Start: 2026-08-08 21:44:57 GMT Package: r-bioc-rcwl Version: 1.28.0+dfsg-1 Installed-Size: 442 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.23, r-cran-yaml, r-bioc-s4vectors, r-bioc-biocparallel, r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, r-bioc-basilisk, cwltool, r-pkg-team-core-architecture Suggests: r-cran-knitr, r-cran-rmarkdown Description: An R interface to the Common Workflow Language Homepage: https://rcwl.org/Rcwl/ Description-md5: c80c3b900521df7f3155667c906c967e Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.28.0+dfsg-1_all.deb Size: 338900 MD5sum: 83f44a21e82929e20c3bf56bd9902b14 SHA256: 2f7993a00d92ea1a64fcb72f959956e55ac1f72e0fa187fe470a770196711498 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-rcwl=1.28.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-rcwl=1.28.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-52-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.180-1 (2026-08-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpaqecvu60 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpaqecvu60 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpaqecvu60/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpaqecvu60/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'update'] 0m3.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.7 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7702 kB] Fetched 18.6 MB in 2s (9324 kB/s) Reading package lists... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s DUMP: 96dbfb49b0d60ec3b75256b636883e5c - 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s INFO: Running scripts post_setup 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_fake-essential'] 0m6.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... init-system-helpers is already the newest version (1.69). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1879 kB of archives. After this operation, 5273 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.6-3 [69.4 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.6-3 [983 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.26 [599 kB] Preconfiguring packages ... Fetched 1879 kB in 0s (20.8 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.6-3_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.6-3) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.6-3_amd64.deb ... Unpacking procps (2:4.0.6-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.26_all.deb ... Unpacking dbconfig-common (2.0.26) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.6-3) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.6-3) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.0.26) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.42-17) ... 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_fake-essential'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_forbid_home'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'clean'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'clean'] 0m7.0s DEBUG: Recording chroot state 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.4s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.1.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-17 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-17 install ok installed libc6:amd64 libc6 2.42-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.1.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.6-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.1.0-3 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.2-3 install ok installed procps procps 2:4.0.6-3 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.2-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-divert', '--list'] 0m7.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-divert', '--list'] 0m7.4s INFO: Running scripts is_testable 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/is_testable_uninstallable'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/is_testable_uninstallable'] 0m7.5s INFO: apt-cache does not know about any of the requested packages 0m7.5s INFO: Running scripts pre_test 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_test_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_test_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_test_root_password'] 0m7.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_test_root_password'] 0m7.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 0m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 0m8.1s DEBUG: No broken symlinks as far as we can find. 0m8.1s INFO: Running scripts pre_install 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_database-server'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_exceptions'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_extras'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl=1.28.0+dfsg-1'] 0m9.0s DUMP: Package: r-bioc-rcwl Version: 1.28.0+dfsg-1 Installed-Size: 442 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.23, r-cran-yaml, r-bioc-s4vectors, r-bioc-biocparallel, r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, r-bioc-basilisk, cwltool, r-pkg-team-core-architecture Suggests: r-cran-knitr, r-cran-rmarkdown Description-en: An R interface to the Common Workflow Language The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines. Description-md5: c80c3b900521df7f3155667c906c967e Homepage: https://rcwl.org/Rcwl/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rcwl/r-bioc-rcwl_1.28.0+dfsg-1_all.deb Size: 338900 MD5sum: 83f44a21e82929e20c3bf56bd9902b14 SHA256: 2f7993a00d92ea1a64fcb72f959956e55ac1f72e0fa187fe470a770196711498 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-rcwl=1.28.0+dfsg-1'] 0m9.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: r-api-4.0, r-api-bioc-3.23, r-cran-yaml, r-bioc-s4vectors, r-bioc-biocparallel, r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, r-bioc-basilisk, cwltool, r-pkg-team-core-architecture Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m9.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpjomnbpyb/piuparts-depends-dummy'] 0m9.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpjomnbpyb/piuparts-depends-dummy.deb'. 0m9.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpjomnbpyb/piuparts-depends-dummy'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.1s DUMP: 3.3.2 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.1s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpjomnbpyb/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpaqecvu60/tmp 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 1m5.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu curl cwl-upgrader cwltool dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-glyphicons-halflings fonts-mathjax g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15-base gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man graphviz javascript-common libabsl20260526 libamd3 libaom3 libasan8 libatomic1 libavif16 libbinutils libblas3 libboost-dev libboost1.90-dev libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcdt6 libcgraph8 libcolamd3 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl liberror-perl libevent-2.1-7t64 libexpat1 libffi-dev libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgcc-16-dev libgcrypt20 libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu78 libidn2-0 libidn2-dev libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libmpfr6 libncurses-dev libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnspr4 libnspr4-dev libnss3 libnss3-dev libnuma1 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libquadmath0 librav1e0.8 libreadline-dev libreadline8t64 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsqlite3-0 libsqlite3-dev libssh2-1t64 libssl-dev libstdc++-15-dev libstdc++-16-dev libsuitesparseconfig7 libsvtav1enc4 libtasn1-6 libtasn1-6-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxml2-dev libxmlsec1-10310 libxmlsec1-dev libxmlsec1-gnutls10310 libxmlsec1-nss10310 libxmlsec1-openssl10310 libxpm4 libxrender1 libxslt1-dev libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev make media-types netbase nettle-dev node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data patch perl perl-modules-5.42 pyenv pyenv-runtime python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.14 python3.14-minimal r-base-core r-bioc-basilisk r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-otel r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-pkg-team-core-architecture readline-common rpcsvc-proto unzip wget x11-common xdg-utils xz-utils zip zlib1g-dev Suggested packages: binutils-doc gprofng-gui binutils-gold bzip2-doc cpp-doc gcc-16-locales cpp-16-doc podman | docker.io | singularity-container cwltool-doc debian-keyring debian-tag2upload-keyring node-fortawesome-fontawesome-free g++-multilib g++-16-multilib gcc-16-doc gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu gettext-base git-doc git-email git-gui gitk gitweb git-cvs git-svn gsfonts graphviz-doc apache2 | lighttpd | httpd libboost-doc libboost1.90-doc libboost-atomic1.90-dev libboost-chrono1.90-dev libboost-container1.90-dev libboost-context1.90-dev libboost-contract1.90-dev libboost-coroutine1.90-dev libboost-date-time1.90-dev libboost-exception1.90-dev libboost-fiber1.90-dev libboost-filesystem1.90-dev libboost-graph-parallel1.90-dev libboost-graph1.90-dev libboost-iostreams1.90-dev libboost-json1.90-dev libboost-locale1.90-dev libboost-log1.90-dev libboost-math1.90-dev libboost-mpi-python1.90-dev libboost-mpi1.90-dev libboost-nowide1.90-dev libboost-numpy1.90-dev libboost-program-options1.90-dev libboost-python1.90-dev libboost-random1.90-dev libboost-regex1.90-dev libboost-serialization1.90-dev libboost-stacktrace1.90-dev libboost-test1.90-dev libboost-thread1.90-dev libboost-timer1.90-dev libboost-type-erasure1.90-dev libboost-url1.90-dev libboost-wave1.90-dev libboost1.90-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc sq | sqop | rsop | gosop | pgpainless-cli | gpg-sq | gnupg bzr rng-tools libgd-tools gdbm-l10n low-memory-monitor libiodbc2-dev libmariadb-dev-compat gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc p11-kit-doc readline-doc sqlite3-doc libssl-doc libstdc++-15-doc libstdc++-16-doc tcl8.6 tk8.6 pkgconf make-doc nodejs citation-style-language-styles context ghc groff libjs-katex librsvg2-bin pandoc-citeproc php ruby texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-xetex wkhtmltopdf ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libsecret-1-dev python3-doc python3-tk python3-venv python-charset-normalizer-doc cwl-utils python-lxml-doc python-prov-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc singularity-container python-typing-extensions-doc python3-backports.zstd | python3-supported-min python3-brotli python3.14-venv python3.14-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-getopt r-cran-inline r-cran-rmpi r-cran-rlecuyer Recommended packages: bash-completion nodejs python3-galaxy-tool-util fakeroot sq | sqop | rsop | gosop | pgpainless-cli | gpg-sq | gnupg libalgorithm-merge-perl less ssh-client fonts-liberation bzip2-doc manpages manpages-dev libfile-fcntllock-perl liblocale-gettext-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n libheif-plugin-x265 libheif-plugin-aomenc node-jquery krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libtasn1-doc llvm tk-dev python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-matplotlib python3-numpy python3-pygraphviz python3-scipy python3-yaml python3-html5rdf python3-orjson black r-recommended r-base-dev r-doc-html node-highlight.js libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu curl cwl-upgrader cwltool dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-glyphicons-halflings fonts-mathjax g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15-base gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man graphviz javascript-common libabsl20260526 libamd3 libaom3 libasan8 libatomic1 libavif16 libbinutils libblas3 libboost-dev libboost1.90-dev libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcdt6 libcgraph8 libcolamd3 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl liberror-perl libevent-2.1-7t64 libexpat1 libffi-dev libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgcc-16-dev libgcrypt20 libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu78 libidn2-0 libidn2-dev libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libmpfr6 libncurses-dev libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnspr4 libnspr4-dev libnss3 libnss3-dev libnuma1 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libquadmath0 librav1e0.8 libreadline-dev libreadline8t64 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsqlite3-0 libsqlite3-dev libssh2-1t64 libssl-dev libstdc++-15-dev libstdc++-16-dev libsuitesparseconfig7 libsvtav1enc4 libtasn1-6 libtasn1-6-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxml2-dev libxmlsec1-10310 libxmlsec1-dev libxmlsec1-gnutls10310 libxmlsec1-nss10310 libxmlsec1-openssl10310 libxpm4 libxrender1 libxslt1-dev libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev make media-types netbase nettle-dev node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data patch perl perl-modules-5.42 piuparts-depends-dummy pyenv pyenv-runtime python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.14 python3.14-minimal r-base-core r-bioc-basilisk r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-otel r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-pkg-team-core-architecture readline-common rpcsvc-proto unzip wget x11-common xdg-utils xz-utils zip zlib1g-dev 0 upgraded, 395 newly installed, 0 to remove and 0 not upgraded. Need to get 556 MB/556 MB of archives. After this operation, 2146 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [732 B] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.2-1 [121 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.6-1 [896 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.6-1 [2416 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.6-1 [25.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.7.1-2 [30.5 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.6-1 [2278 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.6-1 [846 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.6-1 [8108 B] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.6-1 [25.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:17 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.3-1 [1522 kB] Get:18 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260601 [134 kB] Get:19 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.2-3 [3210 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.2-3 [4245 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.2-3 [265 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.4-1 [471 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.1-1 [61.0 kB] Get:30 http://deb.debian.org/debian sid/main amd64 wget amd64 1.25.0-3 [985 kB] Get:31 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.3-1 [740 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libsframe3 amd64 2.47-2 [84.8 kB] Get:33 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.47-2 [2685 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.47-2 [536 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.47-2 [820 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.47-2 [160 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.47-2 [91.7 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:39 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.47-2 [1072 kB] Get:40 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.47-2 [282 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.42-17 [38.1 kB] Get:42 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 7.1.7-1 [2038 kB] Get:43 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.4-1 [63.4 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.42-17 [1991 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:48 http://deb.debian.org/debian sid/main amd64 cpp-16-x86-64-linux-gnu amd64 16.1.0-3 [76.0 MB] Get:49 http://deb.debian.org/debian sid/main amd64 cpp-16 amd64 16.1.0-3 [1272 B] Get:50 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:51 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:52 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 16.1.0-3 [46.0 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.1.0-3 [151 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16.1.0-3 [27.0 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16.1.0-3 [10.4 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16.1.0-3 [2889 kB] Get:57 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16.1.0-3 [1280 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16.1.0-3 [2573 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16.1.0-3 [1136 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16.1.0-3 [1580 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16.1.0-3 [148 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libgcc-16-dev amd64 16.1.0-3 [2780 kB] Get:63 http://deb.debian.org/debian sid/main amd64 gcc-16-x86-64-linux-gnu amd64 16.1.0-3 [87.1 MB] Get:64 http://deb.debian.org/debian sid/main amd64 gcc-16 amd64 16.1.0-3 [523 kB] Get:65 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:66 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:67 http://deb.debian.org/debian sid/main amd64 libstdc++-16-dev amd64 16.1.0-3 [2749 kB] Get:68 http://deb.debian.org/debian sid/main amd64 g++-16-x86-64-linux-gnu amd64 16.1.0-3 [81.9 MB] Get:69 http://deb.debian.org/debian sid/main amd64 g++-16 amd64 16.1.0-3 [33.0 kB] Get:70 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:71 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:72 http://deb.debian.org/debian sid/main amd64 make amd64 4.4.1-3 [463 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.23.7 [669 kB] Get:74 http://deb.debian.org/debian sid/main amd64 patch amd64 2.8-2 [134 kB] Get:75 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.23.7 [1318 kB] Get:76 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B] Get:77 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:84 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.13+dfsg-1+b1 [189 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-5 [245 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.21.0-2 [422 kB] Get:93 http://deb.debian.org/debian sid/main amd64 curl amd64 8.21.0-2 [283 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml.clib amd64 0.2.15+ds2-2 [134 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-ruamel.yaml all 0.18.14-4 [149 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:98 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.7-2 [247 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.18-1 [41.6 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.7.0-3 [119 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-msgpack amd64 1.1.2-4 [106 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-cachecontrol all 0.14.4-1 [17.4 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.16.0-4 [95.2 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-mistune all 3.1.4-1 [35.7 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-mypy-extensions all 1.1.0-3 [6556 B] Get:108 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:109 http://deb.debian.org/debian sid/main amd64 python3-rdflib all 7.6.0-2 [512 kB] Get:110 http://deb.debian.org/debian sid/main amd64 python3-mdurl all 0.1.2-1 [9444 B] Get:111 http://deb.debian.org/debian sid/main amd64 python3-uc-micro all 2.0.0-1 [6028 B] Get:112 http://deb.debian.org/debian sid/main amd64 python3-linkify-it all 2.1.0-2 [18.7 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 4.2.0-3 [63.7 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-rich all 15.0.0-1 [210 kB] Get:116 http://deb.debian.org/debian sid/main amd64 python3-rich-argparse all 1.8.0-3 [23.2 kB] Get:117 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.32.0-1 [68.0 kB] Get:118 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-7 [163 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-7 [173 kB] Get:120 http://deb.debian.org/debian sid/main amd64 python3-schema-salad amd64 8.9.20260417192335-1 [721 kB] Get:121 http://deb.debian.org/debian sid/main amd64 cwl-upgrader all 1.2.15+ds-1 [16.5 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3-argcomplete all 3.7.0-1 [40.0 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-7 [84.9 kB] Get:124 http://deb.debian.org/debian sid/main amd64 python3-coloredlogs all 15.0.1-2 [47.9 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.2-2 [84.2 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3-cwl-utils all 0.41-2 [3250 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.61-3 [89.2 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.12.2-1 [903 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.45-0.1 [158 kB] Get:131 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 6.1.0-1 [2232 kB] Get:132 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:133 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.4.2-5 [23.9 MB] Get:134 http://deb.debian.org/debian sid/main amd64 libcdt6 amd64 14.1.2-1+b3 [18.3 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libcgraph8 amd64 14.1.2-1+b3 [58.5 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.5.4-11 [416 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libpathplan4 amd64 14.1.2-1+b3 [29.6 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libxdot4 amd64 14.1.2-1+b3 [21.6 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libgvc7 amd64 14.1.2-1+b3 [375 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libgvpr2 amd64 14.1.2-1+b3 [126 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:143 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:144 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:145 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libabsl20260526 amd64 20260526.0-2 [563 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:162 http://deb.debian.org/debian sid/main amd64 librav1e0.8 amd64 0.8.1-11 [966 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libsvtav1enc4 amd64 4.1.0+dfsg-1 [2414 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1949.20260706-1 [177 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libde265-0 amd64 1.1.1-1 [201 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libheif-plugin-libde265 amd64 1.23.1-1 [17.3 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libheif-plugin-dav1d amd64 1.23.1-1 [19.8 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libheif1 amd64 1.23.1-1 [761 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:175 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libxpm4 amd64 1:3.5.19-1 [58.9 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libgd3 amd64 2.3.3-14 [126 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libgvplugin-gd8 amd64 14.1.2-1+b3 [27.0 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.88.3-2 [1536 kB] Get:182 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.58.0-1 [225 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.58.0-1 [53.1 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.58.0-1 [34.2 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libgvplugin-pango8 amd64 14.1.2-1+b3 [31.1 kB] Get:193 http://deb.debian.org/debian sid/main amd64 graphviz amd64 14.1.2-1+b3 [60.3 kB] Get:194 http://deb.debian.org/debian sid/main amd64 python3-pydot all 4.0.1-1 [45.0 kB] Get:195 http://deb.debian.org/debian sid/main amd64 python3-prov all 2.1.1-1 [100 kB] Get:196 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.1.0-1 [224 kB] Get:197 http://deb.debian.org/debian sid/main amd64 python3-spython all 0.3.13-2 [55.2 kB] Get:198 http://deb.debian.org/debian sid/main amd64 python3-arcp all 0.2.1-7 [13.6 kB] Get:199 http://deb.debian.org/debian sid/main amd64 cwltool all 3.2.20260413085819-1 [524 kB] Get:200 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome-legacy all 6-3 [1547 kB] Get:201 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:202 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:203 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.3.0-2 [37.7 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.21.0-2 [416 kB] Get:206 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:207 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.55.0-1 [2381 kB] Get:208 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.55.0-1 [9658 kB] Get:209 http://deb.debian.org/debian sid/main amd64 javascript-common all 12+nmu1 [4864 B] Get:210 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.12.2+dfsg-1 [33.7 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.12.2+dfsg-1 [50.6 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libgcc-15-dev amd64 15.3.0-2 [2717 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libstdc++-15-dev amd64 15.3.0-2 [2784 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libboost1.90-dev amd64 1.90.0-6 [11.3 MB] Get:216 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.90.0.2 [3064 B] Get:217 http://deb.debian.org/debian sid/main amd64 libbz2-dev amd64 1.0.8-6+b2 [33.6 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.12.2+dfsg-1 [42.5 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libevent-2.1-7t64 amd64 2.1.13-stable-1 [183 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libffi-dev amd64 3.7.1-2 [73.4 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.1.0-3 [878 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-3 [392 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b2 [328 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b2 [641 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libunbound8 amd64 1.26.0-1 [661 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libgnutls-dane0t64 amd64 3.8.13-1 [496 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libidn2-dev amd64 2.3.8-5 [102 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libp11-kit-dev amd64 0.26.4-1 [225 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libtasn1-6-dev amd64 4.21.0-2+b1 [98.6 kB] Get:230 http://deb.debian.org/debian sid/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libgnutls28-dev amd64 3.8.13-1 [1479 kB] Get:232 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:234 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:235 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-7 [52.3 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.2+dfsg-2 [519 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libjs-highlight.js all 10.7.3+dfsg-5 [177 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [4008 B] Get:244 http://deb.debian.org/debian sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:245 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.14.2+dfsg-1 [245 kB] Get:246 http://deb.debian.org/debian sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:247 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get:249 http://deb.debian.org/debian sid/main amd64 libjs-prettify all 2015.12.04+dfsg-3 [42.0 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:251 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:252 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.8-2 [148 kB] Get:253 http://deb.debian.org/debian sid/main amd64 liblzma-dev amd64 5.8.3-1 [369 kB] Get:254 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.6+20260608-2 [107 kB] Get:255 http://deb.debian.org/debian sid/main amd64 libncurses-dev amd64 6.6+20260608-2 [356 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.39-1 [110 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libnspr4-dev amd64 2:4.39-1 [206 kB] Get:258 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.126-1 [1429 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libnss3-dev amd64 2:3.126-1 [210 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:261 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libreadline-dev amd64 8.3-4 [163 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libsqlite3-dev amd64 3.53.4-2 [1166 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.6.3-1 [3025 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:271 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:272 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.52.1-4 [158 kB] Get:274 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:275 http://deb.debian.org/debian sid/main amd64 libxml2-dev amd64 2.15.3+dfsg-1 [746 kB] Get:276 http://deb.debian.org/debian sid/main amd64 libxmlsec1-10310 amd64 1.3.10-2 [165 kB] Get:277 http://deb.debian.org/debian sid/main amd64 libxmlsec1-gnutls10310 amd64 1.3.10-2 [89.1 kB] Get:278 http://deb.debian.org/debian sid/main amd64 libxmlsec1-nss10310 amd64 1.3.10-2 [89.1 kB] Get:279 http://deb.debian.org/debian sid/main amd64 libxmlsec1-openssl10310 amd64 1.3.10-2 [111 kB] Get:280 http://deb.debian.org/debian sid/main amd64 libxslt1-dev amd64 1.1.45-0.1 [119 kB] Get:281 http://deb.debian.org/debian sid/main amd64 libxmlsec1-dev amd64 1.3.10-2 [495 kB] Get:282 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:283 http://deb.debian.org/debian sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:284 http://deb.debian.org/debian sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:285 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5.1 [12.4 kB] Get:286 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.10-1 [531 kB] Get:287 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.10-1 [28.8 MB] Get:288 http://deb.debian.org/debian sid/main amd64 pyenv-runtime all 2.7.1-1 [46.6 kB] Get:289 http://deb.debian.org/debian sid/main amd64 pyenv all 2.7.1-1 [388 kB] Get:290 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-16 [239 kB] Get:291 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-30 [173 kB] Get:292 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:293 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.1-3 [28.4 MB] Get:294 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:295 http://deb.debian.org/debian sid/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:296 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.58.1-1 [649 kB] Get:297 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-9-1 [1450 kB] Get:298 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:299 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.23-1 [96.5 kB] Get:300 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:301 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.1.2-1 [2168 kB] Get:302 http://deb.debian.org/debian sid/main amd64 r-cran-rcpptoml amd64 0.2.3+dfsg-3 [117 kB] Get:303 http://deb.debian.org/debian sid/main amd64 r-cran-rprojroot all 2.1.1-3 [134 kB] Get:304 http://deb.debian.org/debian sid/main amd64 r-cran-here all 1.0.2-1 [50.2 kB] Get:305 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-2 [447 kB] Get:306 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-9-1 [42.9 kB] Get:307 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.4-2 [50.4 kB] Get:308 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:309 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.3+dfsg-1 [229 kB] Get:310 http://deb.debian.org/debian sid/main amd64 r-cran-reticulate amd64 1.46.0+dfsg-2 [1622 kB] Get:311 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-2 [27.9 kB] Get:312 http://deb.debian.org/debian sid/main amd64 r-bioc-dir.expiry all 1.20.0+dfsg-1 [32.5 kB] Get:313 http://deb.debian.org/debian sid/main amd64 r-bioc-basilisk amd64 1.24.0+dfsg-1 [108 kB] Get:314 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-3 [152 kB] Get:315 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-3 [119 kB] Get:316 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-4 [20.6 kB] Get:317 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.9-2 [121 kB] Get:318 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:319 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:320 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.90.0-1 [6220 B] Get:321 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.5-1 [236 kB] Get:322 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.46.0-1 [971 kB] Get:323 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.50.1+dfsg-1 [1849 kB] Get:324 http://deb.debian.org/debian sid/main amd64 r-cran-backports amd64 1.5.1-2 [122 kB] Get:325 http://deb.debian.org/debian sid/main amd64 r-cran-base64enc amd64 0.1-6-2 [30.7 kB] Get:326 http://deb.debian.org/debian sid/main amd64 r-cran-base64url amd64 1.4-3 [26.8 kB] Get:327 http://deb.debian.org/debian sid/main amd64 r-cran-brew all 1.0-10-2 [70.6 kB] Get:328 http://deb.debian.org/debian sid/main amd64 r-cran-checkmate amd64 2.3.4-1 [728 kB] Get:329 http://deb.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.18.4+dfsg-1 [2332 kB] Get:330 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.39-1 [212 kB] Get:331 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 2.1.0+dfsg-1 [259 kB] Get:332 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-2 [164 kB] Get:333 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:334 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:335 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-3 [21.7 kB] Get:336 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:337 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Get:338 http://deb.debian.org/debian sid/main amd64 r-cran-hms all 1.1.4-1 [110 kB] Get:339 http://deb.debian.org/debian sid/main amd64 r-cran-prettyunits all 1.2.0-2 [160 kB] Get:340 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:341 http://deb.debian.org/debian sid/main amd64 r-cran-progress all 1.2.3-2 [94.6 kB] Get:342 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.7-2 [895 kB] Get:343 http://deb.debian.org/debian sid/main amd64 r-cran-batchtools amd64 0.9.18+dfsg-1 [719 kB] Get:344 http://deb.debian.org/debian sid/main amd64 r-cran-bit amd64 4.6.0+dfsg-3 [452 kB] Get:345 http://deb.debian.org/debian sid/main amd64 r-cran-bit64 amd64 4.8.2-1 [585 kB] Get:346 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-3 [79.8 kB] Get:347 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-3 [79.6 kB] Get:348 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.9-2 [377 kB] Get:349 http://deb.debian.org/debian sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-6 [14.1 kB] Get:350 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:351 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.13-2 [47.5 kB] Get:352 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.10+dfsg-3 [1023 kB] Get:353 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.10.0+dfsg-1 [5074 kB] Get:354 http://deb.debian.org/debian sid/main amd64 r-cran-clipr all 0.8.1-1 [57.3 kB] Get:355 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 2.0.0-2 [123 kB] Get:356 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.5-1 [209 kB] Get:357 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.6-2 [138 kB] Get:358 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.11.1+dfsg-1 [457 kB] Get:359 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.3.1+dfsg-2 [452 kB] Get:360 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-3 [224 kB] Get:361 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.2.1-2 [1574 kB] Get:362 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 1.0.5-3 [118 kB] Get:363 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.60+dfsg-1 [672 kB] Get:364 http://deb.debian.org/debian sid/main amd64 r-cran-highr all 0.12+dfsg-1 [38.3 kB] Get:365 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.12-2 [120 kB] Get:366 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.51+dfsg-2 [847 kB] Get:367 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.3-2 [1311 kB] Get:368 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.60-1 [155 kB] Get:369 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.4.8+dfsg-3 [145 kB] Get:370 http://deb.debian.org/debian sid/main amd64 r-cran-otel all 0.2.0-1 [293 kB] Get:371 http://deb.debian.org/debian sid/main amd64 r-cran-promises all 1.5.0+dfsg-2 [302 kB] Get:372 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.16+dfsg-1 [513 kB] Get:373 http://deb.debian.org/debian sid/main amd64 r-cran-sourcetools amd64 0.1.7-2-2 [46.6 kB] Get:374 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-8-1 [737 kB] Get:375 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.13.0+dfsg-1 [3057 kB] Get:376 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.31+dfsg-1 [1472 kB] Get:377 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-2 [124 kB] Get:378 http://deb.debian.org/debian sid/main amd64 r-cran-igraph amd64 2.3.3-1 [5807 kB] Get:379 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.2.2-1 [575 kB] Get:380 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-2 [54.0 kB] Get:381 http://deb.debian.org/debian sid/main amd64 r-cran-tzdb amd64 0.5.0-1 [515 kB] Get:382 http://deb.debian.org/debian sid/main amd64 r-cran-vroom amd64 1.7.1-1 [905 kB] Get:383 http://deb.debian.org/debian sid/main amd64 r-cran-readr amd64 2.2.0-1 [779 kB] Get:384 http://deb.debian.org/debian sid/main amd64 r-cran-rstudioapi all 0.19.0-1 [345 kB] Get:385 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-3 [1414 kB] Get:386 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-2 [63.2 kB] Get:387 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.3-1 [1299 kB] Get:388 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.4.0-1 [800 kB] Get:389 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.6.0-1 [323 kB] Get:390 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.2-3 [1163 kB] Get:391 http://deb.debian.org/debian sid/main amd64 r-cran-visnetwork all 2.1.4+ds-1 [2984 kB] Get:392 http://deb.debian.org/debian sid/main amd64 r-cran-diagrammer all 1.0.12+ds-1 [1495 kB] Get:393 http://deb.debian.org/debian sid/main amd64 r-cran-r.methodss3 all 1.8.2-2 [86.0 kB] Get:394 http://deb.debian.org/debian sid/main amd64 r-cran-r.oo all 1.27.1-1 [982 kB] Get:395 http://deb.debian.org/debian sid/main amd64 r-cran-r.utils all 2.13.0-2 [1434 kB] Preconfiguring packages ... Fetched 556 MB in 4s (136 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5517 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.2-1) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../libpython3.14-minimal_3.14.6-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.6-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../7-libpython3.14-stdlib_3.14.6-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.6-1) ... Selecting previously unselected package python3.14. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.7+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../255-libxft2_2.3.6-1+b5_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b5) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../256-libxss1_1%3a1.2.3-1+b4_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b4) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../257-libtk8.6_8.6.18-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.18-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../258-libuv1t64_1.52.1-4_amd64.deb ... Unpacking libuv1t64:amd64 (1.52.1-4) ... 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Setting up python3-ruamel.yaml.clib (0.2.15+ds2-2) ... Setting up r-cran-highr (0.12+dfsg-1) ... Setting up r-cran-prettyunits (1.2.0-2) ... Setting up r-cran-checkmate (2.3.4-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-data.table (1.18.4+dfsg-1) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-bit (4.6.0+dfsg-3) ... Setting up r-cran-xtable (1:1.8-8-1) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-rprojroot (2.1.1-3) ... Setting up r-cran-bit64 (4.8.2-1) ... Setting up gcc (4:16.1.0-3) ... Setting up r-cran-fastmap (1.2.0-3) ... Setting up r-cran-png (0.1-9-1) ... Setting up r-cran-r.methodss3 (1.8.2-2) ... Setting up r-cran-jsonlite (2.0.0+dfsg-2) ... Setting up r-cran-rstudioapi (0.19.0-1) ... Setting up r-cran-pkgconfig (2.0.3-3) ... Setting up r-cran-utf8 (1.2.6-2) ... Setting up r-cran-brew (1.0-10-2) ... Setting up r-cran-stringi (1.8.7-2) ... Setting up r-cran-cpp11 (0.5.5-1) ... Setting up r-cran-rcolorbrewer (1.1-3-2) ... Setting up r-cran-futile.logger (1.4.9-2) ... Setting up python3-requests (2.34.2-1) ... Setting up r-cran-scales (1.4.0-1) ... Setting up r-cran-later (1.4.8+dfsg-3) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up r-cran-here (1.0.2-1) ... Setting up r-cran-htmltools (0.5.9-2) ... Setting up r-cran-tinytex (0.60-1) ... Setting up python3-markdown-it (4.2.0-3) ... Setting up r-cran-knitr (1.51+dfsg-2) ... Setting up python3-ruamel.yaml (0.18.14-4) ... Setting up r-cran-rcpptoml (0.2.3+dfsg-3) ... Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libxmlsec1-dev (1.3.10-2) ... Setting up r-cran-cachem (1.1.0-3) ... Setting up build-essential (12.12) ... Setting up python3-cachecontrol (0.14.4-1) ... Setting up r-cran-tzdb (0.5.0-1) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up r-cran-pillar (1.11.1+dfsg-1) ... Setting up r-cran-base64url (1.4-3) ... Setting up r-bioc-biocgenerics (0.58.1-1) ... Setting up r-cran-stringr (1.6.0-1) ... Setting up r-bioc-biocparallel (1.46.0-1) ... Setting up python3-rich (15.0.0-1) ... Setting up r-cran-tibble (3.3.1+dfsg-2) ... Setting up r-cran-fontawesome (0.5.3-2) ... Setting up r-cran-igraph (2.3.3-1) ... Setting up r-cran-r.oo (1.27.1-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-6) ... Setting up r-cran-tidyselect (1.2.1+dfsg-3) ... Setting up pyenv (2.7.1-1) ... Setting up r-bioc-s4vectors (0.50.1+dfsg-1) ... Setting up r-cran-hms (1.1.4-1) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-promises (1.5.0+dfsg-2) ... Setting up r-cran-purrr (1.2.2-1) ... Setting up python3-rich-argparse (1.8.0-3) ... Setting up r-cran-sass (0.4.10+dfsg-3) ... Setting up r-cran-dplyr (1.2.1-2) ... Setting up r-cran-reticulate (1.46.0+dfsg-2) ... Setting up r-bioc-dir.expiry (1.20.0+dfsg-1) ... Setting up r-cran-progress (1.2.3-2) ... Setting up r-cran-r.utils (2.13.0-2) ... Setting up r-cran-vroom (1.7.1-1) ... Setting up r-cran-httpuv (1.6.16+dfsg-1) ... Setting up python3-schema-salad (8.9.20260417192335-1) ... Setting up r-bioc-basilisk (1.24.0+dfsg-1) ... Setting up cwl-upgrader (1.2.15+ds-1) ... Setting up r-cran-bslib (0.10.0+dfsg-1) ... Setting up r-cran-readr (2.2.0-1) ... Setting up r-cran-tidyr (1.3.2-3) ... Setting up r-cran-batchtools (0.9.18+dfsg-1) ... Setting up python3-cwl-utils (0.41-2) ... Setting up r-cran-shiny (1.13.0+dfsg-1) ... Setting up r-cran-rmarkdown (2.31+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-2) ... Setting up r-cran-visnetwork (2.1.4+ds-1) ... Setting up r-cran-diagrammer (1.0.12+ds-1) ... Setting up libheif-plugin-libde265:amd64 (1.23.1-1) ... Setting up libheif1:amd64 (1.23.1-1) ... Setting up libgd3:amd64 (2.3.3-14) ... Setting up libheif-plugin-dav1d:amd64 (1.23.1-1) ... Setting up libgvplugin-gd8:amd64 (14.1.2-1+b3) ... Setting up graphviz (14.1.2-1+b3) ... Setting up python3-pydot (4.0.1-1) ... Setting up python3-prov (2.1.1-1) ... Setting up cwltool (3.2.20260413085819-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... Processing triggers for ca-certificates (20260601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 1m5.2s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 1m5.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpaqecvu60/./tmp/piuparts-depends-dummy.deb 1m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 1m5.2s DUMP: piuparts-depends-dummy install ok installed 1m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 1m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', 'piuparts-depends-dummy'] 1m5.3s DUMP: (Reading database ... 66014 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 1m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', 'piuparts-depends-dummy'] 1m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'clean'] 1m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'clean'] 1m5.4s DEBUG: Recording chroot state 1m6.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 1m9.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 1m13.5s ERROR: WARN: Broken symlinks: /usr/share/pyenv/plugins/python-build/README.md.gz -> ../../../doc/pyenv/pluglins/python-build/README.md.gz /usr/share/pyenv/plugins/python-build/scripts/README.md -> ../../../../doc/pyenv/pluglins/python-build/scripts/README.md /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js /usr/share/doc/python3-schema-salad/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js /usr/share/doc/python3-schema-salad/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js /usr/share/doc/python3-schema-salad/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js /usr/share/doc/python3-schema-salad/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js /usr/share/doc/python3-schema-salad/html/_static/js/theme.js -> ../../../../../sphinx_rtd_theme/static/js/theme.js /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.svg -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.eot -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf /usr/share/doc/python3-schema-salad/html/_static/css/theme.css -> ../../../../../sphinx_rtd_theme/static/css/theme.css /usr/share/doc/python3-schema-salad/html/_static/css/badge_only.css -> ../../../../../sphinx_rtd_theme/static/css/badge_only.css 1m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy'] 1m14.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy'] 1m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m14.2s DUMP: r-bioc-rcwl: Installed: (none) Candidate: 1.28.0+dfsg-1 Version table: 1.28.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.28.0+dfsg-1'] 1m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-rcwl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 339 kB of archives. After this operation, 453 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 r-bioc-rcwl all 1.28.0+dfsg-1 [339 kB] Fetched 339 kB in 0s (5972 kB/s) Selecting previously unselected package r-bioc-rcwl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66014 files and directories currently installed.) Preparing to unpack .../r-bioc-rcwl_1.28.0+dfsg-1_all.deb ... Unpacking r-bioc-rcwl (1.28.0+dfsg-1) ... Setting up r-bioc-rcwl (1.28.0+dfsg-1) ... 1m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.28.0+dfsg-1'] 1m15.3s INFO: Running scripts post_install 1m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_install_exceptions'] 1m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_install_exceptions'] 1m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'systemd-tmpfiles', '--cat-config'] 1m15.3s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m15.3s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'systemd-tmpfiles', '--cat-config'] 1m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'remove', 'r-bioc-rcwl'] 1m16.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: curl cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-glyphicons-halflings fonts-mathjax gcc-15-base graphviz javascript-common libabsl20260526 libamd3 libaom3 libavif16 libblas3 libboost-dev libboost1.90-dev libbz2-dev libcairo2 libcdt6 libcgraph8 libcolamd3 libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libevent-2.1-7t64 libffi-dev libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgd3 libgfortran5 libglib2.0-0t64 libglpk40 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgraphite2-3 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libicu78 libidn2-dev libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 liblerc4 libltdl7 liblua5.4-0 liblzma-dev libncurses-dev libncurses6 libngtcp2-crypto-ossl0 libnspr4 libnspr4-dev libnss3 libnss3-dev libnuma1 libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librav1e0.8 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libsqlite3-0 libsqlite3-dev libssl-dev libstdc++-15-dev libsuitesparseconfig7 libsvtav1enc4 libtasn1-6-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libunbound8 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxml2-dev libxmlsec1-10310 libxmlsec1-dev libxmlsec1-gnutls10310 libxmlsec1-nss10310 libxmlsec1-openssl10310 libxpm4 libxrender1 libxslt1-dev libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 media-types nettle-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pyenv pyenv-runtime python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.14 python3.14-minimal r-base-core r-bioc-basilisk r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-otel r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-pkg-team-core-architecture readline-common unzip wget x11-common xdg-utils zip zlib1g-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: r-bioc-rcwl 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 453 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66048 files and directories currently installed.) Removing r-bioc-rcwl (1.28.0+dfsg-1) ... 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'remove', 'r-bioc-rcwl'] 1m16.4s INFO: Reinstalling after remove 1m16.4s INFO: Running scripts pre_install 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_database-server'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_database-server'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_exceptions'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_exceptions'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_extras'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_extras'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy'] 1m16.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m16.4s DUMP: r-bioc-rcwl: Installed: (none) Candidate: 1.28.0+dfsg-1 Version table: 1.28.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.28.0+dfsg-1'] 1m17.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following NEW packages will be installed: r-bioc-rcwl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/339 kB of archives. After this operation, 453 kB of additional disk space will be used. Selecting previously unselected package r-bioc-rcwl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66014 files and directories currently installed.) Preparing to unpack .../r-bioc-rcwl_1.28.0+dfsg-1_all.deb ... Unpacking r-bioc-rcwl (1.28.0+dfsg-1) ... Setting up r-bioc-rcwl (1.28.0+dfsg-1) ... 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', 'install', 'r-bioc-rcwl=1.28.0+dfsg-1'] 1m17.6s INFO: Running scripts post_install 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_install_exceptions'] 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_install_exceptions'] 1m17.6s INFO: Running scripts pre_install 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_database-server'] 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_database-server'] 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_exceptions'] 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_exceptions'] 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_extras'] 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_extras'] 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture'] 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture'] 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy'] 1m17.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy'] 1m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m17.7s DUMP: r-bioc-rcwl: Installed: 1.28.0+dfsg-1 Candidate: 1.28.0+dfsg-1 Version table: *** 1.28.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-cache', 'policy', 'r-bioc-rcwl'] 1m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-rcwl=1.28.0+dfsg-1'] 1m18.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/339 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66048 files and directories currently installed.) Preparing to unpack .../r-bioc-rcwl_1.28.0+dfsg-1_all.deb ... Unpacking r-bioc-rcwl (1.28.0+dfsg-1) over (1.28.0+dfsg-1) ... Setting up r-bioc-rcwl (1.28.0+dfsg-1) ... 1m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', '-y', 'install', '--reinstall', 'r-bioc-rcwl=1.28.0+dfsg-1'] 1m18.9s INFO: Running scripts post_install 1m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_install_exceptions'] 1m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_install_exceptions'] 1m19.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 1m22.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 1m26.3s ERROR: WARN: Broken symlinks: /usr/share/pyenv/plugins/python-build/README.md.gz -> ../../../doc/pyenv/pluglins/python-build/README.md.gz (pyenv) /usr/share/pyenv/plugins/python-build/scripts/README.md -> ../../../../doc/pyenv/pluglins/python-build/scripts/README.md (pyenv) /usr/share/doc/python3-networkx/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-networkx) /usr/share/doc/python3-networkx/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-networkx) /usr/share/doc/python3-schema-salad/html/_static/sphinx_highlight.js -> ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/language_data.js -> ../../../../javascript/sphinxdoc/1.0/language_data.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/js/theme.js -> ../../../../../sphinx_rtd_theme/static/js/theme.js (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.woff -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.svg -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/fontawesome-webfont.eot -> ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/RobotoSlab-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Regular.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Italic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-BoldItalic.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.woff2 -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/fonts/Lato-Bold.ttf -> ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/css/theme.css -> ../../../../../sphinx_rtd_theme/static/css/theme.css (python3-schema-salad) /usr/share/doc/python3-schema-salad/html/_static/css/badge_only.css -> ../../../../../sphinx_rtd_theme/static/css/badge_only.css (python3-schema-salad) 1m29.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', '-ac', '--ignore-obsolete'] 1m37.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', '-ac', '--ignore-obsolete'] 1m37.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.1s DUMP: 0.15.9~deb12u1 1m37.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.1s INFO: Running adequate version 0.15.9~deb12u1 now. 1m37.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'r-bioc-rcwl'] 1m37.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'r-bioc-rcwl'] 1m37.2s INFO: Running scripts pre_remove 1m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_exceptions'] 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_exceptions'] 1m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/pre_remove_preseed_cleanup'] 1m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m51.2s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed binutils binutils 2.47-2 install ok installed binutils-common:amd64 binutils-common 2.47-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47-2 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6+b2 install ok installed ca-certificates ca-certificates 20260601 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.1.0-3 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.1.0-3 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed curl curl 8.21.0-2 install ok installed cwl-upgrader cwl-upgrader 1.2.15+ds-1 install ok installed cwltool cwltool 3.2.20260413085819-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed dpkg-dev dpkg-dev 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed fonts-font-awesome fonts-font-awesome 7.3.0+dfsg-1 install ok installed fonts-font-awesome-legacy fonts-font-awesome-legacy 6-3 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-7 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.1.0-3 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.1.0-3 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-15-base:amd64 gcc-15-base 15.3.0-2 install ok installed gcc-16 gcc-16 16.1.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.1.0-3 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.1.0-3 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed git git 1:2.55.0-1 install ok installed git-man git-man 1:2.55.0-1 install ok installed graphviz graphviz 14.1.2-1+b3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed javascript-common javascript-common 12+nmu1 install ok installed libabsl20260526:amd64 libabsl20260526 20260526.0-2 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libamd3:amd64 libamd3 1:7.12.2+dfsg-1 install ok installed libaom3:amd64 libaom3 3.14.1-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libasan8:amd64 libasan8 16.1.0-3 install ok installed libatomic1:amd64 libatomic1 16.1.0-3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libavif16:amd64 libavif16 1.4.2-1 install ok installed libbinutils:amd64 libbinutils 2.47-2 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libboost-dev:amd64 libboost-dev 1.90.0.2 install ok installed libboost1.90-dev:amd64 libboost1.90-dev 1.90.0-6 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-17 install ok installed libc-dev-bin libc-dev-bin 2.42-17 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-17 install ok installed libc6:amd64 libc6 2.42-17 install ok installed libc6-dev:amd64 libc6-dev 2.42-17 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcc1-0:amd64 libcc1-0 16.1.0-3 install ok installed libcdt6:amd64 libcdt6 14.1.2-1+b3 install ok installed libcgraph8:amd64 libcgraph8 14.1.2-1+b3 install ok installed libcolamd3:amd64 libcolamd3 1:7.12.2+dfsg-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.47-2 install ok installed libctf0:amd64 libctf0 2.47-2 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.21.0-2 install ok installed libcurl4t64:amd64 libcurl4t64 8.21.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdav1d7:amd64 libdav1d7 1.5.4-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libde265-0:amd64 libde265-0 1.1.1-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libdpkg-perl libdpkg-perl 1.23.7 install ok installed liberror-perl liberror-perl 0.17030-1 install ok installed libevent-2.1-7t64:amd64 libevent-2.1-7t64 2.1.13-stable-1 install ok installed libexpat1:amd64 libexpat1 2.8.2-1 install ok installed libffi-dev:amd64 libffi-dev 3.7.1-2 install ok installed libffi8:amd64 libffi8 3.7.1-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2+b2 install ok installed libgcc-15-dev:amd64 libgcc-15-dev 15.3.0-2 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.1.0-3 install ok installed libgcc-s1:amd64 libgcc-s1 16.1.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.12.2-1 install ok installed libgd3:amd64 libgd3 2.3.3-14 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.1.0-3 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.88.3-2 install ok installed libglpk40:amd64 libglpk40 5.0-3 install ok installed libgmp-dev:amd64 libgmp-dev 2:6.3.0+dfsg-5+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.3.0+dfsg-5+b2 install ok installed libgnutls-dane0t64:amd64 libgnutls-dane0t64 3.8.13-1 install ok installed libgnutls28-dev:amd64 libgnutls28-dev 3.8.13-1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.1.0-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.61-3 install ok installed libgprofng0:amd64 libgprofng0 2.47-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libgvc7:amd64 libgvc7 14.1.2-1+b3 install ok installed libgvplugin-gd8:amd64 libgvplugin-gd8 14.1.2-1+b3 install ok installed libgvplugin-pango8:amd64 libgvplugin-pango8 14.1.2-1+b3 install ok installed libgvpr2:amd64 libgvpr2 14.1.2-1+b3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.23.1-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.23.1-1 install ok installed libheif1:amd64 libheif1 1.23.1-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhwasan0:amd64 libhwasan0 16.1.0-3 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libidn2-dev:amd64 libidn2-dev 2.3.8-5 install ok installed libimagequant0:amd64 libimagequant0 4.4.1-1+b2 install ok installed libisl23:amd64 libisl23 0.28-1 install ok installed libitm1:amd64 libitm1 16.1.0-3 install ok installed libjansson4:amd64 libjansson4 2.15.1-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-7 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.2+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 10.7.3+dfsg-5 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.14.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-2 install ok installed libjs-modernizr libjs-modernizr 3.13.0-0.1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-7 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-3 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed libldap2:amd64 libldap2 2.6.13+dfsg-1+b1 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed liblsan0:amd64 liblsan0 16.1.0-3 install ok installed libltdl7:amd64 libltdl7 2.5.4-11 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.8-2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma-dev:amd64 liblzma-dev 5.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncurses-dev:amd64 libncurses-dev 6.6+20260608-2 install ok installed libncurses6:amd64 libncurses6 6.6+20260608-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libnspr4:amd64 libnspr4 2:4.39-1 install ok installed libnspr4-dev libnspr4-dev 2:4.39-1 install ok installed libnss3:amd64 libnss3 2:3.126-1 install ok installed libnss3-dev:amd64 libnss3-dev 2:3.126-1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1+b2 install ok installed libp11-kit-dev:amd64 libp11-kit-dev 0.26.4-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.4-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.0-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.0-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.0-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.4 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.4 install ok installed libpathplan4:amd64 libpathplan4 14.1.2-1+b3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libperl5.42:amd64 libperl5.42 5.42.2-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.58-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.6-3 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.1-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.6-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.6-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.6-1 install ok installed libquadmath0:amd64 libquadmath0 16.1.0-3 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-11 install ok installed libreadline-dev:amd64 libreadline-dev 8.3-4 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsframe3:amd64 libsframe3 2.47-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b2 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libsqlite3-dev:amd64 libsqlite3-dev 3.53.4-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-5 install ok installed libssl-dev:amd64 libssl-dev 3.6.3-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++-15-dev:amd64 libstdc++-15-dev 15.3.0-2 install ok installed libstdc++-16-dev:amd64 libstdc++-16-dev 16.1.0-3 install ok installed libstdc++6:amd64 libstdc++6 16.1.0-3 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.12.2+dfsg-1 install ok installed libsvtav1enc4:amd64 libsvtav1enc4 4.1.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtasn1-6-dev:amd64 libtasn1-6-dev 4.21.0-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.18+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtsan2:amd64 libtsan2 16.1.0-3 install ok installed libubsan1:amd64 libubsan1 16.1.0-3 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libunbound8:amd64 libunbound8 1.26.0-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libuv1t64:amd64 libuv1t64 1.52.1-4 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxdot4:amd64 libxdot4 14.1.2-1+b3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2-16:amd64 libxml2-16 2.15.3+dfsg-1 install ok installed libxml2-dev:amd64 libxml2-dev 2.15.3+dfsg-1 install ok installed libxmlsec1-10310:amd64 libxmlsec1-10310 1.3.10-2 install ok installed libxmlsec1-dev libxmlsec1-dev 1.3.10-2 install ok installed libxmlsec1-gnutls10310:amd64 libxmlsec1-gnutls10310 1.3.10-2 install ok installed libxmlsec1-nss10310:amd64 libxmlsec1-nss10310 1.3.10-2 install ok installed libxmlsec1-openssl10310:amd64 libxmlsec1-openssl10310 1.3.10-2 install ok installed libxpm4:amd64 libxpm4 1:3.5.19-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxslt1-dev:amd64 libxslt1-dev 1.1.45-0.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.45-0.1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0.1949.20260706-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.1.7-1 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed make make 4.4.1-3 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.5 install ok installed nettle-dev:amd64 nettle-dev 3.10.2-1+b1 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5.1 install ok installed openssl openssl 3.6.3-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed pandoc pandoc 3.10-1 install ok installed pandoc-data pandoc-data 3.10-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed patch patch 2.8-2 install ok installed perl perl 5.42.2-3 install ok installed perl-base perl-base 5.42.2-3 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.2-3 install ok installed procps procps 2:4.0.6-3 install ok installed pyenv pyenv 2.7.1-1 install ok installed pyenv-runtime pyenv-runtime 2.7.1-1 install ok installed python3 python3 3.14.6-1 install ok installed python3-arcp python3-arcp 0.2.1-7 install ok installed python3-argcomplete python3-argcomplete 3.7.0-1 install ok installed python3-cachecontrol python3-cachecontrol 0.14.4-1 install ok installed python3-certifi python3-certifi 2026.7.22+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-2 install ok installed python3-cwl-utils python3-cwl-utils 0.41-2 install ok installed python3-dateutil python3-dateutil 2.9.0-5 install ok installed python3-filelock python3-filelock 3.32.0-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-7 install ok installed python3-idna python3-idna 3.18-1 install ok installed python3-linkify-it python3-linkify-it 2.1.0-2 install ok installed python3-lxml:amd64 python3-lxml 6.1.0-1 install ok installed python3-markdown-it python3-markdown-it 4.2.0-3 install ok installed python3-mdurl python3-mdurl 0.1.2-1 install ok installed python3-minimal python3-minimal 3.14.6-1 install ok installed python3-mistune python3-mistune 3.1.4-1 install ok installed python3-msgpack python3-msgpack 1.1.2-4 install ok installed python3-mypy-extensions python3-mypy-extensions 1.1.0-3 install ok installed python3-networkx python3-networkx 3.4.2-5 install ok installed python3-packaging python3-packaging 26.2-2 install ok installed python3-prov python3-prov 2.1.1-1 install ok installed python3-psutil python3-psutil 7.1.0-1 install ok installed python3-pydot python3-pydot 4.0.1-1 install ok installed python3-pygments python3-pygments 2.20.0+dfsg-2 install ok installed python3-pyparsing python3-pyparsing 3.3.2-2 install ok installed python3-rdflib python3-rdflib 7.6.0-2 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-rich python3-rich 15.0.0-1 install ok installed python3-rich-argparse python3-rich-argparse 1.8.0-3 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.18.14-4 install ok installed python3-ruamel.yaml.clib python3-ruamel.yaml.clib 0.2.15+ds2-2 install ok installed python3-schema-salad python3-schema-salad 8.9.20260417192335-1 install ok installed python3-spython python3-spython 0.3.13-2 install ok installed python3-typing-extensions python3-typing-extensions 4.16.0-4 install ok installed python3-uc-micro python3-uc-micro 2.0.0-1 install ok installed python3-urllib3 python3-urllib3 2.7.0-3 install ok installed python3.14 python3.14 3.14.6-1 install ok installed python3.14-minimal python3.14-minimal 3.14.6-1 install ok installed r-base-core r-base-core 4.6.1-3 install ok installed r-bioc-basilisk r-bioc-basilisk 1.24.0+dfsg-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.46.0-1 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.20.0+dfsg-1 install ok installed r-bioc-rcwl r-bioc-rcwl 1.28.0+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.50.1+dfsg-1 install ok installed r-cran-backports r-cran-backports 1.5.1-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-6-2 install ok installed r-cran-base64url r-cran-base64url 1.4-3 install ok installed r-cran-batchtools r-cran-batchtools 0.9.18+dfsg-1 install ok installed r-cran-bh r-cran-bh 1.90.0-1 install ok installed r-cran-bit r-cran-bit 4.6.0+dfsg-3 install ok installed r-cran-bit64 r-cran-bit64 4.8.2-1 install ok installed r-cran-brew r-cran-brew 1.0-10-2 install ok installed r-cran-bslib r-cran-bslib 0.10.0+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-3 install ok installed r-cran-checkmate r-cran-checkmate 2.3.4-1 install ok installed r-cran-cli r-cran-cli 3.6.6-1 install ok installed r-cran-clipr r-cran-clipr 0.8.1-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-commonmark r-cran-commonmark 2.0.0-2 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.5-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-2 install ok installed r-cran-data.table r-cran-data.table 1.18.4+dfsg-1 install ok installed r-cran-diagrammer r-cran-diagrammer 1.0.12+ds-1 install ok installed r-cran-digest r-cran-digest 0.6.39-1 install ok installed r-cran-dplyr r-cran-dplyr 1.2.1-2 install ok installed r-cran-evaluate r-cran-evaluate 1.0.5-3 install ok installed r-cran-farver r-cran-farver 2.1.2-3 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-3 install ok installed r-cran-filelock r-cran-filelock 1.0.3-2 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.3-2 install ok installed r-cran-formatr r-cran-formatr 1.14-3 install ok installed r-cran-fs r-cran-fs 2.1.0+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.9-2 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-4 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-glue r-cran-glue 1.8.1-2 install ok installed r-cran-here r-cran-here 1.0.2-1 install ok installed r-cran-highr r-cran-highr 0.12+dfsg-1 install ok installed r-cran-hms r-cran-hms 1.1.4-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.9-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-2 install ok installed r-cran-httpuv r-cran-httpuv 1.6.16+dfsg-1 install ok installed r-cran-igraph r-cran-igraph 2.3.3-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-6 install ok installed r-cran-jsonlite r-cran-jsonlite 2.0.0+dfsg-2 install ok installed r-cran-knitr r-cran-knitr 1.51+dfsg-2 install ok installed r-cran-labeling r-cran-labeling 0.4.3-2 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-3 install ok installed r-cran-later r-cran-later 1.4.8+dfsg-3 install ok installed r-cran-lattice r-cran-lattice 0.22-9-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.23-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.5-1 install ok installed r-cran-matrix r-cran-matrix 1.7-6-1 install ok installed r-cran-memoise r-cran-memoise 2.0.1-2 install ok installed r-cran-mime r-cran-mime 0.13-2 install ok installed r-cran-otel r-cran-otel 0.2.0-1 install ok installed r-cran-pillar r-cran-pillar 1.11.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-3 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-png r-cran-png 0.1-9-1 install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-2 install ok installed r-cran-progress r-cran-progress 1.2.3-2 install ok installed r-cran-promises r-cran-promises 1.5.0+dfsg-2 install ok installed r-cran-purrr r-cran-purrr 1.2.2-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.8.2-2 install ok installed r-cran-r.oo r-cran-r.oo 1.27.1-1 install ok installed r-cran-r.utils r-cran-r.utils 2.13.0-2 install ok installed r-cran-r6 r-cran-r6 2.6.1-2 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.4-2 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-2 install ok installed r-cran-rcpp r-cran-rcpp 1.1.2-1 install ok installed r-cran-rcpptoml r-cran-rcpptoml 0.2.3+dfsg-3 install ok installed r-cran-readr r-cran-readr 2.2.0-1 install ok installed r-cran-reticulate r-cran-reticulate 1.46.0+dfsg-2 install ok installed r-cran-rlang r-cran-rlang 1.3.0-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.31+dfsg-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.1.1-3 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.19.0-1 install ok installed r-cran-sass r-cran-sass 0.4.10+dfsg-3 install ok installed r-cran-scales r-cran-scales 1.4.0-1 install ok installed r-cran-shiny r-cran-shiny 1.13.0+dfsg-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-2-2 install ok installed r-cran-stringi r-cran-stringi 1.8.7-2 install ok installed r-cran-stringr r-cran-stringr 1.6.0-1 install ok installed r-cran-tibble r-cran-tibble 3.3.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.2-3 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-3 install ok installed r-cran-tinytex r-cran-tinytex 0.60-1 install ok installed r-cran-tzdb r-cran-tzdb 0.5.0-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.6-2 install ok installed r-cran-vctrs r-cran-vctrs 0.7.3-2 install ok installed r-cran-viridislite r-cran-viridislite 0.4.3-1 install ok installed r-cran-visnetwork r-cran-visnetwork 2.1.4+ds-1 install ok installed r-cran-vroom r-cran-vroom 1.7.1-1 install ok installed r-cran-withr r-cran-withr 3.0.3+dfsg-1 install ok installed r-cran-xfun r-cran-xfun 0.60+dfsg-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-8-1 install ok installed r-cran-yaml r-cran-yaml 2.3.12-2 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed readline-common readline-common 8.3-4 install ok installed rpcsvc-proto rpcsvc-proto 1.4.4-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed unzip unzip 6.0-30 install ok installed util-linux util-linux 2.42.2-2 install ok installed wget wget 1.25.0-3 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xz-utils xz-utils 5.8.3-1 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.2-3 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'cwl-upgrader', 'cwltool', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-15-base:amd64', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'graphviz', 'javascript-common', 'libabsl20260526:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'liblzma-dev:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnspr4-dev', 'libnss3:amd64', 'libnss3-dev:amd64', 'libnuma1:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsqlite3-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-15-dev:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxml2-dev:amd64', 'libxmlsec1-10310:amd64', 'libxmlsec1-dev', 'libxmlsec1-gnutls10310:amd64', 'libxmlsec1-nss10310:amd64', 'libxmlsec1-openssl10310:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'make', 'media-types', 'netbase', 'nettle-dev:amd64', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.42', 'pyenv', 'pyenv-runtime', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-otel', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'unzip', 'wget', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-rcwl'] 2m0.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu curl cwl-upgrader cwltool dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-glyphicons-halflings fonts-mathjax g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15-base gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man graphviz javascript-common libabsl20260526 libamd3 libaom3 libasan8 libatomic1 libavif16 libbinutils libblas3 libboost-dev libboost1.90-dev libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcdt6 libcgraph8 libcolamd3 libcom-err2 libctf-nobfd0 libctf0 libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl liberror-perl libevent-2.1-7t64 libexpat1 libffi-dev libffi8 libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgcc-15-dev libgcc-16-dev libgcrypt20 libgd3 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu78 libidn2-0 libidn2-dev libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libmpfr6 libncurses-dev libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnspr4 libnspr4-dev libnss3 libnss3-dev libnuma1 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpathplan4 libperl5.42 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib libquadmath0 librav1e0.8 libreadline-dev libreadline8t64 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsqlite3-0 libsqlite3-dev libssh2-1t64 libssl-dev libstdc++-15-dev libstdc++-16-dev libsuitesparseconfig7 libsvtav1enc4 libtasn1-6 libtasn1-6-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxml2-16 libxml2-dev libxmlsec1-10310 libxmlsec1-dev libxmlsec1-gnutls10310 libxmlsec1-nss10310 libxmlsec1-openssl10310 libxpm4 libxrender1 libxslt1-dev libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 linux-libc-dev make media-types netbase nettle-dev node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data patch perl perl-modules-5.42 pyenv pyenv-runtime python3 python3-arcp python3-argcomplete python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly python3-idna python3-linkify-it python3-lxml python3-markdown-it python3-mdurl python3-minimal python3-mistune python3-msgpack python3-mypy-extensions python3-networkx python3-packaging python3-prov python3-psutil python3-pydot python3-pygments python3-pyparsing python3-rdflib python3-requests python3-rich python3-rich-argparse python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad python3-spython python3-typing-extensions python3-uc-micro python3-urllib3 python3.14 python3.14-minimal r-base-core r-bioc-basilisk r-bioc-biocgenerics r-bioc-biocparallel r-bioc-dir.expiry r-bioc-rcwl r-bioc-s4vectors r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchtools r-cran-bh r-cran-bit r-cran-bit64 r-cran-brew r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-diagrammer r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime r-cran-otel r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpptoml r-cran-readr r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-visnetwork r-cran-vroom r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-pkg-team-core-architecture readline-common rpcsvc-proto unzip wget x11-common xdg-utils xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 395 to remove and 0 not upgraded. After this operation, 2146 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66048 files and directories currently installed.) Removing r-bioc-rcwl (1.28.0+dfsg-1) ... Removing r-cran-diagrammer (1.0.12+ds-1) ... Removing r-cran-visnetwork (2.1.4+ds-1) ... Removing r-cran-htmlwidgets (1.6.4+dfsg-2) ... Removing r-cran-rmarkdown (2.31+dfsg-1) ... Removing r-cran-shiny (1.13.0+dfsg-1) ... Removing r-cran-bslib (0.10.0+dfsg-1) ... Removing r-cran-sass (0.4.10+dfsg-3) ... Removing r-bioc-basilisk (1.24.0+dfsg-1) ... Removing r-cran-reticulate (1.46.0+dfsg-2) ... Removing pyenv (2.7.1-1) ... Removing build-essential (12.12) ... Removing g++ (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing dpkg-dev (1.23.7) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing bzip2 (1.0.8-6+b2) ... Removing cwltool (3.2.20260413085819-1) ... Removing python3-cwl-utils (0.41-2) ... Removing r-bioc-biocparallel (1.46.0-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-cran-igraph (2.3.3-1) ... Removing r-cran-matrix (1.7-6-1) ... Removing cpp (4:16.1.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing curl (8.21.0-2) ... Removing cwl-upgrader (1.2.15+ds-1) ... Removing python3-prov (2.1.1-1) ... Removing python3-pydot (4.0.1-1) ... Removing graphviz (14.1.2-1+b3) ... Removing libgvplugin-pango8:amd64 (14.1.2-1+b3) ... Removing libgvplugin-gd8:amd64 (14.1.2-1+b3) ... Removing libgd3:amd64 (2.3.3-14) ... Removing fonts-font-awesome (7.3.0+dfsg-1) ... Removing fonts-font-awesome-legacy (6-3) ... Removing r-cran-knitr (1.51+dfsg-2) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing g++-16 (16.1.0-3) ... Removing g++-16-x86-64-linux-gnu (16.1.0-3) ... Removing r-cran-bh (1.90.0-1) ... Removing libboost-dev:amd64 (1.90.0.2) ... Removing libboost1.90-dev:amd64 (1.90.0-6) ... Removing libstdc++-15-dev:amd64 (15.3.0-2) ... Removing libgcc-15-dev:amd64 (15.3.0-2) ... Removing gcc-15-base:amd64 (15.3.0-2) ... Removing r-cran-tinytex (0.60-1) ... Removing r-cran-highr (0.12+dfsg-1) ... Removing r-cran-xfun (0.60+dfsg-1) ... Removing git (1:2.55.0-1) ... Removing git-man (1:2.55.0-1) ... Removing libjs-bootstrap4 (4.6.2+dfsg-2) ... Removing libjs-popper.js (1.16.1+ds-7) ... Removing javascript-common (12+nmu1) ... Removing libavif16:amd64 (1.4.2-1) ... Removing libgav1-2:amd64 (0.20.0-2+b2) ... Removing libabsl20260526:amd64 (20260526.0-2) ... Removing libglpk40:amd64 (5.0-3) ... Removing libamd3:amd64 (1:7.12.2+dfsg-1) ... Removing libaom3:amd64 (3.14.1-1) ... Removing libstdc++-16-dev:amd64 (16.1.0-3) ... Removing libbz2-dev:amd64 (1.0.8-6+b2) ... Removing libxmlsec1-dev (1.3.10-2) ... Removing libxslt1-dev:amd64 (1.1.45-0.1) ... Removing libxml2-dev:amd64 (2.15.3+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Removing libsqlite3-dev:amd64 (3.53.4-2) ... Removing libreadline-dev:amd64 (8.3-4) ... Removing libncurses-dev:amd64 (6.6+20260608-2) ... Removing libgnutls28-dev:amd64 (3.8.13-1) ... Removing libc6-dev:amd64 (2.42-17) ... Removing libc-dev-bin (2.42-17) ... Removing libgvpr2:amd64 (14.1.2-1+b3) ... Removing libgvc7:amd64 (14.1.2-1+b3) ... Removing libcgraph8:amd64 (14.1.2-1+b3) ... Removing libcolamd3:amd64 (1:7.12.2+dfsg-1) ... Removing libcurl4-gnutls:amd64 (8.21.0-2) ... Removing libdpkg-perl (1.23.7) ... Removing liberror-perl (0.17030-1) ... Removing libgnutls-dane0t64:amd64 (3.8.13-1) ... Removing libunbound8:amd64 (1.26.0-1) ... Removing libevent-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing python3-coloredlogs (15.0.1-2) ... Removing python3-humanfriendly (10.0-7) ... Removing python3-psutil (7.1.0-1) ... Removing libffi-dev:amd64 (3.7.1-2) ... Removing pandoc (3.10-1) ... Removing python3-lxml:amd64 (6.1.0-1) ... Removing libxmlsec1-openssl10310:amd64 (1.3.10-2) ... Removing perl (5.42.2-3) ... Removing libperl5.42:amd64 (5.42.2-3) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing nettle-dev:amd64 (3.10.2-1+b1) ... Removing libgmp-dev:amd64 (2:6.3.0+dfsg-5+b2) ... Removing libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5+b2) ... Removing libxmlsec1-gnutls10310:amd64 (1.3.10-2) ... Removing wget (1.25.0-3) ... Removing libsuitesparseconfig7:amd64 (1:7.12.2+dfsg-1) ... Removing r-cran-batchtools (0.9.18+dfsg-1) ... Removing r-cran-data.table (1.18.4+dfsg-1) ... Removing r-cran-tidyr (1.3.2-3) ... Removing r-cran-stringr (1.6.0-1) ... Removing r-cran-stringi (1.8.7-2) ... Removing libidn2-dev:amd64 (2.3.8-5) ... Removing libimagequant0:amd64 (4.4.1-1+b2) ... Removing libyuv0:amd64 (0.0.1949.20260706-1) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing libjs-highlight.js (10.7.3+dfsg-5) ... Removing r-cran-jquerylib (0.1.4+dfsg-6) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-ui (1.14.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-2) ... Removing libjs-modernizr (3.13.0-0.1) ... Removing libjs-prettify (2015.12.04+dfsg-3) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libltdl7:amd64 (2.5.4-11) ... Removing liblua5.4-0:amd64 (5.4.8-2) ... Removing liblzma-dev:amd64 (5.8.3-1) ... Removing libncurses6:amd64 (6.6+20260608-2) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libxmlsec1-nss10310:amd64 (1.3.10-2) ... Removing libnss3-dev:amd64 (2:3.126-1) ... Removing libnss3:amd64 (2:3.126-1) ... Removing libnspr4-dev (2:4.39-1) ... Removing libnuma1:amd64 (2.0.19-1+b2) ... Removing libp11-kit-dev:amd64 (0.26.4-1) ... Removing libpathplan4:amd64 (14.1.2-1+b3) ... Removing r-cran-png (0.1-9-1) ... Removing librav1e0.8:amd64 (0.8.1-11) ... Removing libssl-dev:amd64 (3.6.3-1) ... Removing libsvtav1enc4:amd64 (4.1.0+dfsg-1) ... Removing libtasn1-6-dev:amd64 (4.21.0-2+b1) ... Removing r-cran-httpuv (1.6.16+dfsg-1) ... Removing r-cran-fs (2.1.0+dfsg-1) ... Removing libuv1t64:amd64 (1.52.1-4) ... Removing libxdot4:amd64 (14.1.2-1+b3) ... Removing libxpm4:amd64 (1:3.5.19-1) ... Removing linux-libc-dev (7.1.7-1) ... Removing make (4.4.1-3) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5.1) ... Removing pandoc-data (3.10-1) ... Removing patch (2.8-2) ... Removing perl-modules-5.42 (5.42.2-3) ... Removing pyenv-runtime (2.7.1-1) ... Removing python3-arcp (0.2.1-7) ... Removing python3-argcomplete (3.7.0-1) ... Removing python3-dateutil (2.9.0-5) ... Removing python3-networkx (3.4.2-5) ... Removing python3-packaging (26.2-2) ... Removing python3-spython (0.3.13-2) ... Removing python3-typing-extensions (4.16.0-4) ... Removing r-bioc-s4vectors (0.50.1+dfsg-1) ... Removing r-bioc-dir.expiry (1.20.0+dfsg-1) ... Removing r-bioc-biocgenerics (0.58.1-1) ... Removing r-cran-checkmate (2.3.4-1) ... Removing r-cran-base64url (1.4-3) ... Removing r-cran-backports (1.5.1-2) ... Removing r-cran-fontawesome (0.5.3-2) ... Removing r-cran-htmltools (0.5.9-2) ... Removing r-cran-base64enc (0.1-6-2) ... Removing r-cran-readr (2.2.0-1) ... Removing r-cran-vroom (1.7.1-1) ... Removing r-cran-bit64 (4.8.2-1) ... Removing r-cran-bit (4.6.0+dfsg-3) ... Removing r-cran-brew (1.0-10-2) ... Removing r-cran-memoise (2.0.1-2) ... Removing r-cran-cachem (1.1.0-3) ... Removing r-cran-dplyr (1.2.1-2) ... Removing r-cran-tidyselect (1.2.1+dfsg-3) ... Removing r-cran-tibble (3.3.1+dfsg-2) ... Removing r-cran-scales (1.4.0-1) ... Removing r-cran-clipr (0.8.1-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-commonmark (2.0.0-2) ... Removing r-cran-tzdb (0.5.0-1) ... Removing r-cran-cpp11 (0.5.5-1) ... Removing r-cran-progress (1.2.3-2) ... Removing r-cran-crayon (1.5.3-2) ... Removing r-cran-digest (0.6.39-1) ... Removing r-cran-evaluate (1.0.5-3) ... Removing r-cran-farver (2.1.2-3) ... Removing r-cran-promises (1.5.0+dfsg-2) ... Removing r-cran-fastmap (1.2.0-3) ... Removing r-cran-filelock (1.0.3-2) ... Removing r-cran-futile.logger (1.4.9-2) ... Removing r-cran-lambda.r (1.2.4-3) ... Removing r-cran-formatr (1.14-3) ... Removing r-cran-futile.options (1.0.1-4) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-pillar (1.11.1+dfsg-1) ... Removing r-cran-here (1.0.2-1) ... Removing r-cran-hms (1.1.4-1) ... Removing r-cran-jsonlite (2.0.0+dfsg-2) ... Removing r-cran-labeling (0.4.3-2) ... Removing r-cran-later (1.4.8+dfsg-3) ... Removing r-cran-lattice (0.22-9-1) ... Removing r-cran-purrr (1.2.2-1) ... Removing r-cran-rcpptoml (0.2.3+dfsg-3) ... Removing r-cran-rcpp (1.1.2-1) ... Removing r-cran-littler (0.3.23-1) ... Removing r-cran-magrittr (2.0.5-1) ... Removing r-cran-mime (0.13-2) ... Removing r-cran-otel (0.2.0-1) ... Removing r-cran-pkgconfig (2.0.3-3) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-prettyunits (1.2.0-2) ... Removing r-cran-r.utils (2.13.0-2) ... Removing r-cran-r.oo (1.27.1-1) ... Removing r-cran-r.methodss3 (1.8.2-2) ... Removing r-cran-r6 (2.6.1-2) ... Removing r-cran-rappdirs (0.3.4-2) ... Removing r-cran-rcolorbrewer (1.1-3-2) ... Removing r-cran-rprojroot (2.1.1-3) ... Removing r-cran-rstudioapi (0.19.0-1) ... Removing r-cran-sourcetools (0.1.7-2-2) ... Removing r-cran-utf8 (1.2.6-2) ... Removing r-cran-viridislite (0.4.3-1) ... Removing r-cran-withr (3.0.3+dfsg-1) ... Removing r-cran-xtable (1:1.8-8-1) ... Removing r-cran-yaml (2.3.12-2) ... Removing r-pkg-team-core-architecture (20260707) ... Removing rpcsvc-proto (1.4.4-1) ... Removing xz-utils (5.8.3-1) ... Removing gcc-16 (16.1.0-3) ... Removing binutils (2.47-2) ... Removing libgprofng0:amd64 (2.47-2) ... Removing gcc-16-x86-64-linux-gnu (16.1.0-3) ... Removing binutils-x86-64-linux-gnu (2.47-2) ... Removing libctf0:amd64 (2.47-2) ... Removing libbinutils:amd64 (2.47-2) ... Removing binutils-common:amd64 (2.47-2) ... Removing python3-schema-salad (8.9.20260417192335-1) ... Removing python3-cachecontrol (0.14.4-1) ... Removing python3-requests (2.34.2-1) ... Removing cpp-16 (16.1.0-3) ... Removing cpp-16-x86-64-linux-gnu (16.1.0-3) ... Removing libjs-bootstrap (3.4.1+dfsg-7) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Removing libgcc-16-dev:amd64 (16.1.0-3) ... Removing libasan8:amd64 (16.1.0-3) ... Removing libcc1-0:amd64 (16.1.0-3) ... Removing libcdt6:amd64 (14.1.2-1+b3) ... Removing libctf-nobfd0:amd64 (2.47-2) ... Removing python3-ruamel.yaml (0.18.14-4) ... Removing python3-ruamel.yaml.clib (0.2.15+ds2-2) ... Removing python3-rich-argparse (1.8.0-3) ... Removing python3-rich (15.0.0-1) ... Removing python3-markdown-it (4.2.0-3) ... Removing python3-linkify-it (2.1.0-2) ... Removing python3-uc-micro (2.0.0-1) ... Removing python3-mistune (3.1.4-1) ... Removing python3-rdflib (7.6.0-2) ... Removing libxmlsec1-10310:amd64 (1.3.10-2) ... Removing libxslt1.1:amd64 (1.1.45-0.1) ... Removing libgcrypt20:amd64 (1.12.2-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libgpg-error0:amd64 (1.61-3) ... Removing libhwasan0:amd64 (16.1.0-3) ... Removing libisl23:amd64 (0.28-1) ... Removing libitm1:amd64 (16.1.0-3) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing liblsan0:amd64 (16.1.0-3) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing libnspr4:amd64 (2:4.39-1) ... Removing libp11-kit0:amd64 (0.26.4-1) ... Removing libquadmath0:amd64 (16.1.0-3) ... Removing libsframe3:amd64 (2.47-2) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libtsan2:amd64 (16.1.0-3) ... Removing libubsan1:amd64 (16.1.0-3) ... Removing libxml2-16:amd64 (2.15.3+dfsg-1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing python3-certifi (2026.7.22+ds-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.7-2) ... Removing python3-filelock (3.32.0-1) ... Removing python3-idna (3.18-1) ... Removing python3-mdurl (0.1.2-1) ... Removing python3-msgpack (1.1.2-4) ... Removing python3-mypy-extensions (1.1.0-3) ... Removing python3-pygments (2.20.0+dfsg-2) ... Removing python3-pyparsing (3.3.2-2) ... Removing python3-urllib3 (2.7.0-3) ... Removing r-cran-vctrs (0.7.3-2) ... Removing r-cran-glue (1.8.1-2) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-rlang (1.3.0-1) ... Removing python3 (3.14.6-1) ... Removing python3-minimal (3.14.6-1) ... Removing python3.14 (3.14.6-1) ... Removing python3.14-minimal (3.14.6-1) ... Removing libpython3-stdlib:amd64 (3.14.6-1) ... Removing libpython3.14-stdlib:amd64 (3.14.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libpython3.14-minimal:amd64 (3.14.6-1) ... find: '/usr/lib/python3': No such file or directory Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing r-cran-cli (3.6.6-1) ... Removing r-base-core (4.6.1-3) ... Removing ca-certificates (20260601) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.58.0-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.0-1) ... Removing libpango-1.0-0:amd64 (1.58.0-1) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.88.3-2) ... Removing libatomic1:amd64 (16.1.0-3) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcurl4t64:amd64 (8.21.0-2) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libffi8:amd64 (3.7.1-2) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing libgfortran5:amd64 (16.1.0-3) ... Removing libgomp1:amd64 (16.1.0-3) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libpsl5t64:amd64 (0.23.1-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.13+dfsg-1+b1) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebp7:amd64 (1.5.0-0.1+b2) ... Removing libssh2-1t64:amd64 (1.11.1-5) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libthai-data (0.1.30-3) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing openssl (3.6.3-1) ... Removing readline-common (8.3-4) ... Removing unzip (6.0-30) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-16) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing libfreetype6:amd64 (2.14.3+dfsg-2) ... Removing libexpat1:amd64 (2.8.2-1) ... Removing libpng16-16t64:amd64 (1.6.58-1) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libheif1:amd64 (1.23.1-1) ... Removing libheif-plugin-libde265:amd64 (1.23.1-1) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing libde265-0:amd64 (1.1.1-1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Removing libheif-plugin-dav1d:amd64 (1.23.1-1) ... Removing libdav1d7:amd64 (1.5.4-1) ... Processing triggers for libc-bin (2.42-17) ... 2m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'cwl-upgrader', 'cwltool', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-15-base:amd64', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'graphviz', 'javascript-common', 'libabsl20260526:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'liblzma-dev:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnspr4-dev', 'libnss3:amd64', 'libnss3-dev:amd64', 'libnuma1:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsqlite3-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-15-dev:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxml2-dev:amd64', 'libxmlsec1-10310:amd64', 'libxmlsec1-dev', 'libxmlsec1-gnutls10310:amd64', 'libxmlsec1-nss10310:amd64', 'libxmlsec1-openssl10310:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'make', 'media-types', 'netbase', 'nettle-dev:amd64', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.42', 'pyenv', 'pyenv-runtime', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-otel', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'unzip', 'wget', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-rcwl'] 2m0.1s INFO: Running scripts post_remove 2m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_remove_cleanup'] 2m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_remove_cleanup'] 2m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_remove_exceptions'] 2m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_remove_exceptions'] 2m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'cwl-upgrader', 'cwltool', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-15-base:amd64', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'graphviz', 'javascript-common', 'libabsl20260526:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'liblzma-dev:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnspr4-dev', 'libnss3:amd64', 'libnss3-dev:amd64', 'libnuma1:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsqlite3-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-15-dev:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxml2-dev:amd64', 'libxmlsec1-10310:amd64', 'libxmlsec1-dev', 'libxmlsec1-gnutls10310:amd64', 'libxmlsec1-nss10310:amd64', 'libxmlsec1-openssl10310:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'make', 'media-types', 'netbase', 'nettle-dev:amd64', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.42', 'pyenv', 'pyenv-runtime', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-otel', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'unzip', 'wget', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m0.6s DUMP: (Reading database ... 5585 files and directories currently installed.) Purging configuration files for binutils (2.47-2) ... Purging configuration files for binutils-common:amd64 (2.47-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove build-essential which is not installed dpkg: warning: ignoring request to remove bzip2 which is not installed Purging configuration files for ca-certificates (20260601) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:16.1.0-3) ... dpkg: warning: ignoring request to remove cpp-16 which is not installed dpkg: warning: ignoring request to remove cpp-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove curl which is not installed dpkg: warning: ignoring request to remove cwl-upgrader which is not installed dpkg: warning: ignoring request to remove cwltool which is not installed Purging configuration files for dpkg-dev (1.23.7) ... Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove fonts-font-awesome which is not installed dpkg: warning: ignoring request to remove fonts-font-awesome-legacy which is not installed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which is not installed dpkg: warning: ignoring request to remove fonts-mathjax which is not installed dpkg: warning: ignoring request to remove g++ which is not installed dpkg: warning: ignoring request to remove g++-16 which is not installed dpkg: warning: ignoring request to remove g++-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc which is not installed dpkg: warning: ignoring request to remove gcc-15-base which is not installed dpkg: warning: ignoring request to remove gcc-16 which is not installed dpkg: warning: ignoring request to remove gcc-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which is not installed Purging configuration files for git (1:2.55.0-1) ... dpkg: warning: ignoring request to remove git-man which is not installed Purging configuration files for graphviz (14.1.2-1+b3) ... Purging configuration files for javascript-common (12+nmu1) ... dpkg: warning: ignoring request to remove libabsl20260526 which is not installed dpkg: warning: ignoring request to remove libamd3 which is not installed dpkg: warning: ignoring request to remove libaom3 which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libavif16 which is not installed dpkg: warning: ignoring request to remove libbinutils which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libboost-dev which is not installed dpkg: warning: ignoring request to remove libboost1.90-dev which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libbz2-dev which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcc1-0 which is not installed dpkg: warning: ignoring request to remove libcdt6 which is not installed dpkg: warning: ignoring request to remove libcgraph8 which is not installed dpkg: warning: ignoring request to remove libcolamd3 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libctf-nobfd0 which is not installed dpkg: warning: ignoring request to remove libctf0 which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libde265-0 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdpkg-perl which is not installed dpkg: warning: ignoring request to remove liberror-perl which is not installed dpkg: warning: ignoring request to remove libevent-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi-dev which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgav1-2 which is not installed dpkg: warning: ignoring request to remove libgcc-15-dev which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgcrypt20 which is not installed dpkg: warning: ignoring request to remove libgd3 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.88.3-2) ... dpkg: warning: ignoring request to remove libglpk40 which is not installed dpkg: warning: ignoring request to remove libgmp-dev which is not installed dpkg: warning: ignoring request to remove libgmpxx4ldbl which is not installed dpkg: warning: ignoring request to remove libgnutls-dane0t64 which is not installed dpkg: warning: ignoring request to remove libgnutls28-dev which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgpg-error0 which is not installed dpkg: warning: ignoring request to remove libgprofng0 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... Purging configuration files for libgvc7:amd64 (14.1.2-1+b3) ... dpkg: warning: ignoring request to remove libgvplugin-gd8 which is not installed dpkg: warning: ignoring request to remove libgvplugin-pango8 which is not installed dpkg: warning: ignoring request to remove libgvpr2 which is not installed dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which is not installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which is not installed dpkg: warning: ignoring request to remove libheif1 which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libice6 which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libidn2-dev which is not installed dpkg: warning: ignoring request to remove libimagequant0 which is not installed dpkg: warning: ignoring request to remove libisl23 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjansson4 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libjs-bootstrap which is not installed Purging configuration files for libjs-bootstrap4 (4.6.2+dfsg-2) ... dpkg: warning: ignoring request to remove libjs-d3 which is not installed dpkg: warning: ignoring request to remove libjs-es5-shim which is not installed dpkg: warning: ignoring request to remove libjs-highlight.js which is not installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libjs-jquery-datatables which is not installed dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which is not installed dpkg: warning: ignoring request to remove libjs-jquery-ui which is not installed dpkg: warning: ignoring request to remove libjs-json which is not installed dpkg: warning: ignoring request to remove libjs-mathjax which is not installed dpkg: warning: ignoring request to remove libjs-microplugin.js which is not installed dpkg: warning: ignoring request to remove libjs-modernizr which is not installed Purging configuration files for libjs-popper.js (1.16.1+ds-7) ... dpkg: warning: ignoring request to remove libjs-prettify which is not installed dpkg: warning: ignoring request to remove libjs-sifter.js which is not installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove libltdl7 which is not installed dpkg: warning: ignoring request to remove liblua5.4-0 which is not installed dpkg: warning: ignoring request to remove liblzma-dev which is not installed dpkg: warning: ignoring request to remove libmpc3 which is not installed dpkg: warning: ignoring request to remove libmpfr6 which is not installed dpkg: warning: ignoring request to remove libncurses-dev which is not installed dpkg: warning: ignoring request to remove libncurses6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libnspr4 which is not installed dpkg: warning: ignoring request to remove libnspr4-dev which is not installed dpkg: warning: ignoring request to remove libnss3 which is not installed dpkg: warning: ignoring request to remove libnss3-dev which is not installed dpkg: warning: ignoring request to remove libnuma1 which is not installed dpkg: warning: ignoring request to remove libp11-kit-dev which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libpathplan4 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.6-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed dpkg: warning: ignoring request to remove librav1e0.8 which is not installed dpkg: warning: ignoring request to remove libreadline-dev which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsframe3 which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libsqlite3-dev which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libssl-dev which is not installed dpkg: warning: ignoring request to remove libstdc++-15-dev which is not installed dpkg: warning: ignoring request to remove libstdc++-16-dev which is not installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which is not installed dpkg: warning: ignoring request to remove libsvtav1enc4 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtasn1-6-dev which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunbound8 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxdot4 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxml2-dev which is not installed dpkg: warning: ignoring request to remove libxmlsec1-10310 which is not installed dpkg: warning: ignoring request to remove libxmlsec1-dev which is not installed dpkg: warning: ignoring request to remove libxmlsec1-gnutls10310 which is not installed dpkg: warning: ignoring request to remove libxmlsec1-nss10310 which is not installed dpkg: warning: ignoring request to remove libxmlsec1-openssl10310 which is not installed dpkg: warning: ignoring request to remove libxpm4 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxslt1-dev which is not installed dpkg: warning: ignoring request to remove libxslt1.1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed dpkg: warning: ignoring request to remove libyuv0 which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove make which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove nettle-dev which is not installed dpkg: warning: ignoring request to remove node-bootstrap-sass which is not installed dpkg: warning: ignoring request to remove node-html5shiv which is not installed dpkg: warning: ignoring request to remove node-normalize.css which is not installed Purging configuration files for openssl (3.6.3-1) ... dpkg: warning: ignoring request to remove pandoc which is not installed dpkg: warning: ignoring request to remove pandoc-data which is not installed dpkg: warning: ignoring request to remove patch which is not installed Purging configuration files for perl (5.42.2-3) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove pyenv which is not installed dpkg: warning: ignoring request to remove pyenv-runtime which is not installed Purging configuration files for python3 (3.14.6-1) ... dpkg: warning: ignoring request to remove python3-arcp which is not installed Purging configuration files for python3-argcomplete (3.7.0-1) ... dpkg: warning: ignoring request to remove python3-cachecontrol which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-coloredlogs which is not installed dpkg: warning: ignoring request to remove python3-cwl-utils which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-filelock which is not installed dpkg: warning: ignoring request to remove python3-humanfriendly which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-linkify-it which is not installed dpkg: warning: ignoring request to remove python3-lxml which is not installed dpkg: warning: ignoring request to remove python3-markdown-it which is not installed dpkg: warning: ignoring request to remove python3-mdurl which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-mistune which is not installed dpkg: warning: ignoring request to remove python3-msgpack which is not installed dpkg: warning: ignoring request to remove python3-mypy-extensions which is not installed dpkg: warning: ignoring request to remove python3-networkx which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-prov which is not installed dpkg: warning: ignoring request to remove python3-psutil which is not installed dpkg: warning: ignoring request to remove python3-pydot which is not installed dpkg: warning: ignoring request to remove python3-pygments which is not installed dpkg: warning: ignoring request to remove python3-pyparsing which is not installed dpkg: warning: ignoring request to remove python3-rdflib which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-rich which is not installed dpkg: warning: ignoring request to remove python3-rich-argparse which is not installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which is not installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which is not installed dpkg: warning: ignoring request to remove python3-schema-salad which is not installed dpkg: warning: ignoring request to remove python3-spython which is not installed dpkg: warning: ignoring request to remove python3-typing-extensions which is not installed dpkg: warning: ignoring request to remove python3-uc-micro which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.6-1) ... Purging configuration files for r-base-core (4.6.1-3) ... dpkg: warning: ignoring request to remove r-bioc-basilisk which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which is not installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which is not installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which is not installed dpkg: warning: ignoring request to remove r-cran-backports which is not installed dpkg: warning: ignoring request to remove r-cran-base64enc which is not installed dpkg: warning: ignoring request to remove r-cran-base64url which is not installed dpkg: warning: ignoring request to remove r-cran-batchtools which is not installed dpkg: warning: ignoring request to remove r-cran-bh which is not installed dpkg: warning: ignoring request to remove r-cran-bit which is not installed dpkg: warning: ignoring request to remove r-cran-bit64 which is not installed dpkg: warning: ignoring request to remove r-cran-brew which is not installed dpkg: warning: ignoring request to remove r-cran-bslib which is not installed dpkg: warning: ignoring request to remove r-cran-cachem which is not installed dpkg: warning: ignoring request to remove r-cran-checkmate which is not installed dpkg: warning: ignoring request to remove r-cran-cli which is not installed dpkg: warning: ignoring request to remove r-cran-clipr which is not installed dpkg: warning: ignoring request to remove r-cran-codetools which is not installed dpkg: warning: ignoring request to remove r-cran-commonmark which is not installed dpkg: warning: ignoring request to remove r-cran-cpp11 which is not installed dpkg: warning: ignoring request to remove r-cran-crayon which is not installed dpkg: warning: ignoring request to remove r-cran-data.table which is not installed dpkg: warning: ignoring request to remove r-cran-diagrammer which is not installed dpkg: warning: ignoring request to remove r-cran-digest which is not installed dpkg: warning: ignoring request to remove r-cran-dplyr which is not installed dpkg: warning: ignoring request to remove r-cran-evaluate which is not installed dpkg: warning: ignoring request to remove r-cran-farver which is not installed dpkg: warning: ignoring request to remove r-cran-fastmap which is not installed dpkg: warning: ignoring request to remove r-cran-filelock which is not installed dpkg: warning: ignoring request to remove r-cran-fontawesome which is not installed dpkg: warning: ignoring request to remove r-cran-formatr which is not installed dpkg: warning: ignoring request to remove r-cran-fs which is not installed dpkg: warning: ignoring request to remove r-cran-futile.logger which is not installed dpkg: warning: ignoring request to remove r-cran-futile.options which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-glue which is not installed dpkg: warning: ignoring request to remove r-cran-here which is not installed dpkg: warning: ignoring request to remove r-cran-highr which is not installed dpkg: warning: ignoring request to remove r-cran-hms which is not installed dpkg: warning: ignoring request to remove r-cran-htmltools which is not installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which is not installed dpkg: warning: ignoring request to remove r-cran-httpuv which is not installed dpkg: warning: ignoring request to remove r-cran-igraph which is not installed dpkg: warning: ignoring request to remove r-cran-jquerylib which is not installed dpkg: warning: ignoring request to remove r-cran-jsonlite which is not installed dpkg: warning: ignoring request to remove r-cran-knitr which is not installed dpkg: warning: ignoring request to remove r-cran-labeling which is not installed dpkg: warning: ignoring request to remove r-cran-lambda.r which is not installed dpkg: warning: ignoring request to remove r-cran-later which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-lifecycle which is not installed dpkg: warning: ignoring request to remove r-cran-littler which is not installed dpkg: warning: ignoring request to remove r-cran-magrittr which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-memoise which is not installed dpkg: warning: ignoring request to remove r-cran-mime which is not installed dpkg: warning: ignoring request to remove r-cran-otel which is not installed dpkg: warning: ignoring request to remove r-cran-pillar which is not installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which is not installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which is not installed dpkg: warning: ignoring request to remove r-cran-png which is not installed dpkg: warning: ignoring request to remove r-cran-prettyunits which is not installed dpkg: warning: ignoring request to remove r-cran-progress which is not installed dpkg: warning: ignoring request to remove r-cran-promises which is not installed dpkg: warning: ignoring request to remove r-cran-purrr which is not installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which is not installed dpkg: warning: ignoring request to remove r-cran-r.oo which is not installed dpkg: warning: ignoring request to remove r-cran-r.utils which is not installed dpkg: warning: ignoring request to remove r-cran-r6 which is not installed dpkg: warning: ignoring request to remove r-cran-rappdirs which is not installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which is not installed dpkg: warning: ignoring request to remove r-cran-rcpp which is not installed dpkg: warning: ignoring request to remove r-cran-rcpptoml which is not installed dpkg: warning: ignoring request to remove r-cran-readr which is not installed dpkg: warning: ignoring request to remove r-cran-reticulate which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which is not installed dpkg: warning: ignoring request to remove r-cran-rprojroot which is not installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which is not installed dpkg: warning: ignoring request to remove r-cran-sass which is not installed dpkg: warning: ignoring request to remove r-cran-scales which is not installed dpkg: warning: ignoring request to remove r-cran-shiny which is not installed dpkg: warning: ignoring request to remove r-cran-snow which is not installed dpkg: warning: ignoring request to remove r-cran-sourcetools which is not installed dpkg: warning: ignoring request to remove r-cran-stringi which is not installed dpkg: warning: ignoring request to remove r-cran-stringr which is not installed dpkg: warning: ignoring request to remove r-cran-tibble which is not installed dpkg: warning: ignoring request to remove r-cran-tidyr which is not installed dpkg: warning: ignoring request to remove r-cran-tidyselect which is not installed dpkg: warning: ignoring request to remove r-cran-tinytex which is not installed dpkg: warning: ignoring request to remove r-cran-tzdb which is not installed dpkg: warning: ignoring request to remove r-cran-utf8 which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-cran-viridislite which is not installed dpkg: warning: ignoring request to remove r-cran-visnetwork which is not installed dpkg: warning: ignoring request to remove r-cran-vroom which is not installed dpkg: warning: ignoring request to remove r-cran-withr which is not installed dpkg: warning: ignoring request to remove r-cran-xfun which is not installed dpkg: warning: ignoring request to remove r-cran-xtable which is not installed dpkg: warning: ignoring request to remove r-cran-yaml which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove rpcsvc-proto which is not installed dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for wget (1.25.0-3) ... Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove xz-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed dpkg: warning: ignoring request to remove zlib1g-dev which is not installed 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'curl', 'cwl-upgrader', 'cwltool', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-15-base:amd64', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'graphviz', 'javascript-common', 'libabsl20260526:amd64', 'libamd3:amd64', 'libaom3:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libavif16:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.90-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcdt6:amd64', 'libcgraph8:amd64', 'libcolamd3:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi-dev:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgcc-15-dev:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgd3:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgvc7:amd64', 'libgvplugin-gd8:amd64', 'libgvplugin-pango8:amd64', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.4-0:amd64', 'liblzma-dev:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnspr4:amd64', 'libnspr4-dev', 'libnss3:amd64', 'libnss3-dev:amd64', 'libnuma1:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpathplan4:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0.8:amd64', 'libreadline-dev:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsqlite3-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-15-dev:amd64', 'libstdc++-16-dev:amd64', 'libsuitesparseconfig7:amd64', 'libsvtav1enc4:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxml2-dev:amd64', 'libxmlsec1-10310:amd64', 'libxmlsec1-dev', 'libxmlsec1-gnutls10310:amd64', 'libxmlsec1-nss10310:amd64', 'libxmlsec1-openssl10310:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'linux-libc-dev', 'make', 'media-types', 'netbase', 'nettle-dev:amd64', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.42', 'pyenv', 'pyenv-runtime', 'python3', 'python3-arcp', 'python3-argcomplete', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-coloredlogs', 'python3-cwl-utils', 'python3-dateutil', 'python3-filelock', 'python3-humanfriendly', 'python3-idna', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-markdown-it', 'python3-mdurl', 'python3-minimal', 'python3-mistune', 'python3-msgpack', 'python3-mypy-extensions', 'python3-networkx', 'python3-packaging', 'python3-prov', 'python3-psutil', 'python3-pydot', 'python3-pygments', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-rich', 'python3-rich-argparse', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib', 'python3-schema-salad', 'python3-spython', 'python3-typing-extensions', 'python3-uc-micro', 'python3-urllib3', 'python3.14', 'python3.14-minimal', 'r-base-core', 'r-bioc-basilisk', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-dir.expiry', 'r-bioc-s4vectors', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchtools', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-brew', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-checkmate', 'r-cran-cli', 'r-cran-clipr', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-data.table', 'r-cran-diagrammer', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-here', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-igraph', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-memoise', 'r-cran-mime', 'r-cran-otel', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r.utils', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpptoml', 'r-cran-readr', 'r-cran-reticulate', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-sass', 'r-cran-scales', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-visnetwork', 'r-cran-vroom', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xtable', 'r-cran-yaml', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'unzip', 'wget', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', 'r-bioc-rcwl'] 2m0.6s DUMP: dpkg: warning: ignoring request to remove r-bioc-rcwl which is not installed 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', 'r-bioc-rcwl'] 2m0.6s INFO: Running scripts post_purge 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_purge_exceptions'] 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_purge_exceptions'] 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_purge_manual_cleanup'] 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_purge_manual_cleanup'] 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', '--pending'] 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--purge', '--pending'] 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--remove', '--pending'] 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg', '--remove', '--pending'] 2m0.6s INFO: Running scripts post_test 2m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_test_exceptions'] 2m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'tmp/scripts/post_test_exceptions'] 2m0.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 2m0.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 2m1.2s DEBUG: No broken symlinks as far as we can find. 2m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-divert', '--list'] 2m1.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 2m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'dpkg-divert', '--list'] 2m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'clean'] 2m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpaqecvu60', 'apt-get', 'clean'] 2m1.3s DEBUG: Recording chroot state 2m3.1s INFO: PASS: Installation and purging test. 2m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/shm'] 2m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/shm'] 2m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/console'] 2m3.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/console'] 2m3.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/ptmx'] 2m3.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/ptmx'] 2m3.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/pts'] 2m3.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/dev/pts'] 2m3.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/proc'] 2m3.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpaqecvu60/proc'] 2m3.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 2m3.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpaqecvu60'] 2m3.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpaqecvu60 2m3.7s INFO: PASS: All tests. 2m3.7s INFO: piuparts run ends. ret=0 End: 2026-08-08 21:47:01 GMT