Start: 2025-03-17 14:41:36 GMT Package: shasta Source: shasta (0.12.0-1) Version: 0.12.0-1+b2 Installed-Size: 2599 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 14), python3-shasta (= 0.12.0-1+b2) Description: nanopore whole genome assembly (binaries and scripts) Homepage: https://github.com/chanzuckerberg/shasta Description-md5: 7bb8ac3039d8e82623b175abb8ab2e67 Section: science Priority: optional Filename: pool/main/s/shasta/shasta_0.12.0-1+b2_amd64.deb Size: 625376 MD5sum: 975300cffd2ee20c3926a83daebf1ef8 SHA256: 62cd7c134c785739c3327404b9a71edad73da7616538967109c8e7d533f1510d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt shasta=0.12.0-1+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt shasta=0.12.0-1+b2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxnv69qkn 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxnv69qkn 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxnv69qkn/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmpxnv69qkn/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'update'] 0m3.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7385 kB] Fetched 17.7 MB in 2s (9486 kB/s) Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libselinux1 libsemanage-common libsemanage2 libsepol2 login.defs passwd 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1898 kB of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.17.3-2 [186 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.8.1-1 [7812 B] Get:4 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.8.1-1 [95.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.17.3-2 [1228 kB] Fetched 1898 kB in 0s (28.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) over (3.8-4) ... Setting up libselinux1:amd64 (3.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4908 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.3-2_all.deb ... Unpacking login.defs (1:4.17.3-2) over (1:4.17.3-1) ... Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... Unpacking libsemanage-common (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) over (3.8-1) ... Preparing to unpack .../libsemanage2_3.8.1-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.8.1-1) over (3.8-1+b1) ... Preparing to unpack .../passwd_1%3a4.17.3-2_amd64.deb ... Unpacking passwd (1:4.17.3-2) over (1:4.17.3-1) ... Setting up login.defs (1:4.17.3-2) ... Setting up libsemanage-common (3.8.1-1) ... Setting up libsepol2:amd64 (3.8.1-1) ... Setting up libsemanage2:amd64 (3.8.1-1) ... Setting up passwd (1:4.17.3-2) ... Processing triggers for libc-bin (2.41-6) ... 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-yf', 'dist-upgrade'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s DUMP: 0582dbe94023bf6cf8b7d535b964b205 - 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s INFO: Running scripts post_setup 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_dummy_users'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_fake-essential'] 0m7.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.68). The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1757 kB of archives. After this operation, 4946 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0050 [42.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] Preconfiguring packages ... Fetched 1757 kB in 0s (26.6 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4907 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0050_all.deb ... Moving old data out of the way Unpacking ucf (3.0050) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.24) ... Setting up procps (2:4.0.4-7) ... Setting up ucf (3.0050) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-6) ... 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_fake-essential'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'clean'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'clean'] 0m7.3s DEBUG: Recording chroot state 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.8s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-divert', '--list'] 0m7.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-divert', '--list'] 0m7.8s INFO: Running scripts is_testable 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/is_testable_uninstallable'] 0m7.8s INFO: apt-cache does not know about any of the requested packages 0m7.8s INFO: Running scripts pre_test 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_test_exceptions'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_test_root_password'] 0m7.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_test_root_password'] 0m7.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m8.7s DEBUG: No broken symlinks as far as we can find. 0m8.7s INFO: Running scripts pre_install 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_extras'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'show', '--no-all-versions', 'shasta=0.12.0-1+b2'] 0m9.7s DUMP: Package: shasta Source: shasta (0.12.0-1) Version: 0.12.0-1+b2 Installed-Size: 2599 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 14), python3-shasta (= 0.12.0-1+b2) Description-en: nanopore whole genome assembly (binaries and scripts) De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells. . Computational methods used by the Shasta assembler include: . * Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors in homopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. . * Using in some phases of the computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ?? 10). . Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers. . This package contains the executable binaries (tools) and accommodating scripts. Description-md5: 7bb8ac3039d8e82623b175abb8ab2e67 Homepage: https://github.com/chanzuckerberg/shasta Section: science Priority: optional Filename: pool/main/s/shasta/shasta_0.12.0-1+b2_amd64.deb Size: 625376 MD5sum: 975300cffd2ee20c3926a83daebf1ef8 SHA256: 62cd7c134c785739c3327404b9a71edad73da7616538967109c8e7d533f1510d 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'show', '--no-all-versions', 'shasta=0.12.0-1+b2'] 0m9.7s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: libboost-chrono1.83.0t64 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 14), python3-shasta (= 0.12.0-1+b2) Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m9.7s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpmawf9vaz/piuparts-depends-dummy'] 0m9.7s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpmawf9vaz/piuparts-depends-dummy.deb'. 0m9.7s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpmawf9vaz/piuparts-depends-dummy'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.7s DUMP: 2.9.33 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m9.7s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpmawf9vaz/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpxnv69qkn/tmp 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m16.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libblas3 libboost-chrono1.83.0t64 libboost-program-options1.83.0 libboost-serialization1.83.0 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libperl5.40 libpng16-16t64 libpython3-stdlib libpython3.13 libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libspoa7.0.0 libsqlite3-0 libuv1t64 media-types ncbi-blast+ ncbi-data netbase perl perl-modules-5.40 python3 python3-minimal python3-shasta python3.13 python3.13-minimal readline-common Suggested packages: gdbm-l10n perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates The following NEW packages will be installed: libblas3 libboost-chrono1.83.0t64 libboost-program-options1.83.0 libboost-serialization1.83.0 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libperl5.40 libpng16-16t64 libpython3-stdlib libpython3.13 libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libspoa7.0.0 libsqlite3-0 libuv1t64 media-types ncbi-blast+ ncbi-data netbase perl perl-modules-5.40 piuparts-depends-dummy python3 python3-minimal python3-shasta python3.13 python3.13-minimal readline-common 0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 43.9 MB/43.9 MB of archives. After this operation, 209 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [722 B] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.2-2 [859 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.0-1 [107 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.2-2 [2210 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-2 [913 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [1952 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.2-2 [746 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-2 [4315 kB] Get:20 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-2 [267 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4.1+b2 [240 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.1+b2 [347 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4.1+b2 [334 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:27 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:28 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libpython3.13 amd64 3.13.2-2 [2155 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libspoa7.0.0 amd64 4.1.4-2+b1 [74.1 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:37 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get:38 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-shasta amd64 0.12.0-1+b2 [2253 kB] Fetched 43.9 MB in 0s (190 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5455 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.0-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-2_amd64.deb ... Unpacking python3.13-minimal (3.13.2-2) ... Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... Setting up libexpat1:amd64 (2.7.0-1) ... Setting up python3.13-minimal (3.13.2-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5789 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.46.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-2) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) ... Selecting previously unselected package python3.13. 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Preparing to unpack .../00-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../01-perl-modules-5.40_5.40.1-2_all.deb ... Unpacking perl-modules-5.40 (5.40.1-2) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../02-libgdbm6t64_1.24-2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.24-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../03-libgdbm-compat4t64_1.24-2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.24-2) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../04-libperl5.40_5.40.1-2_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-2) ... Selecting previously unselected package perl. Preparing to unpack .../05-perl_5.40.1-2_amd64.deb ... Unpacking perl (5.40.1-2) ... Selecting previously unselected package libblas3:amd64. 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Preparing to unpack .../11-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../12-liblapack3_3.12.1-2_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-2) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../13-liblmdb0_0.9.31-1+b2_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../14-libmbedcrypto16_3.6.2-3_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.2-3) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../15-libmbedx509-7_3.6.2-3_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.2-3) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../16-libmbedtls21_3.6.2-3_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.2-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../17-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../18-libpng16-16t64_1.6.47-1.1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.47-1.1) ... Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../19-libpython3.13_3.13.2-2_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.2-2) ... Selecting previously unselected package libspoa7.0.0:amd64. Preparing to unpack .../20-libspoa7.0.0_4.1.4-2+b1_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.1.4-2+b1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../21-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../22-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../23-ncbi-blast+_2.16.0+ds-6+b1_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-6+b1) ... Selecting previously unselected package python3-shasta. Preparing to unpack .../24-python3-shasta_0.12.0-1+b2_amd64.deb ... Unpacking python3-shasta (0.12.0-1+b2) ... Selecting previously unselected package piuparts-depends-dummy. Preparing to unpack .../25-piuparts-depends-dummy.deb ... Unpacking piuparts-depends-dummy (0.invalid.0) ... Setting up media-types (13.0.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-5) ... Setting up libboost-program-options1.83.0:amd64 (1.83.0-4.1+b2) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libsqlite3-0:amd64 (3.46.1-2) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.1+b2) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-4.1+b2) ... Setting up libspoa7.0.0:amd64 (4.1.4-2+b1) ... Setting up libpng16-16t64:amd64 (1.6.47-1.1) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up perl-modules-5.40 (5.40.1-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.2-3) ... Setting up readline-common (8.2-6) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libperl5.40:amd64 (5.40.1-2) ... Setting up perl (5.40.1-2) ... Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... Setting up libpython3-stdlib:amd64 (3.13.2-2) ... Setting up libpython3.13:amd64 (3.13.2-2) ... Setting up python3.13 (3.13.2-2) ... Setting up python3 (3.13.2-2) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up python3-shasta (0.12.0-1+b2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m16.3s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m16.3s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpxnv69qkn/./tmp/piuparts-depends-dummy.deb 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m16.3s DUMP: piuparts-depends-dummy install ok installed 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m16.3s DUMP: (Reading database ... 8828 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'clean'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'clean'] 0m16.3s DEBUG: Recording chroot state 0m16.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m17.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m17.9s DEBUG: No broken symlinks as far as we can find. 0m17.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy'] 0m18.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy', 'shasta'] 0m18.7s DUMP: shasta: Installed: (none) Candidate: 0.12.0-1+b2 Version table: 0.12.0-1+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy', 'shasta'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', 'install', 'shasta=0.12.0-1+b2'] 0m20.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: shasta 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 625 kB of archives. After this operation, 2661 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 shasta amd64 0.12.0-1+b2 [625 kB] Fetched 625 kB in 0s (4693 kB/s) Selecting previously unselected package shasta. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8828 files and directories currently installed.) Preparing to unpack .../shasta_0.12.0-1+b2_amd64.deb ... Unpacking shasta (0.12.0-1+b2) ... Setting up shasta (0.12.0-1+b2) ... 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', 'install', 'shasta=0.12.0-1+b2'] 0m20.0s INFO: Running scripts post_install 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_install_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_install_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'systemd-tmpfiles', '--cat-config'] 0m20.0s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m20.0s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'systemd-tmpfiles', '--cat-config'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'remove', 'shasta'] 0m20.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libblas3 libboost-chrono1.83.0t64 libboost-program-options1.83.0 libboost-serialization1.83.0 libexpat1 libffi8 libgfortran5 libgomp1 liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libpng16-16t64 libpython3-stdlib libpython3.13 libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libspoa7.0.0 libsqlite3-0 libuv1t64 media-types ncbi-blast+ ncbi-data python3 python3-minimal python3-shasta python3.13 python3.13-minimal readline-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: shasta 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 2661 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8990 files and directories currently installed.) Removing shasta (0.12.0-1+b2) ... 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'remove', 'shasta'] 0m20.9s INFO: Reinstalling after remove 0m20.9s INFO: Running scripts pre_install 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_database-server'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_database-server'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_exceptions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_exceptions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_extras'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_extras'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy'] 0m20.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy', 'shasta'] 0m21.0s DUMP: shasta: Installed: (none) Candidate: 0.12.0-1+b2 Version table: 0.12.0-1+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy', 'shasta'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', 'install', 'shasta=0.12.0-1+b2'] 0m21.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: shasta 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/625 kB of archives. After this operation, 2661 kB of additional disk space will be used. Selecting previously unselected package shasta. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8828 files and directories currently installed.) Preparing to unpack .../shasta_0.12.0-1+b2_amd64.deb ... Unpacking shasta (0.12.0-1+b2) ... Setting up shasta (0.12.0-1+b2) ... 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', 'install', 'shasta=0.12.0-1+b2'] 0m21.9s INFO: Running scripts post_install 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_install_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_install_exceptions'] 0m21.9s INFO: Running scripts pre_install 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_database-server'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_database-server'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_exceptions'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_extras'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_extras'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy'] 0m21.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy', 'shasta'] 0m22.0s DUMP: shasta: Installed: 0.12.0-1+b2 Candidate: 0.12.0-1+b2 Version table: *** 0.12.0-1+b2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-cache', 'policy', 'shasta'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', 'install', '--reinstall', 'shasta=0.12.0-1+b2'] 0m22.9s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/625 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8990 files and directories currently installed.) Preparing to unpack .../shasta_0.12.0-1+b2_amd64.deb ... Unpacking shasta (0.12.0-1+b2) over (0.12.0-1+b2) ... Setting up shasta (0.12.0-1+b2) ... 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', '-y', 'install', '--reinstall', 'shasta=0.12.0-1+b2'] 0m22.9s INFO: Running scripts post_install 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_install_exceptions'] 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_install_exceptions'] 0m22.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m23.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m24.1s DEBUG: No broken symlinks as far as we can find. 0m24.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', '-ac', '--ignore-obsolete'] 0m25.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', '-ac', '--ignore-obsolete'] 0m25.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.6s DUMP: 0.15.6 0m25.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.6s INFO: Running adequate version 0.15.6 now. 0m25.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'shasta'] 0m25.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'shasta'] 0m25.7s INFO: Running scripts pre_remove 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_exceptions'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_exceptions'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.9s DUMP: install ok installed apt apt 2.9.33 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1.1+b1 install ok installed bsdutils bsdutils 1:2.40.4-5 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.33 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblkid1:amd64 libblkid1 2.40.4-5 install ok installed libboost-chrono1.83.0t64:amd64 libboost-chrono1.83.0t64 1.83.0-4.1+b2 install ok installed libboost-program-options1.83.0:amd64 libboost-program-options1.83.0 1.83.0-4.1+b2 install ok installed libboost-serialization1.83.0:amd64 libboost-serialization1.83.0 1.83.0-4.1+b2 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libexpat1:amd64 libexpat1 2.7.0-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.24-2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.24-2 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.6.4-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.2-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.2-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.2-3 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-5 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1.1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2 install ok installed libpython3.13:amd64 libpython3.13 3.13.2-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.2-2 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.2-2 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2+b1 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-5 install ok installed libspoa7.0.0:amd64 libspoa7.0.0 4.1.4-2+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.4-3 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.4-3 install ok installed libuuid1:amd64 libuuid1 2.40.4-5 install ok installed libuv1t64:amd64 libuv1t64 1.50.0-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.40.4-5 install ok installed login.defs login.defs 1:4.17.3-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.40.4-5 install ok installed ncbi-blast+ ncbi-blast+ 2.16.0+ds-6+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.3-2 install ok installed perl perl 5.40.1-2 install ok installed perl-base perl-base 5.40.1-2 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed python3 python3 3.13.2-2 install ok installed python3-minimal python3-minimal 3.13.2-2 install ok installed python3-shasta python3-shasta 0.12.0-1+b2 install ok installed python3.13 python3.13 3.13.2-2 install ok installed python3.13-minimal python3.13-minimal 3.13.2-2 install ok installed readline-common readline-common 8.2-6 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed shasta shasta 0.12.0-1+b2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed ucf ucf 3.0050 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libboost-chrono1.83.0t64:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-serialization1.83.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3-shasta', 'python3.13', 'python3.13-minimal', 'readline-common', 'shasta'] 0m28.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas3 libboost-chrono1.83.0t64 libboost-program-options1.83.0 libboost-serialization1.83.0 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libnghttp2-14 libperl5.40 libpng16-16t64 libpython3-stdlib libpython3.13 libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libspoa7.0.0 libsqlite3-0 libuv1t64 media-types ncbi-blast+ ncbi-data netbase perl perl-modules-5.40 python3 python3-minimal python3-shasta python3.13 python3.13-minimal readline-common shasta 0 upgraded, 0 newly installed, 39 to remove and 0 not upgraded. After this operation, 212 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8990 files and directories currently installed.) Removing shasta (0.12.0-1+b2) ... Removing python3-shasta (0.12.0-1+b2) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libblas3:amd64 (3.12.1-2) ... Removing libboost-chrono1.83.0t64:amd64 (1.83.0-4.1+b2) ... Removing libboost-program-options1.83.0:amd64 (1.83.0-4.1+b2) ... Removing libboost-serialization1.83.0:amd64 (1.83.0-4.1+b2) ... Removing ncbi-blast+ (2.16.0+ds-6+b1) ... Removing python3 (3.13.2-2) ... Removing python3-minimal (3.13.2-2) ... Removing python3.13 (3.13.2-2) ... Removing python3.13-minimal (3.13.2-2) ... Removing libpython3.13:amd64 (3.13.2-2) ... Removing libexpat1:amd64 (2.7.0-1) ... Removing libpython3-stdlib:amd64 (3.13.2-2) ... Removing libpython3.13-stdlib:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.4.7-1) ... Removing perl (5.40.1-2) ... Removing libperl5.40:amd64 (5.40.1-2) ... Removing libgdbm-compat4t64:amd64 (1.24-2) ... Removing libgdbm6t64:amd64 (1.24-2) ... Removing libgfortran5:amd64 (14.2.0-19) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing liblmdb0:amd64 (0.9.31-1+b2) ... Removing libmbedtls21:amd64 (3.6.2-3) ... Removing libmbedx509-7:amd64 (3.6.2-3) ... Removing libmbedcrypto16:amd64 (3.6.2-3) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libpng16-16t64:amd64 (1.6.47-1.1) ... Removing libpython3.13-minimal:amd64 (3.13.2-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libspoa7.0.0:amd64 (4.1.4-2+b1) ... Removing libsqlite3-0:amd64 (3.46.1-2) ... Removing libuv1t64:amd64 (1.50.0-2) ... Removing media-types (13.0.0) ... Removing ncbi-data (6.1.20170106+dfsg2-5) ... Removing netbase (6.5) ... Removing perl-modules-5.40 (5.40.1-2) ... Removing readline-common (8.2-6) ... Processing triggers for libc-bin (2.41-6) ... 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'remove', '--allow-remove-essential', 'libblas3:amd64', 'libboost-chrono1.83.0t64:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-serialization1.83.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3-shasta', 'python3.13', 'python3.13-minimal', 'readline-common', 'shasta'] 0m28.3s INFO: Running scripts post_remove 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_remove_cleanup'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_remove_cleanup'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_remove_exceptions'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_remove_exceptions'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', 'libblas3:amd64', 'libboost-chrono1.83.0t64:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-serialization1.83.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3-shasta', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m28.3s DUMP: dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-chrono1.83.0t64 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-serialization1.83.0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.13 which isn't installed (Reading database ... 5468 files and directories currently installed.) Purging configuration files for libpython3.13-minimal:amd64 (3.13.2-2) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove libspoa7.0.0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libuv1t64 which isn't installed Purging configuration files for media-types (13.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-5) ... Purging configuration files for netbase (6.5) ... Purging configuration files for perl (5.40.1-2) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed Purging configuration files for python3 (3.13.2-2) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-shasta which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.2-2) ... Purging configuration files for readline-common (8.2-6) ... 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', 'libblas3:amd64', 'libboost-chrono1.83.0t64:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-serialization1.83.0:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libspoa7.0.0:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3-shasta', 'python3.13', 'python3.13-minimal', 'readline-common'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', 'shasta'] 0m28.4s DUMP: dpkg: warning: ignoring request to remove shasta which isn't installed 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', 'shasta'] 0m28.4s INFO: Running scripts post_purge 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_purge_exceptions'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_purge_exceptions'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_purge_manual_cleanup'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_purge_manual_cleanup'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', '--pending'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--purge', '--pending'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--remove', '--pending'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg', '--remove', '--pending'] 0m28.4s INFO: Running scripts post_test 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_test_exceptions'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'tmp/scripts/post_test_exceptions'] 0m28.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m29.2s DEBUG: No broken symlinks as far as we can find. 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-divert', '--list'] 0m29.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'dpkg-divert', '--list'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'clean'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn', 'apt-get', 'clean'] 0m29.3s DEBUG: Recording chroot state 0m30.3s INFO: PASS: Installation and purging test. 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/shm'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/shm'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/console'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/console'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/ptmx'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/ptmx'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/pts'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/dev/pts'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/proc'] 0m31.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn/proc'] 0m31.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m31.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxnv69qkn'] 0m31.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxnv69qkn 0m31.2s INFO: PASS: All tests. 0m31.2s INFO: piuparts run ends. ret=0 End: 2025-03-17 14:42:07 GMT