Start: 2026-03-16 09:33:10 GMT Package: r-bioc-rcwl Version: 1.22.0+ds-3 Installed-Size: 425 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.20, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Suggests: r-cran-knitr, r-cran-rmarkdown Description: An R interface to the Common Workflow Language Homepage: https://rcwl.org/Rcwl/ Description-md5: 93cc119718e4f3d84d6372663e7d3cc6 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.22.0+ds-3_all.deb Size: 327948 MD5sum: 73aaf84e8e08fecaf17871c3bc57a5bf SHA256: edb0ddac62525b80f2c77042dbd6a74496931a9d28b8cbab3b26f7e2e47ca0c3 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-rcwl=1.22.0+ds-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-rcwl=1.22.0+ds-3 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-44-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.164-1 (2026-03-09) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpe976ordk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpe976ordk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe976ordk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe976ordk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe976ordk/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe976ordk/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpe976ordk/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpe976ordk/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'update'] 0m3.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [187 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.4 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7536 kB] Fetched 18.1 MB in 2s (8774 kB/s) Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-16-base libgcc-s1 libstdc++6 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 875 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16-20260315-1 [35.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16-20260315-1 [765 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16-20260315-1 [74.1 kB] Fetched 875 kB in 0s (16.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../gcc-16-base_16-20260315-1_amd64.deb ... Unpacking gcc-16-base:amd64 (16-20260315-1) over (16-20260308-1) ... Setting up gcc-16-base:amd64 (16-20260315-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../libstdc++6_16-20260315-1_amd64.deb ... Unpacking libstdc++6:amd64 (16-20260315-1) over (16-20260308-1) ... Setting up libstdc++6:amd64 (16-20260315-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../libgcc-s1_16-20260315-1_amd64.deb ... Unpacking libgcc-s1:amd64 (16-20260315-1) over (16-20260308-1) ... Setting up libgcc-s1:amd64 (16-20260315-1) ... Processing triggers for libc-bin (2.42-13) ... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s DUMP: 4cbffd18a757ab467e045dcdc4c6f84a - 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.8s INFO: Running scripts post_setup 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_dummy_users'] 0m6.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_dummy_users'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_fake-essential'] 0m7.8s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.69). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1777 kB of archives. After this operation, 4988 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9532 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0053 [41.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.25 [604 kB] Preconfiguring packages ... Fetched 1777 kB in 0s (25.2 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20251231-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20251231-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-9+b1_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9+b1) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-9+b1_amd64.deb ... Unpacking procps (2:4.0.4-9+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b5_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b5) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0053_all.deb ... Moving old data out of the way Unpacking ucf (3.0053) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.25_all.deb ... Unpacking dbconfig-common (2.0.25) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-9+b1) ... Setting up libncursesw6:amd64 (6.6+20251231-1) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.4-9+b1) ... Setting up ucf (3.0053) ... Setting up dbconfig-common (2.0.25) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.42-13) ... 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_fake-essential'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_minimize'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_minimize'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_zz_backports'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_setup_zz_backports'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'clean'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'clean'] 0m7.9s DEBUG: Recording chroot state 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DUMP: install ok installed apt apt 3.1.16 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.41.3-4 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260315-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-13 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-13 install ok installed libc6:amd64 libc6 2.42-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260315-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-8 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-4 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9+b1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-4 install ok installed libssl3t64:amd64 libssl3t64 3.6.1-2 install ok installed libstdc++6:amd64 libstdc++6 16-20260315-1 install ok installed libsystemd0:amd64 libsystemd0 260~rc4-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 260~rc4-1 install ok installed libuuid1:amd64 libuuid1 2.41.3-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed login login 1:4.16.0-2+really2.41.3-4 install ok installed login.defs login.defs 1:4.19.3-1 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.41.3-4 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.1-2 install ok installed passwd passwd 1:4.19.3-1 install ok installed perl-base perl-base 5.40.1-7 install ok installed procps procps 2:4.0.4-9+b1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-5 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026a-1 install ok installed ucf ucf 3.0053 install ok installed util-linux util-linux 2.41.3-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-3 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-divert', '--list'] 0m8.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-divert', '--list'] 0m8.3s INFO: Running scripts is_testable 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/is_testable_uninstallable'] 0m8.3s INFO: apt-cache does not know about any of the requested packages 0m8.3s INFO: Running scripts pre_test 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_test_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_test_root_password'] 0m8.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_test_root_password'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 0m8.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 0m9.1s DEBUG: No broken symlinks as far as we can find. 0m9.1s INFO: Running scripts pre_install 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl=1.22.0+ds-3'] 0m9.9s DUMP: Package: r-bioc-rcwl Version: 1.22.0+ds-3 Installed-Size: 425 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.20, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Suggests: r-cran-knitr, r-cran-rmarkdown Description-en: An R interface to the Common Workflow Language The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines. Description-md5: 93cc119718e4f3d84d6372663e7d3cc6 Homepage: https://rcwl.org/Rcwl/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.22.0+ds-3_all.deb Size: 327948 MD5sum: 73aaf84e8e08fecaf17871c3bc57a5bf SHA256: edb0ddac62525b80f2c77042dbd6a74496931a9d28b8cbab3b26f7e2e47ca0c3 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl=1.22.0+ds-3'] 0m10.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: r-api-4.0, r-api-bioc-3.20, r-cran-yaml, r-bioc-s4vectors (>= 0.42.1), r-bioc-biocparallel (>= 1.38.0), r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool, r-bioc-basilisk (>= 1.16.0) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m10.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp83c4ej8f/piuparts-depends-dummy'] 0m10.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp83c4ej8f/piuparts-depends-dummy.deb'. 0m10.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp83c4ej8f/piuparts-depends-dummy'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.0s DUMP: 3.1.16 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m10.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp83c4ej8f/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpe976ordk/tmp 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m51.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-15-base graphviz javascript-common libabsl20240722 libamd3 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt6 libcgraph8 libcolamd3 libcom-err2 libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgcrypt20 libgd3 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu78 libidn2-0 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-15-dev libsuitesparseconfig7 libsvtav1enc2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.13 python3.13-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto unzip x11-common xdg-utils zip Suggested packages: podman | docker.io | singularity-container cwltool-doc gsfonts graphviz-doc apache2 | lighttpd | httpd libboost-doc libboost1.90-doc libboost-atomic1.90-dev libboost-chrono1.90-dev libboost-container1.90-dev libboost-context1.90-dev libboost-contract1.90-dev libboost-coroutine1.90-dev libboost-date-time1.90-dev libboost-exception1.90-dev libboost-fiber1.90-dev libboost-filesystem1.90-dev libboost-graph-parallel1.90-dev libboost-graph1.90-dev libboost-iostreams1.90-dev libboost-json1.90-dev libboost-locale1.90-dev libboost-log1.90-dev libboost-math1.90-dev libboost-mpi-python1.90-dev libboost-mpi1.90-dev libboost-nowide1.90-dev libboost-numpy1.90-dev libboost-program-options1.90-dev libboost-python1.90-dev libboost-random1.90-dev libboost-regex1.90-dev libboost-serialization1.90-dev libboost-stacktrace1.90-dev libboost-test1.90-dev libboost-thread1.90-dev libboost-timer1.90-dev libboost-type-erasure1.90-dev libboost-url1.90-dev libboost-wave1.90-dev libboost1.90-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev rng-tools libgd-tools low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gnutls-bin krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libstdc++-15-doc tcl8.6 tk8.6 nodejs citation-style-language-styles context ghc groff libjs-katex librsvg2-bin pandoc-citeproc perl php ruby texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-xetex wkhtmltopdf python3-doc python3-tk python3-venv python-charset-normalizer-doc cwl-utils python-lxml-doc python-prov-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc singularity-container python3-backports.zstd | python3-supported-min python3-brotli python3.13-venv python3.13-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-getopt r-cran-covr r-cran-testthat r-cran-inline r-cran-rmpi r-cran-rlecuyer readline-doc Recommended packages: nodejs fonts-liberation manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n libheif-plugin-x265 libheif-plugin-aomenc node-jquery krb5-locales libldap-common publicsuffix libsasl2-modules python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-numpy python3-pygraphviz python3-scipy python3-yaml python3-html5rdf python3-orjson black r-recommended r-base-dev r-doc-html r-cran-survival r-cran-testthat node-highlight.js r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-15-base graphviz javascript-common libabsl20240722 libamd3 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt6 libcgraph8 libcolamd3 libcom-err2 libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgcrypt20 libgd3 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu78 libidn2-0 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-15-dev libsuitesparseconfig7 libsvtav1enc2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data piuparts-depends-dummy python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.13 python3.13-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto unzip x11-common xdg-utils zip 0 upgraded, 316 newly installed, 0 to remove and 0 not upgraded. Need to get 251 MB/251 MB of archives. After this operation, 1051 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [740 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.4-1 [116 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Get:16 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.1-2 [1513 kB] Get:17 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260223 [158 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml.clib amd64 0.2.15+ds-1 [181 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.2.25+ds-1 [9612 B] Get:21 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.4-2 [171 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.11-1 [41.7 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.6.3-1 [120 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:26 http://deb.debian.org/debian sid/main amd64 python3-msgpack amd64 1.1.2-2 [107 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3-cachecontrol all 0.14.3-1 [18.4 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Get:29 http://deb.debian.org/debian sid/main amd64 python3-mistune all 3.1.4-1 [35.7 kB] Get:30 http://deb.debian.org/debian sid/main amd64 python3-mypy-extensions all 1.1.0-1 [6656 B] Get:31 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:32 http://deb.debian.org/debian sid/main amd64 python3-rdflib all 7.4.0-1 [480 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.25.0-1 [19.1 kB] Get:34 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-7 [163 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-7 [173 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-schema-salad amd64 8.9.20251102115403-1 [1865 kB] Get:37 http://deb.debian.org/debian sid/main amd64 cwl-upgrader all 1.2.14-1 [16.2 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-argcomplete all 3.6.3-1 [41.3 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.0-1 [64.3 kB] Get:42 http://deb.debian.org/debian sid/main amd64 python3-cwl-utils all 0.40-1 [139 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.59-4 [88.5 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.12.1-2 [900 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.43-0.3 [158 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 6.0.2-1+b3 [2229 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.4.2-4 [24.1 MB] Get:50 http://deb.debian.org/debian sid/main amd64 libcdt6 amd64 14.1.2-1 [18.6 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libcgraph8 amd64 14.1.2-1 [58.8 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.5.4-9 [416 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libpathplan4 amd64 14.1.2-1 [29.9 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libxdot4 amd64 14.1.2-1 [21.9 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libgvc7 amd64 14.1.2-1 [376 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libgvpr2 amd64 14.1.2-1 [125 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.55-1 [288 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.2+dfsg-1 [492 kB] Get:60 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:61 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:62 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b1 [259 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b1 [20.8 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2 [27.9 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1+b1 [27.7 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3 [544 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.3-1+b1 [564 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libgav1-2 amd64 0.20.0-2 [373 kB] Get:79 http://deb.debian.org/debian sid/main amd64 librav1e0.8 amd64 0.8.1-7 [978 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [176 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.4.0-1 [146 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b1 [116 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libde265-0 amd64 1.0.16-1+b1 [195 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libheif-plugin-libde265 amd64 1.21.2-3 [18.0 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libheif-plugin-dav1d amd64 1.21.2-3 [20.6 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libheif1 amd64 1.21.2-3 [650 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 4.4.1-1+b1 [258 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-2+b1 [49.5 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:92 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5+b1 [199 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b1 [336 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libxpm4 amd64 1:3.5.17-1+b4 [56.6 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libgd3 amd64 2.3.3-13+b1 [127 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libgvplugin-gd8 amd64 14.1.2-1 [27.3 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16-20260315-1 [10.4 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.87.2-3 [1552 kB] Get:100 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5 [26.7 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-11+b1 [77.0 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-1 [172 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-1 [39.6 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-1 [52.2 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.57.0-1 [229 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [58.7 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [36.1 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libgvplugin-pango8 amd64 14.1.2-1 [31.6 kB] Get:111 http://deb.debian.org/debian sid/main amd64 graphviz amd64 14.1.2-1 [60.6 kB] Get:112 http://deb.debian.org/debian sid/main amd64 python3-pydot all 4.0.1-1 [45.0 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-prov all 2.1.1-1 [100 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.1.0-1 [224 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get:116 http://deb.debian.org/debian sid/main amd64 python3-uc-micro all 2.0.0-1 [6028 B] Get:117 http://deb.debian.org/debian sid/main amd64 python3-linkify-it all 2.1.0-1 [18.7 kB] Get:118 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 3.0.0-3 [59.5 kB] Get:119 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Get:120 http://deb.debian.org/debian sid/main amd64 python3-rich all 13.9.4-2 [202 kB] Get:121 http://deb.debian.org/debian sid/main amd64 python3-rich-argparse all 1.6.0-2 [16.9 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3-spython all 0.3.13-2 [55.2 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3-arcp all 0.2.1-7 [13.6 kB] Get:124 http://deb.debian.org/debian sid/main amd64 cwltool all 3.1.20260108082145-1 [525 kB] Get:125 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:126 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:127 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-15 [35.9 kB] Get:128 http://deb.debian.org/debian sid/main amd64 javascript-common all 12+nmu1 [4864 B] Get:129 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16-20260315-1 [151 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.12.2+dfsg-1 [33.7 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.12.2+dfsg-1 [50.6 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16-20260315-1 [2888 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7+b1 [209 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16-20260315-1 [26.9 kB] Get:135 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16-20260315-1 [1281 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16-20260315-1 [2572 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16-20260315-1 [1136 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16-20260315-1 [1580 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16-20260315-1 [147 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libgcc-15-dev amd64 15.2.0-15 [2719 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.42-13 [61.5 kB] Get:142 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.19.8-1 [1949 kB] Get:143 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.42-13 [2016 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libstdc++-15-dev amd64 15.2.0-15 [2777 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libboost1.90-dev amd64 1.90.0-5+b1 [11.3 MB] Get:147 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.90.0.1 [3048 B] Get:148 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.12.2+dfsg-1 [42.5 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.21.0-1 [136 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Get:155 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.68.0-2 [79.2 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.21.0-1 [25.9 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b2 [59.8 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.2-2 [470 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.12-3 [1520 kB] Get:168 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3+b1 [60.7 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1+b1 [245 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.19.0-1 [408 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16-20260315-1 [884 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-2+b1 [392 kB] Get:173 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b1 [66.8 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.2-2 [10.0 MB] Get:176 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-7 [52.3 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.2+dfsg-2 [519 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libjs-highlight.js all 10.7.3+dfsg-3 [177 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [4008 B] Get:185 http://deb.debian.org/debian sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libjs-prettify all 2015.12.04+dfsg-3 [42.0 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:192 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7+b1 [2550 kB] Get:193 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.8-1+b1 [149 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.19-1+b1 [22.5 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.3+b3 [16.7 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.3+b3 [16.5 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b1 [37.9 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1+b1 [1053 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.17-1+b1 [799 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.51.0-2+b1 [156 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b1 [191 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:207 http://deb.debian.org/debian sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:208 http://deb.debian.org/debian sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:209 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5.1 [12.4 kB] Get:210 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.9-1 [524 kB] Get:211 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.9-1 [28.7 MB] Get:212 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-15 [235 kB] Get:213 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-29 [173 kB] Get:214 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:215 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.5.3-1 [28.7 MB] Get:216 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.52.0-3 [626 kB] Get:217 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-9-1 [1450 kB] Get:218 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-4-1+b1 [4162 kB] Get:219 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.22-1 [94.8 kB] Get:220 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:221 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.1.1-2 [2151 kB] Get:222 http://deb.debian.org/debian sid/main amd64 r-cran-rcpptoml amd64 0.2.3+dfsg-2 [114 kB] Get:223 http://deb.debian.org/debian sid/main amd64 r-cran-rprojroot all 2.1.1-1 [132 kB] Get:224 http://deb.debian.org/debian sid/main amd64 r-cran-here all 1.0.2-1 [50.2 kB] Get:225 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-1 [447 kB] Get:226 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-8-2 [41.9 kB] Get:227 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.4-1 [49.5 kB] Get:228 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.7-1 [1718 kB] Get:229 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.2+dfsg-2 [226 kB] Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-reticulate amd64 1.41.0.1+dfsg-2 [1570 kB] Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-2 [27.9 kB] Get:232 http://deb.debian.org/debian sid/main amd64 r-bioc-dir.expiry all 1.14.0+ds-3 [32.2 kB] Get:233 http://deb.debian.org/debian sid/main amd64 r-bioc-basilisk.utils all 1.18.0+ds-3 [78.6 kB] Get:234 http://deb.debian.org/debian sid/main amd64 r-bioc-basilisk amd64 1.18.0+ds-3 [98.9 kB] Get:235 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-3 [152 kB] Get:236 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-3 [119 kB] Get:237 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-4 [20.6 kB] Get:238 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:239 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.3-1 [232 kB] Get:243 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.40.0-3 [1327 kB] Get:244 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-3 [2067 kB] Get:245 http://deb.debian.org/debian sid/main amd64 r-cran-backports amd64 1.5.0-3+b1 [121 kB] Get:246 http://deb.debian.org/debian sid/main amd64 r-cran-base64enc amd64 0.1-6-1 [30.7 kB] Get:247 http://deb.debian.org/debian sid/main amd64 r-cran-base64url amd64 1.4-3 [26.8 kB] Get:248 http://deb.debian.org/debian sid/main amd64 r-cran-brew all 1.0-10-2 [70.6 kB] Get:249 http://deb.debian.org/debian sid/main amd64 r-cran-checkmate amd64 2.3.4-1 [728 kB] Get:250 http://deb.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.18.2.1+dfsg-2 [2337 kB] Get:251 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.39-1 [212 kB] Get:252 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 1.6.7+dfsg-1 [256 kB] Get:253 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-2 [164 kB] Get:254 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.5-1 [1380 kB] Get:255 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:256 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:257 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.0-2 [165 kB] Get:258 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.7.1-1 [1573 kB] Get:259 http://deb.debian.org/debian sid/main amd64 r-cran-hms all 1.1.4-1 [110 kB] Get:260 http://deb.debian.org/debian sid/main amd64 r-cran-prettyunits all 1.2.0-2 [160 kB] Get:261 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:262 http://deb.debian.org/debian sid/main amd64 r-cran-progress all 1.2.3-2 [94.6 kB] Get:263 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.7-1+b1 [896 kB] Get:264 http://deb.debian.org/debian sid/main amd64 r-cran-batchtools amd64 0.9.18+dfsg-1 [719 kB] Get:265 http://deb.debian.org/debian sid/main amd64 r-cran-bit amd64 4.6.0+dfsg-2 [454 kB] Get:266 http://deb.debian.org/debian sid/main amd64 r-cran-bit64 amd64 4.6.0-1-5 [492 kB] Get:267 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-2 [72.2 kB] Get:268 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-2 [73.8 kB] Get:269 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.9-1 [378 kB] Get:270 http://deb.debian.org/debian sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.4 kB] Get:271 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:272 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.13-1 [47.2 kB] Get:273 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.10+dfsg-1 [979 kB] Get:274 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.9.0+dfsg-4 [4664 kB] Get:275 http://deb.debian.org/debian sid/main amd64 r-cran-clipr all 0.8.0-2 [53.8 kB] Get:276 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 2.0.0-1 [123 kB] Get:277 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:278 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.4-1 [207 kB] Get:279 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.6-1 [138 kB] Get:280 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.11.1+dfsg-1 [457 kB] Get:281 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.3.1+dfsg-1 [453 kB] Get:282 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-2 [223 kB] Get:283 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.2.0-1 [1574 kB] Get:284 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 1.0.5-1 [117 kB] Get:285 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.56+dfsg-1 [592 kB] Get:286 http://deb.debian.org/debian sid/main amd64 r-cran-highr all 0.12+dfsg-1 [38.3 kB] Get:287 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB] Get:288 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.51+dfsg-2 [847 kB] Get:289 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.3-2 [1311 kB] Get:290 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.58-1 [150 kB] Get:291 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.4.7+dfsg-1 [141 kB] Get:292 http://deb.debian.org/debian sid/main amd64 r-cran-promises amd64 1.3.2+dfsg-2 [293 kB] Get:293 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.16+dfsg-1 [513 kB] Get:294 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-8-1 [737 kB] Get:295 http://deb.debian.org/debian sid/main amd64 r-cran-sourcetools amd64 0.1.7-1-2 [46.0 kB] Get:296 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.10.0+dfsg-3 [3188 kB] Get:297 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1474 kB] Get:298 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-2 [124 kB] Get:299 http://deb.debian.org/debian sid/main amd64 r-cran-igraph amd64 2.2.2-1 [5360 kB] Get:300 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.2.1-1 [574 kB] Get:301 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-2 [54.0 kB] Get:302 http://deb.debian.org/debian sid/main amd64 r-cran-tzdb amd64 0.5.0-1 [515 kB] Get:303 http://deb.debian.org/debian sid/main amd64 r-cran-vroom amd64 1.7.0-1 [895 kB] Get:304 http://deb.debian.org/debian sid/main amd64 r-cran-readr amd64 2.2.0-1 [779 kB] Get:305 http://deb.debian.org/debian sid/main amd64 r-cran-rstudioapi all 0.18.0-1 [335 kB] Get:306 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-2 [1412 kB] Get:307 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-2 [63.2 kB] Get:308 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.3-1 [1299 kB] Get:309 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.4.0-1 [800 kB] Get:310 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.6.0-1 [323 kB] Get:311 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.2-1 [1162 kB] Get:312 http://deb.debian.org/debian sid/main amd64 r-cran-visnetwork all 2.1.4+ds-1 [2984 kB] Get:313 http://deb.debian.org/debian sid/main amd64 r-cran-diagrammer all 1.0.11+ds-3 [1506 kB] Get:314 http://deb.debian.org/debian sid/main amd64 r-cran-r.methodss3 all 1.8.2-2 [86.0 kB] Get:315 http://deb.debian.org/debian sid/main amd64 r-cran-r.oo all 1.27.1-1 [982 kB] Get:316 http://deb.debian.org/debian sid/main amd64 r-cran-r.utils all 2.13.0-2 [1434 kB] Preconfiguring packages ... Fetched 251 MB in 2s (128 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5441 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.4-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.12-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.12-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.12-1_amd64.deb ... Unpacking python3.13-minimal (3.13.12-1) ... Setting up libpython3.13-minimal:amd64 (3.13.12-1) ... Setting up libexpat1:amd64 (2.7.4-1) ... Setting up python3.13-minimal (3.13.12-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5775 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.9-3_amd64.deb ... Unpacking python3-minimal (3.13.9-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.5.2-3+b1_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-3+b1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.46.1-9+b1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-9+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.12-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.12-1) ... 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Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up liblsan0:amd64 (16-20260315-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-7) ... Setting up libitm1:amd64 (16-20260315-1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libice6:amd64 (2:1.1.1-1+b1) ... Setting up libavif16:amd64 (1.4.0-1) ... Setting up liblapack3:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libgcc-15-dev:amd64 (15.2.0-15) ... Setting up libamd3:amd64 (1:7.12.2+dfsg-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b4) ... Setting up libxrender1:amd64 (1:0.9.12-1+b1) ... Setting up libcolamd3:amd64 (1:7.12.2+dfsg-1) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-4+b1) ... Setting up libpaper-utils (2.2.5-0.3+b3) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up libthai0:amd64 (0.1.30-1) ... Setting up ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 144 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.87.2-3) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (3.9-1) ... Setting up libfreetype6:amd64 (2.14.2+dfsg-1) ... Setting up libglpk40:amd64 (5.0-2+b1) ... Setting up libp11-kit0:amd64 (0.26.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.21.0-1) ... Setting up libgvc7:amd64 (14.1.2-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libc6-dev:amd64 (2.42-13) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libsm6:amd64 (2:1.2.6-1+b1) ... Setting up libpython3.13-stdlib:amd64 (3.13.12-1) ... Setting up libpython3-stdlib:amd64 (3.13.9-3) ... Setting up libgnutls30t64:amd64 (3.8.12-3) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.12-1) ... Setting up libtk8.6:amd64 (8.6.17-1+b1) ... Setting up libpango-1.0-0:amd64 (1.57.0-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b2) ... Setting up python3 (3.13.9-3) ... Setting up python3-networkx (3.4.2-4) ... Setting up libcairo2:amd64 (1.18.4-3) ... Setting up python3-uc-micro (2.0.0-1) ... Setting up python3-psutil (7.1.0-1) ... Setting up python3-pygments (2.19.2+dfsg-1) ... Setting up python3-packaging (26.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libstdc++-15-dev:amd64 (15.2.0-15) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2026.2.25+ds-1) ... Setting up python3-spython (0.3.13-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ... Setting up python3-mdurl (0.1.2-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b1) ... Setting up python3-idna (3.11-1) ... Setting up python3-typing-extensions (4.15.0-2) ... Setting up python3-urllib3 (2.6.3-1) ... Setting up python3-lxml:amd64 (6.0.2-1+b3) ... Setting up python3-rdflib (7.4.0-1) ... Setting up python3-linkify-it (2.1.0-1) ... Setting up libboost1.90-dev:amd64 (1.90.0-5+b1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-msgpack (1.1.2-2) ... Setting up libboost-dev:amd64 (1.90.0.1) ... Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ... Setting up python3-argcomplete (3.6.3-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-mistune (3.1.4-1) ... Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ... Setting up python3-arcp (0.2.1-7) ... Setting up python3-filelock (3.25.0-1) ... Setting up libcurl4t64:amd64 (8.19.0-1) ... Setting up python3-charset-normalizer (3.4.4-2) ... Setting up python3-mypy-extensions (1.1.0-1) ... Setting up libgvplugin-pango8:amd64 (14.1.2-1) ... Setting up python3-ruamel.yaml.clib (0.2.15+ds-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up r-base-core (4.5.3-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-2) ... Setting up r-cran-labeling (0.4.3-2) ... Setting up r-cran-sourcetools (0.1.7-1-2) ... Setting up r-cran-futile.options (1.0.1-4) ... Setting up r-cran-lattice (0.22-9-1) ... Setting up r-cran-farver (2.1.2-2) ... Setting up r-cran-formatr (1.14-3) ... Setting up python3-markdown-it (3.0.0-3) ... Setting up python3-ruamel.yaml (0.18.10+ds-1) ... Setting up r-cran-viridislite (0.4.3-1) ... Setting up python3-cachecontrol (0.14.3-1) ... Setting up r-cran-clipr (0.8.0-2) ... Setting up r-cran-commonmark (2.0.0-1) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-magrittr (2.0.4-1) ... Setting up r-cran-rappdirs (0.3.4-1) ... Setting up r-cran-filelock (1.0.3-2) ... Setting up r-cran-littler (0.3.22-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-fs (1.6.7+dfsg-1) ... Setting up r-cran-rcpp (1.1.1-2) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.52.0-3) ... Setting up r-cran-rlang (1.1.7-1) ... Setting up r-cran-xfun (0.56+dfsg-1) ... Setting up python3-rich (13.9.4-2) ... Setting up r-cran-withr (3.0.2+dfsg-2) ... Setting up r-cran-backports (1.5.0-3+b1) ... Setting up r-cran-mime (0.13-1) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-base64enc (0.1-6-1) ... Setting up r-cran-digest (0.6.39-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-lambda.r (1.2.4-3) ... Setting up r-cran-evaluate (1.0.5-1) ... Setting up r-cran-highr (0.12+dfsg-1) ... Setting up python3-schema-salad (8.9.20251102115403-1) ... Setting up r-cran-prettyunits (1.2.0-2) ... Setting up r-cran-checkmate (2.3.4-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-data.table (1.18.2.1+dfsg-2) ... Setting up r-cran-glue (1.8.0-2) ... Setting up r-cran-bit (4.6.0+dfsg-2) ... Setting up r-cran-xtable (1:1.8-8-1) ... Setting up r-cran-cli (3.6.5-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-rprojroot (2.1.1-1) ... Setting up r-cran-bit64 (4.6.0-1-5) ... Setting up r-cran-fastmap (1.2.0-2) ... Setting up r-cran-png (0.1-8-2) ... Setting up r-cran-r.methodss3 (1.8.2-2) ... Setting up r-cran-jsonlite (2.0.0+dfsg-1) ... Setting up r-cran-rstudioapi (0.18.0-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.6-1) ... Setting up r-cran-brew (1.0-10-2) ... Setting up r-cran-stringi (1.8.7-1+b1) ... Setting up cwl-upgrader (1.2.14-1) ... Setting up r-cran-cpp11 (0.5.3-1) ... Setting up r-cran-rcolorbrewer (1.1-3-2) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-3) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-scales (1.4.0-1) ... Setting up r-cran-later (1.4.7+dfsg-1) ... Setting up r-cran-matrix (1.7-4-1+b1) ... Setting up r-cran-here (1.0.2-1) ... Setting up r-cran-htmltools (0.5.9-1) ... Setting up r-cran-tinytex (0.58-1) ... Setting up r-cran-knitr (1.51+dfsg-2) ... Setting up r-cran-rcpptoml (0.2.3+dfsg-2) ... Setting up python3-rich-argparse (1.6.0-2) ... Setting up r-cran-cachem (1.1.0-2) ... Setting up r-cran-sass (0.4.10+dfsg-1) ... Setting up r-cran-tzdb (0.5.0-1) ... Setting up r-cran-reticulate (1.41.0.1+dfsg-2) ... Setting up r-bioc-dir.expiry (1.14.0+ds-3) ... Setting up r-cran-vctrs (0.7.1-1) ... Setting up r-cran-pillar (1.11.1+dfsg-1) ... Setting up r-bioc-basilisk.utils (1.18.0+ds-3) ... Setting up r-cran-base64url (1.4-3) ... Setting up r-cran-stringr (1.6.0-1) ... Setting up r-bioc-biocparallel (1.40.0-3) ... Setting up r-cran-tibble (3.3.1+dfsg-1) ... Setting up r-cran-fontawesome (0.5.3-2) ... Setting up python3-cwl-utils (0.40-1) ... Setting up r-cran-igraph (2.2.2-1) ... Setting up r-cran-r.oo (1.27.1-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... Setting up r-cran-tidyselect (1.2.1+dfsg-2) ... Setting up r-bioc-basilisk (1.18.0+ds-3) ... Setting up r-cran-hms (1.1.4-1) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-promises (1.3.2+dfsg-2) ... Setting up r-cran-purrr (1.2.1-1) ... Setting up r-cran-dplyr (1.2.0-1) ... Setting up r-cran-progress (1.2.3-2) ... Setting up r-cran-r.utils (2.13.0-2) ... Setting up r-cran-vroom (1.7.0-1) ... Setting up r-cran-httpuv (1.6.16+dfsg-1) ... Setting up r-cran-bslib (0.9.0+dfsg-4) ... Setting up r-cran-readr (2.2.0-1) ... Setting up r-cran-tidyr (1.3.2-1) ... Setting up r-cran-batchtools (0.9.18+dfsg-1) ... Setting up r-cran-shiny (1.10.0+dfsg-3) ... Setting up r-cran-rmarkdown (2.30+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-2) ... Setting up r-cran-visnetwork (2.1.4+ds-1) ... Setting up r-cran-diagrammer (1.0.11+ds-3) ... Setting up libheif-plugin-libde265:amd64 (1.21.2-3) ... Setting up libheif1:amd64 (1.21.2-3) ... Setting up libgd3:amd64 (2.3.3-13+b1) ... Setting up libheif-plugin-dav1d:amd64 (1.21.2-3) ... Setting up libgvplugin-gd8:amd64 (14.1.2-1) ... Setting up graphviz (14.1.2-1) ... Setting up python3-pydot (4.0.1-1) ... Setting up python3-prov (2.1.1-1) ... Setting up cwltool (3.1.20260108082145-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-13) ... Processing triggers for ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m51.6s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m51.6s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpe976ordk/./tmp/piuparts-depends-dummy.deb 0m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m51.6s DUMP: piuparts-depends-dummy install ok installed 0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m51.7s DUMP: (Reading database ... 56213 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'clean'] 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'clean'] 0m51.8s DEBUG: Recording chroot state 0m53.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 0m55.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 0m59.5s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js /usr/share/doc/python3-schema-salad/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-schema-salad/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-schema-salad/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-schema-salad/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js /usr/share/doc/python3-schema-salad/html/_static/js/theme.js -> ../../../../../sphinx_rtd_theme/static/js/theme.js /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.svg -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.eot -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf /usr/share/doc/python3-schema-salad/html/_static/css/theme.css -> ../../../../../sphinx_rtd_theme/static/css/theme.css /usr/share/doc/python3-schema-salad/html/_static/css/badge_only.css -> ../../../../../sphinx_rtd_theme/static/css/badge_only.css 0m59.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy'] 1m0.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy'] 1m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m0.3s DUMP: r-bioc-rcwl: Installed: (none) Candidate: 1.22.0+ds-3 Version table: 1.22.0+ds-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.22.0+ds-3'] 1m1.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-rcwl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 328 kB of archives. After this operation, 435 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-rcwl all 1.22.0+ds-3 [328 kB] Fetched 328 kB in 0s (7907 kB/s) Selecting previously unselected package r-bioc-rcwl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56213 files and directories currently installed.) Preparing to unpack .../r-bioc-rcwl_1.22.0+ds-3_all.deb ... Unpacking r-bioc-rcwl (1.22.0+ds-3) ... Setting up r-bioc-rcwl (1.22.0+ds-3) ... 1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.22.0+ds-3'] 1m1.3s INFO: Running scripts post_install 1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_install_exceptions'] 1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_install_exceptions'] 1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'systemd-tmpfiles', '--cat-config'] 1m1.3s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m1.3s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'systemd-tmpfiles', '--cat-config'] 1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'remove', 'r-bioc-rcwl'] 1m2.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-15-base graphviz javascript-common libabsl20240722 libamd3 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt6 libcgraph8 libcolamd3 libcom-err2 libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgd3 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu78 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-15-dev libsuitesparseconfig7 libsvtav1enc2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.13 python3.13-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto unzip x11-common xdg-utils zip Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: r-bioc-rcwl 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 435 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56246 files and directories currently installed.) Removing r-bioc-rcwl (1.22.0+ds-3) ... 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'remove', 'r-bioc-rcwl'] 1m2.1s INFO: Reinstalling after remove 1m2.1s INFO: Running scripts pre_install 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_database-server'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_database-server'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_exceptions'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_exceptions'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_extras'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_extras'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy'] 1m2.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy'] 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m2.2s DUMP: r-bioc-rcwl: Installed: (none) Candidate: 1.22.0+ds-3 Version table: 1.22.0+ds-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.22.0+ds-3'] 1m3.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-rcwl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/328 kB of archives. After this operation, 435 kB of additional disk space will be used. Selecting previously unselected package r-bioc-rcwl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56213 files and directories currently installed.) Preparing to unpack .../r-bioc-rcwl_1.22.0+ds-3_all.deb ... Unpacking r-bioc-rcwl (1.22.0+ds-3) ... Setting up r-bioc-rcwl (1.22.0+ds-3) ... 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.22.0+ds-3'] 1m3.2s INFO: Running scripts post_install 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_install_exceptions'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_install_exceptions'] 1m3.2s INFO: Running scripts pre_install 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_database-server'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_database-server'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_exceptions'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_exceptions'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_extras'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_extras'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy'] 1m3.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy'] 1m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m3.3s DUMP: r-bioc-rcwl: Installed: 1.22.0+ds-3 Candidate: 1.22.0+ds-3 Version table: *** 1.22.0+ds-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-rcwl=1.22.0+ds-3'] 1m4.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/328 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56246 files and directories currently installed.) Preparing to unpack .../r-bioc-rcwl_1.22.0+ds-3_all.deb ... Unpacking r-bioc-rcwl (1.22.0+ds-3) over (1.22.0+ds-3) ... Setting up r-bioc-rcwl (1.22.0+ds-3) ... 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-rcwl=1.22.0+ds-3'] 1m4.3s INFO: Running scripts post_install 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_install_exceptions'] 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_install_exceptions'] 1m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 1m6.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 1m10.2s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) /usr/share/doc/python3-schema-salad/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/js/theme.js -> ../../../../../sphinx_rtd_theme/static/js/theme.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.svg -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.eot -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/css/theme.css -> ../../../../../sphinx_rtd_theme/static/css/theme.css (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/css/badge_only.css -> ../../../../../sphinx_rtd_theme/static/css/badge_only.css (python3-schema-salad) 1m12.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe976ordk', '-ac', '--ignore-obsolete'] 1m17.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe976ordk', '-ac', '--ignore-obsolete'] 1m17.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m17.2s DUMP: 0.15.9~deb12u1 1m17.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m17.2s INFO: Running adequate version 0.15.9~deb12u1 now. 1m17.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'r-bioc-rcwl'] 1m17.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'r-bioc-rcwl'] 1m17.3s INFO: Running scripts pre_remove 1m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_exceptions'] 1m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_exceptions'] 1m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m26.5s DUMP: install ok installed apt apt 3.1.16 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.41.3-4 install ok installed ca-certificates ca-certificates 20260223 install ok installed coreutils coreutils 9.10-1 install ok installed cwl-upgrader cwl-upgrader 1.2.14-1 install ok installed cwltool cwltool 3.1.20260108082145-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.25 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-7 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-15 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260315-1 install ok installed graphviz graphviz 14.1.2-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed javascript-common javascript-common 12+nmu1 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libamd3:amd64 libamd3 1:7.12.2+dfsg-1 install ok installed libaom3:amd64 libaom3 3.13.1-2 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.16 install ok installed libasan8:amd64 libasan8 16-20260315-1 install ok installed libatomic1:amd64 libatomic1 16-20260315-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libavif16:amd64 libavif16 1.4.0-1 install ok installed libblas3:amd64 libblas3 3.12.1-7+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-4 install ok installed libboost-dev:amd64 libboost-dev 1.90.0.1 install ok installed libboost1.90-dev:amd64 libboost1.90-dev 1.90.0-5+b1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-13 install ok installed libc-dev-bin libc-dev-bin 2.42-13 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-13 install ok installed libc6:amd64 libc6 2.42-13 install ok installed libc6-dev:amd64 libc6-dev 2.42-13 install ok installed libcairo2:amd64 libcairo2 1.18.4-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.1-1 install ok installed libcdt6:amd64 libcdt6 14.1.2-1 install ok installed libcgraph8:amd64 libcgraph8 14.1.2-1 install ok installed libcolamd3:amd64 libcolamd3 1:7.12.2+dfsg-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.19.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-1 install ok installed libdav1d7:amd64 libdav1d7 1.5.3-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libde265-0:amd64 libde265-0 1.0.16-1+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libdeflate0:amd64 libdeflate0 1.23-2+b1 install ok installed libexpat1:amd64 libexpat1 2.7.4-1 install ok installed libffi8:amd64 libffi8 3.5.2-3+b1 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.2+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2 install ok installed libgcc-15-dev:amd64 libgcc-15-dev 15.2.0-15 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260315-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.12.1-2 install ok installed libgd3:amd64 libgd3 2.3.3-13+b1 install ok installed libgfortran5:amd64 libgfortran5 16-20260315-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.87.2-3 install ok installed libglpk40:amd64 libglpk40 5.0-2+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.12-3 install ok installed libgomp1:amd64 libgomp1 16-20260315-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.59-4 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-11+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2 install ok installed libgvc7:amd64 libgvc7 14.1.2-1 install ok installed libgvplugin-gd8:amd64 libgvplugin-gd8 14.1.2-1 install ok installed libgvplugin-pango8:amd64 libgvplugin-pango8 14.1.2-1 install ok installed libgvpr2:amd64 libgvpr2 14.1.2-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.21.2-3 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.21.2-3 install ok installed libheif1:amd64 libheif1 1.21.2-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libhwasan0:amd64 libhwasan0 16-20260315-1 install ok installed libice6:amd64 libice6 2:1.1.1-1+b1 install ok installed libicu78:amd64 libicu78 78.2-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4+b1 install ok installed libimagequant0:amd64 libimagequant0 4.4.1-1+b1 install ok installed libitm1:amd64 libitm1 16-20260315-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-7 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.2+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 10.7.3+dfsg-3 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-2 install ok installed libjs-modernizr libjs-modernizr 3.13.0-0.1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-7 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-3 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b1 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2 install ok installed liblapack3:amd64 liblapack3 3.12.1-7+b1 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5+b1 install ok installed liblsan0:amd64 liblsan0 16-20260315-1 install ok installed libltdl7:amd64 libltdl7 2.5.4-9 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.8-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-8 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-4 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.68.0-2 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.15.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.21.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.21.0-1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.2-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.57.0-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.57.0-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.57.0-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.3+b3 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.3+b3 install ok installed libpathplan4:amd64 libpathplan4 14.1.2-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.55-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9+b1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.12-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.12-1 install ok installed libquadmath0:amd64 libquadmath0 16-20260315-1 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-7 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-3+b1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-10 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b1 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9+b1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1+b1 install ok installed libssl3t64:amd64 libssl3t64 3.6.1-2 install ok installed libstdc++-15-dev:amd64 libstdc++-15-dev 15.2.0-15 install ok installed libstdc++6:amd64 libstdc++6 16-20260315-1 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.12.2+dfsg-1 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 260~rc4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.17+dfsg-1+b1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libthai-data libthai-data 0.1.30-1 install ok installed libthai0:amd64 libthai0 0.1.30-1 install ok installed libtiff6:amd64 libtiff6 4.7.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libtirpc-common libtirpc-common 1.3.6+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.6+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.17-1+b1 install ok installed libtsan2:amd64 libtsan2 16-20260315-1 install ok installed libubsan1:amd64 libubsan1 16-20260315-1 install ok installed libudev1:amd64 libudev1 260~rc4-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.41.3-4 install ok installed libuv1t64:amd64 libuv1t64 1.51.0-2+b1 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2 install ok installed libxdot4:amd64 libxdot4 14.1.2-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2-16:amd64 libxml2-16 2.15.1+dfsg-2+b1 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b4 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.43-0.3 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0.1922.20260106-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed linux-libc-dev linux-libc-dev 6.19.8-1 install ok installed login login 1:4.16.0-2+really2.41.3-4 install ok installed login.defs login.defs 1:4.19.3-1 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.41.3-4 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed netbase netbase 6.5 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5.1 install ok installed openssl openssl 3.6.1-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.1-2 install ok installed pandoc pandoc 3.9-1 install ok installed pandoc-data pandoc-data 3.9-1 install ok installed passwd passwd 1:4.19.3-1 install ok installed perl-base perl-base 5.40.1-7 install ok installed procps procps 2:4.0.4-9+b1 install ok installed python3 python3 3.13.9-3 install ok installed python3-arcp python3-arcp 0.2.1-7 install ok installed python3-argcomplete python3-argcomplete 3.6.3-1 install ok installed python3-cachecontrol python3-cachecontrol 0.14.3-1 install ok installed python3-certifi python3-certifi 2026.2.25+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.4-2 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-1 install ok installed python3-cwl-utils python3-cwl-utils 0.40-1 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-filelock python3-filelock 3.25.0-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-6 install ok installed python3-idna python3-idna 3.11-1 install ok installed python3-linkify-it python3-linkify-it 2.1.0-1 install ok installed python3-lxml:amd64 python3-lxml 6.0.2-1+b3 install ok installed python3-markdown-it python3-markdown-it 3.0.0-3 install ok installed python3-mdurl python3-mdurl 0.1.2-1 install ok installed python3-minimal python3-minimal 3.13.9-3 install ok installed python3-mistune python3-mistune 3.1.4-1 install ok installed python3-msgpack python3-msgpack 1.1.2-2 install ok installed python3-mypy-extensions python3-mypy-extensions 1.1.0-1 install ok installed python3-networkx python3-networkx 3.4.2-4 install ok installed python3-packaging python3-packaging 26.0-1 install ok installed python3-prov python3-prov 2.1.1-1 install ok installed python3-psutil python3-psutil 7.1.0-1 install ok installed python3-pydot python3-pydot 4.0.1-1 install ok installed python3-pygments python3-pygments 2.19.2+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.3.2-2 install ok installed python3-rdflib python3-rdflib 7.4.0-1 install ok installed python3-requests python3-requests 2.32.5+dfsg-1 install ok installed python3-rich python3-rich 13.9.4-2 install ok installed python3-rich-argparse python3-rich-argparse 1.6.0-2 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.18.10+ds-1 install ok installed python3-ruamel.yaml.clib python3-ruamel.yaml.clib 0.2.15+ds-1 install ok installed python3-schema-salad python3-schema-salad 8.9.20251102115403-1 install ok installed python3-spython python3-spython 0.3.13-2 install ok installed python3-typing-extensions python3-typing-extensions 4.15.0-2 install ok installed python3-uc-micro python3-uc-micro 2.0.0-1 install ok installed python3-urllib3 python3-urllib3 2.6.3-1 install ok installed python3.13 python3.13 3.13.12-1 install ok installed python3.13-minimal python3.13-minimal 3.13.12-1 install ok installed r-base-core r-base-core 4.5.3-1 install ok installed r-bioc-basilisk r-bioc-basilisk 1.18.0+ds-3 install ok installed r-bioc-basilisk.utils r-bioc-basilisk.utils 1.18.0+ds-3 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.52.0-3 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.40.0-3 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.14.0+ds-3 install ok installed r-bioc-rcwl r-bioc-rcwl 1.22.0+ds-3 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.44.0+dfsg-3 install ok installed r-cran-backports r-cran-backports 1.5.0-3+b1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-6-1 install ok installed r-cran-base64url r-cran-base64url 1.4-3 install ok installed r-cran-batchtools r-cran-batchtools 0.9.18+dfsg-1 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bit r-cran-bit 4.6.0+dfsg-2 install ok installed r-cran-bit64 r-cran-bit64 4.6.0-1-5 install ok installed r-cran-brew r-cran-brew 1.0-10-2 install ok installed r-cran-bslib r-cran-bslib 0.9.0+dfsg-4 install ok installed r-cran-cachem r-cran-cachem 1.1.0-2 install ok installed r-cran-checkmate r-cran-checkmate 2.3.4-1 install ok installed r-cran-cli r-cran-cli 3.6.5-1 install ok installed r-cran-clipr r-cran-clipr 0.8.0-2 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-commonmark r-cran-commonmark 2.0.0-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.3-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-2 install ok installed r-cran-data.table r-cran-data.table 1.18.2.1+dfsg-2 install ok installed r-cran-diagrammer r-cran-diagrammer 1.0.11+ds-3 install ok installed r-cran-digest r-cran-digest 0.6.39-1 install ok installed r-cran-dplyr r-cran-dplyr 1.2.0-1 install ok installed r-cran-evaluate r-cran-evaluate 1.0.5-1 install ok installed r-cran-farver r-cran-farver 2.1.2-2 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-2 install ok installed r-cran-filelock r-cran-filelock 1.0.3-2 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.3-2 install ok installed r-cran-formatr r-cran-formatr 1.14-3 install ok installed r-cran-fs r-cran-fs 1.6.7+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-4 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-glue r-cran-glue 1.8.0-2 install ok installed r-cran-here r-cran-here 1.0.2-1 install ok installed r-cran-highr r-cran-highr 0.12+dfsg-1 install ok installed r-cran-hms r-cran-hms 1.1.4-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.9-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-2 install ok installed r-cran-httpuv r-cran-httpuv 1.6.16+dfsg-1 install ok installed r-cran-igraph r-cran-igraph 2.2.2-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-5 install ok installed r-cran-jsonlite r-cran-jsonlite 2.0.0+dfsg-1 install ok installed r-cran-knitr r-cran-knitr 1.51+dfsg-2 install ok installed r-cran-labeling r-cran-labeling 0.4.3-2 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-3 install ok installed r-cran-later r-cran-later 1.4.7+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.22-9-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.22-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.4-1 install ok installed r-cran-matrix r-cran-matrix 1.7-4-1+b1 install ok installed r-cran-memoise r-cran-memoise 2.0.1-2 install ok installed r-cran-mime r-cran-mime 0.13-1 install ok installed r-cran-pillar r-cran-pillar 1.11.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-png r-cran-png 0.1-8-2 install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-2 install ok installed r-cran-progress r-cran-progress 1.2.3-2 install ok installed r-cran-promises r-cran-promises 1.3.2+dfsg-2 install ok installed r-cran-purrr r-cran-purrr 1.2.1-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.8.2-2 install ok installed r-cran-r.oo r-cran-r.oo 1.27.1-1 install ok installed r-cran-r.utils r-cran-r.utils 2.13.0-2 install ok installed r-cran-r6 r-cran-r6 2.6.1-2 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.4-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-2 install ok installed r-cran-rcpp r-cran-rcpp 1.1.1-2 install ok installed r-cran-rcpptoml r-cran-rcpptoml 0.2.3+dfsg-2 install ok installed r-cran-readr r-cran-readr 2.2.0-1 install ok installed r-cran-reticulate r-cran-reticulate 1.41.0.1+dfsg-2 install ok installed r-cran-rlang r-cran-rlang 1.1.7-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.30+dfsg-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.1.1-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.18.0-1 install ok installed r-cran-sass r-cran-sass 0.4.10+dfsg-1 install ok installed r-cran-scales r-cran-scales 1.4.0-1 install ok installed r-cran-shiny r-cran-shiny 1.10.0+dfsg-3 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-1-2 install ok installed r-cran-stringi r-cran-stringi 1.8.7-1+b1 install ok installed r-cran-stringr r-cran-stringr 1.6.0-1 install ok installed r-cran-tibble r-cran-tibble 3.3.1+dfsg-1 install ok installed r-cran-tidyr r-cran-tidyr 1.3.2-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-2 install ok installed r-cran-tinytex r-cran-tinytex 0.58-1 install ok installed r-cran-tzdb r-cran-tzdb 0.5.0-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.6-1 install ok installed r-cran-vctrs r-cran-vctrs 0.7.1-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.3-1 install ok installed r-cran-visnetwork r-cran-visnetwork 2.1.4+ds-1 install ok installed r-cran-vroom r-cran-vroom 1.7.0-1 install ok installed r-cran-withr r-cran-withr 3.0.2+dfsg-2 install ok installed r-cran-xfun r-cran-xfun 0.56+dfsg-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-8-1 install ok installed r-cran-yaml r-cran-yaml 2.3.10-1 install ok installed readline-common readline-common 8.3-4 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-5 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026a-1 install ok installed ucf ucf 3.0053 install ok installed unzip unzip 6.0-29 install ok installed util-linux util-linux 2.41.3-4 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed zip zip 3.0-15 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-3 1m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'graphviz', 'javascript-common', 'libabsl20240722:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-rcwl'] 1m34.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-15-base graphviz javascript-common libabsl20240722 libamd3 libaom3 libasan8 libatomic1 libavif16 libblas3 libboost-dev libboost1.90-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcdt6 libcgraph8 libcolamd3 libcom-err2 libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgcrypt20 libgd3 libgfortran5 libglib2.0-0t64 libglpk40 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu78 libidn2-0 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnuma1 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsqlite3-0 libssh2-1t64 libstdc++-15-dev libsuitesparseconfig7 libsvtav1enc2 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev media-types netbase node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.13 python3.13-minimal r-base-core r-bioc-basilisk r-bioc-basilisk.utils r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-rcwl r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml readline-common rpcsvc-proto unzip x11-common xdg-utils zip 0 upgraded, 0 newly installed, 316 to remove and 0 not upgraded. After this operation, 1051 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56246 files and directories currently installed.) Removing r-bioc-rcwl (1.22.0+ds-3) ... Removing cwltool (3.1.20260108082145-1) ... Removing python3-cwl-utils (0.40-1) ... Removing r-bioc-basilisk (1.18.0+ds-3) ... Removing r-cran-reticulate (1.41.0.1+dfsg-2) ... Removing r-bioc-biocparallel (1.40.0-3) ... Removing r-cran-snow (1:0.4.4-2) ... Removing cwl-upgrader (1.2.14-1) ... Removing python3-prov (2.1.1-1) ... Removing python3-pydot (4.0.1-1) ... Removing graphviz (14.1.2-1) ... Removing libgvplugin-pango8:amd64 (14.1.2-1) ... Removing libgvplugin-gd8:amd64 (14.1.2-1) ... Removing libgd3:amd64 (2.3.3-13+b1) ... Removing r-cran-diagrammer (1.0.11+ds-3) ... Removing r-cran-visnetwork (2.1.4+ds-1) ... Removing r-cran-htmlwidgets (1.6.4+dfsg-2) ... Removing r-cran-rmarkdown (2.30+dfsg-1) ... Removing r-cran-shiny (1.10.0+dfsg-3) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing r-cran-knitr (1.51+dfsg-2) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.90.0.1) ... Removing libboost1.90-dev:amd64 (1.90.0-5+b1) ... Removing libstdc++-15-dev:amd64 (15.2.0-15) ... Removing libgcc-15-dev:amd64 (15.2.0-15) ... Removing gcc-15-base:amd64 (15.2.0-15) ... Removing r-cran-bslib (0.9.0+dfsg-4) ... Removing libjs-bootstrap4 (4.6.2+dfsg-2) ... Removing libjs-popper.js (1.16.1+ds-7) ... Removing javascript-common (12+nmu1) ... Removing libavif16:amd64 (1.4.0-1) ... Removing libgav1-2:amd64 (0.20.0-2) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing r-cran-igraph (2.2.2-1) ... Removing libglpk40:amd64 (5.0-2+b1) ... Removing libamd3:amd64 (1:7.12.2+dfsg-1) ... Removing libaom3:amd64 (3.13.1-2) ... Removing libasan8:amd64 (16-20260315-1) ... Removing libc6-dev:amd64 (2.42-13) ... Removing libc-dev-bin (2.42-13) ... Removing libgvpr2:amd64 (14.1.2-1) ... Removing libgvc7:amd64 (14.1.2-1) ... Removing libcgraph8:amd64 (14.1.2-1) ... Removing libcolamd3:amd64 (1:7.12.2+dfsg-1) ... Removing python3-rich-argparse (1.6.0-2) ... Removing python3-rich (13.9.4-2) ... Removing python3-markdown-it (3.0.0-3) ... Removing python3-linkify-it (2.1.0-1) ... Removing python3-uc-micro (2.0.0-1) ... Removing python3-coloredlogs (15.0.1-1) ... Removing python3-humanfriendly (10.0-6) ... Removing python3-psutil (7.1.0-1) ... Removing pandoc (3.9-1) ... Removing python3-lxml:amd64 (6.0.2-1+b3) ... Removing libxslt1.1:amd64 (1.1.43-0.3) ... Removing libgcrypt20:amd64 (1.12.1-2) ... Removing libsuitesparseconfig7:amd64 (1:7.12.2+dfsg-1) ... Removing r-cran-batchtools (0.9.18+dfsg-1) ... Removing r-cran-data.table (1.18.2.1+dfsg-2) ... Removing libgpg-error0:amd64 (1.59-4) ... Removing libhwasan0:amd64 (16-20260315-1) ... Removing r-cran-tidyr (1.3.2-1) ... Removing r-cran-stringr (1.6.0-1) ... Removing r-cran-stringi (1.8.7-1+b1) ... Removing libimagequant0:amd64 (4.4.1-1+b1) ... Removing libitm1:amd64 (16-20260315-1) ... Removing libyuv0:amd64 (0.0.1922.20260106-1) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing r-cran-highr (0.12+dfsg-1) ... Removing libjs-highlight.js (10.7.3+dfsg-3) ... Removing r-cran-jquerylib (0.1.4+dfsg-5) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-2) ... Removing libjs-modernizr (3.13.0-0.1) ... Removing libjs-prettify (2015.12.04+dfsg-3) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing liblsan0:amd64 (16-20260315-1) ... Removing libltdl7:amd64 (2.5.4-9) ... Removing liblua5.4-0:amd64 (5.4.8-1+b1) ... Removing libnuma1:amd64 (2.0.19-1+b1) ... Removing libpathplan4:amd64 (14.1.2-1) ... Removing r-cran-png (0.1-8-2) ... Removing libquadmath0:amd64 (16-20260315-1) ... Removing librav1e0.8:amd64 (0.8.1-7) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libtsan2:amd64 (16-20260315-1) ... Removing libubsan1:amd64 (16-20260315-1) ... Removing r-cran-httpuv (1.6.16+dfsg-1) ... Removing r-cran-sass (0.4.10+dfsg-1) ... Removing r-cran-fs (1.6.7+dfsg-1) ... Removing libuv1t64:amd64 (1.51.0-2+b1) ... Removing libxdot4:amd64 (14.1.2-1) ... Removing libxml2-16:amd64 (2.15.1+dfsg-2+b1) ... Removing libxpm4:amd64 (1:3.5.17-1+b4) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing linux-libc-dev (6.19.8-1) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5.1) ... Removing pandoc-data (3.9-1) ... Removing python3-arcp (0.2.1-7) ... Removing python3-argcomplete (3.6.3-1) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-mdurl (0.1.2-1) ... Removing python3-networkx (3.4.2-4) ... Removing python3-packaging (26.0-1) ... Removing python3-pygments (2.19.2+dfsg-1) ... Removing python3-spython (0.3.13-2) ... Removing python3-typing-extensions (4.15.0-2) ... Removing r-bioc-basilisk.utils (1.18.0+ds-3) ... Removing r-bioc-s4vectors (0.44.0+dfsg-3) ... Removing r-bioc-dir.expiry (1.14.0+ds-3) ... Removing r-bioc-biocgenerics (0.52.0-3) ... Removing r-cran-checkmate (2.3.4-1) ... Removing r-cran-base64url (1.4-3) ... Removing r-cran-backports (1.5.0-3+b1) ... Removing r-cran-fontawesome (0.5.3-2) ... Removing r-cran-htmltools (0.5.9-1) ... Removing r-cran-base64enc (0.1-6-1) ... Removing r-cran-readr (2.2.0-1) ... Removing r-cran-vroom (1.7.0-1) ... Removing r-cran-bit64 (4.6.0-1-5) ... Removing r-cran-bit (4.6.0+dfsg-2) ... Removing r-cran-brew (1.0-10-2) ... Removing r-cran-memoise (2.0.1-2) ... Removing r-cran-cachem (1.1.0-2) ... Removing r-cran-dplyr (1.2.0-1) ... Removing r-cran-tidyselect (1.2.1+dfsg-2) ... Removing r-cran-tibble (3.3.1+dfsg-1) ... Removing r-cran-scales (1.4.0-1) ... Removing r-cran-clipr (0.8.0-2) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-commonmark (2.0.0-1) ... Removing r-cran-tzdb (0.5.0-1) ... Removing r-cran-cpp11 (0.5.3-1) ... Removing r-cran-progress (1.2.3-2) ... Removing r-cran-crayon (1.5.3-2) ... Removing r-cran-digest (0.6.39-1) ... Removing r-cran-evaluate (1.0.5-1) ... Removing r-cran-farver (2.1.2-2) ... Removing r-cran-promises (1.3.2+dfsg-2) ... Removing r-cran-fastmap (1.2.0-2) ... Removing r-cran-filelock (1.0.3-2) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-3) ... Removing r-cran-formatr (1.14-3) ... Removing r-cran-futile.options (1.0.1-4) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-pillar (1.11.1+dfsg-1) ... Removing r-cran-here (1.0.2-1) ... Removing r-cran-hms (1.1.4-1) ... Removing r-cran-jsonlite (2.0.0+dfsg-1) ... Removing r-cran-labeling (0.4.3-2) ... Removing r-cran-later (1.4.7+dfsg-1) ... Removing r-cran-purrr (1.2.1-1) ... Removing r-cran-rcpptoml (0.2.3+dfsg-2) ... Removing r-cran-rcpp (1.1.1-2) ... Removing r-cran-littler (0.3.22-1) ... Removing r-cran-magrittr (2.0.4-1) ... Removing r-cran-mime (0.13-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-prettyunits (1.2.0-2) ... Removing r-cran-r.utils (2.13.0-2) ... Removing r-cran-r.oo (1.27.1-1) ... Removing r-cran-r.methodss3 (1.8.2-2) ... Removing r-cran-r6 (2.6.1-2) ... Removing r-cran-rappdirs (0.3.4-1) ... Removing r-cran-rcolorbrewer (1.1-3-2) ... Removing r-cran-rprojroot (2.1.1-1) ... Removing r-cran-rstudioapi (0.18.0-1) ... Removing r-cran-sourcetools (0.1.7-1-2) ... Removing r-cran-tinytex (0.58-1) ... Removing r-cran-utf8 (1.2.6-1) ... Removing r-cran-viridislite (0.4.3-1) ... Removing r-cran-withr (3.0.2+dfsg-2) ... Removing r-cran-xfun (0.56+dfsg-1) ... Removing r-cran-xtable (1:1.8-8-1) ... Removing r-cran-yaml (2.3.10-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing python3-schema-salad (8.9.20251102115403-1) ... Removing python3-cachecontrol (0.14.3-1) ... Removing python3-requests (2.32.5+dfsg-1) ... Removing r-cran-matrix (1.7-4-1+b1) ... Removing libjs-bootstrap (3.4.1+dfsg-7) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Removing libcdt6:amd64 (14.1.2-1) ... Removing python3-ruamel.yaml (0.18.10+ds-1) ... Removing python3-ruamel.yaml.clib (0.2.15+ds-1) ... Removing python3-rdflib (7.4.0-1) ... Removing python3-urllib3 (2.6.3-1) ... Removing python3-mistune (3.1.4-1) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing python3-certifi (2026.2.25+ds-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.4-2) ... Removing python3-filelock (3.25.0-1) ... Removing python3-idna (3.11-1) ... Removing python3-msgpack (1.1.2-2) ... Removing python3-mypy-extensions (1.1.0-1) ... Removing python3-pyparsing (3.3.2-2) ... Removing r-cran-vctrs (0.7.1-1) ... Removing r-cran-glue (1.8.0-2) ... Removing r-cran-lattice (0.22-9-1) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-rlang (1.1.7-1) ... Removing python3 (3.13.9-3) ... Removing python3.13 (3.13.12-1) ... Removing python3-minimal (3.13.9-3) ... Removing python3.13-minimal (3.13.12-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3) ... Removing libpython3.13-stdlib:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libpython3.13-minimal:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libsqlite3-0:amd64 (3.46.1-9+b1) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing r-cran-cli (3.6.5-1) ... Removing r-base-core (4.5.3-1) ... Removing ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.57.0-1) ... Removing libpangoft2-1.0-0:amd64 (1.57.0-1) ... Removing libpango-1.0-0:amd64 (1.57.0-1) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.17-1+b1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.87.2-3) ... Removing libatomic1:amd64 (16-20260315-1) ... Removing liblapack3:amd64 (3.12.1-7+b1) ... Removing libblas3:amd64 (3.12.1-7+b1) ... Removing libcairo2:amd64 (1.18.4-3) ... Removing libtirpc3t64:amd64 (1.3.6+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcurl4t64:amd64 (8.19.0-1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-2) ... Removing libkrb5-3:amd64 (1.22.1-2) ... Removing libcom-err2:amd64 (1.47.4-1) ... Removing libthai0:amd64 (0.1.30-1) ... Removing libdatrie1:amd64 (0.2.14-1) ... Removing libtiff6:amd64 (4.7.1-1) ... Removing libdeflate0:amd64 (1.23-2+b1) ... Removing libfribidi0:amd64 (1.0.16-5) ... Removing libgfortran5:amd64 (16-20260315-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ... Removing libgnutls30t64:amd64 (3.8.12-3) ... Removing libgomp1:amd64 (16-20260315-1) ... Removing libgraphite2-3:amd64 (1.3.14-11+b1) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b1) ... Removing libsm6:amd64 (2:1.2.6-1+b1) ... Removing libice6:amd64 (2:1.1.1-1+b1) ... Removing libicu78:amd64 (78.2-2) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b2) ... Removing libidn2-0:amd64 (2.3.8-4+b1) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libk5crypto3:amd64 (1.22.1-2) ... Removing libkeyutils1:amd64 (1.6.3-6+b1) ... Removing libkrb5support0:amd64 (1.22.1-2) ... Removing libldap2:amd64 (2.6.10+dfsg-1+b1) ... Removing liblerc4:amd64 (4.0.0+ds-5+b1) ... Removing libnghttp2-14:amd64 (1.68.0-2) ... Removing libnghttp3-9:amd64 (1.15.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.21.0-1) ... Removing libngtcp2-16:amd64 (1.21.0-1) ... Removing libp11-kit0:amd64 (0.26.2-2) ... Removing libpaper-utils (2.2.5-0.3+b3) ... Removing libpaper2:amd64 (2.2.5-0.3+b3) ... Removing libpixman-1-0:amd64 (0.46.4-1+b1) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Removing libwebp7:amd64 (1.5.0-0.1+b1) ... Removing libssh2-1t64:amd64 (1.11.1-1+b1) ... Removing libtasn1-6:amd64 (4.21.0-2) ... Removing libtcl8.6:amd64 (8.6.17+dfsg-1+b1) ... Removing libthai-data (0.1.30-1) ... Removing libtirpc-common (1.3.6+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing openssl (3.6.1-2) ... Removing readline-common (8.3-4) ... Removing unzip (6.0-29) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-15) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libfreetype6:amd64 (2.14.2+dfsg-1) ... Removing libexpat1:amd64 (2.7.4-1) ... Removing libffi8:amd64 (3.5.2-3+b1) ... Removing libpng16-16t64:amd64 (1.6.55-1) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b1) ... Removing libxdmcp6:amd64 (1:1.1.5-2) ... Removing libheif1:amd64 (1.21.2-3) ... Removing libheif-plugin-libde265:amd64 (1.21.2-3) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing libde265-0:amd64 (1.0.16-1+b1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b1) ... Removing libheif-plugin-dav1d:amd64 (1.21.2-3) ... Removing libdav1d7:amd64 (1.5.3-1+b1) ... Processing triggers for libc-bin (2.42-13) ... 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'graphviz', 'javascript-common', 'libabsl20240722:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'r-bioc-rcwl'] 1m34.0s INFO: Running scripts post_remove 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_remove_cleanup'] 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_remove_cleanup'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_remove_exceptions'] 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_remove_exceptions'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'graphviz', 'javascript-common', 'libabsl20240722:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m34.5s DUMP: (Reading database ... 5500 files and directories currently installed.) Purging configuration files for ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cwl-upgrader which is not installed dpkg: warning: ignoring request to remove cwltool which is not installed Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which is not installed dpkg: warning: ignoring request to remove fonts-mathjax which is not installed dpkg: warning: ignoring request to remove gcc-15-base which is not installed Purging configuration files for graphviz (14.1.2-1) ... 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Purging configuration files for r-base-core (4.5.3-1) ... dpkg: warning: ignoring request to remove r-bioc-basilisk which is not installed dpkg: warning: ignoring request to remove r-bioc-basilisk.utils which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which is not installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which is not installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which is not installed dpkg: warning: ignoring request to remove r-cran-backports which is not installed dpkg: warning: ignoring request to remove r-cran-base64enc which is not installed dpkg: warning: ignoring request to remove r-cran-base64url which is not installed dpkg: warning: ignoring request to remove r-cran-batchtools which is not installed dpkg: warning: ignoring request to remove r-cran-bh which is not installed dpkg: warning: ignoring request to 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warning: ignoring request to remove r-cran-diagrammer which is not installed dpkg: warning: ignoring request to remove r-cran-digest which is not installed dpkg: warning: ignoring request to remove r-cran-dplyr which is not installed dpkg: warning: ignoring request to remove r-cran-evaluate which is not installed dpkg: warning: ignoring request to remove r-cran-farver which is not installed dpkg: warning: ignoring request to remove r-cran-fastmap which is not installed dpkg: warning: ignoring request to remove r-cran-filelock which is not installed dpkg: warning: ignoring request to remove r-cran-fontawesome which is not installed dpkg: warning: ignoring request to remove r-cran-formatr which is not installed dpkg: warning: ignoring request to remove r-cran-fs which is not installed dpkg: warning: ignoring request to remove r-cran-futile.logger which is not installed dpkg: warning: ignoring request to remove r-cran-futile.options which is not installed dpkg: warning: ignoring request 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request to remove r-cran-png which is not installed dpkg: warning: ignoring request to remove r-cran-prettyunits which is not installed dpkg: warning: ignoring request to remove r-cran-progress which is not installed dpkg: warning: ignoring request to remove r-cran-promises which is not installed dpkg: warning: ignoring request to remove r-cran-purrr which is not installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which is not installed dpkg: warning: ignoring request to remove r-cran-r.oo which is not installed dpkg: warning: ignoring request to remove r-cran-r.utils which is not installed dpkg: warning: ignoring request to remove r-cran-r6 which is not installed dpkg: warning: ignoring request to remove r-cran-rappdirs which is not installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which is not installed dpkg: warning: ignoring request to remove r-cran-rcpp which is not installed dpkg: warning: ignoring request to remove r-cran-rcpptoml which is not installed dpkg: warning: ignoring request to remove r-cran-readr which is not installed dpkg: warning: ignoring request to remove r-cran-reticulate which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which is not installed dpkg: warning: ignoring request to remove r-cran-rprojroot which is not installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which is not installed dpkg: warning: ignoring request to remove r-cran-sass which is not installed dpkg: warning: ignoring request to remove r-cran-scales which is not installed dpkg: warning: ignoring request to remove r-cran-shiny which is not installed dpkg: warning: ignoring request to remove r-cran-snow which is not installed dpkg: warning: ignoring request to remove r-cran-sourcetools which is not installed dpkg: warning: ignoring request to remove r-cran-stringi which is not installed dpkg: warning: ignoring request to remove r-cran-stringr which is not installed dpkg: warning: ignoring request to remove r-cran-tibble which is not installed dpkg: warning: ignoring request to remove r-cran-tidyr which is not installed dpkg: warning: ignoring request to remove r-cran-tidyselect which is not installed dpkg: warning: ignoring request to remove r-cran-tinytex which is not installed dpkg: warning: ignoring request to remove r-cran-tzdb which is not installed dpkg: warning: ignoring request to remove r-cran-utf8 which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-cran-viridislite which is not installed dpkg: warning: ignoring request to remove r-cran-visnetwork which is not installed dpkg: warning: ignoring request to remove r-cran-vroom which is not installed dpkg: warning: ignoring request to remove r-cran-withr which is not installed dpkg: warning: ignoring request to remove r-cran-xfun which is not installed dpkg: warning: ignoring request to remove r-cran-xtable which is not installed dpkg: warning: ignoring request to remove r-cran-yaml which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove rpcsvc-proto which is not installed dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed 1m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', 'ca-certificates', 'cwl-upgrader', 'cwltool', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-15-base:amd64', 'graphviz', 'javascript-common', 'libabsl20240722:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnuma1:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-15-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc2:amd64', 'libtasn1-6:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-basilisk.utils', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'unzip', 'x11-common', 'xdg-utils', 'zip'] 1m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', 'r-bioc-rcwl'] 1m34.5s DUMP: dpkg: warning: ignoring request to remove r-bioc-rcwl which is not installed 1m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', 'r-bioc-rcwl'] 1m34.5s INFO: Running scripts post_purge 1m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_purge_exceptions'] 1m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_purge_exceptions'] 1m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_purge_manual_cleanup'] 1m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_purge_manual_cleanup'] 1m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', '--pending'] 1m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--purge', '--pending'] 1m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--remove', '--pending'] 1m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg', '--remove', '--pending'] 1m34.5s INFO: Running scripts post_test 1m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_test_exceptions'] 1m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'tmp/scripts/post_test_exceptions'] 1m34.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 1m34.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 1m35.2s DEBUG: No broken symlinks as far as we can find. 1m35.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-divert', '--list'] 1m35.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'dpkg-divert', '--list'] 1m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'clean'] 1m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe976ordk', 'apt-get', 'clean'] 1m35.3s DEBUG: Recording chroot state 1m37.2s INFO: PASS: Installation and purging test. 1m37.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/shm'] 1m37.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/shm'] 1m37.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/console'] 1m37.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/console'] 1m37.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/ptmx'] 1m37.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/ptmx'] 1m37.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/pts'] 1m37.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/dev/pts'] 1m37.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/proc'] 1m37.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe976ordk/proc'] 1m37.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 1m37.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe976ordk'] 1m37.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpe976ordk 1m37.8s INFO: PASS: All tests. 1m37.8s INFO: piuparts run ends. ret=0 End: 2026-03-16 09:34:48 GMT