Start: 2025-03-17 14:00:21 GMT Package: ruby-crb-blast Version: 0.6.9-5 Installed-Size: 52 Maintainer: Debian Ruby Team Architecture: all Depends: ncbi-blast+, ruby, ruby-trollop (>= 2.0), ruby-bio (>= 2.0), ruby-fixwhich (>= 1.0.2), ruby-threach (>= 0.2.0) Description: Run conditional reciprocal best blast Homepage: https://github.com/cboursnell/crb-blast Description-md5: b8694674f553b0ae33fd1ec67da3861a Section: ruby Priority: optional Filename: pool/main/r/ruby-crb-blast/ruby-crb-blast_0.6.9-5_all.deb Size: 12108 MD5sum: 4667cab5c159a646ef7a153645d6e9e3 SHA256: 76c83dbcd59fe7144aec6d69d73d1ffd2dd54ba188ebf357b7f66637a05d25f7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt ruby-crb-blast=0.6.9-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt ruby-crb-blast=0.6.9-5 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2elwtn7e 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2elwtn7e 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2elwtn7e/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp2elwtn7e/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7385 kB] Fetched 17.7 MB in 1s (11.9 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-yf', 'dist-upgrade'] 0m3.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-14-base libgcc-s1 libselinux1 libsemanage-common libsemanage2 libsepol2 libstdc++6 login.defs passwd 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2733 kB of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:5 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.17.3-2 [186 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:7 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:9 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.17.3-2 [1228 kB] Fetched 2733 kB in 0s (33.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-19_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-19) over (14.2.0-18) ... Setting up gcc-14-base:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-19_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-19) over (14.2.0-18) ... Setting up libstdc++6:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-19_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-19) over (14.2.0-18) ... Setting up libgcc-s1:amd64 (14.2.0-19) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) over (3.8-4) ... Setting up libselinux1:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.3-2_all.deb ... Unpacking login.defs (1:4.17.3-2) over (1:4.17.3-1) ... Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... Unpacking libsemanage-common (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsemanage2_3.8.1-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8.1-1) over (3.8-1+b1) ... Preparing to unpack .../passwd_1%3a4.17.3-2_amd64.deb ... Unpacking passwd (1:4.17.3-2) over (1:4.17.3-1) ... Setting up login.defs (1:4.17.3-2) ... Setting up libsemanage-common (3.8.1-1) ... Setting up libsepol2:amd64 (3.8.1-1) ... Setting up libsemanage2:amd64 (3.8.1-1) ... Setting up passwd (1:4.17.3-2) ... Processing triggers for libc-bin (2.41-6) ... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-yf', 'dist-upgrade'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s DUMP: 0582dbe94023bf6cf8b7d535b964b205 - 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.2s INFO: Running scripts post_setup 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_fake-essential'] 0m4.4s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.68). The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1757 kB of archives. After this operation, 4946 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0050 [42.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] Preconfiguring packages ... Fetched 1757 kB in 0s (24.6 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4907 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0050_all.deb ... Moving old data out of the way Unpacking ucf (3.0050) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.24) ... Setting up procps (2:4.0.4-7) ... Setting up ucf (3.0050) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-6) ... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_fake-essential'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'clean'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'clean'] 0m4.4s DEBUG: Recording chroot state 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-divert', '--list'] 0m4.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-divert', '--list'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: apt-cache does not know about any of the requested packages 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'show', '--no-all-versions', 'ruby-crb-blast=0.6.9-5'] 0m5.6s DUMP: Package: ruby-crb-blast Version: 0.6.9-5 Installed-Size: 52 Maintainer: Debian Ruby Team Architecture: all Depends: ncbi-blast+, ruby, ruby-trollop (>= 2.0), ruby-bio (>= 2.0), ruby-fixwhich (>= 1.0.2), ruby-threach (>= 0.2.0) Description-en: Run conditional reciprocal best blast CRB-BLAST is a novel method for finding orthologs between one set of sequences and another. This is particularly useful in genome and transcriptome annotation. . CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by performing BLAST alignments of query->target and target->query. Reciprocal best BLAST hits are those where the best match for any given query sequence in the query->target alignment is also the best hit of the match in the reverse (target->query) alignment. . Reciprocal best BLAST is a very conservative way to assign orthologs. The main innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to each pairwise alignment by taking into account the overall relatedness of the two datasets being compared. This is done by fitting a function to the distribution of alignment e-values over sequence lengths. The function provides the e-value cutoff for a sequence of given length. Description-md5: b8694674f553b0ae33fd1ec67da3861a Homepage: https://github.com/cboursnell/crb-blast Section: ruby Priority: optional Filename: pool/main/r/ruby-crb-blast/ruby-crb-blast_0.6.9-5_all.deb Size: 12108 MD5sum: 4667cab5c159a646ef7a153645d6e9e3 SHA256: 76c83dbcd59fe7144aec6d69d73d1ffd2dd54ba188ebf357b7f66637a05d25f7 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'show', '--no-all-versions', 'ruby-crb-blast=0.6.9-5'] 0m5.6s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Depends: ncbi-blast+, ruby, ruby-trollop (>= 2.0), ruby-bio (>= 2.0), ruby-fixwhich (>= 1.0.2), ruby-threach (>= 0.2.0) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m5.6s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpwdv7pbm2/piuparts-depends-dummy'] 0m5.6s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpwdv7pbm2/piuparts-depends-dummy.deb'. 0m5.6s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpwdv7pbm2/piuparts-depends-dummy'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.7s DUMP: 2.9.33 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.7s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpwdv7pbm2/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp2elwtn7e/tmp 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m12.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsqlite3-0 libuv1t64 libyaml-0-2 media-types ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-bio ruby-did-you-mean ruby-facade ruby-fixwhich ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-rubygems ruby-test-unit ruby-threach ruby-trollop ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration Suggested packages: gdbm-l10n perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils binfmt-support readline-doc ri ruby-dev clustalw emboss bundler Recommended packages: ruby-sdbm zip blast2 hmmer mafft muscle probcons sim4 t-coffee fonts-lato libjs-jquery The following NEW packages will be installed: ca-certificates libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsqlite3-0 libuv1t64 libyaml-0-2 media-types ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.40 piuparts-depends-dummy python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-bio ruby-did-you-mean ruby-facade ruby-fixwhich ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-rubygems ruby-test-unit ruby-threach ruby-trollop ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 45.0 MB/45.0 MB of archives. After this operation, 214 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [688 B] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get:17 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:18 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-2 [4315 kB] Get:22 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-2 [267 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:24 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:29 http://deb.debian.org/debian sid/main amd64 rubygems-integration all 1.19 [5488 B] Get:30 http://deb.debian.org/debian sid/main amd64 ruby3.3 amd64 3.3.7-1 [827 kB] Get:31 http://deb.debian.org/debian sid/main amd64 ruby-rubygems all 3.6.3-1 [406 kB] Get:32 http://deb.debian.org/debian sid/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get:33 http://deb.debian.org/debian sid/main amd64 rake all 13.2.1-1 [65.2 kB] Get:34 http://deb.debian.org/debian sid/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get:35 http://deb.debian.org/debian sid/main amd64 ruby-minitest all 5.25.4-2 [66.2 kB] Get:36 http://deb.debian.org/debian sid/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:37 http://deb.debian.org/debian sid/main amd64 ruby-power-assert all 2.0.3-1 [11.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 ruby-test-unit all 3.6.2-1 [79.1 kB] Get:39 http://deb.debian.org/debian sid/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get:40 http://deb.debian.org/debian sid/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libruby3.3 amd64 3.3.7-1 [6274 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get:44 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:45 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get:46 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get:47 http://deb.debian.org/debian sid/main amd64 ruby-bio all 2.0.5-1 [657 kB] Get:48 http://deb.debian.org/debian sid/main amd64 ruby-facade all 1.2.1-1 [8996 B] Get:49 http://deb.debian.org/debian sid/main amd64 ruby-pathname2 all 1.8.2-2 [17.9 kB] Get:50 http://deb.debian.org/debian sid/main amd64 ruby-fixwhich all 1.0.2-2 [4284 B] Get:51 http://deb.debian.org/debian sid/main amd64 ruby-threach all 0.2.0-2 [5320 B] Get:52 http://deb.debian.org/debian sid/main amd64 ruby-trollop all 2.0-2.1 [17.0 kB] Preconfiguring packages ... Fetched 45.0 MB in 2s (20.9 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5455 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.0-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_amd64.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... Setting up libexpat1:amd64 (2.7.0-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5789 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.46.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-2) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-2_amd64.deb ... Unpacking python3.13 (3.13.2-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6291 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.4.1-1_amd64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../03-perl-modules-5.40_5.40.1-2_all.deb ... Unpacking perl-modules-5.40 (5.40.1-2) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../04-libgdbm6t64_1.24-2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.24-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../05-libgdbm-compat4t64_1.24-2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.24-2) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../06-libperl5.40_5.40.1-2_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-2) ... Selecting previously unselected package perl. Preparing to unpack .../07-perl_5.40.1-2_amd64.deb ... Unpacking perl (5.40.1-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../08-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../09-liblmdb0_0.9.31-1+b2_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../10-libmbedcrypto16_3.6.2-3_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.2-3) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../11-libmbedx509-7_3.6.2-3_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.2-3) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../12-libmbedtls21_3.6.2-3_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.2-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../13-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../14-rubygems-integration_1.19_all.deb ... Unpacking rubygems-integration (1.19) ... Selecting previously unselected package ruby3.3. Preparing to unpack .../15-ruby3.3_3.3.7-1_amd64.deb ... Unpacking ruby3.3 (3.3.7-1) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../16-ruby-rubygems_3.6.3-1_all.deb ... Unpacking ruby-rubygems (3.6.3-1) ... Selecting previously unselected package ruby. Preparing to unpack .../17-ruby_1%3a3.3+b1_amd64.deb ... Unpacking ruby (1:3.3+b1) ... Selecting previously unselected package rake. Preparing to unpack .../18-rake_13.2.1-1_all.deb ... Unpacking rake (13.2.1-1) ... Selecting previously unselected package ruby-did-you-mean. Preparing to unpack .../19-ruby-did-you-mean_1.6.3-2_all.deb ... Unpacking ruby-did-you-mean (1.6.3-2) ... Selecting previously unselected package ruby-minitest. Preparing to unpack .../20-ruby-minitest_5.25.4-2_all.deb ... Unpacking ruby-minitest (5.25.4-2) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../21-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-power-assert. Preparing to unpack .../22-ruby-power-assert_2.0.3-1_all.deb ... Unpacking ruby-power-assert (2.0.3-1) ... Selecting previously unselected package ruby-test-unit. Preparing to unpack .../23-ruby-test-unit_3.6.2-1_all.deb ... Unpacking ruby-test-unit (3.6.2-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../24-ruby-webrick_1.9.1-1_all.deb ... Unpacking ruby-webrick (1.9.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../25-ruby-xmlrpc_0.3.3-2_all.deb ... Unpacking ruby-xmlrpc (0.3.3-2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../26-libyaml-0-2_0.2.5-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2) ... Selecting previously unselected package libruby3.3:amd64. Preparing to unpack .../27-libruby3.3_3.3.7-1_amd64.deb ... Unpacking libruby3.3:amd64 (3.3.7-1) ... Selecting previously unselected package libruby:amd64. Preparing to unpack .../28-libruby_1%3a3.3+b1_amd64.deb ... Unpacking libruby:amd64 (1:3.3+b1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../29-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../30-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../31-ncbi-blast+_2.16.0+ds-6+b1_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-6+b1) ... Selecting previously unselected package ruby-bio. Preparing to unpack .../32-ruby-bio_2.0.5-1_all.deb ... Unpacking ruby-bio (2.0.5-1) ... Selecting previously unselected package ruby-facade. Preparing to unpack .../33-ruby-facade_1.2.1-1_all.deb ... Unpacking ruby-facade (1.2.1-1) ... Selecting previously unselected package ruby-pathname2. Preparing to unpack .../34-ruby-pathname2_1.8.2-2_all.deb ... Unpacking ruby-pathname2 (1.8.2-2) ... Selecting previously unselected package ruby-fixwhich. Preparing to unpack .../35-ruby-fixwhich_1.0.2-2_all.deb ... Unpacking ruby-fixwhich (1.0.2-2) ... Selecting previously unselected package ruby-threach. Preparing to unpack .../36-ruby-threach_0.2.0-2_all.deb ... Unpacking ruby-threach (0.2.0-2) ... Selecting previously unselected package ruby-trollop. Preparing to unpack .../37-ruby-trollop_2.0-2.1_all.deb ... Unpacking ruby-trollop (2.0-2.1) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../38-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (13.0.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-5) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up ruby-facade (1.2.1-1) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up ruby-power-assert (2.0.3-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libsqlite3-0:amd64 (3.46.1-2) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up ruby-minitest (5.25.4-2) ... Setting up ruby-test-unit (3.6.2-1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up ruby-webrick (1.9.1-1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up perl-modules-5.40 (5.40.1-2) ... Setting up ruby-pathname2 (1.8.2-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.2-3) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up ruby-bio (2.0.5-1) ... Setting up libperl5.40:amd64 (5.40.1-2) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up perl (5.40.1-2) ... Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... Setting up libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3.13 (3.13.2-2) ... Setting up python3 (3.13.2-2) ... Setting up rubygems-integration (1.19) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up libruby3.3:amd64 (3.3.7-1) ... Setting up ruby-rubygems (3.6.3-1) ... Setting up ruby3.3 (3.3.7-1) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-threach (0.2.0-2) ... Setting up rake (13.2.1-1) ... Setting up ruby-fixwhich (1.0.2-2) ... Setting up ruby-trollop (2.0-2.1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m12.6s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m12.6s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp2elwtn7e/./tmp/piuparts-depends-dummy.deb 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m12.6s DUMP: piuparts-depends-dummy install ok installed 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m12.6s DUMP: (Reading database ... 13193 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'clean'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'clean'] 0m12.7s DEBUG: Recording chroot state 0m13.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m13.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m14.0s ERROR: WARN: Broken symlinks: /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/js/jquery.js -> ../../../../../../../../share/javascript/jquery/jquery.min.js /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-RegularItalic.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-Italic.ttf /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-Regular.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-Regular.ttf /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-LightItalic.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-LightItalic.ttf /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-Light.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-Light.ttf /usr/share/man/man1/rdbg.1.gz -> rdbg3.3.1.gz 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy'] 0m14.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m14.4s DUMP: ruby-crb-blast: Installed: (none) Candidate: 0.6.9-5 Version table: 0.6.9-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', 'install', 'ruby-crb-blast=0.6.9-5'] 0m15.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: ruby-crb-blast 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 kB of archives. After this operation, 53.2 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 ruby-crb-blast all 0.6.9-5 [12.1 kB] Fetched 12.1 kB in 0s (69.1 kB/s) Selecting previously unselected package ruby-crb-blast. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13193 files and directories currently installed.) Preparing to unpack .../ruby-crb-blast_0.6.9-5_all.deb ... Unpacking ruby-crb-blast (0.6.9-5) ... Setting up ruby-crb-blast (0.6.9-5) ... 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', 'install', 'ruby-crb-blast=0.6.9-5'] 0m15.1s INFO: Running scripts post_install 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_install_exceptions'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_install_exceptions'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'systemd-tmpfiles', '--cat-config'] 0m15.1s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m15.1s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'systemd-tmpfiles', '--cat-config'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'remove', 'ruby-crb-blast'] 0m15.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libexpat1 libffi8 libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsqlite3-0 libuv1t64 libyaml-0-2 media-types ncbi-blast+ ncbi-data python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-bio ruby-did-you-mean ruby-facade ruby-fixwhich ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-rubygems ruby-test-unit ruby-threach ruby-trollop ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: ruby-crb-blast 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 53.2 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13206 files and directories currently installed.) Removing ruby-crb-blast (0.6.9-5) ... 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'remove', 'ruby-crb-blast'] 0m15.5s INFO: Reinstalling after remove 0m15.5s INFO: Running scripts pre_install 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy'] 0m15.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m15.6s DUMP: ruby-crb-blast: Installed: (none) Candidate: 0.6.9-5 Version table: 0.6.9-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', 'install', 'ruby-crb-blast=0.6.9-5'] 0m16.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: ruby-crb-blast 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/12.1 kB of archives. After this operation, 53.2 kB of additional disk space will be used. Selecting previously unselected package ruby-crb-blast. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13193 files and directories currently installed.) Preparing to unpack .../ruby-crb-blast_0.6.9-5_all.deb ... Unpacking ruby-crb-blast (0.6.9-5) ... Setting up ruby-crb-blast (0.6.9-5) ... 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', 'install', 'ruby-crb-blast=0.6.9-5'] 0m16.0s INFO: Running scripts post_install 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_install_exceptions'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_install_exceptions'] 0m16.0s INFO: Running scripts pre_install 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_database-server'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_database-server'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_exceptions'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_exceptions'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_extras'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_extras'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy'] 0m16.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m16.1s DUMP: ruby-crb-blast: Installed: 0.6.9-5 Candidate: 0.6.9-5 Version table: *** 0.6.9-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-cache', 'policy', 'ruby-crb-blast'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', 'install', '--reinstall', 'ruby-crb-blast=0.6.9-5'] 0m16.5s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/12.1 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13206 files and directories currently installed.) Preparing to unpack .../ruby-crb-blast_0.6.9-5_all.deb ... Unpacking ruby-crb-blast (0.6.9-5) over (0.6.9-5) ... Setting up ruby-crb-blast (0.6.9-5) ... 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', '-y', 'install', '--reinstall', 'ruby-crb-blast=0.6.9-5'] 0m16.5s INFO: Running scripts post_install 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_install_exceptions'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_install_exceptions'] 0m16.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m17.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m17.6s ERROR: WARN: Broken symlinks: /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/js/jquery.js -> ../../../../../../../../share/javascript/jquery/jquery.min.js (libruby3.3:amd64) /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-RegularItalic.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-Italic.ttf (libruby3.3:amd64) /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-Regular.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-Regular.ttf (libruby3.3:amd64) /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-LightItalic.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-LightItalic.ttf (libruby3.3:amd64) /usr/lib/ruby/3.3.0/rdoc/generator/template/darkfish/fonts/Lato-Light.ttf -> ../../../../../../../../share/fonts/truetype/lato/Lato-Light.ttf (libruby3.3:amd64) /usr/share/man/man1/rdbg.1.gz -> rdbg3.3.1.gz (ruby) 0m18.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', '-ac', '--ignore-obsolete'] 0m18.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', '-ac', '--ignore-obsolete'] 0m18.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.9s DUMP: 0.15.6 0m18.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.9s INFO: Running adequate version 0.15.6 now. 0m18.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'ruby-crb-blast'] 0m18.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'ruby-crb-blast'] 0m18.9s INFO: Running scripts pre_remove 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_exceptions'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_exceptions'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.5s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed ca-certificates ca-certificates 20241223 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libexpat1:amd64 libexpat1 2.7.0-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.2-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.2-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.2-3 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-2 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed libruby:amd64 libruby 1:3.3+b1 install ok installed libruby3.3:amd64 libruby3.3 3.3.7-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libuv1t64:amd64 libuv1t64 1.50.0-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.40.4-5 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-6+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.4.1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl perl 5.40.1-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed python3 python3 3.13.2-2 install ok installed python3-minimal python3-minimal 3.13.2-2 install ok installed python3.13 python3.13 3.13.2-2 install ok installed python3.13-minimal python3.13-minimal 3.13.2-2 install ok installed rake rake 13.2.1-1 install ok installed readline-common readline-common 8.2-6 install ok installed ruby ruby 1:3.3+b1 install ok installed ruby-bio ruby-bio 2.0.5-1 install ok installed ruby-crb-blast ruby-crb-blast 0.6.9-5 install ok installed ruby-did-you-mean ruby-did-you-mean 1.6.3-2 install ok installed ruby-facade ruby-facade 1.2.1-1 install ok installed ruby-fixwhich ruby-fixwhich 1.0.2-2 install ok installed ruby-minitest ruby-minitest 5.25.4-2 install ok installed ruby-net-telnet ruby-net-telnet 0.2.0-1 install ok installed ruby-pathname2 ruby-pathname2 1.8.2-2 install ok installed ruby-power-assert ruby-power-assert 2.0.3-1 install ok installed ruby-rubygems ruby-rubygems 3.6.3-1 install ok installed ruby-test-unit ruby-test-unit 3.6.2-1 install ok installed ruby-threach ruby-threach 0.2.0-2 install ok installed ruby-trollop ruby-trollop 2.0-2.1 install ok installed ruby-webrick ruby-webrick 1.9.1-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.3-2 install ok installed ruby3.3 ruby3.3 3.3.7-1 install ok installed rubygems-integration rubygems-integration 1.19 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'ruby-crb-blast'] 0m20.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libruby libruby3.3 libsqlite3-0 libuv1t64 libyaml-0-2 media-types ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal rake readline-common ruby ruby-bio ruby-crb-blast ruby-did-you-mean ruby-facade ruby-fixwhich ruby-minitest ruby-net-telnet ruby-pathname2 ruby-power-assert ruby-rubygems ruby-test-unit ruby-threach ruby-trollop ruby-webrick ruby-xmlrpc ruby3.3 rubygems-integration 0 upgraded, 0 newly installed, 52 to remove and 0 not upgraded. After this operation, 214 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13206 files and directories currently installed.) Removing ruby-crb-blast (0.6.9-5) ... Removing ruby-trollop (2.0-2.1) ... Removing ruby-threach (0.2.0-2) ... Removing ncbi-blast+ (2.16.0+ds-6+b1) ... Removing python3 (3.13.2-2) ... Removing python3-minimal (3.13.2-2) ... Removing python3.13 (3.13.2-2) ... Removing python3.13-minimal (3.13.2-2) ... Removing libexpat1:amd64 (2.7.0-1) ... Removing libpython3-stdlib:amd64 (3.13.2-2) ... Removing libpython3.13-stdlib:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing perl (5.40.1-2) ... Removing libperl5.40:amd64 (5.40.1-2) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing liblmdb0:amd64 (0.9.31-1+b2) ... Removing libmbedtls21:amd64 (3.6.2-3) ... Removing libmbedx509-7:amd64 (3.6.2-3) ... Removing libmbedcrypto16:amd64 (3.6.2-3) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libpython3.13-minimal:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-2) ... Removing libuv1t64:amd64 (1.50.0-2) ... Removing media-types (13.0.0) ... Removing ncbi-data (6.1.20170106+dfsg2-5) ... Removing netbase (6.5) ... Removing perl-modules-5.40 (5.40.1-2) ... Removing readline-common (8.2-6) ... Removing ruby-bio (2.0.5-1) ... Removing ruby-fixwhich (1.0.2-2) ... Removing ruby-pathname2 (1.8.2-2) ... Removing ruby-facade (1.2.1-1) ... Removing rake (13.2.1-1) ... Removing ruby (1:3.3+b1) ... Removing ruby-rubygems (3.6.3-1) ... Removing libruby:amd64 (1:3.3+b1) ... Removing ruby3.3 (3.3.7-1) ... Removing libruby3.3:amd64 (3.3.7-1) ... Removing rubygems-integration (1.19) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libffi8:amd64 (3.4.7-1) ... Removing libyaml-0-2:amd64 (0.2.5-2) ... Removing openssl (3.4.1-1) ... Removing ruby-did-you-mean (1.6.3-2) ... Removing ruby-minitest (5.25.4-2) ... Removing ruby-net-telnet (0.2.0-1) ... Removing ruby-test-unit (3.6.2-1) ... Removing ruby-power-assert (2.0.3-1) ... Removing ruby-xmlrpc (0.3.3-2) ... Removing ruby-webrick (1.9.1-1) ... Processing triggers for libc-bin (2.41-6) ... 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration', 'ruby-crb-blast'] 0m20.3s INFO: Running scripts post_remove 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_remove_cleanup'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_remove_cleanup'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_remove_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_remove_exceptions'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', 'ca-certificates', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration'] 0m20.4s DUMP: (Reading database ... 5471 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.2-2) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove libruby which isn't installed dpkg: warning: ignoring request to remove libruby3.3 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libuv1t64 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (13.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-5) ... Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.4.1-1) ... Purging configuration files for perl (5.40.1-2) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed Purging configuration files for python3 (3.13.2-2) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.2-2) ... dpkg: warning: ignoring request to remove rake which isn't installed Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-bio which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-facade which isn't installed dpkg: warning: ignoring request to remove ruby-fixwhich which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-pathname2 which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-threach which isn't installed dpkg: warning: ignoring request to remove ruby-trollop which isn't installed dpkg: warning: ignoring request to remove ruby-webrick which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby3.3 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', 'ca-certificates', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libruby:amd64', 'libruby3.3:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'rake', 'readline-common', 'ruby', 'ruby-bio', 'ruby-did-you-mean', 'ruby-facade', 'ruby-fixwhich', 'ruby-minitest', 'ruby-net-telnet', 'ruby-pathname2', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-threach', 'ruby-trollop', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.3', 'rubygems-integration'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', 'ruby-crb-blast'] 0m20.4s DUMP: dpkg: warning: ignoring request to remove ruby-crb-blast which isn't installed 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', 'ruby-crb-blast'] 0m20.4s INFO: Running scripts post_purge 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_purge_exceptions'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_purge_exceptions'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_purge_manual_cleanup'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_purge_manual_cleanup'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', '--pending'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--purge', '--pending'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--remove', '--pending'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg', '--remove', '--pending'] 0m20.4s INFO: Running scripts post_test 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_test_exceptions'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'tmp/scripts/post_test_exceptions'] 0m20.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m20.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m20.9s DEBUG: No broken symlinks as far as we can find. 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-divert', '--list'] 0m20.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'dpkg-divert', '--list'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'clean'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e', 'apt-get', 'clean'] 0m20.9s DEBUG: Recording chroot state 0m21.6s INFO: PASS: Installation and purging test. 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/shm'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/shm'] 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/console'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/console'] 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/ptmx'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/ptmx'] 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/pts'] 0m21.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/dev/pts'] 0m21.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/proc'] 0m21.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e/proc'] 0m21.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m21.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2elwtn7e'] 0m21.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2elwtn7e 0m21.9s INFO: PASS: All tests. 0m21.9s INFO: piuparts run ends. ret=0 End: 2025-03-17 14:00:43 GMT