Start: 2026-08-07 06:08:35 GMT Package: seer Source: seer (1.1.4-9) Version: 1.1.4-9+b1 Installed-Size: 5090 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libarmadillo15 (>= 1:15.2.1+dfsg), libblas3 | libblas.so.3, libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+git20171107.9a20658), libhdf5-320 (>= 2.1.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), libtext-csv-perl Suggests: fsm-lite Description: genomic sequence element (kmer) enrichment analysis Homepage: https://github.com/johnlees/seer Description-md5: 979255ced90d884824e6cb3db05419ed Section: science Priority: optional Filename: pool/main/s/seer/seer_1.1.4-9+b1_amd64.deb Size: 1239360 MD5sum: 5df8e602911736e190f73b22902ddf7e SHA256: 36621eee5b94fa770695571641b1fd1a7e71991a6bf087e8ad9571d8d9090ae0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt seer=1.1.4-9+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt seer=1.1.4-9+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-52-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.180-1 (2026-08-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpz0x_06du 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpz0x_06du 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpz0x_06du/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpz0x_06du/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'update'] 0m3.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.7 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7704 kB] Fetched 18.6 MB in 2s (8844 kB/s) Reading package lists... 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'update'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: e9ffaf8f3d4f71e750107d488722e828 - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_fake-essential'] 0m6.8s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... init-system-helpers is already the newest version (1.69). Solving dependencies... The following additional packages will be installed: libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-1 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1879 kB of archives. After this operation, 5273 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.6-3 [69.4 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.6-3 [983 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.26 [599 kB] Preconfiguring packages ... Fetched 1879 kB in 0s (31.3 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../1-libproc2-1_2%3a4.0.6-3_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.6-3) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.6-3_amd64.deb ... Unpacking procps (2:4.0.6-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.26_all.deb ... Unpacking dbconfig-common (2.0.26) ... Setting up libtext-charwidth-perl:amd64 (0.04-12+b1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libproc2-1:amd64 (2:4.0.6-3) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up sensible-utils (0.0.26) ... Setting up procps (2:4.0.6-3) ... Setting up ucf (3.0056) ... Setting up dbconfig-common (2.0.26) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.42-17) ... 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_fake-essential'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_forbid_home'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_minimize'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_setup_zz_backports'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'clean'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'clean'] 0m6.8s DEBUG: Recording chroot state 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.1.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-17 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-17 install ok installed libc6:amd64 libc6 2.42-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.1.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.6-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.1.0-3 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.2-3 install ok installed procps procps 2:4.0.6-3 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.2-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-divert', '--list'] 0m7.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-divert', '--list'] 0m7.3s INFO: Running scripts is_testable 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s INFO: apt-cache does not know about any of the requested packages 0m7.3s INFO: Running scripts pre_test 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_test_root_password'] 0m7.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_test_root_password'] 0m7.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m7.9s DEBUG: No broken symlinks as far as we can find. 0m7.9s INFO: Running scripts pre_install 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'show', '--no-all-versions', 'seer=1.1.4-9+b1'] 0m9.1s DUMP: Package: seer Source: seer (1.1.4-9) Version: 1.1.4-9+b1 Installed-Size: 5090 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libarmadillo15 (>= 1:15.2.1+dfsg), libblas3 | libblas.so.3, libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+git20171107.9a20658), libhdf5-320 (>= 2.1.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), libtext-csv-perl Suggests: fsm-lite Description-en: genomic sequence element (kmer) enrichment analysis Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics. Description-md5: 979255ced90d884824e6cb3db05419ed Homepage: https://github.com/johnlees/seer Section: science Priority: optional Filename: pool/main/s/seer/seer_1.1.4-9+b1_amd64.deb Size: 1239360 MD5sum: 5df8e602911736e190f73b22902ddf7e SHA256: 36621eee5b94fa770695571641b1fd1a7e71991a6bf087e8ad9571d8d9090ae0 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'show', '--no-all-versions', 'seer=1.1.4-9+b1'] 0m9.1s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libarmadillo15 (>= 1:15.2.1+dfsg), libblas3 | libblas.so.3, libboost-program-options1.90.0 (>= 1.90.0), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+git20171107.9a20658), libhdf5-320 (>= 2.1.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), libtext-csv-perl Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m9.1s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpbbfofwqo/piuparts-depends-dummy'] 0m9.1s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpbbfofwqo/piuparts-depends-dummy.deb'. 0m9.1s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpbbfofwqo/piuparts-depends-dummy'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.1s DUMP: 3.3.2 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.1s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpbbfofwqo/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpz0x_06du/tmp 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m11.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: libarmadillo15 libarpack2t64 libblas3 libboost-program-options1.90.0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgzstream0 libhdf5-320 liblapack3 libperl5.42 libsuperlu7 libsz2 libtext-csv-perl perl perl-modules-5.42 Suggested packages: gdbm-l10n perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: libtext-csv-xs-perl netbase The following NEW packages will be installed: libarmadillo15 libarpack2t64 libblas3 libboost-program-options1.90.0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgzstream0 libhdf5-320 liblapack3 libperl5.42 libsuperlu7 libsz2 libtext-csv-perl perl perl-modules-5.42 piuparts-depends-dummy 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 14.5 MB/14.5 MB of archives. After this operation, 73.3 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [782 B] Get:2 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.2-3 [3210 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.2-3 [4245 kB] Get:6 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.2-3 [265 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.1.0-3 [878 kB] Get:9 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libarpack2t64 amd64 3.9.1-6+b2 [105 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsuperlu7 amd64 7.0.1+dfsg1-2+b2 [174 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [106 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.90.0 amd64 1.90.0-6 [339 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgzstream0 amd64 1.5+git20171107.9a20658-3+b2 [7336 B] Get:15 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libhdf5-320 amd64 2.1.0+repack-1 [2168 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libtext-csv-perl all 2.06-1 [116 kB] Fetched 14.5 MB in 0s (97.2 MB/s) Selecting previously unselected package perl-modules-5.42. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5517 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.42_5.42.2-3_all.deb ... Unpacking perl-modules-5.42 (5.42.2-3) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../01-libgdbm6t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.26-1+b2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../02-libgdbm-compat4t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.26-1+b2) ... Selecting previously unselected package libperl5.42:amd64. Preparing to unpack .../03-libperl5.42_5.42.2-3_amd64.deb ... Unpacking libperl5.42:amd64 (5.42.2-3) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.42.2-3_amd64.deb ... Unpacking perl (5.42.2-3) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../05-libblas3_3.12.1-8_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../06-libgfortran5_16.1.0-3_amd64.deb ... Unpacking libgfortran5:amd64 (16.1.0-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../07-liblapack3_3.12.1-8_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-8) ... Selecting previously unselected package libarpack2t64:amd64. Preparing to unpack .../08-libarpack2t64_3.9.1-6+b2_amd64.deb ... Unpacking libarpack2t64:amd64 (3.9.1-6+b2) ... Selecting previously unselected package libsuperlu7:amd64. Preparing to unpack .../09-libsuperlu7_7.0.1+dfsg1-2+b2_amd64.deb ... Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2+b2) ... Selecting previously unselected package libarmadillo15. Preparing to unpack .../10-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... Selecting previously unselected package libboost-program-options1.90.0:amd64. Preparing to unpack .../11-libboost-program-options1.90.0_1.90.0-6_amd64.deb ... Unpacking libboost-program-options1.90.0:amd64 (1.90.0-6) ... Selecting previously unselected package libgzstream0:amd64. Preparing to unpack .../12-libgzstream0_1.5+git20171107.9a20658-3+b2_amd64.deb ... Unpacking libgzstream0:amd64 (1.5+git20171107.9a20658-3+b2) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../13-libsz2_1.1.7-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.7-1) ... Selecting previously unselected package libhdf5-320:amd64. Preparing to unpack .../14-libhdf5-320_2.1.0+repack-1_amd64.deb ... Unpacking libhdf5-320:amd64 (2.1.0+repack-1) ... Selecting previously unselected package libtext-csv-perl. Preparing to unpack .../15-libtext-csv-perl_2.06-1_all.deb ... Unpacking libtext-csv-perl (2.06-1) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../16-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libboost-program-options1.90.0:amd64 (1.90.0-6) ... Setting up libgfortran5:amd64 (16.1.0-3) ... Setting up libgzstream0:amd64 (1.5+git20171107.9a20658-3+b2) ... Setting up perl-modules-5.42 (5.42.2-3) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libarpack2t64:amd64 (3.9.1-6+b2) ... Setting up libperl5.42:amd64 (5.42.2-3) ... Setting up libsuperlu7:amd64 (7.0.1+dfsg1-2+b2) ... Setting up perl (5.42.2-3) ... Setting up libhdf5-320:amd64 (2.1.0+repack-1) ... Setting up libarmadillo15 (1:15.2.1+dfsg-2) ... Setting up libtext-csv-perl (2.06-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.42-17) ... 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m11.2s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m11.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpz0x_06du/./tmp/piuparts-depends-dummy.deb 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m11.2s DUMP: piuparts-depends-dummy install ok installed 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m11.3s DUMP: (Reading database ... 7824 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'clean'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'clean'] 0m11.3s DEBUG: Recording chroot state 0m11.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m12.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m12.5s DEBUG: No broken symlinks as far as we can find. 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy'] 0m13.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy', 'seer'] 0m13.4s DUMP: seer: Installed: (none) Candidate: 1.1.4-9+b1 Version table: 1.1.4-9+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy', 'seer'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', 'install', 'seer=1.1.4-9+b1'] 0m14.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: fsm-lite The following NEW packages will be installed: seer 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1239 kB of archives. After this operation, 5212 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 seer amd64 1.1.4-9+b1 [1239 kB] Fetched 1239 kB in 0s (26.1 MB/s) Selecting previously unselected package seer. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7824 files and directories currently installed.) Preparing to unpack .../seer_1.1.4-9+b1_amd64.deb ... Unpacking seer (1.1.4-9+b1) ... Setting up seer (1.1.4-9+b1) ... 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', 'install', 'seer=1.1.4-9+b1'] 0m14.6s INFO: Running scripts post_install 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_install_exceptions'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_install_exceptions'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'systemd-tmpfiles', '--cat-config'] 0m14.6s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m14.6s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'systemd-tmpfiles', '--cat-config'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'remove', 'seer'] 0m15.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: libarmadillo15 libarpack2t64 libblas3 libboost-program-options1.90.0 libgfortran5 libgzstream0 libhdf5-320 liblapack3 libsuperlu7 libsz2 libtext-csv-perl Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: seer 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 5212 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7888 files and directories currently installed.) Removing seer (1.1.4-9+b1) ... 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'remove', 'seer'] 0m15.7s INFO: Reinstalling after remove 0m15.7s INFO: Running scripts pre_install 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_database-server'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_database-server'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_exceptions'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_exceptions'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_extras'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_extras'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy'] 0m15.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy', 'seer'] 0m15.8s DUMP: seer: Installed: (none) Candidate: 1.1.4-9+b1 Version table: 1.1.4-9+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy', 'seer'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', 'install', 'seer=1.1.4-9+b1'] 0m17.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Suggested packages: fsm-lite The following NEW packages will be installed: seer 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1239 kB of archives. After this operation, 5212 kB of additional disk space will be used. Selecting previously unselected package seer. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7824 files and directories currently installed.) Preparing to unpack .../seer_1.1.4-9+b1_amd64.deb ... Unpacking seer (1.1.4-9+b1) ... Setting up seer (1.1.4-9+b1) ... 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', 'install', 'seer=1.1.4-9+b1'] 0m17.1s INFO: Running scripts post_install 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_install_exceptions'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_install_exceptions'] 0m17.1s INFO: Running scripts pre_install 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_database-server'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_database-server'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_exceptions'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_exceptions'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_extras'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_extras'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy'] 0m17.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy', 'seer'] 0m17.2s DUMP: seer: Installed: 1.1.4-9+b1 Candidate: 1.1.4-9+b1 Version table: *** 1.1.4-9+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-cache', 'policy', 'seer'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', 'install', '--reinstall', 'seer=1.1.4-9+b1'] 0m18.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/1239 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7888 files and directories currently installed.) Preparing to unpack .../seer_1.1.4-9+b1_amd64.deb ... Unpacking seer (1.1.4-9+b1) over (1.1.4-9+b1) ... Setting up seer (1.1.4-9+b1) ... 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', '-y', 'install', '--reinstall', 'seer=1.1.4-9+b1'] 0m18.4s INFO: Running scripts post_install 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_install_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_install_exceptions'] 0m18.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m19.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m19.8s DEBUG: No broken symlinks as far as we can find. 0m20.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', '-ac', '--ignore-obsolete'] 0m21.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', '-ac', '--ignore-obsolete'] 0m21.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m21.5s DUMP: 0.15.9~deb12u1 0m21.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m21.5s INFO: Running adequate version 0.15.9~deb12u1 now. 0m21.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'seer'] 0m21.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'seer'] 0m21.6s INFO: Running scripts pre_remove 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_exceptions'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_exceptions'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m22.3s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.26 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.1.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libarmadillo15 libarmadillo15 1:15.2.1+dfsg-2 install ok installed libarpack2t64:amd64 libarpack2t64 3.9.1-6+b2 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libboost-program-options1.90.0:amd64 libboost-program-options1.90.0 1.90.0-6 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-17 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-17 install ok installed libc6:amd64 libc6 2.42-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.1.0-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.1.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgzstream0:amd64 libgzstream0 1.5+git20171107.9a20658-3+b2 install ok installed libhdf5-320:amd64 libhdf5-320 2.1.0+repack-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libperl5.42:amd64 libperl5.42 5.42.2-3 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.6-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.1.0-3 install ok installed libsuperlu7:amd64 libsuperlu7 7.0.1+dfsg1-2+b2 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-csv-perl libtext-csv-perl 2.06-1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl perl 5.42.2-3 install ok installed perl-base perl-base 5.42.2-3 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.2-3 install ok installed procps procps 2:4.0.6-3 install ok installed sed sed 4.9-3 install ok installed seer seer 1.1.4-9+b1 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed util-linux util-linux 2.42.2-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'remove', '--allow-remove-essential', 'libarmadillo15', 'libarpack2t64:amd64', 'libblas3:amd64', 'libboost-program-options1.90.0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgzstream0:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'libperl5.42:amd64', 'libsuperlu7:amd64', 'libsz2:amd64', 'libtext-csv-perl', 'perl', 'perl-modules-5.42', 'seer'] 0m23.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: libarmadillo15 libarpack2t64 libblas3 libboost-program-options1.90.0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgzstream0 libhdf5-320 liblapack3 libperl5.42 libsuperlu7 libsz2 libtext-csv-perl perl perl-modules-5.42 seer 0 upgraded, 0 newly installed, 17 to remove and 0 not upgraded. After this operation, 78.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7888 files and directories currently installed.) Removing seer (1.1.4-9+b1) ... Removing libarmadillo15 (1:15.2.1+dfsg-2) ... Removing libarpack2t64:amd64 (3.9.1-6+b2) ... Removing libsuperlu7:amd64 (7.0.1+dfsg1-2+b2) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libboost-program-options1.90.0:amd64 (1.90.0-6) ... Removing libtext-csv-perl (2.06-1) ... Removing perl (5.42.2-3) ... Removing libperl5.42:amd64 (5.42.2-3) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgfortran5:amd64 (16.1.0-3) ... Removing libgzstream0:amd64 (1.5+git20171107.9a20658-3+b2) ... Removing libhdf5-320:amd64 (2.1.0+repack-1) ... Removing libsz2:amd64 (1.1.7-1) ... Removing perl-modules-5.42 (5.42.2-3) ... Processing triggers for libc-bin (2.42-17) ... 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'remove', '--allow-remove-essential', 'libarmadillo15', 'libarpack2t64:amd64', 'libblas3:amd64', 'libboost-program-options1.90.0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgzstream0:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'libperl5.42:amd64', 'libsuperlu7:amd64', 'libsz2:amd64', 'libtext-csv-perl', 'perl', 'perl-modules-5.42', 'seer'] 0m23.4s INFO: Running scripts post_remove 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_remove_cleanup'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_remove_cleanup'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_remove_exceptions'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_remove_exceptions'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', 'libarmadillo15', 'libarpack2t64:amd64', 'libblas3:amd64', 'libboost-program-options1.90.0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgzstream0:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'libperl5.42:amd64', 'libsuperlu7:amd64', 'libsz2:amd64', 'libtext-csv-perl', 'perl', 'perl-modules-5.42'] 0m23.4s DUMP: dpkg: warning: ignoring request to remove libarmadillo15 which is not installed dpkg: warning: ignoring request to remove libarpack2t64 which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libboost-program-options1.90.0 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgzstream0 which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libsuperlu7 which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libtext-csv-perl which is not installed (Reading database ... 5520 files and directories currently installed.) Purging configuration files for perl (5.42.2-3) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', 'libarmadillo15', 'libarpack2t64:amd64', 'libblas3:amd64', 'libboost-program-options1.90.0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgzstream0:amd64', 'libhdf5-320:amd64', 'liblapack3:amd64', 'libperl5.42:amd64', 'libsuperlu7:amd64', 'libsz2:amd64', 'libtext-csv-perl', 'perl', 'perl-modules-5.42'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', 'seer'] 0m23.5s DUMP: dpkg: warning: ignoring request to remove seer which is not installed 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', 'seer'] 0m23.5s INFO: Running scripts post_purge 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_purge_exceptions'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_purge_exceptions'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_purge_manual_cleanup'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_purge_manual_cleanup'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', '--pending'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--purge', '--pending'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--remove', '--pending'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg', '--remove', '--pending'] 0m23.5s INFO: Running scripts post_test 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_test_exceptions'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'tmp/scripts/post_test_exceptions'] 0m23.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m23.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m24.1s DEBUG: No broken symlinks as far as we can find. 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-divert', '--list'] 0m24.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'dpkg-divert', '--list'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'clean'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpz0x_06du', 'apt-get', 'clean'] 0m24.2s DEBUG: Recording chroot state 0m25.2s INFO: PASS: Installation and purging test. 0m25.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/shm'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/shm'] 0m25.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/console'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/console'] 0m25.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/ptmx'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/ptmx'] 0m25.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/pts'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/dev/pts'] 0m25.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/proc'] 0m25.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpz0x_06du/proc'] 0m25.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m25.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpz0x_06du'] 0m25.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpz0x_06du 0m25.6s INFO: PASS: All tests. 0m25.6s INFO: piuparts run ends. ret=0 End: 2026-08-07 06:09:01 GMT