Start: 2024-03-30 11:18:35 GMT Package: racon Version: 1.5.0-3 Installed-Size: 3167 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.0), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 12), zlib1g (>= 1:1.1.4) Recommends: python3, rampler Description: consensus module for raw de novo DNA assembly of long uncorrected reads Homepage: https://github.com/lbcb-sci/racon Description-md5: 0245f53dd68b53cce76f4a5dd8d8a554 Section: science Priority: optional Filename: pool/main/r/racon/racon_1.5.0-3_amd64.deb Size: 3115248 MD5sum: 602de8da7f51b1ac954f76963f5399a6 SHA256: eba84b0023a9c8748a5fae490d259993f306b0d2e1b9c2efb89535d5458a9241 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt racon=1.5.0-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt racon=1.5.0-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpp63pqis8 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpp63pqis8 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpp63pqis8/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpp63pqis8/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'update'] 0m4.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9916 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7200 kB] Fetched 17.3 MB in 3s (5207 kB/s) Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libgnutls30t64 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1435 kB of archives. After this operation, 30.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.4-2 [1435 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1435 kB in 0s (23.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.4-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.4-2) over (3.8.3-1.1+b1) ... Setting up libgnutls30t64:amd64 (3.8.4-2) ... Processing triggers for libc-bin (2.37-15.1) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: 4061a8546edecf36ebcf28aad5f1fc2d - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_dummy_users'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_fake-essential'] 0m10.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.66). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 670 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 670 kB in 0s (14.4 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5218 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.22) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_fake-essential'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_forbid_home'] 0m10.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_forbid_home'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_minimize'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_minimize'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_zz_backports'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_setup_zz_backports'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'clean'] 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'clean'] 0m10.1s DEBUG: Recording chroot state 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.6s DUMP: install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-11 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240315-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.39.3-11 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-15.1 install ok installed libc6:amd64 libc6 2.37-15.1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240315-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.4-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0g:amd64 libpam0g 1.5.3-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-11 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.1.5-1.1 install ok installed libstdc++6:amd64 libstdc++6 14-20240315-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.39.3-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-11 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-divert', '--list'] 0m10.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-divert', '--list'] 0m10.6s INFO: Running scripts is_testable 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/is_testable_uninstallable'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/is_testable_uninstallable'] 0m10.6s INFO: apt-cache does not know about any of the requested packages 0m10.6s INFO: Running scripts pre_test 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_test_exceptions'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_test_exceptions'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_test_root_password'] 0m10.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_test_root_password'] 0m10.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m11.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m11.6s DEBUG: No broken symlinks as far as we can find. 0m11.6s INFO: Running scripts pre_install 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_database-server'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_database-server'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_exceptions'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_extras'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_extras'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'show', '--no-all-versions', 'racon=1.5.0-3'] 0m12.8s DUMP: Package: racon Version: 1.5.0-3 Installed-Size: 3167 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.0), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 12), zlib1g (>= 1:1.1.4) Recommends: python3, rampler Description-en: consensus module for raw de novo DNA assembly of long uncorrected reads Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step. The goal of Racon is to generate genomic consensus which is of similar or better quality compared to the output generated by assembly methods which employ both error correction and consensus steps, while providing a speedup of several times compared to those methods. It supports data produced by both Pacific Biosciences and Oxford Nanopore Technologies. . Racon can be used as a polishing tool after the assembly with either Illumina data or data produced by third generation of sequencing. The type of data inputed is automatically detected. . Racon takes as input only three files: contigs in FASTA/FASTQ format, reads in FASTA/FASTQ format and overlaps/alignments between the reads and the contigs in MHAP/PAF/SAM format. Output is a set of polished contigs in FASTA format printed to stdout. All input files can be compressed with gzip. . Racon can also be used as a read error-correction tool. In this scenario, the MHAP/PAF/SAM file needs to contain pairwise overlaps between reads including dual overlaps. . A wrapper script is also available to enable easier usage to the end- user for large datasets. It has the same interface as racon but adds two additional features from the outside. Sequences can be subsampled to decrease the total execution time (accuracy might be lower) while target sequences can be split into smaller chunks and run sequentially to decrease memory consumption. Both features can be run at the same time as well. Description-md5: 0245f53dd68b53cce76f4a5dd8d8a554 Homepage: https://github.com/lbcb-sci/racon Section: science Priority: optional Filename: pool/main/r/racon/racon_1.5.0-3_amd64.deb Size: 3115248 MD5sum: 602de8da7f51b1ac954f76963f5399a6 SHA256: eba84b0023a9c8748a5fae490d259993f306b0d2e1b9c2efb89535d5458a9241 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'show', '--no-all-versions', 'racon=1.5.0-3'] 0m12.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libc6 (>= 2.34), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.0), libspoa7.0.0 (>= 4.0.5), libstdc++6 (>= 12), zlib1g (>= 1:1.1.4) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m12.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpxlv6njs9/piuparts-depends-dummy'] 0m12.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpxlv6njs9/piuparts-depends-dummy.deb'. 0m12.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpxlv6njs9/piuparts-depends-dummy'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m12.8s DUMP: 2.7.14 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m12.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpxlv6njs9/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpp63pqis8/tmp 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m14.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libedlib1 libspoa7.0.0 The following NEW packages will be installed: libedlib1 libspoa7.0.0 piuparts-depends-dummy 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 88.0 kB/88.7 kB of archives. After this operation, 356 kB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [704 B] Get:2 http://deb.debian.org/debian sid/main amd64 libedlib1 amd64 1.2.7-5 [17.7 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libspoa7.0.0 amd64 4.1.4-1 [70.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.0 kB in 0s (1636 kB/s) Selecting previously unselected package libedlib1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5570 files and directories currently installed.) Preparing to unpack .../libedlib1_1.2.7-5_amd64.deb ... Unpacking libedlib1:amd64 (1.2.7-5) ... Selecting previously unselected package libspoa7.0.0:amd64. Preparing to unpack .../libspoa7.0.0_4.1.4-1_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.1.4-1) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../tmp/piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libspoa7.0.0:amd64 (4.1.4-1) ... Setting up libedlib1:amd64 (1.2.7-5) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m14.1s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m14.1s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpp63pqis8/./tmp/piuparts-depends-dummy.deb 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m14.2s DUMP: piuparts-depends-dummy install ok installed 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m14.2s DUMP: (Reading database ... 5579 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'clean'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'clean'] 0m14.2s DEBUG: Recording chroot state 0m14.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m15.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m15.5s DEBUG: No broken symlinks as far as we can find. 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy'] 0m16.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy', 'racon'] 0m16.5s DUMP: racon: Installed: (none) Candidate: 1.5.0-3 Version table: 1.5.0-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy', 'racon'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', 'install', 'racon=1.5.0-3'] 0m18.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: python3 rampler The following NEW packages will be installed: racon 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 3115 kB of archives. After this operation, 3243 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 racon amd64 1.5.0-3 [3115 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3115 kB in 1s (3574 kB/s) Selecting previously unselected package racon. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5579 files and directories currently installed.) Preparing to unpack .../racon_1.5.0-3_amd64.deb ... Unpacking racon (1.5.0-3) ... Setting up racon (1.5.0-3) ... 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', 'install', 'racon=1.5.0-3'] 0m18.4s INFO: Running scripts post_install 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_install_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_install_exceptions'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'remove', 'racon'] 0m19.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libedlib1 libspoa7.0.0 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: racon 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 3243 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5598 files and directories currently installed.) Removing racon (1.5.0-3) ... 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'remove', 'racon'] 0m19.4s INFO: Reinstalling after remove 0m19.4s INFO: Running scripts pre_install 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_database-server'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_database-server'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_exceptions'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_exceptions'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_extras'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_extras'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy'] 0m19.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy', 'racon'] 0m19.6s DUMP: racon: Installed: (none) Candidate: 1.5.0-3 Version table: 1.5.0-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy', 'racon'] 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', 'install', 'racon=1.5.0-3'] 0m20.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: python3 rampler The following NEW packages will be installed: racon debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/3115 kB of archives. After this operation, 3243 kB of additional disk space will be used. Selecting previously unselected package racon. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5579 files and directories currently installed.) Preparing to unpack .../racon_1.5.0-3_amd64.deb ... Unpacking racon (1.5.0-3) ... Setting up racon (1.5.0-3) ... 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', 'install', 'racon=1.5.0-3'] 0m20.8s INFO: Running scripts post_install 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_install_exceptions'] 0m20.8s INFO: Running scripts pre_install 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_database-server'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_database-server'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_exceptions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_exceptions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_extras'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_extras'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy'] 0m21.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy', 'racon'] 0m21.0s DUMP: racon: Installed: 1.5.0-3 Candidate: 1.5.0-3 Version table: *** 1.5.0-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-cache', 'policy', 'racon'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', 'install', '--reinstall', 'racon=1.5.0-3'] 0m22.2s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/3115 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5598 files and directories currently installed.) Preparing to unpack .../racon_1.5.0-3_amd64.deb ... Unpacking racon (1.5.0-3) over (1.5.0-3) ... Setting up racon (1.5.0-3) ... 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', '-y', 'install', '--reinstall', 'racon=1.5.0-3'] 0m22.2s INFO: Running scripts post_install 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_install_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_install_exceptions'] 0m22.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m22.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m23.0s DEBUG: No broken symlinks as far as we can find. 0m23.0s INFO: /bin converted to /usr/bin by /usr merge 0m23.0s INFO: /lib converted to /usr/lib by /usr merge 0m23.0s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m23.0s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m23.0s INFO: /sbin converted to /usr/sbin by /usr merge 0m23.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', '-ac', '--ignore-obsolete'] 0m24.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', '-ac', '--ignore-obsolete'] 0m24.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.0s DUMP: 0.15.6 0m24.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m24.0s INFO: Running adequate version 0.15.6 now. 0m24.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'racon'] 0m24.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'racon'] 0m24.1s INFO: Running scripts pre_remove 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_exceptions'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DUMP: install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-11 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240315-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.39.3-11 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-15.1 install ok installed libc6:amd64 libc6 2.37-15.1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libedlib1:amd64 libedlib1 1.2.7-5 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240315-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.4-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-11 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0g:amd64 libpam0g 1.5.3-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-11 install ok installed libspoa7.0.0:amd64 libspoa7.0.0 4.1.4-1 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.1.5-1.1 install ok installed libstdc++6:amd64 libstdc++6 14-20240315-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.39.3-11 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-11 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2 install ok installed racon racon 1.5.0-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-11 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'remove', 'libedlib1:amd64', 'libspoa7.0.0:amd64', 'racon'] 0m26.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libedlib1 libspoa7.0.0 racon 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. After this operation, 3599 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5598 files and directories currently installed.) Removing racon (1.5.0-3) ... Removing libedlib1:amd64 (1.2.7-5) ... Removing libspoa7.0.0:amd64 (4.1.4-1) ... Processing triggers for libc-bin (2.37-15.1) ... 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'remove', 'libedlib1:amd64', 'libspoa7.0.0:amd64', 'racon'] 0m26.0s INFO: Running scripts post_remove 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_remove_cleanup'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_remove_cleanup'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_remove_exceptions'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_remove_exceptions'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', 'libedlib1:amd64', 'libspoa7.0.0:amd64'] 0m26.0s DUMP: dpkg: warning: ignoring request to remove libedlib1 which isn't installed dpkg: warning: ignoring request to remove libspoa7.0.0 which isn't installed 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', 'libedlib1:amd64', 'libspoa7.0.0:amd64'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', 'racon'] 0m26.0s DUMP: dpkg: warning: ignoring request to remove racon which isn't installed 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', 'racon'] 0m26.0s INFO: Running scripts post_purge 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_purge_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_purge_exceptions'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_purge_manual_cleanup'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_purge_manual_cleanup'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', '--pending'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--purge', '--pending'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--remove', '--pending'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg', '--remove', '--pending'] 0m26.1s INFO: Running scripts post_test 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_test_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'tmp/scripts/post_test_exceptions'] 0m26.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m26.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m26.9s DEBUG: No broken symlinks as far as we can find. 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-divert', '--list'] 0m26.9s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'dpkg-divert', '--list'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'clean'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp63pqis8', 'apt-get', 'clean'] 0m26.9s DEBUG: Recording chroot state 0m27.6s INFO: PASS: Installation and purging test. 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/shm'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/shm'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/console'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/console'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/ptmx'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/ptmx'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/pts'] 0m28.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/dev/pts'] 0m28.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/proc'] 0m28.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp63pqis8/proc'] 0m28.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m28.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpp63pqis8'] 0m28.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpp63pqis8 0m28.3s INFO: PASS: All tests. 0m28.3s INFO: piuparts run ends. ret=0 End: 2024-03-30 11:19:04 GMT