Start: 2021-10-19 15:19:47 GMT Package: relion Version: 3.1.3-1 Installed-Size: 95937 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui Depends: openmpi-gcc | openmpi-bin, libc6 (>= 2.29), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libopenmpi3 (>= 4.1.2~rc1), libstdc++6 (>= 11), libtiff5 (>= 4.0.3) Conflicts: relion-cuda Breaks: relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui Description: toolkit for 3D reconstructions in cryo-electron microscopy Homepage: https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Description-md5: a54d8123a50edf0f9102f8a3c05de97f Section: science Priority: optional Filename: pool/main/r/relion/relion_3.1.3-1_amd64.deb Size: 14987520 MD5sum: fdcee6edd7814d639b0f419e570580d8 SHA256: 380a7674f709fea1863e6009260ea0ec3d26e26cfe8d37d3771a8d6bf802de55 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt relion=3.1.3-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.4 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt relion=3.1.3-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-18-amd64 #1 SMP Debian 4.19.208-1 (2021-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6xhvoasy 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6xhvoasy 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6xhvoasy/tmp/scripts/ 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp6xhvoasy/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'update'] 0m5.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [165 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [8777 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6576 kB] Fetched 15.5 MB in 3s (5931 kB/s) Reading package lists... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'update'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-yf', 'dist-upgrade'] 0m7.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2529 kB of archives. After this operation, 14.3 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.3.10 [1025 kB] Get:2 http://deb.debian.org/debian sid/main amd64 apt amd64 2.3.10 [1505 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2529 kB in 0s (34.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.10_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.10) over (2.3.9) ... Setting up libapt-pkg6.0:amd64 (2.3.10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6661 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.10_amd64.deb ... Unpacking apt (2.3.10) over (2.3.9) ... Setting up apt (2.3.10) ... Processing triggers for libc-bin (2.32-4) ... 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-yf', 'dist-upgrade'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.0s DUMP: ab8759d0ca87198bb321c99cacad4071 - 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.0s INFO: Running scripts post_setup 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_dummy_users'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_fake-essential'] 0m9.8s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.60). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 708 kB of archives. After this operation, 1861 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.20 [613 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 708 kB in 0s (14.1 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6662 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.20_all.deb ... Unpacking dbconfig-common (2.0.20) ... Setting up sensible-utils (0.0.17) ... Setting up ucf (3.0043) ... Setting up dbconfig-common (2.0.20) ... Creating config file /etc/dbconfig-common/config with new version 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_fake-essential'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_forbid_home'] 0m9.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_forbid_home'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_minimize'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_minimize'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_zz_backports'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_setup_zz_backports'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'clean'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'clean'] 0m9.9s DEBUG: Recording chroot state 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.10 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-3+b2 install ok installed bsdutils bsdutils 1:2.37.2-3 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed dbconfig-common dbconfig-common 2.0.20 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-11 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-9 install ok installed gcc-9-base:amd64 gcc-9-base 9.4.0-3 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.10 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmount1:amd64 libmount1 2.37.2-3 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.2-2 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-3 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 249.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20210905-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libudev1:amd64 libudev1 249.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-3 install ok installed ncurses-base ncurses-base 6.2+20210905-1 install ok installed ncurses-bin ncurses-bin 6.2+20210905-1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-6 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021d-1 install ok installed ucf ucf 3.0043 install ok installed util-linux util-linux 2.37.2-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-divert', '--list'] 0m10.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-divert', '--list'] 0m10.2s INFO: Running scripts is_testable 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/is_testable_uninstallable'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/is_testable_uninstallable'] 0m10.2s INFO: apt-cache does not know about any of the requested packages 0m10.2s INFO: Running scripts pre_test 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_test_exceptions'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_test_exceptions'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_test_root_password'] 0m10.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_test_root_password'] 0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m10.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m11.0s ERROR: WARN: Broken symlinks: /etc/systemd/system/timers.target.wants/apt-daily.timer -> /usr/lib/systemd/system/apt-daily.timer /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer -> /usr/lib/systemd/system/apt-daily-upgrade.timer 0m11.0s INFO: Running scripts pre_install 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_database-server'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_database-server'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_exceptions'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_exceptions'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_extras'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_extras'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'show', '--no-all-versions', 'relion=3.1.3-1'] 0m11.9s DUMP: Package: relion Version: 3.1.3-1 Installed-Size: 95937 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui Depends: openmpi-gcc | openmpi-bin, libc6 (>= 2.29), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libopenmpi3 (>= 4.1.2~rc1), libstdc++6 (>= 11), libtiff5 (>= 4.0.3) Conflicts: relion-cuda Breaks: relion-bin, relion-bin+gui, relion-bin+mpi, relion-bin+mpi+gui Description-en: toolkit for 3D reconstructions in cryo-electron microscopy RELION (for REgularised LIkelihood OptimisatioN) is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy. . RELION provides a GUI, several command-line tools in parallel (MPI) and serial versions, optionally with CUDA/GPU support. . relion provides the serial and parallel (MPI) command-line tools without CUDA/GPU support. Description-md5: a54d8123a50edf0f9102f8a3c05de97f Homepage: https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Section: science Priority: optional Filename: pool/main/r/relion/relion_3.1.3-1_amd64.deb Size: 14987520 MD5sum: fdcee6edd7814d639b0f419e570580d8 SHA256: 380a7674f709fea1863e6009260ea0ec3d26e26cfe8d37d3771a8d6bf802de55 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'show', '--no-all-versions', 'relion=3.1.3-1'] 0m11.9s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: openmpi-gcc | openmpi-bin, libc6 (>= 2.29), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libopenmpi3 (>= 4.1.2~rc1), libstdc++6 (>= 11), libtiff5 (>= 4.0.3) Conflicts: relion-cuda Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m11.9s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprcy93lxu/piuparts-depends-dummy'] 0m11.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmprcy93lxu/piuparts-depends-dummy.deb'. 0m11.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprcy93lxu/piuparts-depends-dummy'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.9s DUMP: 2.3.10 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmprcy93lxu/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp6xhvoasy/tmp 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m16.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ibverbs-providers libbsd0 libcbor0.8 libdeflate0 libedit2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3 libfido2-1 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libjbig0 libjpeg62-turbo libmd0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libtiff5 libucx0 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client Suggested packages: libfftw3-bin libfftw3-dev libhwloc-contrib-plugins pciutils opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass Recommended packages: xauth The following NEW packages will be installed: ibverbs-providers libbsd0 libcbor0.8 libdeflate0 libedit2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3 libfido2-1 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libjbig0 libjpeg62-turbo libmd0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libtiff5 libucx0 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client piuparts-depends-dummy 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 20.5 MB/20.5 MB of archives. After this operation, 73.1 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [748 B] Get:2 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.0.4-1 [29.6 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libcbor0.8 amd64 0.8.0-1 [27.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libfido2-1 amd64 1.8.0-1+b1 [63.4 kB] Get:7 http://deb.debian.org/debian sid/main amd64 openssh-client amd64 1:8.4p1-6 [929 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 36.0-1 [60.3 kB] Get:11 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 36.0-1 [275 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.8-1 [53.1 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.14-3 [24.4 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:18 http://deb.debian.org/debian sid/main amd64 librdmacm1 amd64 36.0-1 [69.1 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 11.2.0-9 [106 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.7.2-2 [311 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.7.2-2+b1 [772 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.12+dfsg-5 [696 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 470.57.02-2 [27.1 kB] Get:33 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.14-3 [42.6 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.5.0+dfsg-2 [154 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.5.0+dfsg-2 [21.6 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libpmix2 amd64 4.1.1~rc4-1 [572 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.11.2-1 [765 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libopenmpi3 amd64 4.1.2~rc1-4 [2388 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libtiff5 amd64 4.3.0-2 [294 kB] Get:43 http://deb.debian.org/debian sid/main amd64 openmpi-common all 4.1.2~rc1-4 [183 kB] Get:44 http://deb.debian.org/debian sid/main amd64 openmpi-bin amd64 4.1.2~rc1-4 [241 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.5 MB in 0s (86.1 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7011 files and directories currently installed.) Preparing to unpack .../00-libmd0_1.0.4-1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20210910-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1) ... Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../03-libcbor0.8_0.8.0-1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../04-libfido2-1_1.8.0-1+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.8.0-1+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../05-openssh-client_1%3a8.4p1-6_amd64.deb ... Unpacking openssh-client (1:8.4p1-6) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../06-libnl-3-200_3.4.0-1+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../07-libnl-route-3-200_3.4.0-1+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../08-libibverbs1_36.0-1_amd64.deb ... Unpacking libibverbs1:amd64 (36.0-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../09-ibverbs-providers_36.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (36.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../10-libdeflate0_1.8-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.8-1) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../11-libevent-core-2.1-7_2.1.12-stable-1_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../12-libevent-pthreads-2.1-7_2.1.12-stable-1_amd64.deb ... Unpacking libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../13-libpsm-infinipath1_3.3+20.604758e7-6.1_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../14-libnuma1_2.0.14-3_amd64.deb ... Unpacking libnuma1:amd64 (2.0.14-3) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../15-libpsm2-2_11.2.185-1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-1) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../16-librdmacm1_36.0-1_amd64.deb ... Unpacking librdmacm1:amd64 (36.0-1) ... Selecting previously unselected package libfabric1. Preparing to unpack .../17-libfabric1_1.11.0-2_amd64.deb ... Unpacking libfabric1 (1.11.0-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../18-libgomp1_11.2.0-9_amd64.deb ... Unpacking libgomp1:amd64 (11.2.0-9) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../19-libfftw3-double3_3.3.8-2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.8-2) ... 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Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../32-libhwloc15_2.5.0+dfsg-2_amd64.deb ... Unpacking libhwloc15:amd64 (2.5.0+dfsg-2) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../33-libhwloc-plugins_2.5.0+dfsg-2_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.5.0+dfsg-2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../34-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../35-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../36-libpmix2_4.1.1~rc4-1_amd64.deb ... Unpacking libpmix2:amd64 (4.1.1~rc4-1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../37-libucx0_1.11.2-1_amd64.deb ... Unpacking libucx0:amd64 (1.11.2-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../38-libopenmpi3_4.1.2~rc1-4_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.2~rc1-4) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../39-libwebp6_0.6.1-2.1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../40-libtiff5_4.3.0-2_amd64.deb ... Unpacking libtiff5:amd64 (4.3.0-2) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../41-openmpi-common_4.1.2~rc1-4_all.deb ... Unpacking openmpi-common (4.1.2~rc1-4) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../42-openmpi-bin_4.1.2~rc1-4_amd64.deb ... Unpacking openmpi-bin (4.1.2~rc1-4) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../43-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libcbor0.8:amd64 (0.8.0-1) ... Setting up libdeflate0:amd64 (1.8-1) ... Setting up libgomp1:amd64 (11.2.0-9) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-2) ... Setting up libhwloc15:amd64 (2.5.0+dfsg-2) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libnuma1:amd64 (2.0.14-3) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-3) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.2~rc1-4) ... Setting up libtiff5:amd64 (4.3.0-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.8.0-1+b1) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libx11-6:amd64 (2:1.7.2-2+b1) ... Setting up libibverbs1:amd64 (36.0-1) ... Setting up ibverbs-providers:amd64 (36.0-1) ... Setting up openssh-client (1:8.4p1-6) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libxnvctrl0:amd64 (470.57.02-2) ... Setting up librdmacm1:amd64 (36.0-1) ... Setting up libucx0:amd64 (1.11.2-1) ... Setting up libhwloc-plugins:amd64 (2.5.0+dfsg-2) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpmix2:amd64 (4.1.1~rc4-1) ... Setting up libopenmpi3:amd64 (4.1.2~rc1-4) ... Setting up openmpi-bin (4.1.2~rc1-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-4) ... 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m16.0s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m16.0s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp6xhvoasy/./tmp/piuparts-depends-dummy.deb 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m16.0s DUMP: piuparts-depends-dummy install ok installed 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m16.0s DUMP: (Reading database ... 8071 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'clean'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'clean'] 0m16.0s DEBUG: Recording chroot state 0m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m17.5s ERROR: WARN: Broken symlinks: /usr/lib/x86_64-linux-gnu/libopen-orted-mpir.so -> openmpi/lib/libopen-orted-mpir.so /usr/share/doc/libucx0/README -> README.md /etc/systemd/system/timers.target.wants/apt-daily.timer -> /usr/lib/systemd/system/apt-daily.timer /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer -> /usr/lib/systemd/system/apt-daily-upgrade.timer 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy'] 0m18.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy', 'relion'] 0m18.3s DUMP: relion: Installed: (none) Candidate: 3.1.3-1 Version table: 3.1.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy', 'relion'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', 'install', 'relion=3.1.3-1'] 0m21.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: relion 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 15.0 MB of archives. After this operation, 98.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 relion amd64 3.1.3-1 [15.0 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.0 MB in 0s (68.9 MB/s) Selecting previously unselected package relion. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8071 files and directories currently installed.) Preparing to unpack .../relion_3.1.3-1_amd64.deb ... Unpacking relion (3.1.3-1) ... Setting up relion (3.1.3-1) ... Processing triggers for libc-bin (2.32-4) ... 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', 'install', 'relion=3.1.3-1'] 0m21.0s INFO: Running scripts post_install 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_install_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_install_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'remove', 'relion'] 0m21.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ibverbs-providers libbsd0 libcbor0.8 libdeflate0 libedit2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3 libfido2-1 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libjbig0 libjpeg62-turbo libmd0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libtiff5 libucx0 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: relion 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 98.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8138 files and directories currently installed.) Removing relion (3.1.3-1) ... Processing triggers for libc-bin (2.32-4) ... 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'remove', 'relion'] 0m21.8s INFO: Reinstalling after remove 0m21.8s INFO: Running scripts pre_install 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_database-server'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_database-server'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_exceptions'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_exceptions'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_extras'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_extras'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy'] 0m21.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy', 'relion'] 0m21.9s DUMP: relion: Installed: (none) Candidate: 3.1.3-1 Version table: 3.1.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy', 'relion'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', 'install', 'relion=3.1.3-1'] 0m24.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: relion debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/15.0 MB of archives. After this operation, 98.2 MB of additional disk space will be used. Selecting previously unselected package relion. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8071 files and directories currently installed.) Preparing to unpack .../relion_3.1.3-1_amd64.deb ... Unpacking relion (3.1.3-1) ... Setting up relion (3.1.3-1) ... Processing triggers for libc-bin (2.32-4) ... 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', 'install', 'relion=3.1.3-1'] 0m24.3s INFO: Running scripts post_install 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_install_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_install_exceptions'] 0m24.3s INFO: Running scripts pre_install 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_database-server'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_database-server'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_exceptions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_extras'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy'] 0m24.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy', 'relion'] 0m24.4s DUMP: relion: Installed: 3.1.3-1 Candidate: 3.1.3-1 Version table: *** 3.1.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-cache', 'policy', 'relion'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', 'install', '--reinstall', 'relion=3.1.3-1'] 0m26.8s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/15.0 MB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8138 files and directories currently installed.) Preparing to unpack .../relion_3.1.3-1_amd64.deb ... Unpacking relion (3.1.3-1) over (3.1.3-1) ... Setting up relion (3.1.3-1) ... Processing triggers for libc-bin (2.32-4) ... 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', '-y', 'install', '--reinstall', 'relion=3.1.3-1'] 0m26.8s INFO: Running scripts post_install 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_install_exceptions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_install_exceptions'] 0m26.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m27.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m28.0s ERROR: WARN: Broken symlinks: /usr/lib/x86_64-linux-gnu/libopen-orted-mpir.so -> openmpi/lib/libopen-orted-mpir.so (libopenmpi3:amd64) /usr/share/doc/libucx0/README -> README.md (libucx0:amd64) /etc/systemd/system/timers.target.wants/apt-daily.timer -> /usr/lib/systemd/system/apt-daily.timer /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer -> /usr/lib/systemd/system/apt-daily-upgrade.timer 0m28.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', '-ac', '--ignore-obsolete'] 0m29.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', '-ac', '--ignore-obsolete'] 0m29.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.5s DUMP: 0.15.2 0m29.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.5s INFO: Running adequate version 0.15.2 now. 0m29.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'relion'] 0m30.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'relion'] 0m30.1s INFO: Running scripts pre_remove 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_exceptions'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_exceptions'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.3.10 install ok installed base-files base-files 12 install ok installed base-passwd base-passwd 3.5.52 install ok installed bash bash 5.1-3+b2 install ok installed bsdutils bsdutils 1:2.37.2-3 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20210120+802ebd4-1 install ok installed dbconfig-common dbconfig-common 2.0.20 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.5-1 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.9 install ok installed e2fsprogs e2fsprogs 1.46.4-1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.3.0-11 install ok installed gcc-11-base:amd64 gcc-11-base 11.2.0-9 install ok installed gcc-9-base:amd64 gcc-9-base 9.4.0-3 install ok installed gpgv gpgv 2.2.27-2 install ok installed grep grep 3.7-1 install ok installed gzip gzip 1.10-4 install ok installed hostname hostname 3.23 install ok installed ibverbs-providers:amd64 ibverbs-providers 36.0-1 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.3.10 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.6-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.6-1 install ok installed libblkid1:amd64 libblkid1 2.37.2-3 install ok installed libbsd0:amd64 libbsd0 0.11.3-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.32-4 install ok installed libc6:amd64 libc6 2.32-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcbor0.8:amd64 libcbor0.8 0.8.0-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.25-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.8-1 install ok installed libedit2:amd64 libedit2 3.1-20210910-1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.4-1 install ok installed libfabric1 libfabric1 1.11.0-2 install ok installed libffi8:amd64 libffi8 3.4.2-3 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.8-2 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.8-2 install ok installed libfido2-1:amd64 libfido2-1 1.8.0-1+b1 install ok installed libgcc-s1:amd64 libgcc-s1 11.2.0-9 install ok installed libgcrypt20:amd64 libgcrypt20 1.9.4-3+b1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.7.2-2 install ok installed libgomp1:amd64 libgomp1 11.2.0-9 install ok installed libgpg-error0:amd64 libgpg-error0 1.42-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-7 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.5.0+dfsg-2 install ok installed libhwloc15:amd64 libhwloc15 2.5.0+dfsg-2 install ok installed libibverbs1:amd64 libibverbs1 36.0-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.2-2 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-7 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-7 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2 install ok installed libmd0:amd64 libmd0 1.0.4-1 install ok installed libmount1:amd64 libmount1 2.37.2-3 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.14-3 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.2~rc1-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.0-5 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-10 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-10 install ok installed libpam-runtime libpam-runtime 1.4.0-10 install ok installed libpam0g:amd64 libpam0g 1.4.0-10 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpmix2:amd64 libpmix2 4.1.1~rc4-1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.1 install ok installed libpsm2-2 libpsm2-2 11.2.185-1 install ok installed librdmacm1:amd64 librdmacm1 36.0-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.2-2 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.37.2-3 install ok installed libss2:amd64 libss2 1.46.4-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1l-1 install ok installed libstdc++6:amd64 libstdc++6 11.2.0-9 install ok installed libsystemd0:amd64 libsystemd0 249.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.17.0-2 install ok installed libtiff5:amd64 libtiff5 4.3.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20210905-1 install ok installed libtirpc-common libtirpc-common 1.3.2-2 install ok installed libtirpc3:amd64 libtirpc3 1.3.2-2 install ok installed libucx0:amd64 libucx0 1.11.2-1 install ok installed libudev1:amd64 libudev1 249.5-1 install ok installed libunistring2:amd64 libunistring2 0.9.10-6 install ok installed libuuid1:amd64 libuuid1 2.37.2-3 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-2+b1 install ok installed libx11-data libx11-data 2:1.7.2-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1 install ok installed libxml2:amd64 libxml2 2.9.12+dfsg-5 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.57.02-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-3 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.4-1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.37.2-3 install ok installed ncurses-base ncurses-base 6.2+20210905-1 install ok installed ncurses-bin ncurses-bin 6.2+20210905-1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-3 install ok installed openmpi-bin openmpi-bin 4.1.2~rc1-4 install ok installed openmpi-common openmpi-common 4.1.2~rc1-4 install ok installed openssh-client openssh-client 1:8.4p1-6 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-6 install ok installed relion relion 3.1.3-1 install ok installed sed sed 4.8-1 install ok installed sensible-utils sensible-utils 0.0.17 install ok installed sysvinit-utils sysvinit-utils 3.00-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021d-1 install ok installed ucf ucf 3.0043 install ok installed util-linux util-linux 2.37.2-3 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2 0m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libcbor0.8:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'relion'] 0m32.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ibverbs-providers libbsd0 libcbor0.8 libdeflate0 libedit2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3 libfido2-1 libgomp1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libjbig0 libjpeg62-turbo libmd0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libtiff5 libucx0 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client relion 0 upgraded, 0 newly installed, 44 to remove and 0 not upgraded. After this operation, 171 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8138 files and directories currently installed.) Removing relion (3.1.3-1) ... Removing openmpi-bin (4.1.2~rc1-4) ... Removing libopenmpi3:amd64 (4.1.2~rc1-4) ... Removing libucx0:amd64 (1.11.2-1) ... Removing libfabric1 (1.11.0-2) ... Removing ibverbs-providers:amd64 (36.0-1) ... Removing libpmix2:amd64 (4.1.1~rc4-1) ... Removing libhwloc-plugins:amd64 (2.5.0+dfsg-2) ... Removing libxnvctrl0:amd64 (470.57.02-2) ... Removing libxext6:amd64 (2:1.3.4-1) ... Removing libx11-6:amd64 (2:1.7.2-2+b1) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing openssh-client (1:8.4p1-6) ... Removing libedit2:amd64 (3.1-20210910-1) ... Removing libbsd0:amd64 (0.11.3-1) ... Removing libfido2-1:amd64 (1.8.0-1+b1) ... Removing libcbor0.8:amd64 (0.8.0-1) ... Removing libtiff5:amd64 (4.3.0-2) ... Removing libdeflate0:amd64 (1.8-1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfftw3-single3:amd64 (3.3.8-2) ... Removing libgomp1:amd64 (11.2.0-9) ... Removing libhwloc15:amd64 (2.5.0+dfsg-2) ... Removing librdmacm1:amd64 (36.0-1) ... Removing libibverbs1:amd64 (36.0-1) ... Removing libxml2:amd64 (2.9.12+dfsg-5) ... Removing libicu67:amd64 (67.1-7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libmd0:amd64 (1.0.4-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing libpsm2-2 (11.2.185-1) ... Removing libnuma1:amd64 (2.0.14-3) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libwebp6:amd64 (0.6.1-2.1) ... Removing libx11-data (2:1.7.2-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ocl-icd-libopencl1:amd64 (2.2.14-3) ... Removing openmpi-common (4.1.2~rc1-4) ... Processing triggers for libc-bin (2.32-4) ... 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libcbor0.8:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'relion'] 0m32.5s INFO: Running scripts post_remove 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_remove_cleanup'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_remove_cleanup'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_remove_exceptions'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_remove_exceptions'] 0m32.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libcbor0.8:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client'] 0m32.6s DUMP: (Reading database ... 7036 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (36.0-1) ... dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcbor0.8 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.1) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (4.1.2~rc1-4) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:8.4p1-6) ... 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libcbor0.8:amd64', 'libdeflate0:amd64', 'libedit2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libgomp1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libtiff5:amd64', 'libucx0:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client'] 0m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', 'relion'] 0m32.6s DUMP: dpkg: warning: ignoring request to remove relion which isn't installed 0m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', 'relion'] 0m32.6s INFO: Running scripts post_purge 0m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_purge_exceptions'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_purge_exceptions'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_purge_manual_cleanup'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_purge_manual_cleanup'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', '--pending'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--purge', '--pending'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--remove', '--pending'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg', '--remove', '--pending'] 0m32.7s INFO: Running scripts post_test 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_test_exceptions'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'tmp/scripts/post_test_exceptions'] 0m32.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m32.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m33.4s ERROR: WARN: Broken symlinks: /etc/systemd/system/timers.target.wants/apt-daily.timer -> /usr/lib/systemd/system/apt-daily.timer /etc/systemd/system/timers.target.wants/apt-daily-upgrade.timer -> /usr/lib/systemd/system/apt-daily-upgrade.timer 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-divert', '--list'] 0m33.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'dpkg-divert', '--list'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'clean'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy', 'apt-get', 'clean'] 0m33.5s DEBUG: Recording chroot state 0m33.9s INFO: PASS: Installation and purging test. 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/shm'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/shm'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/console'] 0m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/console'] 0m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/ptmx'] 0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/ptmx'] 0m34.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/pts'] 0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/dev/pts'] 0m34.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/proc'] 0m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy/proc'] 0m34.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m34.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6xhvoasy'] 0m34.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6xhvoasy 0m34.4s INFO: PASS: All tests. 0m34.4s INFO: piuparts run ends. ret=0 End: 2021-10-19 15:20:22 GMT