripts pre_install
0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_database-server']
0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_database-server']
0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_exceptions']
0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_exceptions']
0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_extras']
0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_extras']
0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture']
0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture']
0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m37.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy']
0m38.0s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy']
0m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy', 'r-bioc-hdf5array']
0m38.0s DUMP:
r-bioc-hdf5array:
Installed: (none)
Candidate: 1.34.0-2
Version table:
1.34.0-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
0m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy', 'r-bioc-hdf5array']
0m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', 'install', 'r-bioc-hdf5array=1.34.0-2']
0m39.3s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Suggested packages:
r-bioc-biocparallel r-bioc-genomicranges r-bioc-summarizedexperiment
r-bioc-experimenthub r-bioc-genomicfeatures r-cran-runit
r-bioc-singlecellexperiment r-bioc-delayedmatrixstats r-bioc-genefilter
The following NEW packages will be installed:
r-bioc-hdf5array
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/8788 kB of archives.
After this operation, 9303 kB of additional disk space will be used.
Selecting previously unselected package r-bioc-hdf5array.
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(Reading database ... 14838 files and directories currently installed.)
Preparing to unpack .../r-bioc-hdf5array_1.34.0-2_amd64.deb ...
Unpacking r-bioc-hdf5array (1.34.0-2) ...
Setting up r-bioc-hdf5array (1.34.0-2) ...
0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', 'install', 'r-bioc-hdf5array=1.34.0-2']
0m39.3s INFO: Running scripts post_install
0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_install_exceptions']
0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_install_exceptions']
0m39.3s INFO: Running scripts pre_install
0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_database-server']
0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_database-server']
0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_exceptions']
0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_exceptions']
0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_extras']
0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_extras']
0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture']
0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture']
0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy']
0m39.5s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian sid/main amd64 Packages
release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy']
0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy', 'r-bioc-hdf5array']
0m39.5s DUMP:
r-bioc-hdf5array:
Installed: 1.34.0-2
Candidate: 1.34.0-2
Version table:
*** 1.34.0-2 500
500 http://deb.debian.org/debian sid/main amd64 Packages
100 /var/lib/dpkg/status
0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-cache', 'policy', 'r-bioc-hdf5array']
0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-hdf5array=1.34.0-2']
0m40.5s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded.
Need to get 0 B/8788 kB of archives.
After this operation, 0 B of additional disk space will be used.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14878 files and directories currently installed.)
Preparing to unpack .../r-bioc-hdf5array_1.34.0-2_amd64.deb ...
Unpacking r-bioc-hdf5array (1.34.0-2) over (1.34.0-2) ...
Setting up r-bioc-hdf5array (1.34.0-2) ...
0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-hdf5array=1.34.0-2']
0m40.5s INFO: Running scripts post_install
0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_install_exceptions']
0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_install_exceptions']
0m40.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m41.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m42.8s DEBUG: No broken symlinks as far as we can find.
0m43.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', '-ac', '--ignore-obsolete']
0m45.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', '-ac', '--ignore-obsolete']
0m45.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m45.0s DUMP:
0.15.6
0m45.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m45.0s INFO: Running adequate version 0.15.6 now.
0m45.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'r-bioc-hdf5array']
0m45.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'r-bioc-hdf5array']
0m45.1s INFO: Running scripts pre_remove
0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m48.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m48.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_exceptions']
0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_exceptions']
0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_preseed_cleanup']
0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/pre_remove_preseed_cleanup']
0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m48.9s DUMP:
install ok installed apt apt 3.0.0
install ok installed base-files base-files 13.7
install ok installed base-passwd base-passwd 3.6.7
install ok installed bash bash 5.2.37-1.1+b2
install ok installed bsdutils bsdutils 1:2.41-3
install ok installed ca-certificates ca-certificates 20241223
install ok installed comerr-dev:amd64 comerr-dev 2.1-1.47.2-1+b1
install ok installed coreutils coreutils 9.6-2
install ok installed dash dash 0.5.12-12
install ok installed dbconfig-common dbconfig-common 2.0.24
install ok installed debconf debconf 1.5.91
install ok installed debian-archive-keyring debian-archive-keyring 2023.4
install ok installed debianutils debianutils 5.21
install ok installed diffutils diffutils 1:3.10-3
install ok installed dpkg dpkg 1.22.18
install ok installed findutils findutils 4.10.0-3
install ok installed fontconfig fontconfig 2.15.0-2.3
install ok installed fontconfig-config fontconfig-config 2.15.0-2.3
install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8
install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8
install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19
install ok installed grep grep 3.11-4
install ok installed gzip gzip 1.13-1
install ok installed hdf5-helpers hdf5-helpers 1.14.5+repack-3
install ok installed hostname hostname 3.25
install ok installed init-system-helpers init-system-helpers 1.68
install ok installed krb5-multidev:amd64 krb5-multidev 1.21.3-5
install ok installed libacl1:amd64 libacl1 2.3.2-2+b1
install ok installed libaec-dev:amd64 libaec-dev 1.1.3-1+b1
install ok installed libaec0:amd64 libaec0 1.1.3-1+b1
install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0
install ok installed libatomic1:amd64 libatomic1 14.2.0-19
install ok installed libattr1:amd64 libattr1 1:2.5.2-3
install ok installed libaudit-common libaudit-common 1:4.0.2-2
install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2
install ok installed libblas3:amd64 libblas3 3.12.1-2
install ok installed libblkid1:amd64 libblkid1 2.41-3
install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-1+b2
install ok installed libbrotli-dev:amd64 libbrotli-dev 1.1.0-2+b7
install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7
install ok installed libbsd0:amd64 libbsd0 0.12.2-2
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6
install ok installed libc-bin libc-bin 2.41-6
install ok installed libc-dev-bin libc-dev-bin 2.41-6
install ok installed libc6:amd64 libc6 2.41-6
install ok installed libc6-dev:amd64 libc6-dev 2.41-6
install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1
install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1
install ok installed libcap2:amd64 libcap2 1:2.75-4
install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1
install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1
install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1
install ok installed libcurl4-openssl-dev:amd64 libcurl4-openssl-dev 8.13.0-1
install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0-1
install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3+b1
install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278
install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1
install ok installed libevent-2.1-7t64:amd64 libevent-2.1-7t64 2.1.12-stable-10+b1
install ok installed libexpat1:amd64 libexpat1 2.7.1-1
install ok installed libffi8:amd64 libffi8 3.4.7-1
install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3
install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1
install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1
install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19
install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19
install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.1-1
install ok installed libgmp-dev:amd64 libgmp-dev 2:6.3.0+dfsg-3
install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3
install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.3.0+dfsg-3
install ok installed libgnutls-dane0t64:amd64 libgnutls-dane0t64 3.8.9-2
install ok installed libgnutls-openssl27t64:amd64 libgnutls-openssl27t64 3.8.9-2
install ok installed libgnutls28-dev:amd64 libgnutls28-dev 3.8.9-2
install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2
install ok installed libgomp1:amd64 libgomp1 14.2.0-19
install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1
install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5
install ok installed libgssrpc4t64:amd64 libgssrpc4t64 1.21.3-5
install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1
install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3
install ok installed libhdf5-cpp-310:amd64 libhdf5-cpp-310 1.14.5+repack-3
install ok installed libhdf5-dev libhdf5-dev 1.14.5+repack-3
install ok installed libhdf5-fortran-310:amd64 libhdf5-fortran-310 1.14.5+repack-3
install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3
install ok installed libhdf5-hl-cpp-310:amd64 libhdf5-hl-cpp-310 1.14.5+repack-3
install ok installed libhdf5-hl-fortran-310:amd64 libhdf5-hl-fortran-310 1.14.5+repack-3
install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1
install ok installed libice6:amd64 libice6 2:1.1.1-1
install ok installed libicu76:amd64 libicu76 76.1-3
install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2
install ok installed libidn2-dev:amd64 libidn2-dev 2.3.8-2
install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2
install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.1.5-3.1
install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1
install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.1.5-3.1
install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5
install ok installed libkadm5clnt-mit12:amd64 libkadm5clnt-mit12 1.21.3-5
install ok installed libkadm5srv-mit12:amd64 libkadm5srv-mit12 1.21.3-5
install ok installed libkdb5-10t64:amd64 libkdb5-10t64 1.21.3-5
install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-5
install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5
install ok installed libkrb5-dev:amd64 libkrb5-dev 1.21.3-5
install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5
install ok installed liblapack3:amd64 liblapack3 3.12.1-2
install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3
install ok installed libldap-dev:amd64 libldap-dev 2.6.9+dfsg-2
install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2
install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5
install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4
install ok installed liblzma5:amd64 liblzma5 5.8.1-1
install ok installed libmd0:amd64 libmd0 1.1.0-2+b1
install ok installed libmount1:amd64 libmount1 2.41-3
install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2
install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1
install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1
install ok installed libnghttp2-dev:amd64 libnghttp2-dev 1.64.0-1
install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1
install ok installed libnghttp3-dev:amd64 libnghttp3-dev 1.8.0-1
install ok installed libp11-kit-dev:amd64 libp11-kit-dev 0.25.5-3
install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3
install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3
install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3
install ok installed libpam-runtime libpam-runtime 1.7.0-3
install ok installed libpam0g:amd64 libpam0g 1.7.0-3
install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.56.3-1
install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.56.3-1
install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.56.3-1
install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b2
install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b2
install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1
install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3
install ok installed libpkgconf3:amd64 libpkgconf3 1.8.1-4
install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1.1
install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7
install ok installed libpsl-dev:amd64 libpsl-dev 0.21.2-1.1+b1
install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1
install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6
install ok installed librtmp-dev:amd64 librtmp-dev 2.4+20151223.gitfa8646d.1-2+b5
install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5
install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9
install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9
install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2
install ok installed libselinux1:amd64 libselinux1 3.8.1-1
install ok installed libsemanage-common libsemanage-common 3.8.1-1
install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1
install ok installed libsepol2:amd64 libsepol2 3.8.1-1
install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1
install ok installed libsm6:amd64 libsm6 2:1.2.6-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3
install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-1
install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2
install ok installed libssh2-1-dev:amd64 libssh2-1-dev 1.11.1-1
install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1
install ok installed libssl-dev:amd64 libssl-dev 3.5.0-1
install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1
install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19
install ok installed libsystemd0:amd64 libsystemd0 257.5-2
install ok installed libsz2:amd64 libsz2 1.1.3-1+b1
install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2
install ok installed libtasn1-6-dev:amd64 libtasn1-6-dev 4.20.0-2
install ok installed libtcl8.6:amd64 libtcl8.6 8.6.16+dfsg-1
install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4
install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10
install ok installed libthai-data libthai-data 0.1.29-2
install ok installed libthai0:amd64 libthai0 0.1.29-2+b1
install ok installed libtiff6:amd64 libtiff6 4.7.0-3
install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2
install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1
install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1
install ok installed libtk8.6:amd64 libtk8.6 8.6.16-1
install ok installed libudev1:amd64 libudev1 257.5-2
install ok installed libunbound8:amd64 libunbound8 1.22.0-1+b1
install ok installed libunistring5:amd64 libunistring5 1.3-2
install ok installed libuuid1:amd64 libuuid1 2.41-3
install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1
install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1
install ok installed libx11-data libx11-data 2:1.8.12-1
install ok installed libxau6:amd64 libxau6 1:1.0.11-1
install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1
install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1
install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1
install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1
install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3
install ok installed libxft2:amd64 libxft2 2.3.6-1+b4
install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1
install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b3
install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2+b2
install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2
install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-1
install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1
install ok installed linux-libc-dev linux-libc-dev 6.12.21-1
install ok installed login login 1:4.16.0-2+really2.41-3
install ok installed login.defs login.defs 1:4.17.4-1
install ok installed mawk mawk 1.3.4.20250131-1
install ok installed mount mount 2.41-3
install ok installed ncurses-base ncurses-base 6.5+20250216-2
install ok installed ncurses-bin ncurses-bin 6.5+20250216-2
install ok installed nettle-dev:amd64 nettle-dev 3.10.1-1
install ok installed openssl openssl 3.5.0-1
install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1
install ok installed passwd passwd 1:4.17.4-1
install ok installed perl-base perl-base 5.40.1-2
install ok installed pkgconf:amd64 pkgconf 1.8.1-4
install ok installed pkgconf-bin pkgconf-bin 1.8.1-4
install ok installed procps procps 2:4.0.4-7
install ok installed r-base-core r-base-core 4.4.3-1+b1
install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-2
install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.32.0+dfsg-2
install ok installed r-bioc-hdf5array r-bioc-hdf5array 1.34.0-2
install ok installed r-bioc-iranges r-bioc-iranges 2.40.1-2
install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.18.1-1
install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.50.2+dfsg-1
install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.18.1+dfsg-1
install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 1.28.0+dfsg-2
install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.6.0+dfsg-2
install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-2
install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.6.2+dfsg-2
install ok installed r-bioc-xvector r-bioc-xvector 0.46.0-2
install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.52.0+dfsg-2
install ok installed r-cran-abind r-cran-abind 1.4-8-1
install ok installed r-cran-crayon r-cran-crayon 1.5.3-1
install ok installed r-cran-lattice r-cran-lattice 0.22-7-1
install ok installed r-cran-matrix r-cran-matrix 1.7-3-1
install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-1
install ok installed readline-common readline-common 8.2-6
install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1
install ok installed sed sed 4.9-2
install ok installed sensible-utils sensible-utils 0.0.24
install ok installed sqv sqv 1.3.0-1
install ok installed sysvinit-utils sysvinit-utils 3.14-4
install ok installed tar tar 1.35+dfsg-3.1
install ok installed tzdata tzdata 2025b-1
install ok installed ucf ucf 3.0051
install ok installed unzip unzip 6.0-29
install ok installed usr-is-merged usr-is-merged 39+nmu2
install ok installed util-linux util-linux 2.41-3
install ok installed x11-common x11-common 1:7.7+24
install ok installed xdg-utils xdg-utils 1.2.1-2
install ok installed zip zip 3.0-14
install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1
install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1
0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-crayon', 'r-cran-lattice', 'r-cran-matrix', 'r-cran-matrixstats', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-hdf5array']
0m51.0s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core
fonts-dejavu-mono hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1
libblas3 libblosc1 libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2
libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1
libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfreetype6
libfribidi0 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl
libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64
libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b
libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libice6 libicu76 libidn2-0
libidn2-dev libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 libldap-dev libldap2
liblerc4 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev
libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3
libpng16-16t64 libpsl-dev libpsl5t64 libreadline8t64 librtmp-dev librtmp1
libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5
libssh2-1-dev libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev
libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64
libtk8.6 libunbound8 libunistring5 libwebp7 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
libxss1 libxt6t64 libzstd-dev linux-libc-dev nettle-dev openssl pkgconf
pkgconf-bin r-base-core r-bioc-biocgenerics r-bioc-delayedarray
r-bioc-hdf5array r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5
r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors
r-bioc-sparsearray r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-crayon
r-cran-lattice r-cran-matrix r-cran-matrixstats readline-common rpcsvc-proto
unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 0 newly installed, 154 to remove and 0 not upgraded.
After this operation, 279 MB disk space will be freed.
(Reading database ...
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14878 files and directories currently installed.)
Removing r-bioc-hdf5array (1.34.0-2) ...
Removing r-bioc-delayedarray (0.32.0+dfsg-2) ...
Removing r-bioc-sparsearray (1.6.2+dfsg-2) ...
Removing r-bioc-s4arrays (1.6.0+dfsg-2) ...
Removing r-cran-matrix (1.7-3-1) ...
Removing r-cran-abind (1.4-8-1) ...
Removing r-bioc-matrixgenerics (1.18.1-1) ...
Removing r-cran-matrixstats (1.5.0-1) ...
Removing r-bioc-rhdf5 (2.50.2+dfsg-1) ...
Removing r-bioc-rhdf5filters (1.18.1+dfsg-1) ...
Removing r-bioc-rhdf5lib (1.28.0+dfsg-2) ...
Removing libhdf5-dev (1.14.5+repack-3) ...
Removing libcurl4-openssl-dev:amd64 (8.13.0-1) ...
Removing libkrb5-dev:amd64 (1.21.3-5) ...
Removing krb5-multidev:amd64 (1.21.3-5) ...
Removing comerr-dev:amd64 (2.1-1.47.2-1+b1) ...
Removing hdf5-helpers (1.14.5+repack-3) ...
Removing libaec-dev:amd64 (1.1.3-1+b1) ...
Removing libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ...
Removing libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ...
Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
Removing libhdf5-fortran-310:amd64 (1.14.5+repack-3) ...
Removing libblosc1:amd64 (1.21.5+ds-1+b2) ...
Removing libbrotli-dev:amd64 (1.1.0-2+b7) ...
Removing librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Removing r-bioc-xvector (0.46.0-2) ...
Removing r-bioc-zlibbioc (1.52.0+dfsg-2) ...
Removing libjpeg-dev:amd64 (1:2.1.5-3.1) ...
Removing libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ...
Removing libgnutls28-dev:amd64 (3.8.9-2) ...
Removing libkadm5srv-mit12:amd64 (1.21.3-5) ...
Removing libkdb5-10t64:amd64 (1.21.3-5) ...
Removing libkadm5clnt-mit12:amd64 (1.21.3-5) ...
Removing libgnutls-dane0t64:amd64 (3.8.9-2) ...
Removing libunbound8:amd64 (1.22.0-1+b1) ...
Removing libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Removing libp11-kit-dev:amd64 (0.25.5-3) ...
Removing nettle-dev:amd64 (3.10.1-1) ...
Removing libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
Removing libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ...
Removing libgnutls-openssl27t64:amd64 (3.8.9-2) ...
Removing libgssrpc4t64:amd64 (1.21.3-5) ...
Removing libhdf5-cpp-310:amd64 (1.14.5+repack-3) ...
Removing libidn2-dev:amd64 (2.3.8-2) ...
Removing libpsl-dev:amd64 (0.21.2-1.1+b1) ...
Removing libldap-dev:amd64 (2.6.9+dfsg-2) ...
Removing libnghttp2-dev:amd64 (1.64.0-1) ...
Removing libnghttp3-dev:amd64 (1.8.0-1) ...
Removing pkgconf:amd64 (1.8.1-4) ...
Removing pkgconf-bin (1.8.1-4) ...
Removing libpkgconf3:amd64 (1.8.1-4) ...
Removing libsnappy1v5:amd64 (1.2.2-1) ...
Removing libssh2-1-dev:amd64 (1.11.1-1) ...
Removing libssl-dev:amd64 (3.5.0-1) ...
Removing libtasn1-6-dev:amd64 (4.20.0-2) ...
Removing libzstd-dev:amd64 (1.5.7+dfsg-1) ...
Removing r-bioc-iranges (2.40.1-2) ...
Removing r-bioc-s4vectors (0.44.0+dfsg-2) ...
Removing r-bioc-biocgenerics (0.52.0-2) ...
Removing r-cran-crayon (1.5.3-1) ...
Removing r-cran-lattice (0.22-7-1) ...
Removing r-base-core (4.4.3-1+b1) ...
Removing ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Removing libpangocairo-1.0-0:amd64 (1.56.3-1) ...
Removing libpangoft2-1.0-0:amd64 (1.56.3-1) ...
Removing libpango-1.0-0:amd64 (1.56.3-1) ...
Removing fontconfig (2.15.0-2.3) ...
Removing libtk8.6:amd64 (8.6.16-1) ...
Removing libxft2:amd64 (2.3.6-1+b4) ...
Removing libcairo2:amd64 (1.18.4-1+b1) ...
Removing libfontconfig1:amd64 (2.15.0-2.3) ...
Removing fontconfig-config (2.15.0-2.3) ...
Removing fonts-dejavu-core (2.37-8) ...
Removing fonts-dejavu-mono (2.37-8) ...
Removing libhdf5-310:amd64 (1.14.5+repack-3) ...
Removing libsz2:amd64 (1.1.3-1+b1) ...
Removing libaec0:amd64 (1.1.3-1+b1) ...
Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ...
Removing libglib2.0-0t64:amd64 (2.84.1-1) ...
Removing libatomic1:amd64 (14.2.0-19) ...
Removing liblapack3:amd64 (3.12.1-2) ...
Removing libblas3:amd64 (3.12.1-2) ...
Removing libfreetype6:amd64 (2.13.3+dfsg-1) ...
Removing libcurl4t64:amd64 (8.13.0-1) ...
Removing libbrotli1:amd64 (1.1.0-2+b7) ...
Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Removing libc6-dev:amd64 (2.41-6) ...
Removing libc-dev-bin (2.41-6) ...
Removing libtirpc3t64:amd64 (1.3.6+ds-1) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Removing libgssapi-krb5-2:amd64 (1.21.3-5) ...
Removing libcrypt-dev:amd64 (1:4.4.38-1) ...
Removing libthai0:amd64 (0.1.29-2+b1) ...
Removing libdatrie1:amd64 (0.2.13-3+b1) ...
Removing libtiff6:amd64 (4.7.0-3) ...
Removing libdeflate0:amd64 (1.23-1+b1) ...
Removing libexpat1:amd64 (2.7.1-1) ...
Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Removing libgnutls30t64:amd64 (3.8.9-2) ...
Removing libp11-kit0:amd64 (0.25.5-3) ...
Removing libffi8:amd64 (3.4.7-1) ...
Removing libfribidi0:amd64 (1.0.16-1) ...
Removing libgfortran5:amd64 (14.2.0-19) ...
Removing libgomp1:amd64 (14.2.0-19) ...
Removing libgraphite2-3:amd64 (1.3.14-2+b1) ...
Removing libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
Removing libsm6:amd64 (2:1.2.6-1) ...
Removing libice6:amd64 (2:1.1.1-1) ...
Removing libicu76:amd64 (76.1-3) ...
Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Removing libidn2-0:amd64 (2.3.8-2) ...
Removing libjbig0:amd64 (2.1-6.1+b2) ...
Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ...
Removing libldap2:amd64 (2.6.9+dfsg-2) ...
Removing liblerc4:amd64 (4.0.0+ds-5) ...
Removing libnghttp2-14:amd64 (1.64.0-1) ...
Removing libnghttp3-9:amd64 (1.8.0-1) ...
Removing libpaper-utils (2.2.5-0.3+b2) ...
Removing libpaper2:amd64 (2.2.5-0.3+b2) ...
Removing libpixman-1-0:amd64 (0.44.0-3) ...
Removing libpng16-16t64:amd64 (1.6.47-1.1) ...
Removing libreadline8t64:amd64 (8.2-6) ...
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ...
Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ...
Removing libwebp7:amd64 (1.5.0-0.1) ...
Removing libsharpyuv0:amd64 (1.5.0-0.1) ...
Removing libssh2-1t64:amd64 (1.11.1-1) ...
Removing libtasn1-6:amd64 (4.20.0-2) ...
Removing libtcl8.6:amd64 (8.6.16+dfsg-1) ...
Removing libthai-data (0.1.29-2) ...
Removing libtirpc-common (1.3.6+ds-1) ...
Removing libunistring5:amd64 (1.3-2) ...
Removing libxss1:amd64 (1:1.2.3-1+b3) ...
Removing libxrender1:amd64 (1:0.9.12-1) ...
Removing libxcb-shm0:amd64 (1.17.0-2+b1) ...
Removing libxcb-render0:amd64 (1.17.0-2+b1) ...
Removing libxext6:amd64 (2:1.3.4-1+b3) ...
Removing linux-libc-dev (6.12.21-1) ...
Removing openssl (3.5.0-1) ...
Removing readline-common (8.2-6) ...
Removing rpcsvc-proto (1.4.3-1) ...
Removing unzip (6.0-29) ...
Removing x11-common (1:7.7+24) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of stop.
Removing xdg-utils (1.2.1-2) ...
Removing zip (3.0-14) ...
Removing libkrb5-3:amd64 (1.21.3-5) ...
Removing libcom-err2:amd64 (1.47.2-1+b1) ...
Removing libk5crypto3:amd64 (1.21.3-5) ...
Removing libkeyutils1:amd64 (1.6.3-5) ...
Removing libkrb5support0:amd64 (1.21.3-5) ...
Removing libx11-6:amd64 (2:1.8.12-1) ...
Removing libx11-data (2:1.8.12-1) ...
Removing libxcb1:amd64 (1.17.0-2+b1) ...
Removing libxau6:amd64 (1:1.0.11-1) ...
Removing libxdmcp6:amd64 (1:1.1.5-1) ...
Processing triggers for libc-bin (2.41-6) ...
0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-crayon', 'r-cran-lattice', 'r-cran-matrix', 'r-cran-matrixstats', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-hdf5array']
0m51.0s INFO: Running scripts post_remove
0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_remove_cleanup']
0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_remove_cleanup']
0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_remove_exceptions']
0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_remove_exceptions']
0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-crayon', 'r-cran-lattice', 'r-cran-matrix', 'r-cran-matrixstats', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64']
0m51.5s DUMP:
(Reading database ... 5520 files and directories currently installed.)
Purging configuration files for ca-certificates (20241223) ...
Removing dangling symlinks from /etc/ssl/certs... done.
Purging configuration files for comerr-dev:amd64 (2.1-1.47.2-1+b1) ...
Purging configuration files for fontconfig (2.15.0-2.3) ...
Purging configuration files for fontconfig-config (2.15.0-2.3) ...
Purging configuration files for fonts-dejavu-core (2.37-8) ...
Purging configuration files for fonts-dejavu-mono (2.37-8) ...
dpkg: warning: ignoring request to remove hdf5-helpers which isn't installed
dpkg: warning: ignoring request to remove krb5-multidev which isn't installed
dpkg: warning: ignoring request to remove libaec-dev which isn't installed
dpkg: warning: ignoring request to remove libaec0 which isn't installed
dpkg: warning: ignoring request to remove libatomic1 which isn't installed
dpkg: warning: ignoring request to remove libblas3 which isn't installed
dpkg: warning: ignoring request to remove libblosc1 which isn't installed
dpkg: warning: ignoring request to remove libbrotli-dev which isn't installed
dpkg: warning: ignoring request to remove libbrotli1 which isn't installed
dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed
dpkg: warning: ignoring request to remove libc6-dev which isn't installed
dpkg: warning: ignoring request to remove libcairo2 which isn't installed
dpkg: warning: ignoring request to remove libcom-err2 which isn't installed
Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ...
dpkg: warning: ignoring request to remove libcurl4-openssl-dev which isn't installed
dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed
dpkg: warning: ignoring request to remove libdatrie1 which isn't installed
dpkg: warning: ignoring request to remove libdeflate0 which isn't installed
dpkg: warning: ignoring request to remove libevent-2.1-7t64 which isn't installed
dpkg: warning: ignoring request to remove libexpat1 which isn't installed
dpkg: warning: ignoring request to remove libffi8 which isn't installed
dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed
dpkg: warning: ignoring request to remove libfreetype6 which isn't installed
dpkg: warning: ignoring request to remove libfribidi0 which isn't installed
dpkg: warning: ignoring request to remove libgfortran5 which isn't installed
Purging configuration files for libglib2.0-0t64:amd64 (2.84.1-1) ...
dpkg: warning: ignoring request to remove libgmp-dev which isn't installed
dpkg: warning: ignoring request to remove libgmpxx4ldbl which isn't installed
dpkg: warning: ignoring request to remove libgnutls-dane0t64 which isn't installed
dpkg: warning: ignoring request to remove libgnutls-openssl27t64 which isn't installed
dpkg: warning: ignoring request to remove libgnutls28-dev which isn't installed
dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed
dpkg: warning: ignoring request to remove libgomp1 which isn't installed
dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed
Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ...
dpkg: warning: ignoring request to remove libgssrpc4t64 which isn't installed
dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed
dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-cpp-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-dev which isn't installed
dpkg: warning: ignoring request to remove libhdf5-fortran-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-hl-cpp-310 which isn't installed
dpkg: warning: ignoring request to remove libhdf5-hl-fortran-310 which isn't installed
dpkg: warning: ignoring request to remove libice6 which isn't installed
dpkg: warning: ignoring request to remove libicu76 which isn't installed
dpkg: warning: ignoring request to remove libidn2-0 which isn't installed
dpkg: warning: ignoring request to remove libidn2-dev which isn't installed
dpkg: warning: ignoring request to remove libjbig0 which isn't installed
dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed
dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed
dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed
dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed
dpkg: warning: ignoring request to remove libkadm5clnt-mit12 which isn't installed
dpkg: warning: ignoring request to remove libkadm5srv-mit12 which isn't installed
dpkg: warning: ignoring request to remove libkdb5-10t64 which isn't installed
dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed
dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed
dpkg: warning: ignoring request to remove libkrb5-dev which isn't installed
dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed
dpkg: warning: ignoring request to remove liblapack3 which isn't installed
dpkg: warning: ignoring request to remove libldap-dev which isn't installed
dpkg: warning: ignoring request to remove libldap2 which isn't installed
dpkg: warning: ignoring request to remove liblerc4 which isn't installed
dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed
dpkg: warning: ignoring request to remove libnghttp2-dev which isn't installed
dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed
dpkg: warning: ignoring request to remove libnghttp3-dev which isn't installed
dpkg: warning: ignoring request to remove libp11-kit-dev which isn't installed
dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed
dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed
dpkg: warning: ignoring request to remove libpaper-utils which isn't installed
Purging configuration files for libpaper2:amd64 (2.2.5-0.3+b2) ...
dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed
dpkg: warning: ignoring request to remove libpkgconf3 which isn't installed
dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed
dpkg: warning: ignoring request to remove libpsl-dev which isn't installed
dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed
Purging configuration files for libreadline8t64:amd64 (8.2-6) ...
dpkg: warning: ignoring request to remove librtmp-dev which isn't installed
dpkg: warning: ignoring request to remove librtmp1 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed
dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed
dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed
dpkg: warning: ignoring request to remove libsm6 which isn't installed
dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed
dpkg: warning: ignoring request to remove libssh2-1-dev which isn't installed
dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed
dpkg: warning: ignoring request to remove libssl-dev which isn't installed
dpkg: warning: ignoring request to remove libsz2 which isn't installed
dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed
dpkg: warning: ignoring request to remove libtasn1-6-dev which isn't installed
dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed
dpkg: warning: ignoring request to remove libthai-data which isn't installed
dpkg: warning: ignoring request to remove libthai0 which isn't installed
dpkg: warning: ignoring request to remove libtiff6 which isn't installed
Purging configuration files for libtirpc-common (1.3.6+ds-1) ...
Purging configuration files for libtirpc3t64:amd64 (1.3.6+ds-1) ...
dpkg: warning: ignoring request to remove libtk8.6 which isn't installed
dpkg: warning: ignoring request to remove libunbound8 which isn't installed
dpkg: warning: ignoring request to remove libunistring5 which isn't installed
dpkg: warning: ignoring request to remove libwebp7 which isn't installed
dpkg: warning: ignoring request to remove libx11-6 which isn't installed
dpkg: warning: ignoring request to remove libx11-data which isn't installed
dpkg: warning: ignoring request to remove libxau6 which isn't installed
dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed
dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed
dpkg: warning: ignoring request to remove libxcb1 which isn't installed
dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed
dpkg: warning: ignoring request to remove libxext6 which isn't installed
dpkg: warning: ignoring request to remove libxft2 which isn't installed
dpkg: warning: ignoring request to remove libxrender1 which isn't installed
dpkg: warning: ignoring request to remove libxss1 which isn't installed
dpkg: warning: ignoring request to remove libxt6t64 which isn't installed
dpkg: warning: ignoring request to remove libzstd-dev which isn't installed
dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed
dpkg: warning: ignoring request to remove nettle-dev which isn't installed
Purging configuration files for openssl (3.5.0-1) ...
Purging configuration files for pkgconf:amd64 (1.8.1-4) ...
dpkg: warning: ignoring request to remove pkgconf-bin which isn't installed
Purging configuration files for r-base-core (4.4.3-1+b1) ...
dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed
dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed
dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rhdf5 which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which isn't installed
dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which isn't installed
dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed
dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed
dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed
dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed
dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed
dpkg: warning: ignoring request to remove r-cran-abind which isn't installed
dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed
dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed
dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed
dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed
Purging configuration files for readline-common (8.2-6) ...
dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed
dpkg: warning: ignoring request to remove unzip which isn't installed
Purging configuration files for x11-common (1:7.7+24) ...
dpkg: warning: ignoring request to remove xdg-utils which isn't installed
dpkg: warning: ignoring request to remove zip which isn't installed
dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed
0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libice6:amd64', 'libicu76:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-delayedarray', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-sparsearray', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-crayon', 'r-cran-lattice', 'r-cran-matrix', 'r-cran-matrixstats', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64']
0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', 'r-bioc-hdf5array']
0m51.5s DUMP:
dpkg: warning: ignoring request to remove r-bioc-hdf5array which isn't installed
0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', 'r-bioc-hdf5array']
0m51.5s INFO: Running scripts post_purge
0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_purge_exceptions']
0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_purge_exceptions']
0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_purge_manual_cleanup']
0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_purge_manual_cleanup']
0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', '--pending']
0m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--purge', '--pending']
0m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--remove', '--pending']
0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg', '--remove', '--pending']
0m51.6s INFO: Running scripts post_test
0m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_test_exceptions']
0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'tmp/scripts/post_test_exceptions']
0m51.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m52.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m52.4s DEBUG: No broken symlinks as far as we can find.
0m52.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-divert', '--list']
0m52.4s DUMP:
local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
local diversion of /home to /home.distrib
diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
diversion of /libx32 to /.libx32.usr-is-merged by base-files
local diversion of /usr/bin/sync to /usr/bin/sync.distrib
diversion of /lib32 to /.lib32.usr-is-merged by base-files
diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'dpkg-divert', '--list']
0m52.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'clean']
0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca', 'apt-get', 'clean']
0m52.4s DEBUG: Recording chroot state
0m53.6s INFO: PASS: Installation and purging test.
0m54.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/shm']
0m54.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/shm']
0m54.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/console']
0m54.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/console']
0m54.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/ptmx']
0m54.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/ptmx']
0m54.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/pts']
0m54.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/dev/pts']
0m54.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/proc']
0m54.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca/proc']
0m54.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m54.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6eb9bbca']
0m54.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6eb9bbca
0m54.3s INFO: PASS: All tests.
0m54.3s INFO: piuparts run ends.
ret=0
End: 2025-04-09 10:39:35 GMT