Start: 2025-04-09 10:52:17 GMT Package: smrtanalysis-dev Source: smrtanalysis Version: 0~20210112 Installed-Size: 9 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-pbcore, python3-pbcommand, python3-pbconsensuscore, libpbseq-dev, libpbbam-dev Suggests: python-pbgenomicconsensus, python-pbh5tools, python-pbalign, python-kineticstools Description: develepment libraries for smrtanalysis Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Description-md5: 1a10b42e923f01861162fa9b4749811c Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/s/smrtanalysis/smrtanalysis-dev_0~20210112_amd64.deb Size: 3164 MD5sum: 18f65ca6f6f50917a62b9885a731e3f8 SHA256: dc98760b6dc35c4d7fbfd90c77e7050e0acb4be569bf843d969e354d49a95e0c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt 'smrtanalysis-dev=0~20210112' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.5.2~202503162239~1.5.1-10-g345d5865 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --install-remove-install --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-others --scriptsdir /etc/piuparts/scripts-leftovers --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt 'smrtanalysis-dev=0~20210112' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-34-amd64 #1 SMP Debian 5.10.234-1 (2025-02-24) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp3ekjfj53 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp3ekjfj53 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp3ekjfj53/tmp/scripts/ 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-leftovers to /srv/piuparts.debian.org/tmp/tmp3ekjfj53/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'update'] 0m2.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7416 kB] Fetched 17.8 MB in 1s (12.4 MB/s) Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libssl3t64 openssl-provider-legacy 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2739 kB of archives. After this operation, 645 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.0-1 [307 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.0-1 [2432 kB] Fetched 2739 kB in 0s (35.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4927 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.0-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.0-1) over (3.4.1-1) ... Setting up openssl-provider-legacy (3.5.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4927 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.0-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.0-1) over (3.4.1-1) ... Setting up libssl3t64:amd64 (3.5.0-1) ... Processing triggers for libc-bin (2.41-6) ... 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-yf', 'dist-upgrade'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s DUMP: 18b305595815f83b09c2fe784f2b4851 - 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s INFO: Running scripts post_setup 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_fake-essential'] 0m4.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... init-system-helpers is already the newest version (1.68). The following additional packages will be installed: libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf Suggested packages: dbconfig-mysql | dbconfig-pgsql | dbconfig-sqlite3 | dbconfig-no-thanks Recommended packages: libgpm2 psmisc linux-sysctl-defaults The following NEW packages will be installed: dbconfig-common libncursesw6 libproc2-0 libtext-charwidth-perl libtext-wrapi18n-perl procps sensible-utils ucf 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 1757 kB of archives. After this operation, 4947 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:6 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:7 http://deb.debian.org/debian sid/main amd64 ucf all 3.0051 [42.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 dbconfig-common all 2.0.24 [592 kB] Preconfiguring packages ... Fetched 1757 kB in 0s (23.3 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4926 files and directories currently installed.) Preparing to unpack .../0-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../1-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../2-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../3-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../4-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../5-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../6-ucf_3.0051_all.deb ... Moving old data out of the way Unpacking ucf (3.0051) ... Selecting previously unselected package dbconfig-common. Preparing to unpack .../7-dbconfig-common_2.0.24_all.deb ... Unpacking dbconfig-common (2.0.24) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up sensible-utils (0.0.24) ... Setting up procps (2:4.0.4-7) ... Setting up ucf (3.0051) ... Setting up dbconfig-common (2.0.24) ... Creating config file /etc/dbconfig-common/config with new version Processing triggers for libc-bin (2.41-6) ... 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_fake-essential'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'clean'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'clean'] 0m4.2s DEBUG: Recording chroot state 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-1.1+b2 install ok installed bsdutils bsdutils 1:2.41-3 install ok installed coreutils coreutils 9.6-2 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-3 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libuuid1:amd64 libuuid1 2.41-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-3 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-2 install ok installed procps procps 2:4.0.4-7 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-1 install ok installed ucf ucf 3.0051 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-divert', '--list'] 0m4.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-divert', '--list'] 0m4.5s INFO: Running scripts is_testable 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: apt-cache does not know about any of the requested packages 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_test_root_password'] 0m4.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_test_root_password'] 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 0m4.9s DEBUG: No broken symlinks as far as we can find. 0m4.9s INFO: Running scripts pre_install 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'show', '--no-all-versions', 'smrtanalysis-dev=0~20210112'] 0m5.5s DUMP: Package: smrtanalysis-dev Source: smrtanalysis Version: 0~20210112 Installed-Size: 9 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-pbcore, python3-pbcommand, python3-pbconsensuscore, libpbseq-dev, libpbbam-dev Suggests: python-pbgenomicconsensus, python-pbh5tools, python-pbalign, python-kineticstools Description-en: develepment libraries for smrtanalysis SMRT? Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences?? SMRT technology. Users can choose from a variety of analysis protocols that utilize PacBio? and third-party tools. Analysis protocols include de novo genome assembly, cDNA mapping, DNA base-modification detection, and long-amplicon analysis to determine phased consensus sequences. . This is a metapackage that depends on the SMRTAnalysis development tools. Description-md5: 1a10b42e923f01861162fa9b4749811c Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/s/smrtanalysis/smrtanalysis-dev_0~20210112_amd64.deb Size: 3164 MD5sum: 18f65ca6f6f50917a62b9885a731e3f8 SHA256: dc98760b6dc35c4d7fbfd90c77e7050e0acb4be569bf843d969e354d49a95e0c 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'show', '--no-all-versions', 'smrtanalysis-dev=0~20210112'] 0m5.5s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: piuparts developers team Depends: python3-pbcore, python3-pbcommand, python3-pbconsensuscore, libpbseq-dev, libpbbam-dev Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed 0m5.5s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8f9is07m/piuparts-depends-dummy'] 0m5.5s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp8f9is07m/piuparts-depends-dummy.deb'. 0m5.5s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8f9is07m/piuparts-depends-dummy'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.5s DUMP: 3.0.0 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m5.5s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp8f9is07m/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp3ekjfj53/tmp 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m35.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates comerr-dev fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1 libblas3 libblasr-dev libblasr5.3.5 libbrotli-dev libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdeflate-dev libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhts-dev libhts3t64 libhtscodecs2 libidn2-0 libidn2-dev libimagequant0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblzma-dev libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpbbam-dev libpbbam2.4.0 libpbcopper-dev libpbcopper2.3.0 libpbdata-dev libpbihdf-dev libpbseq-dev libpixman-1-0 libpkgconf3 libpng16-16t64 libpsl-dev libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libssh2-1-dev libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev libtiff6 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libzstd-dev linux-libc-dev media-types netbase nettle-dev openssl pkgconf pkgconf-bin python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-freetype python3-idna python3-iso8601 python3-minimal python3-numpy python3-numpy-dev python3-pbcommand python3-pbconsensuscore python3-pbcore python3-pil python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-tz python3-urllib3 python3.13 python3.13-minimal readline-common rpcsvc-proto sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Suggested packages: doc-base fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre krb5-doc libc-devtools glibc-doc manpages-dev dpkg-dev libcurl4-doc libidn-dev low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-user libhdf5-doc liblcms2-utils liblzma-doc libnghttp2-doc p11-kit-doc libssl-doc python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy python3-igraph raxml samtools t-coffee wise python-charset-normalizer-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python-pbcore-doc python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: bzip2-doc manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libldap-common publicsuffix libsasl2-modules libtasn1-doc python-biopython-doc ncbi-blast+ python3-h5py python3-olefile fonts-dejavu-extra The following NEW packages will be installed: ca-certificates comerr-dev fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1 libblas3 libblasr-dev libblasr5.3.5 libbrotli-dev libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdeflate-dev libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhts-dev libhts3t64 libhtscodecs2 libidn2-0 libidn2-dev libimagequant0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblzma-dev libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpbbam-dev libpbbam2.4.0 libpbcopper-dev libpbcopper2.3.0 libpbdata-dev libpbihdf-dev libpbseq-dev libpixman-1-0 libpkgconf3 libpng16-16t64 libpsl-dev libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libssh2-1-dev libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev libtiff6 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libzstd-dev linux-libc-dev media-types netbase nettle-dev openssl piuparts-depends-dummy pkgconf pkgconf-bin python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-freetype python3-idna python3-iso8601 python3-minimal python3-numpy python3-numpy-dev python3-pbcommand python3-pbconsensuscore python3-pbcore python3-pil python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-tz python3-urllib3 python3.13 python3.13-minimal readline-common rpcsvc-proto sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded. Need to get 86.1 MB/86.1 MB of archives. After this operation, 331 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy amd64 0.invalid.0 [672 B] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.3-1 [861 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.3-1 [2210 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.3-1 [1954 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.3-1 [751 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.2-2 [28.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:18 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:20 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:21 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.5.0-1 [1491 kB] Get:22 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20241223 [164 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.41-6 [57.0 kB] Get:24 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.12.21-1 [2542 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:26 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.41-6 [1988 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get:29 http://deb.debian.org/debian sid/main amd64 comerr-dev amd64 2.1-1.47.2-1+b1 [56.0 kB] Get:30 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:31 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:36 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB] Get:37 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:38 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:39 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:40 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:41 http://deb.debian.org/debian sid/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-5 [9316 B] Get:45 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:54 http://deb.debian.org/debian sid/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:56 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:67 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.13.0-1 [374 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libpbcopper2.3.0 amd64 2.3.0+dfsg-2+b2 [736 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libpbbam2.4.0 amd64 2.4.0+dfsg-1+b4 [835 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libblasr5.3.5 amd64 5.3.5+dfsg-9+b2 [1121 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libpbcopper-dev amd64 2.3.0+dfsg-2+b2 [1072 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libpbdata-dev amd64 5.3.5+dfsg-9+b2 [41.0 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get:87 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3.1 [292 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get:101 http://deb.debian.org/debian sid/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libldap-dev amd64 2.6.9+dfsg-2 [311 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:106 http://deb.debian.org/debian sid/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:107 http://deb.debian.org/debian sid/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get:113 http://deb.debian.org/debian sid/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.5.0-1 [2949 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls-dev amd64 8.13.0-1 [492 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libdeflate-dev amd64 1.23-1+b1 [56.0 kB] Get:121 http://deb.debian.org/debian sid/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libpbbam-dev amd64 2.4.0+dfsg-1+b4 [88.4 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libblasr-dev amd64 5.3.5+dfsg-9+b2 [2119 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:144 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:145 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libpbihdf-dev amd64 5.3.5+dfsg-9+b2 [47.5 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libpbseq-dev amd64 5.3.5+dfsg-9+b2 [5224 B] Get:149 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-avro all 1.12.0+dfsg-1 [74.0 kB] Get:156 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:160 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:161 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get:162 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:163 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.85+dfsg-2+b1 [1672 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:166 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.10-1 [42.0 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-iso8601 all 2.1.0-2 [12.1 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.3.0-2 [114 kB] Get:170 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get:171 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.2-1 [151 kB] Get:172 http://deb.debian.org/debian sid/main amd64 python3-tz all 2025.2-1 [4072 B] Get:173 http://deb.debian.org/debian sid/main amd64 python3-pbcommand all 2.1.1+git20231020.28d1635-1 [102 kB] Get:174 http://deb.debian.org/debian sid/main amd64 python3-pbconsensuscore amd64 1.1.1+dfsg-7.1+b1 [724 kB] Get:175 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get:176 http://deb.debian.org/debian sid/main amd64 python3-pbcore all 2.1.2+dfsg-11 [2831 kB] Preconfiguring packages ... Fetched 86.1 MB in 2s (41.5 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5474 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-1_amd64.deb ... Unpacking python3.13-minimal (3.13.3-1) ... Setting up libpython3.13-minimal:amd64 (3.13.3-1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5808 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_amd64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../6-libpython3.13-stdlib_3.13.3-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.3-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../7-python3.13_3.13.3-1_amd64.deb ... Unpacking python3.13 (3.13.3-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.13.2-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6303 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-2_amd64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package python3-numpy-dev:amd64. 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Setting up libc-dev-bin (2.41-6) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up openssl (3.5.0-1) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libdeflate-dev:amd64 (1.23-1+b1) ... Setting up readline-common (8.2-6) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libpbcopper2.3.0:amd64 (2.3.0+dfsg-2+b2) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libaec-dev:amd64 (1.1.3-1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libngtcp2-dev:amd64 (1.11.0-1) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.84.1-1) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libldap-dev:amd64 (2.6.9+dfsg-2) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libpbcopper-dev:amd64 (2.3.0+dfsg-2+b2) ... Setting up libidn2-dev:amd64 (2.3.8-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up xml-core (0.19) ... Setting up libc6-dev:amd64 (2.41-6) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libpython3.13-stdlib:amd64 (3.13.3-1) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.2-2) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libnghttp2-dev:amd64 (1.64.0-1) ... Setting up python3.13 (3.13.3-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libpbdata-dev:amd64 (5.3.5+dfsg-9+b2) ... Setting up python3 (3.13.2-2) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up python3-iso8601 (2.1.0-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-avro (1.12.0+dfsg-1) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up comerr-dev:amd64 (2.1-1.47.2-1+b1) ... Setting up python3-idna (3.10-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-urllib3 (2.3.0-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up python3-cairo (1.27.0-2) ... Setting up libcurl4t64:amd64 (8.13.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up python3-pbconsensuscore (1.1.1+dfsg-7.1+b1) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-3.1) ... Setting up libcurl3t64-gnutls:amd64 (8.13.0-1) ... Setting up python3-pytz (2025.2-1) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-tz (2025.2-1) ... Setting up python3-pil:amd64 (11.1.0-5+b1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-pbcommand (2.1.1+git20231020.28d1635-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up python3-reportlab (4.3.1-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up libpbbam2.4.0:amd64 (2.4.0+dfsg-1+b4) ... Setting up libblasr5.3.5:amd64 (5.3.5+dfsg-9+b2) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up libcurl4-gnutls-dev:amd64 (8.13.0-1) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpbihdf-dev:amd64 (5.3.5+dfsg-9+b2) ... Setting up libhts-dev:amd64 (1.21+ds-1) ... Setting up libpbbam-dev:amd64 (2.4.0+dfsg-1+b4) ... Setting up libblasr-dev:amd64 (5.3.5+dfsg-9+b2) ... Setting up libpbseq-dev:amd64 (5.3.5+dfsg-9+b2) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-2+b1) ... Setting up python3-pbcore (2.1.2+dfsg-11) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 0m35.4s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 0m35.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp3ekjfj53/./tmp/piuparts-depends-dummy.deb 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m35.4s DUMP: piuparts-depends-dummy install ok installed 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m35.4s DUMP: (Reading database ... 18333 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'clean'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'clean'] 0m35.4s DEBUG: Recording chroot state 0m35.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 0m36.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 0m37.3s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Italic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-BoldItalic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Bold.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-Italic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-BoldItalic.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Oblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-BoldOblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Bold.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-Oblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-ExtraLight.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-ExtraLight.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-BoldOblique.ttf /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuMathTeXGyre.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuMathTeXGyre.ttf /usr/share/doc/liblzma-dev/THANKS -> ../liblzma5/THANKS 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy'] 0m37.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy', 'smrtanalysis-dev'] 0m37.8s DUMP: smrtanalysis-dev: Installed: (none) Candidate: 0~20210112 Version table: 0~20210112 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy', 'smrtanalysis-dev'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', 'install', 'smrtanalysis-dev=0~20210112'] 0m38.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: python-pbgenomicconsensus python-pbh5tools python-pbalign python-kineticstools The following NEW packages will be installed: smrtanalysis-dev 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 3164 B of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 smrtanalysis-dev amd64 0~20210112 [3164 B] Fetched 3164 B in 0s (14.8 kB/s) Selecting previously unselected package smrtanalysis-dev. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18333 files and directories currently installed.) Preparing to unpack .../smrtanalysis-dev_0~20210112_amd64.deb ... Unpacking smrtanalysis-dev (0~20210112) ... Setting up smrtanalysis-dev (0~20210112) ... 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', 'install', 'smrtanalysis-dev=0~20210112'] 0m38.5s INFO: Running scripts post_install 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_install_exceptions'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_install_exceptions'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'systemd-tmpfiles', '--cat-config'] 0m38.5s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m38.5s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'systemd-tmpfiles', '--cat-config'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'remove', 'smrtanalysis-dev'] 0m38.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: comerr-dev fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1 libblas3 libblasr-dev libblasr5.3.5 libbrotli-dev libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdeflate-dev libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhts-dev libhts3t64 libhtscodecs2 libidn2-dev libimagequant0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblzma-dev libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpbbam-dev libpbbam2.4.0 libpbcopper-dev libpbcopper2.3.0 libpbdata-dev libpbihdf-dev libpbseq-dev libpixman-1-0 libpkgconf3 libpng16-16t64 libpsl-dev libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libssh2-1-dev libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev libtiff6 libunbound8 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libzstd-dev linux-libc-dev media-types netbase nettle-dev pkgconf pkgconf-bin python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-freetype python3-idna python3-iso8601 python3-minimal python3-numpy python3-numpy-dev python3-pbcommand python3-pbconsensuscore python3-pbcore python3-pil python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-tz python3-urllib3 python3.13 python3.13-minimal readline-common rpcsvc-proto sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: smrtanalysis-dev 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 9216 B disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18336 files and directories currently installed.) Removing smrtanalysis-dev (0~20210112) ... 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'remove', 'smrtanalysis-dev'] 0m38.9s INFO: Reinstalling after remove 0m38.9s INFO: Running scripts pre_install 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_database-server'] 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_database-server'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_exceptions'] 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_exceptions'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_extras'] 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_extras'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy'] 0m39.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy'] 0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy', 'smrtanalysis-dev'] 0m39.0s DUMP: smrtanalysis-dev: Installed: (none) Candidate: 0~20210112 Version table: 0~20210112 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy', 'smrtanalysis-dev'] 0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', 'install', 'smrtanalysis-dev=0~20210112'] 0m39.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: python-pbgenomicconsensus python-pbh5tools python-pbalign python-kineticstools The following NEW packages will be installed: smrtanalysis-dev 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/3164 B of archives. After this operation, 9216 B of additional disk space will be used. Selecting previously unselected package smrtanalysis-dev. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18333 files and directories currently installed.) Preparing to unpack .../smrtanalysis-dev_0~20210112_amd64.deb ... Unpacking smrtanalysis-dev (0~20210112) ... Setting up smrtanalysis-dev (0~20210112) ... 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', 'install', 'smrtanalysis-dev=0~20210112'] 0m39.4s INFO: Running scripts post_install 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_install_exceptions'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_install_exceptions'] 0m39.5s INFO: Running scripts pre_install 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_database-server'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_database-server'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_exceptions'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_exceptions'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_extras'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_extras'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy'] 0m39.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy', 'smrtanalysis-dev'] 0m39.5s DUMP: smrtanalysis-dev: Installed: 0~20210112 Candidate: 0~20210112 Version table: *** 0~20210112 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-cache', 'policy', 'smrtanalysis-dev'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', 'install', '--reinstall', 'smrtanalysis-dev=0~20210112'] 0m40.0s DUMP: Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/3164 B of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18336 files and directories currently installed.) Preparing to unpack .../smrtanalysis-dev_0~20210112_amd64.deb ... Unpacking smrtanalysis-dev (0~20210112) over (0~20210112) ... Setting up smrtanalysis-dev (0~20210112) ... 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', '-y', 'install', '--reinstall', 'smrtanalysis-dev=0~20210112'] 0m40.0s INFO: Running scripts post_install 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_install_exceptions'] 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_install_exceptions'] 0m40.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 0m40.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 0m41.5s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-ExtraLight.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-ExtraLight.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuMathTeXGyre.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuMathTeXGyre.ttf (python3-reportlab) /usr/share/doc/liblzma-dev/THANKS -> ../liblzma5/THANKS (liblzma-dev:amd64) 0m42.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', '-ac', '--ignore-obsolete'] 0m43.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', '-ac', '--ignore-obsolete'] 0m43.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m43.2s DUMP: 0.15.6 0m43.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m43.2s INFO: Running adequate version 0.15.6 now. 0m43.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'smrtanalysis-dev'] 0m43.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'smrtanalysis-dev'] 0m43.2s INFO: Running scripts pre_remove 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m43.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m43.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_exceptions'] 0m45.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_exceptions'] 0m45.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m45.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/pre_remove_preseed_cleanup'] 0m45.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m45.3s DUMP: install ok installed apt apt 3.0.0 install ok installed base-files base-files 13.7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-1.1+b2 install ok installed bsdutils bsdutils 1:2.41-3 install ok installed ca-certificates ca-certificates 20241223 install ok installed comerr-dev:amd64 comerr-dev 2.1-1.47.2-1+b1 install ok installed coreutils coreutils 9.6-2 install ok installed dash dash 0.5.12-12 install ok installed dbconfig-common dbconfig-common 2.0.24 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-3 install ok installed dpkg dpkg 1.22.18 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.3 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hdf5-helpers hdf5-helpers 1.14.5+repack-3 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed krb5-multidev:amd64 krb5-multidev 1.21.3-5 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaec-dev:amd64 libaec-dev 1.1.3-1+b1 install ok installed libaec0:amd64 libaec0 1.1.3-1+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.0 install ok installed libatomic1:amd64 libatomic1 14.2.0-19 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblas3:amd64 libblas3 3.12.1-2 install ok installed libblasr-dev:amd64 libblasr-dev 5.3.5+dfsg-9+b2 install ok installed libblasr5.3.5:amd64 libblasr5.3.5 5.3.5+dfsg-9+b2 install ok installed libblkid1:amd64 libblkid1 2.41-3 install ok installed libbrotli-dev:amd64 libbrotli-dev 1.1.0-2+b7 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-6 install ok installed libc-bin libc-bin 2.41-6 install ok installed libc-dev-bin libc-dev-bin 2.41-6 install ok installed libc6:amd64 libc6 2.41-6 install ok installed libc6-dev:amd64 libc6-dev 2.41-6 install ok installed libcairo2:amd64 libcairo2 1.18.4-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.38-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.13.0-1 install ok installed libcurl4-gnutls-dev:amd64 libcurl4-gnutls-dev 8.13.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.13.0-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.278 install ok installed libdeflate-dev:amd64 libdeflate-dev 1.23-1+b1 install ok installed libdeflate0:amd64 libdeflate0 1.23-1+b1 install ok installed libevent-2.1-7t64:amd64 libevent-2.1-7t64 2.1.12-stable-10+b1 install ok installed libexpat1:amd64 libexpat1 2.7.1-1 install ok installed libffi8:amd64 libffi8 3.4.7-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.3 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1+b2 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-19 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.84.1-1 install ok installed libgmp-dev:amd64 libgmp-dev 2:6.3.0+dfsg-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.3.0+dfsg-3 install ok installed libgnutls-dane0t64:amd64 libgnutls-dane0t64 3.8.9-2 install ok installed libgnutls-openssl27t64:amd64 libgnutls-openssl27t64 3.8.9-2 install ok installed libgnutls28-dev:amd64 libgnutls28-dev 3.8.9-2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.9-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-19 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libgssrpc4t64:amd64 libgssrpc4t64 1.21.3-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 10.2.0-1+b1 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.5+repack-3 install ok installed libhdf5-cpp-310:amd64 libhdf5-cpp-310 1.14.5+repack-3 install ok installed libhdf5-dev libhdf5-dev 1.14.5+repack-3 install ok installed libhdf5-fortran-310:amd64 libhdf5-fortran-310 1.14.5+repack-3 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.5+repack-3 install ok installed libhdf5-hl-cpp-310:amd64 libhdf5-hl-cpp-310 1.14.5+repack-3 install ok installed libhdf5-hl-fortran-310:amd64 libhdf5-hl-fortran-310 1.14.5+repack-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhts-dev:amd64 libhts-dev 1.21+ds-1 install ok installed libhts3t64:amd64 libhts3t64 1.21+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-2 install ok installed libidn2-dev:amd64 libidn2-dev 2.3.8-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.1.5-3.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3.1 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.1.5-3.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkadm5clnt-mit12:amd64 libkadm5clnt-mit12 1.21.3-5 install ok installed libkadm5srv-mit12:amd64 libkadm5srv-mit12 1.21.3-5 install ok installed libkdb5-10t64:amd64 libkdb5-10t64 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-5 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5-dev:amd64 libkrb5-dev 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblapack3:amd64 liblapack3 3.12.1-2 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-3 install ok installed liblcms2-2:amd64 liblcms2-2 2.16-2 install ok installed libldap-dev:amd64 libldap-dev 2.6.9+dfsg-2 install ok installed libldap2:amd64 libldap2 2.6.9+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma-dev:amd64 liblzma-dev 5.8.1-1 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-3 install ok installed libncursesw6:amd64 libncursesw6 6.5+20250216-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.64.0-1 install ok installed libnghttp2-dev:amd64 libnghttp2-dev 1.64.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.8.0-1 install ok installed libnghttp3-dev:amd64 libnghttp3-dev 1.8.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.11.0-1 install ok installed libngtcp2-crypto-gnutls-dev:amd64 libngtcp2-crypto-gnutls-dev 1.11.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.11.0-1 install ok installed libngtcp2-dev:amd64 libngtcp2-dev 1.11.0-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.3-2 install ok installed libp11-kit-dev:amd64 libp11-kit-dev 0.25.5-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-3 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpbbam-dev:amd64 libpbbam-dev 2.4.0+dfsg-1+b4 install ok installed libpbbam2.4.0:amd64 libpbbam2.4.0 2.4.0+dfsg-1+b4 install ok installed libpbcopper-dev:amd64 libpbcopper-dev 2.3.0+dfsg-2+b2 install ok installed libpbcopper2.3.0:amd64 libpbcopper2.3.0 2.3.0+dfsg-2+b2 install ok installed libpbdata-dev:amd64 libpbdata-dev 5.3.5+dfsg-9+b2 install ok installed libpbihdf-dev:amd64 libpbihdf-dev 5.3.5+dfsg-9+b2 install ok installed libpbseq-dev:amd64 libpbseq-dev 5.3.5+dfsg-9+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.44.0-3 install ok installed libpkgconf3:amd64 libpkgconf3 1.8.1-4 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.47-1.1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-7 install ok installed libpsl-dev:amd64 libpsl-dev 0.21.2-1.1+b1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.2-2 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.3-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.3-1 install ok installed libraqm0:amd64 libraqm0 0.10.2-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-6 install ok installed librtmp-dev:amd64 librtmp-dev 2.4+20151223.gitfa8646d.1-2+b5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b5 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-2 install ok installed libssh2-1-dev:amd64 libssh2-1-dev 1.11.1-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-1 install ok installed libssl-dev:amd64 libssl-dev 3.5.0-1 install ok installed libssl3t64:amd64 libssl3t64 3.5.0-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.5-2 install ok installed libsz2:amd64 libsz2 1.1.3-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.20.0-2 install ok installed libtasn1-6-dev:amd64 libtasn1-6-dev 4.20.0-2 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-11+b4 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-10 install ok installed libtiff6:amd64 libtiff6 4.7.0-3 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.5-2 install ok installed libunbound8:amd64 libunbound8 1.22.0-1+b1 install ok installed libunistring5:amd64 libunistring5 1.3-2 install ok installed libuuid1:amd64 libuuid1 2.41-3 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.5.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b3 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.12.21-1 install ok installed login login 1:4.16.0-2+really2.41-3 install ok installed login.defs login.defs 1:4.17.4-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed media-types media-types 13.0.0 install ok installed mount mount 2.41-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed nettle-dev:amd64 nettle-dev 3.10.1-1 install ok installed openssl openssl 3.5.0-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.0-1 install ok installed passwd passwd 1:4.17.4-1 install ok installed perl-base perl-base 5.40.1-2 install ok installed pkgconf:amd64 pkgconf 1.8.1-4 install ok installed pkgconf-bin pkgconf-bin 1.8.1-4 install ok installed procps procps 2:4.0.4-7 install ok installed python3 python3 3.13.2-2 install ok installed python3-avro python3-avro 1.12.0+dfsg-1 install ok installed python3-biopython python3-biopython 1.85+dfsg-2+b1 install ok installed python3-cairo python3-cairo 1.27.0-2 install ok installed python3-certifi python3-certifi 2025.1.31+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.1-1+b1 install ok installed python3-freetype python3-freetype 2.5.1-1 install ok installed python3-idna python3-idna 3.10-1 install ok installed python3-iso8601 python3-iso8601 2.1.0-2 install ok installed python3-minimal python3-minimal 3.13.2-2 install ok installed python3-numpy python3-numpy 1:2.2.4+ds-1 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.2.4+ds-1 install ok installed python3-pbcommand python3-pbcommand 2.1.1+git20231020.28d1635-1 install ok installed python3-pbconsensuscore python3-pbconsensuscore 1.1.1+dfsg-7.1+b1 install ok installed python3-pbcore python3-pbcore 2.1.2+dfsg-11 install ok installed python3-pil:amd64 python3-pil 11.1.0-5+b1 install ok installed python3-pysam python3-pysam 0.23.0+ds-1+b1 install ok installed python3-pytz python3-pytz 2025.2-1 install ok installed python3-reportlab python3-reportlab 4.3.1-1 install ok installed python3-requests python3-requests 2.32.3+dfsg-5 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-tz python3-tz 2025.2-1 install ok installed python3-urllib3 python3-urllib3 2.3.0-2 install ok installed python3.13 python3.13 3.13.3-1 install ok installed python3.13-minimal python3.13-minimal 3.13.3-1 install ok installed readline-common readline-common 8.2-6 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sgml-base sgml-base 1.31 install ok installed smrtanalysis-dev smrtanalysis-dev 0~20210112 install ok installed sqv sqv 1.3.0-1 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-1 install ok installed ucf ucf 3.0051 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.41-3 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+24 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+7 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1+b1 0m45.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m45.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblasr-dev:amd64', 'libblasr5.3.5:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls-dev:amd64', 'libcurl4t64:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhts-dev:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblzma-dev:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls-dev:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpbbam-dev:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper-dev:amd64', 'libpbcopper2.3.0:amd64', 'libpbdata-dev:amd64', 'libpbihdf-dev:amd64', 'libpbseq-dev:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtiff6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pbcommand', 'python3-pbconsensuscore', 'python3-pbcore', 'python3-pil:amd64', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'smrtanalysis-dev'] 1m4.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates comerr-dev fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 hdf5-helpers krb5-multidev libaec-dev libaec0 libatomic1 libblas3 libblasr-dev libblasr5.3.5 libbrotli-dev libbrotli1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdeflate-dev libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhts-dev libhts3t64 libhtscodecs2 libidn2-0 libidn2-dev libimagequant0 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblzma-dev libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpbbam-dev libpbbam2.4.0 libpbcopper-dev libpbcopper2.3.0 libpbdata-dev libpbihdf-dev libpbseq-dev libpixman-1-0 libpkgconf3 libpng16-16t64 libpsl-dev libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libssh2-1-dev libssh2-1t64 libssl-dev libsz2 libtasn1-6 libtasn1-6-dev libtiff6 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 libzstd-dev linux-libc-dev media-types netbase nettle-dev openssl pkgconf pkgconf-bin python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-freetype python3-idna python3-iso8601 python3-minimal python3-numpy python3-numpy-dev python3-pbcommand python3-pbconsensuscore python3-pbcore python3-pil python3-pysam python3-pytz python3-reportlab python3-requests python3-rlpycairo python3-tz python3-urllib3 python3.13 python3.13-minimal readline-common rpcsvc-proto sgml-base smrtanalysis-dev w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 0 upgraded, 0 newly installed, 176 to remove and 0 not upgraded. After this operation, 331 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18336 files and directories currently installed.) Removing smrtanalysis-dev (0~20210112) ... Removing python3-pbcommand (2.1.1+git20231020.28d1635-1) ... Removing python3-requests (2.32.3+dfsg-5) ... Removing python3-certifi (2025.1.31+ds-1) ... Removing ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpbseq-dev:amd64 (5.3.5+dfsg-9+b2) ... Removing libblasr-dev:amd64 (5.3.5+dfsg-9+b2) ... Removing libpbbam-dev:amd64 (2.4.0+dfsg-1+b4) ... Removing libhts-dev:amd64 (1.21+ds-1) ... Removing libpbihdf-dev:amd64 (5.3.5+dfsg-9+b2) ... Removing libhdf5-dev (1.14.5+repack-3) ... Removing libcurl4-gnutls-dev:amd64 (8.13.0-1) ... Removing libkrb5-dev:amd64 (1.21.3-5) ... Removing krb5-multidev:amd64 (1.21.3-5) ... Removing comerr-dev:amd64 (2.1-1.47.2-1+b1) ... Removing python3-pbcore (2.1.2+dfsg-11) ... Removing python3-biopython (1.85+dfsg-2+b1) ... Removing python3-reportlab (4.3.1-1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.27.0-2) ... Removing libcairo2:amd64 (1.18.4-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-2.3) ... Removing fontconfig-config (2.15.0-2.3) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-urw-base35 (20200910-8) ... Removing hdf5-helpers (1.14.5+repack-3) ... Removing libaec-dev:amd64 (1.1.3-1+b1) ... Removing libblasr5.3.5:amd64 (5.3.5+dfsg-9+b2) ... Removing libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... Removing python3-pil:amd64 (11.1.0-5+b1) ... Removing libraqm0:amd64 (0.10.2-1) ... Removing libharfbuzz0b:amd64 (10.2.0-1+b1) ... Removing libglib2.0-0t64:amd64 (2.84.1-1) ... Removing libatomic1:amd64 (14.2.0-19) ... Removing python3-pbconsensuscore (1.1.1+dfsg-7.1+b1) ... Removing python3-numpy (1:2.2.4+ds-1) ... Removing liblapack3:amd64 (3.12.1-2) ... Removing libblas3:amd64 (3.12.1-2) ... Removing libbrotli-dev:amd64 (1.1.0-2+b7) ... Removing xfonts-utils (1:7.7+7) ... Removing python3-freetype (2.5.1-1) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbz2-dev:amd64 (1.0.8-6) ... Removing librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libssh2-1-dev:amd64 (1.11.1-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Removing libjpeg-dev:amd64 (1:2.1.5-3.1) ... Removing libjpeg62-turbo-dev:amd64 (1:2.1.5-3.1) ... Removing libgnutls28-dev:amd64 (3.8.9-2) ... Removing libc6-dev:amd64 (2.41-6) ... Removing libc-dev-bin (2.41-6) ... Removing libkadm5srv-mit12:amd64 (1.21.3-5) ... Removing libkdb5-10t64:amd64 (1.21.3-5) ... Removing libkadm5clnt-mit12:amd64 (1.21.3-5) ... Removing libgssrpc4t64:amd64 (1.21.3-5) ... Removing libcrypt-dev:amd64 (1:4.4.38-1) ... Removing python3-pysam (0.23.0+ds-1+b1) ... Removing libpbbam2.4.0:amd64 (2.4.0+dfsg-1+b4) ... Removing libhts3t64:amd64 (1.21+ds-1) ... Removing libcurl3t64-gnutls:amd64 (8.13.0-1) ... Removing libdeflate-dev:amd64 (1.23-1+b1) ... Removing libtiff6:amd64 (4.7.0-3) ... Removing libdeflate0:amd64 (1.23-1+b1) ... Removing libgnutls-dane0t64:amd64 (3.8.9-2) ... Removing libunbound8:amd64 (1.22.0-1+b1) ... Removing libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Removing python3-charset-normalizer (3.4.1-1+b1) ... Removing python3-urllib3 (2.3.0-2) ... Removing python3-avro (1.12.0+dfsg-1) ... Removing python3-tz (2025.2-1) ... Removing python3-pytz (2025.2-1) ... Removing libp11-kit-dev:amd64 (0.25.5-3) ... Removing libfontenc1:amd64 (1:1.1.8-1+b2) ... Removing libfribidi0:amd64 (1.0.16-1) ... Removing libhdf5-fortran-310:amd64 (1.14.5+repack-3) ... Removing libgfortran5:amd64 (14.2.0-19) ... Removing nettle-dev:amd64 (3.10.1-1) ... Removing libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Removing libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Removing libgnutls-openssl27t64:amd64 (3.8.9-2) ... Removing libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Removing libimagequant0:amd64 (2.18.0-1+b2) ... Removing libgomp1:amd64 (14.2.0-19) ... Removing libgraphite2-3:amd64 (1.3.14-2+b1) ... Removing libhdf5-cpp-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... Removing libhtscodecs2:amd64 (1.6.1-2) ... Removing libidn2-dev:amd64 (2.3.8-2) ... Removing libpsl-dev:amd64 (0.21.2-1.1+b1) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3.1) ... Removing liblcms2-2:amd64 (2.16-2) ... Removing libldap-dev:amd64 (2.6.9+dfsg-2) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing liblzma-dev:amd64 (5.8.1-1) ... Removing libnghttp2-dev:amd64 (1.64.0-1) ... Removing libnghttp3-dev:amd64 (1.8.0-1) ... Removing libngtcp2-dev:amd64 (1.11.0-1) ... Removing libngtcp2-16:amd64 (1.11.0-1) ... Removing libopenjp2-7:amd64 (2.5.3-2) ... Removing libpbdata-dev:amd64 (5.3.5+dfsg-9+b2) ... Removing libpbcopper-dev:amd64 (2.3.0+dfsg-2+b2) ... Removing libpbcopper2.3.0:amd64 (2.3.0+dfsg-2+b2) ... Removing libpixman-1-0:amd64 (0.44.0-3) ... Removing pkgconf:amd64 (1.8.1-4) ... Removing pkgconf-bin (1.8.1-4) ... Removing libpkgconf3:amd64 (1.8.1-4) ... Removing libpng16-16t64:amd64 (1.6.47-1.1) ... Removing libwebpmux3:amd64 (1.5.0-0.1) ... Removing libwebpdemux2:amd64 (1.5.0-0.1) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libssl-dev:amd64 (3.5.0-1) ... Removing libtasn1-6-dev:amd64 (4.20.0-2) ... Removing libxrender1:amd64 (1:0.9.12-1) ... Removing libxext6:amd64 (2:1.3.4-1+b3) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb-shm0:amd64 (1.17.0-2+b1) ... Removing libxcb-render0:amd64 (1.17.0-2+b1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing libzstd-dev:amd64 (1.5.7+dfsg-1) ... Removing linux-libc-dev (6.12.21-1) ... Removing openssl (3.5.0-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-idna (3.10-1) ... Removing python3-iso8601 (2.1.0-2) ... Removing python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Removing libhdf5-310:amd64 (1.14.5+repack-3) ... Removing libsz2:amd64 (1.1.3-1+b1) ... Removing libaec0:amd64 (1.1.3-1+b1) ... Removing libcurl4t64:amd64 (8.13.0-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing python3 (3.13.2-2) ... Removing python3.13 (3.13.3-1) ... Removing python3-minimal (3.13.2-2) ... Removing python3.13-minimal (3.13.3-1) ... Removing libexpat1:amd64 (2.7.1-1) ... Removing libpython3-stdlib:amd64 (3.13.2-2) ... Removing libpython3.13-stdlib:amd64 (3.13.3-1) ... find: '/usr/lib/python3': No such file or directory Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Removing libgnutls30t64:amd64 (3.8.9-2) ... Removing libpsl5t64:amd64 (0.21.2-1.1+b1) ... Removing libidn2-0:amd64 (2.3.8-2) ... Removing libldap2:amd64 (2.6.9+dfsg-2) ... Removing libnghttp2-14:amd64 (1.64.0-1) ... Removing libnghttp3-9:amd64 (1.8.0-1) ... Removing libpython3.13-minimal:amd64 (3.13.3-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-6) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libssh2-1t64:amd64 (1.11.1-1) ... Removing libtasn1-6:amd64 (4.20.0-2) ... Removing libunistring5:amd64 (1.3-2) ... Removing media-types (13.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.2-6) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-1+b1) ... Removing libp11-kit0:amd64 (0.25.5-3) ... Removing libffi8:amd64 (3.4.7-1) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-5) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Processing triggers for libc-bin (2.41-6) ... 1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblasr-dev:amd64', 'libblasr5.3.5:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls-dev:amd64', 'libcurl4t64:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhts-dev:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblzma-dev:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls-dev:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpbbam-dev:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper-dev:amd64', 'libpbcopper2.3.0:amd64', 'libpbdata-dev:amd64', 'libpbihdf-dev:amd64', 'libpbseq-dev:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtiff6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pbcommand', 'python3-pbconsensuscore', 'python3-pbcore', 'python3-pil:amd64', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64', 'smrtanalysis-dev'] 1m4.1s INFO: Running scripts post_remove 1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_remove_cleanup'] 1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_remove_cleanup'] 1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_remove_exceptions'] 1m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_remove_exceptions'] 1m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblasr-dev:amd64', 'libblasr5.3.5:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls-dev:amd64', 'libcurl4t64:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhts-dev:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblzma-dev:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls-dev:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpbbam-dev:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper-dev:amd64', 'libpbcopper2.3.0:amd64', 'libpbdata-dev:amd64', 'libpbihdf-dev:amd64', 'libpbseq-dev:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtiff6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pbcommand', 'python3-pbconsensuscore', 'python3-pbcore', 'python3-pil:amd64', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 1m4.4s DUMP: (Reading database ... 5533 files and directories currently installed.) Purging configuration files for ca-certificates (20241223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for comerr-dev:amd64 (2.1-1.47.2-1+b1) ... Purging configuration files for fontconfig-config (2.15.0-2.3) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove hdf5-helpers which isn't installed dpkg: warning: ignoring request to remove krb5-multidev which isn't installed dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblasr-dev which isn't installed dpkg: warning: ignoring request to remove libblasr5.3.5 which isn't installed dpkg: warning: ignoring request to remove libbrotli-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.38-1) ... dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4-gnutls-dev which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdeflate-dev which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libevent-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libffi8 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.84.1-1) ... dpkg: warning: ignoring request to remove libgmp-dev which isn't installed dpkg: warning: ignoring request to remove libgmpxx4ldbl which isn't installed dpkg: warning: ignoring request to remove libgnutls-dane0t64 which isn't installed dpkg: warning: ignoring request to remove libgnutls-openssl27t64 which isn't installed dpkg: warning: ignoring request to remove libgnutls28-dev which isn't installed dpkg: warning: ignoring request to remove libgnutls30t64 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libgssrpc4t64 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-dev which isn't installed dpkg: warning: ignoring request to remove libhdf5-fortran-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-cpp-310 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-fortran-310 which isn't installed dpkg: warning: ignoring request to remove libhts-dev which isn't installed dpkg: warning: ignoring request to remove libhts3t64 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libidn2-0 which isn't installed dpkg: warning: ignoring request to remove libidn2-dev which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg-dev which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkadm5clnt-mit12 which isn't installed dpkg: warning: ignoring request to remove libkadm5srv-mit12 which isn't installed dpkg: warning: ignoring request to remove libkdb5-10t64 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5-dev which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-dev which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblzma-dev which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-dev which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-dev which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls-dev which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-dev which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libp11-kit-dev which isn't installed dpkg: warning: ignoring request to remove libp11-kit0 which isn't installed dpkg: warning: ignoring request to remove libpbbam-dev which isn't installed dpkg: warning: ignoring request to remove libpbbam2.4.0 which isn't installed dpkg: warning: ignoring request to remove libpbcopper-dev which isn't installed dpkg: warning: ignoring request to remove libpbcopper2.3.0 which isn't installed dpkg: warning: ignoring request to remove libpbdata-dev which isn't installed dpkg: warning: ignoring request to remove libpbihdf-dev which isn't installed dpkg: warning: ignoring request to remove libpbseq-dev which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpkgconf3 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl-dev which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.3-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-6) ... dpkg: warning: ignoring request to remove librtmp-dev which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1-dev which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libssl-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6 which isn't installed dpkg: warning: ignoring request to remove libtasn1-6-dev which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libunbound8 which isn't installed dpkg: warning: ignoring request to remove libunistring5 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libzstd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (13.0.0) ... Purging configuration files for netbase (6.5) ... dpkg: warning: ignoring request to remove nettle-dev which isn't installed Purging configuration files for openssl (3.5.0-1) ... Purging configuration files for pkgconf:amd64 (1.8.1-4) ... dpkg: warning: ignoring request to remove pkgconf-bin which isn't installed Purging configuration files for python3 (3.13.2-2) ... dpkg: warning: ignoring request to remove python3-avro which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-iso8601 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed Purging configuration files for python3-numpy (1:2.2.4+ds-1) ... dpkg: warning: ignoring request to remove python3-numpy-dev which isn't installed dpkg: warning: ignoring request to remove python3-pbcommand which isn't installed dpkg: warning: ignoring request to remove python3-pbconsensuscore which isn't installed dpkg: warning: ignoring request to remove python3-pbcore which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytz which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.13 which isn't installed Purging configuration files for python3.13-minimal (3.13.3-1) ... Purging configuration files for readline-common (8.2-6) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+24) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+7) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', 'ca-certificates', 'comerr-dev:amd64', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libblasr-dev:amd64', 'libblasr5.3.5:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls-dev:amd64', 'libcurl4t64:amd64', 'libdeflate-dev:amd64', 'libdeflate0:amd64', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls-openssl27t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhts-dev:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblzma-dev:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls-dev:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpbbam-dev:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper-dev:amd64', 'libpbcopper2.3.0:amd64', 'libpbdata-dev:amd64', 'libpbihdf-dev:amd64', 'libpbseq-dev:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpng16-16t64:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtiff6:amd64', 'libunbound8:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'nettle-dev:amd64', 'openssl', 'pkgconf:amd64', 'pkgconf-bin', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-pbcommand', 'python3-pbconsensuscore', 'python3-pbcore', 'python3-pil:amd64', 'python3-pysam', 'python3-pytz', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-tz', 'python3-urllib3', 'python3.13', 'python3.13-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zlib1g-dev:amd64'] 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', 'smrtanalysis-dev'] 1m4.4s DUMP: dpkg: warning: ignoring request to remove smrtanalysis-dev which isn't installed 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', 'smrtanalysis-dev'] 1m4.4s INFO: Running scripts post_purge 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_purge_exceptions'] 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_purge_exceptions'] 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_purge_manual_cleanup'] 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_purge_manual_cleanup'] 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', '--pending'] 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--purge', '--pending'] 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--remove', '--pending'] 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg', '--remove', '--pending'] 1m4.4s INFO: Running scripts post_test 1m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_test_exceptions'] 1m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'tmp/scripts/post_test_exceptions'] 1m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 1m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 1m4.9s DEBUG: No broken symlinks as far as we can find. 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-divert', '--list'] 1m4.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'dpkg-divert', '--list'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'clean'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53', 'apt-get', 'clean'] 1m4.9s DEBUG: Recording chroot state 1m5.6s INFO: PASS: Installation and purging test. 1m5.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/shm'] 1m5.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/shm'] 1m5.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/console'] 1m5.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/console'] 1m5.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/ptmx'] 1m5.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/ptmx'] 1m5.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/pts'] 1m5.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/dev/pts'] 1m5.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/proc'] 1m5.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53/proc'] 1m5.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 1m6.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3ekjfj53'] 1m6.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp3ekjfj53 1m6.0s INFO: PASS: All tests. 1m6.0s INFO: piuparts run ends. ret=0 End: 2025-04-09 10:53:23 GMT