Start: 2025-02-17 04:40:04 GMT Package: kleborate Version: 2.4.1-4 Installed-Size: 62182 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-biopython, python3:any, ncbi-blast+, mash, python3-pkg-resources, kaptive, kaptive-data Description: tool to screen Klebsiella genome assemblies Homepage: https://github.com/katholt/Kleborate Description-md5: 16d6807c15c5f96cdee834a3a29ebbb5 Section: science Priority: optional Filename: pool/main/k/kleborate/kleborate_2.4.1-4_amd64.deb Size: 7742464 MD5sum: 9e40824f322586c3f6610d63e0c4f50e SHA256: 08cb62ac8a248c181f261104e54539082808cf865475fd9fe210193137082793 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt kleborate=2.4.1-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt kleborate=2.4.1-4 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzsko97j6 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzsko97j6 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/5', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpzsko97j6/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzsko97j6/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', 'update'] 0m3.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [205 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7371 kB] Fetched 17.7 MB in 2s (9288 kB/s) Reading package lists... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following NEW packages will be installed: libapt-pkg7.0 The following packages will be upgraded: apt login.defs passwd perl-base 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 5631 kB of archives. After this operation, 3842 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.40.1-2 [1665 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 2.9.30 [1104 kB] Get:3 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.30 [1440 kB] Get:4 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.17.2-3 [185 kB] Get:5 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.17.2-3 [1237 kB] Fetched 5631 kB in 0s (80.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../perl-base_5.40.1-2_amd64.deb ... Unpacking perl-base (5.40.1-2) over (5.40.0-8) ... Setting up perl-base (5.40.1-2) ... Selecting previously unselected package libapt-pkg7.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5023 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_2.9.30_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (2.9.30) ... Setting up libapt-pkg7.0:amd64 (2.9.30) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.30_amd64.deb ... Unpacking apt (2.9.30) over (2.9.29) ... Setting up apt (2.9.30) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5072 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.17.2-3_all.deb ... Unpacking login.defs (1:4.17.2-3) over (1:4.17.2-2) ... Preparing to unpack .../passwd_1%3a4.17.2-3_amd64.deb ... Unpacking passwd (1:4.17.2-3) over (1:4.17.2-2) ... Setting up login.defs (1:4.17.2-3) ... Setting up passwd (1:4.17.2-3) ... Processing triggers for libc-bin (2.40-7) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.9s DUMP: 57648923a791114554ddb300efc135c2 - 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.9s INFO: Running scripts post_setup 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_minimize'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_minimize'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', 'clean'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', 'clean'] 0m7.9s DEBUG: Recording chroot state 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.4s DUMP: install ok installed apt apt 2.9.30 install ok installed base-files base-files 13.6 install ok installed base-passwd base-passwd 3.6.6 install ok installed bash bash 5.2.37-1 install ok installed bsdutils bsdutils 1:2.40.4-3 install ok installed coreutils coreutils 9.5-1+b1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.89 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.21 install ok installed diffutils diffutils 1:3.10-2 install ok installed dpkg dpkg 1.22.15 install ok installed e2fsprogs e2fsprogs 1.47.2-1 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-17 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.29 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 2.9.30 install ok installed libattr1:amd64 libattr1 1:2.5.2-2 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b1 install ok installed libblkid1:amd64 libblkid1 2.40.4-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.40-7 install ok installed libc6:amd64 libc6 2.40-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4 install ok installed libcap2:amd64 libcap2 1:2.66-5+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.277 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.2-1 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-17 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-3 install ok installed liblzma5:amd64 liblzma5 5.6.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.40.4-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-3 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-3 install ok installed libpam-runtime libpam-runtime 1.7.0-3 install ok installed libpam0g:amd64 libpam0g 1.7.0-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-2 install ok installed libselinux1:amd64 libselinux1 3.8-3 install ok installed libsemanage-common libsemanage-common 3.8-1 install ok installed libsemanage2:amd64 libsemanage2 3.8-1 install ok installed libsepol2:amd64 libsepol2 3.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.4-3 install ok installed libss2:amd64 libss2 1.47.2-1 install ok installed libssl3t64:amd64 libssl3t64 3.4.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-17 install ok installed libsystemd0:amd64 libsystemd0 257.3-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250125-2 install ok installed libudev1:amd64 libudev1 257.3-1 install ok installed libuuid1:amd64 libuuid1 2.40.4-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-2 install ok installed login login 1:4.16.0-2+really2.40.4-3 install ok installed login.defs login.defs 1:4.17.2-3 install ok installed logsave logsave 1.47.2-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.40.4-3 install ok installed ncurses-base ncurses-base 6.5+20250125-2 install ok installed ncurses-bin ncurses-bin 6.5+20250125-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.4.1-1 install ok installed passwd passwd 1:4.17.2-3 install ok installed perl-base perl-base 5.40.1-2 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.2.1-6+b1 install ok installed sysvinit-utils sysvinit-utils 3.14-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025a-2 install ok installed usr-is-merged usr-is-merged 39+nmu2 install ok installed util-linux util-linux 2.40.4-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'dpkg-divert', '--list'] 0m8.4s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'dpkg-divert', '--list'] 0m8.4s INFO: Running scripts is_testable 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s INFO: apt-cache does not know about any of the requested packages 0m8.4s INFO: Running scripts pre_test 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_test_root_password'] 0m8.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_test_root_password'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 0m8.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 0m9.3s DEBUG: No broken symlinks as far as we can find. 0m9.3s INFO: Running scripts pre_install 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_database-server'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_database-server'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_extras'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_extras'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_log_alternatives'] 0m9.3s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/pre_install_log_alternatives'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 0m10.3s DEBUG: No broken symlinks as far as we can find. 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-cache', 'policy'] 0m11.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-cache', 'policy'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-cache', 'policy', 'kleborate'] 0m11.1s DUMP: kleborate: Installed: (none) Candidate: 2.4.1-4 Version table: 2.4.1-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-cache', 'policy', 'kleborate'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', '-y', 'install', 'kleborate=2.4.1-4'] 1m6.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 kaptive kaptive-data libatomic1 libblas3 libbrotli1 libcairo2 libcapnp-1.1.0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblerc4 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmurmurhash2 libncursesw6 libnghttp2-14 libopenjp2-7 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 libreadline8t64 libsharpyuv0 libsqlite3-0 libtiff6 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 mash media-types ncbi-blast+ ncbi-data netbase perl perl-modules-5.40 python3 python3-autocommand python3-biopython python3-cairo python3-chardet python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-numpy python3-numpy-dev python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-typeguard python3-typing-extensions python3.13 python3.13-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre kaptive-example gdbm-l10n low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html liblcms2-utils sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy python3-igraph raxml samtools t-coffee wise gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 python-biopython-doc python3-olefile fonts-dejavu-extra ca-certificates The following NEW packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 kaptive kaptive-data kleborate libatomic1 libblas3 libbrotli1 libcairo2 libcapnp-1.1.0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblcms2-2 liblerc4 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmurmurhash2 libncursesw6 libnghttp2-14 libopenjp2-7 libperl5.40 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libraqm0 libreadline8t64 libsharpyuv0 libsqlite3-0 libtiff6 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 mash media-types ncbi-blast+ ncbi-data netbase perl perl-modules-5.40 python3 python3-autocommand python3-biopython python3-cairo python3-chardet python3-freetype python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-numpy python3-numpy-dev python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-typeguard python3-typing-extensions python3.13 python3.13-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 84.9 MB of archives. After this operation, 398 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 11.0.0 [27.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5+20250125-2 [135 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:17 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-2 [4315 kB] Get:21 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-2 [267 kB] Get:22 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:23 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.46-4 [284 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:28 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+24 [217 kB] Get:29 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:30 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:31 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:32 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2 [317 kB] Get:33 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.2.2+ds-2 [138 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-17 [836 kB] Get:36 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.2.2+ds-2 [7507 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-17 [137 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get:42 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.3-1 [204 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-17 [9316 B] Get:46 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.83.3-2 [1511 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 10.2.0-1 [479 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:52 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 11.1.0-5 [531 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2 [391 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b4 [27.8 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:74 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.3.0-1 [1157 kB] Get:75 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:76 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.85+dfsg-2 [1674 kB] Get:78 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get:79 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:85 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.16.0+ds-6+b1 [15.2 MB] Get:86 http://deb.debian.org/debian sid/main amd64 kaptive all 2.0.8-1 [24.2 kB] Get:87 http://deb.debian.org/debian sid/main amd64 kaptive-data all 2.0.8-1 [2686 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libcapnp-1.1.0 amd64 1.1.0-2 [1479 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libmurmurhash2 amd64 1.6-1+b1 [6180 B] Get:92 http://deb.debian.org/debian sid/main amd64 mash amd64 2.3+dfsg-6+b2 [192 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:99 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get:101 http://deb.debian.org/debian sid/main amd64 kleborate amd64 2.4.1-4 [7742 kB] Preconfiguring packages ... Fetched 84.9 MB in 0s (221 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5077 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... 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Setting up libmurmurhash2:amd64 (1.6-1+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libgomp1:amd64 (14.2.0-17) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.46-4) ... Setting up python3-numpy-dev:amd64 (1:2.2.2+ds-2) ... Setting up libatomic1:amd64 (14.2.0-17) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up kaptive-data (2.0.8-1) ... Setting up libncursesw6:amd64 (6.5+20250125-2) ... Setting up libgfortran5:amd64 (14.2.0-17) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up perl-modules-5.40 (5.40.1-2) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libopenjp2-7:amd64 (2.5.3-1) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libcapnp-1.1.0:amd64 (1.1.0-2) ... Setting up libmbedcrypto16:amd64 (3.6.2-3) ... Setting up libgsl28:amd64 (2.8+dfsg-5) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1.1+b4) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libperl5.40:amd64 (5.40.1-2) ... Setting up perl (5.40.1-2) ... Setting up libglib2.0-0t64:amd64 (2.83.3-2) ... No schema files found: doing nothing. Setting up libmbedx509-7:amd64 (3.6.2-3) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up mash (2.3+dfsg-6+b2) ... Setting up libmbedtls21:amd64 (3.6.2-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.2.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3.13 (3.13.2-1) ... Setting up python3 (3.13.1-2) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libcairo2:amd64 (1.18.2-2) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.2+ds-2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (11.1.0-5) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-reportlab (4.3.0-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-2) ... Setting up kaptive (2.0.8-1) ... Setting up kleborate (2.4.1-4) ... 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'apt-get', '-y', 'install', 'kleborate=2.4.1-4'] 1m6.1s INFO: Running scripts post_install 1m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_install_exceptions'] 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_install_exceptions'] 1m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_install_log_alternatives'] 1m6.1s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=kleborate=2.4.1-4: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=kleborate=2.4.1-4: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=kleborate=2.4.1-4: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=kleborate=2.4.1-4: /usr/bin/update-alternatives --remove rename /usr/bin/prename 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', 'tmp/scripts/post_install_log_alternatives'] 1m6.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 1m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 1m8.5s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-ExtraLight.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-ExtraLight.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuMathTeXGyre.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuMathTeXGyre.ttf (python3-reportlab) 1m9.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', '-ac', '--ignore-obsolete'] 1m11.2s DUMP: /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.njs /srv/piuparts.debian.org/tmp/tmpzsko97j6/usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.njs 1m11.2s DEBUG: Command failed (status=2), but ignoring error: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzsko97j6', '-ac', '--ignore-obsolete'] 1m11.2s ERROR: FAIL: debsums reports modifications inside the chroot: /usr/lib/python3/dist-packages/kleborate/data/CARD_v3.1.13.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/MgrB_and_PmrB.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/OmpK.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/QRDR_120.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/clb_alleles.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/iro_alleles.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/iuc_alleles.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/rmpA2.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/rmp_alleles.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/wzi.fasta.njs /usr/lib/python3/dist-packages/kleborate/data/ybt_alleles.fasta.njs 1m11.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/shm'] 1m11.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/shm'] 1m11.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/console'] 1m11.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/console'] 1m11.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/ptmx'] 1m11.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/ptmx'] 1m11.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/pts'] 1m11.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/dev/pts'] 1m11.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/proc'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpzsko97j6/proc'] 1m11.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 1m12.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzsko97j6'] 1m12.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzsko97j6 1m12.1s ERROR: piuparts run ends. ret=1 End: 2025-02-17 04:41:16 GMT