Start: 2024-02-18 16:09:35 GMT Package: seqan-needle Version: 1.0.2+ds-2 Installed-Size: 1128 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Description: pre-filter for the counting of very large collections of nucleotide sequences Homepage: https://github.com/seqan/needle Description-md5: 2cad19d928273c533843b7a22b5cef0c Section: science Priority: optional Filename: pool/main/s/seqan-needle/seqan-needle_1.0.2+ds-2_amd64.deb Size: 352828 MD5sum: 8ae75a9f340ee7137351e275d4e9a73f SHA256: 359bfbb62215deb092b248268e1cf27db4255ad296f2c339d6297ee85e4ff435 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt seqan-needle=1.0.2+ds-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt seqan-needle=1.0.2+ds-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpikc8ykyg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpikc8ykyg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpikc8ykyg/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpikc8ykyg/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'update'] 0m4.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9739 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7145 kB] Fetched 17.1 MB in 3s (5258 kB/s) Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: 20add4282f35ab9ddad487bf40747678 - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_dummy_users'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_fake-essential'] 0m9.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... init-system-helpers is already the newest version (1.66). The following additional packages will be installed: sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks The following NEW packages will be installed: dbconfig-common sensible-utils ucf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 670 kB of archives. After this operation, 1826 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 670 kB in 0s (9390 kB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5223 files and directories currently installed.) Preparing to unpack .../sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package ucf. Preparing to unpack .../ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up sensible-utils (0.0.22) ... Setting up ucf (3.0043+nmu1) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_fake-essential'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_forbid_home'] 0m9.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_forbid_home'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_minimize'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_setup_zz_backports'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'clean'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'clean'] 0m9.2s DEBUG: Recording chroot state 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.7s DUMP: install ok installed apt apt 2.7.11 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.11 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-divert', '--list'] 0m9.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-divert', '--list'] 0m9.7s INFO: Running scripts is_testable 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/is_testable_uninstallable'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/is_testable_uninstallable'] 0m9.7s INFO: apt-cache does not know about any of the requested packages 0m9.7s INFO: Running scripts pre_test 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_test_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_test_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_test_root_password'] 0m9.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_test_root_password'] 0m9.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m10.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m10.5s DEBUG: No broken symlinks as far as we can find. 0m10.5s INFO: Running scripts pre_install 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_database-server'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_database-server'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_exceptions'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_extras'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_extras'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'show', '--no-all-versions', 'seqan-needle=1.0.2+ds-2'] 0m11.8s DUMP: Package: seqan-needle Version: 1.0.2+ds-2 Installed-Size: 1128 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Description-en: pre-filter for the counting of very large collections of nucleotide sequences Needle is a tool for semi-quantitative analysis of very large collections of nucleotide sequences. . Needle stores its data in multiple interleaved Bloom filter, a fast and space efficient probabilistic data structure and uses a windowing scheme (also called minimisers) to reduce the amount of data to store. How many interleaved Bloom filter are used is defined by the user. Each interleaved Bloom filter has a so called expression threshold and stores minimisers with an occurrence greater than or equal to its own expression threshold and smaller than the next biggest expression threshold (if there is no bigger expression threshold, all greater than or equal to the threshold are stored). These expression thresholds are then used during the query (called estimate) to approximate the expression values of given transcripts. Description-md5: 2cad19d928273c533843b7a22b5cef0c Homepage: https://github.com/seqan/needle Section: science Priority: optional Filename: pool/main/s/seqan-needle/seqan-needle_1.0.2+ds-2_amd64.deb Size: 352828 MD5sum: 8ae75a9f340ee7137351e275d4e9a73f SHA256: 359bfbb62215deb092b248268e1cf27db4255ad296f2c339d6297ee85e4ff435 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'show', '--no-all-versions', 'seqan-needle=1.0.2+ds-2'] 0m11.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m11.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp6whaxmm0/piuparts-depends-dummy'] 0m11.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp6whaxmm0/piuparts-depends-dummy.deb'. 0m11.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp6whaxmm0/piuparts-depends-dummy'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.9s DUMP: 2.7.11 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m11.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp6whaxmm0/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpikc8ykyg/tmp 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m13.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libgomp1 The following NEW packages will be installed: libgomp1 piuparts-depends-dummy 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB/137 kB of archives. After this operation, 369 kB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [694 B] Get:2 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (2103 kB/s) Selecting previously unselected package libgomp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5573 files and directories currently installed.) Preparing to unpack .../libgomp1_14-20240201-3_amd64.deb ... Unpacking libgomp1:amd64 (14-20240201-3) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../tmp/piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up libgomp1:amd64 (14-20240201-3) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.37-15) ... 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m13.0s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m13.0s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpikc8ykyg/./tmp/piuparts-depends-dummy.deb 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m13.0s DUMP: piuparts-depends-dummy install ok installed 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m13.0s DUMP: (Reading database ... 5576 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'clean'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'clean'] 0m13.0s DEBUG: Recording chroot state 0m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m13.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m14.1s DEBUG: No broken symlinks as far as we can find. 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy'] 0m15.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy', 'seqan-needle'] 0m15.3s DUMP: seqan-needle: Installed: (none) Candidate: 1.0.2+ds-2 Version table: 1.0.2+ds-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy', 'seqan-needle'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', 'install', 'seqan-needle=1.0.2+ds-2'] 0m17.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: seqan-needle 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 353 kB of archives. After this operation, 1155 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 seqan-needle amd64 1.0.2+ds-2 [353 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 353 kB in 1s (663 kB/s) Selecting previously unselected package seqan-needle. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5576 files and directories currently installed.) Preparing to unpack .../seqan-needle_1.0.2+ds-2_amd64.deb ... Unpacking seqan-needle (1.0.2+ds-2) ... Setting up seqan-needle (1.0.2+ds-2) ... 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', 'install', 'seqan-needle=1.0.2+ds-2'] 0m17.1s INFO: Running scripts post_install 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_install_exceptions'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_install_exceptions'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'remove', 'seqan-needle'] 0m18.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgomp1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: seqan-needle 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 1155 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5590 files and directories currently installed.) Removing seqan-needle (1.0.2+ds-2) ... 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'remove', 'seqan-needle'] 0m18.3s INFO: Reinstalling after remove 0m18.3s INFO: Running scripts pre_install 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_database-server'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_exceptions'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_extras'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy'] 0m18.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy', 'seqan-needle'] 0m18.5s DUMP: seqan-needle: Installed: (none) Candidate: 1.0.2+ds-2 Version table: 1.0.2+ds-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy', 'seqan-needle'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', 'install', 'seqan-needle=1.0.2+ds-2'] 0m19.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: seqan-needle debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/353 kB of archives. After this operation, 1155 kB of additional disk space will be used. Selecting previously unselected package seqan-needle. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5576 files and directories currently installed.) Preparing to unpack .../seqan-needle_1.0.2+ds-2_amd64.deb ... Unpacking seqan-needle (1.0.2+ds-2) ... Setting up seqan-needle (1.0.2+ds-2) ... 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', 'install', 'seqan-needle=1.0.2+ds-2'] 0m19.8s INFO: Running scripts post_install 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_install_exceptions'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_install_exceptions'] 0m19.8s INFO: Running scripts pre_install 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_database-server'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_database-server'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_exceptions'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_exceptions'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_extras'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_extras'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy'] 0m19.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy', 'seqan-needle'] 0m20.0s DUMP: seqan-needle: Installed: 1.0.2+ds-2 Candidate: 1.0.2+ds-2 Version table: *** 1.0.2+ds-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-cache', 'policy', 'seqan-needle'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', 'install', '--reinstall', 'seqan-needle=1.0.2+ds-2'] 0m21.3s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/353 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5590 files and directories currently installed.) Preparing to unpack .../seqan-needle_1.0.2+ds-2_amd64.deb ... Unpacking seqan-needle (1.0.2+ds-2) over (1.0.2+ds-2) ... Setting up seqan-needle (1.0.2+ds-2) ... 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', '-y', 'install', '--reinstall', 'seqan-needle=1.0.2+ds-2'] 0m21.3s INFO: Running scripts post_install 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_install_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_install_exceptions'] 0m21.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m21.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m22.1s DEBUG: No broken symlinks as far as we can find. 0m22.1s INFO: /bin converted to /usr/bin by /usr merge 0m22.1s INFO: /lib converted to /usr/lib by /usr merge 0m22.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m22.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m22.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m22.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m22.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m22.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m22.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m22.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m22.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m22.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m22.1s INFO: /sbin converted to /usr/sbin by /usr merge 0m22.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', '-ac', '--ignore-obsolete'] 0m23.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', '-ac', '--ignore-obsolete'] 0m23.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.2s DUMP: 0.15.6 0m23.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.2s INFO: Running adequate version 0.15.6 now. 0m23.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'seqan-needle'] 0m23.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'seqan-needle'] 0m23.3s INFO: Running scripts pre_remove 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_exceptions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.3s DUMP: install ok installed apt apt 2.7.11 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.11 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed seqan-needle seqan-needle 1.0.2+ds-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'remove', 'libgomp1:amd64', 'seqan-needle'] 0m25.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libgomp1 seqan-needle 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 1524 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5590 files and directories currently installed.) Removing seqan-needle (1.0.2+ds-2) ... Removing libgomp1:amd64 (14-20240201-3) ... Processing triggers for libc-bin (2.37-15) ... 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'remove', 'libgomp1:amd64', 'seqan-needle'] 0m25.4s INFO: Running scripts post_remove 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_remove_cleanup'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_remove_cleanup'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_remove_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_remove_exceptions'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', 'libgomp1:amd64'] 0m25.4s DUMP: dpkg: warning: ignoring request to remove libgomp1 which isn't installed 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', 'libgomp1:amd64'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', 'seqan-needle'] 0m25.4s DUMP: dpkg: warning: ignoring request to remove seqan-needle which isn't installed 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', 'seqan-needle'] 0m25.4s INFO: Running scripts post_purge 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_purge_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_purge_exceptions'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_purge_manual_cleanup'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_purge_manual_cleanup'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', '--pending'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--purge', '--pending'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--remove', '--pending'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg', '--remove', '--pending'] 0m25.4s INFO: Running scripts post_test 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_test_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'tmp/scripts/post_test_exceptions'] 0m25.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m25.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m26.1s DEBUG: No broken symlinks as far as we can find. 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-divert', '--list'] 0m26.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'dpkg-divert', '--list'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'clean'] 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg', 'apt-get', 'clean'] 0m26.2s DEBUG: Recording chroot state 0m26.8s INFO: PASS: Installation and purging test. 0m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/shm'] 0m27.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/shm'] 0m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/console'] 0m27.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/console'] 0m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/ptmx'] 0m27.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/ptmx'] 0m27.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/pts'] 0m27.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/dev/pts'] 0m27.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/proc'] 0m27.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg/proc'] 0m27.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m27.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpikc8ykyg'] 0m27.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpikc8ykyg 0m27.3s INFO: PASS: All tests. 0m27.3s INFO: piuparts run ends. ret=0 End: 2024-02-18 16:10:03 GMT