Start: 2019-07-05 12:31:18 UTC Package: ants Source: ants (2.1.0-5) Version: 2.1.0-5+b1 Installed-Size: 166349 Maintainer: NeuroDebian Team Architecture: amd64 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.0), libinsighttoolkit4.12 (>= 4.12.0-dfsg1-2~), libstdc++6 (>= 5.2) Recommends: environment-modules Suggests: fsl, gridengine-client, r-base-core Conflicts: gpe-conf Description: advanced normalization tools for brain and image analysis Homepage: http://www.picsl.upenn.edu/ANTS/ Description-md5: e136f6575904d6b430ced4764eb6c08c Tag: field::medicine:imaging, implemented-in::c++, interface::commandline, role::program, science::calculation, scope::application, works-with-format::TODO, works-with::file, works-with::image, works-with::image:raster Section: science Priority: optional Filename: pool/main/a/ants/ants_2.1.0-5+b1_amd64.deb Size: 23674942 MD5sum: ae12a06eca4dd8f67856e5234787ec2f SHA256: 4f299618eb05b1ae9d10643a535016672534d90d2eb5e0b22d29e3873306dcdb Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt ants=2.1.0-5+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.0.1~201906172054~1.0.0-58-g7dbcf873 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt ants=2.1.0-5+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u3 (2019-06-16) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpIpLCjj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpIpLCjj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m3.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m3.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/proc'] 0m3.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/proc'] 0m3.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/pts'] 0m3.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/pts'] 0m3.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/ptmx'] 0m3.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/ptmx'] 0m3.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/console'] 0m3.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/console'] 0m3.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/shm'] 0m3.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/shm'] 0m3.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m3.4s DEBUG: Created policy-rc.d and chmodded it. 0m3.4s DEBUG: Created resolv.conf. 0m3.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpIpLCjj/tmp/scripts/ 0m3.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpIpLCjj/tmp/scripts/ 0m3.5s INFO: Running scripts post_chroot_unpack 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'update'] 0m5.0s DUMP: Hit:1 http://mirror-ubc.debian.org/debian sid InRelease Reading package lists... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'update'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s DUMP: 7c447f0ea535759574f407677df5bce4 - 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.0s INFO: Running scripts post_setup 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'clean'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'clean'] 0m7.2s DEBUG: Recording chroot state 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2 install ok installed base-files base-files 10.3 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.72 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.2-1 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-7 install ok installed gpgv gpgv 2.2.13-2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.1 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.45.2-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.45.2-1 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.45.2-1 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-7 install ok installed libsystemd0:amd64 libsystemd0 241-5 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2 install ok installed libudev1:amd64 libudev1 241-5 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-divert', '--list'] 0m8.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-divert', '--list'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: apt-cache does not know about any of the requested packages 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_test_root_password'] 0m8.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_test_root_password'] 0m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m8.9s DEBUG: No broken symlinks as far as we can find. 0m8.9s INFO: Running scripts pre_install 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_log_alternatives'] 0m9.0s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_install_log_alternatives'] 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m10.0s DEBUG: No broken symlinks as far as we can find. 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-cache', 'policy'] 0m11.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-cache', 'policy'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-cache', 'policy', 'ants'] 0m11.3s DUMP: ants: Installed: (none) Candidate: 2.1.0-5+b1 Version table: 2.1.0-5+b1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-cache', 'policy', 'ants'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', '-y', 'install', 'ants=2.1.0-5+b1'] 0m19.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec0 libcharls2 libdouble-conversion1 libexpat1 libfftw3-double3 libfftw3-single3 libgdcm2.8 libgfortran5 libgomp1 libhdf5-103 libhdf5-cpp-103 libinsighttoolkit4.12 libjbig0 libjpeg62-turbo libjson-c3 libnifti2 libopenjp2-7 libpng16-16 libquadmath0 libsocket++1 libssl1.1 libsz2 libtiff5 libwebp6 Suggested packages: fsl gridengine-client r-base-core libfftw3-bin libfftw3-dev Recommended packages: environment-modules The following NEW packages will be installed: ants libaec0 libcharls2 libdouble-conversion1 libexpat1 libfftw3-double3 libfftw3-single3 libgdcm2.8 libgfortran5 libgomp1 libhdf5-103 libhdf5-cpp-103 libinsighttoolkit4.12 libjbig0 libjpeg62-turbo libjson-c3 libnifti2 libopenjp2-7 libpng16-16 libquadmath0 libsocket++1 libssl1.1 libsz2 libtiff5 libwebp6 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. Need to get 36.8 MB of archives. After this operation, 225 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 libdouble-conversion1 amd64 3.1.0-3 [39.4 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 libexpat1 amd64 2.2.6-2 [106 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libgomp1 amd64 8.3.0-7 [75.8 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 libcharls2 amd64 2.0.0+dfsg-1 [64.3 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 libjson-c3 amd64 0.12.1+ds-2 [26.9 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.3.0-2 [158 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 libsocket++1 amd64 1.12.13-10 [42.1 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 libgdcm2.8 amd64 2.8.8-9 [1834 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 libquadmath0 amd64 8.3.0-7 [133 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 libgfortran5 amd64 8.3.0-7 [581 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:15 http://mirror-ubc.debian.org/debian sid/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:16 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:17 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-cpp-103 amd64 1.10.4+repack-10 [146 kB] Get:18 http://mirror-ubc.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:19 http://mirror-ubc.debian.org/debian sid/main amd64 libnifti2 amd64 2.0.0-3 [105 kB] Get:20 http://mirror-ubc.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.37-1 [292 kB] Get:21 http://mirror-ubc.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:22 http://mirror-ubc.debian.org/debian sid/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:23 http://mirror-ubc.debian.org/debian sid/main amd64 libtiff5 amd64 4.0.10-4 [257 kB] Get:24 http://mirror-ubc.debian.org/debian sid/main amd64 libinsighttoolkit4.12 amd64 4.12.2-dfsg1-4+b1 [4425 kB] Get:25 http://mirror-ubc.debian.org/debian sid/main amd64 ants amd64 2.1.0-5+b1 [23.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.8 MB in 1s (49.0 MB/s) Selecting previously unselected package libdouble-conversion1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4577 files and directories currently installed.) Preparing to unpack .../00-libdouble-conversion1_3.1.0-3_amd64.deb ... Unpacking libdouble-conversion1:amd64 (3.1.0-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../01-libexpat1_2.2.6-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../02-libgomp1_8.3.0-7_amd64.deb ... Unpacking libgomp1:amd64 (8.3.0-7) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../03-libfftw3-double3_3.3.8-2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.8-2) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../04-libfftw3-single3_3.3.8-2_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.8-2) ... Selecting previously unselected package libcharls2:amd64. Preparing to unpack .../05-libcharls2_2.0.0+dfsg-1_amd64.deb ... Unpacking libcharls2:amd64 (2.0.0+dfsg-1) ... Selecting previously unselected package libjson-c3:amd64. Preparing to unpack .../06-libjson-c3_0.12.1+ds-2_amd64.deb ... Unpacking libjson-c3:amd64 (0.12.1+ds-2) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../07-libopenjp2-7_2.3.0-2_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.3.0-2) ... Selecting previously unselected package libsocket++1:amd64. Preparing to unpack .../08-libsocket++1_1.12.13-10_amd64.deb ... Unpacking libsocket++1:amd64 (1.12.13-10) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../09-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package libgdcm2.8:amd64. Preparing to unpack .../10-libgdcm2.8_2.8.8-9_amd64.deb ... Unpacking libgdcm2.8:amd64 (2.8.8-9) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../11-libquadmath0_8.3.0-7_amd64.deb ... Unpacking libquadmath0:amd64 (8.3.0-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../12-libgfortran5_8.3.0-7_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-7) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../13-libaec0_1.0.2-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.2-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../14-libsz2_1.0.2-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.2-1) ... Selecting previously unselected package libhdf5-103:amd64. Preparing to unpack .../15-libhdf5-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-10) ... Selecting previously unselected package libhdf5-cpp-103:amd64. Preparing to unpack .../16-libhdf5-cpp-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-10) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../17-libjpeg62-turbo_1%3a1.5.2-2+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Selecting previously unselected package libnifti2. Preparing to unpack .../18-libnifti2_2.0.0-3_amd64.deb ... Unpacking libnifti2 (2.0.0-3) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../19-libpng16-16_1.6.37-1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../20-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../21-libwebp6_0.6.1-2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../22-libtiff5_4.0.10-4_amd64.deb ... Unpacking libtiff5:amd64 (4.0.10-4) ... Selecting previously unselected package libinsighttoolkit4.12. Preparing to unpack .../23-libinsighttoolkit4.12_4.12.2-dfsg1-4+b1_amd64.deb ... Unpacking libinsighttoolkit4.12 (4.12.2-dfsg1-4+b1) ... Selecting previously unselected package ants. Preparing to unpack .../24-ants_2.1.0-5+b1_amd64.deb ... Unpacking ants (2.1.0-5+b1) ... Setting up libexpat1:amd64 (2.2.6-2) ... Setting up libjson-c3:amd64 (0.12.1+ds-2) ... Setting up libnifti2 (2.0.0-3) ... Setting up libcharls2:amd64 (2.0.0+dfsg-1) ... Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up libgomp1:amd64 (8.3.0-7) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libquadmath0:amd64 (8.3.0-7) ... Setting up libpng16-16:amd64 (1.6.37-1) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libsocket++1:amd64 (1.12.13-10) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libgfortran5:amd64 (8.3.0-7) ... Setting up libopenjp2-7:amd64 (2.3.0-2) ... Setting up libtiff5:amd64 (4.0.10-4) ... Setting up libdouble-conversion1:amd64 (3.1.0-3) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up libgdcm2.8:amd64 (2.8.8-9) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-10) ... Setting up libinsighttoolkit4.12 (4.12.2-dfsg1-4+b1) ... Setting up ants (2.1.0-5+b1) ... Processing triggers for libc-bin (2.28-10) ... 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', '-y', 'install', 'ants=2.1.0-5+b1'] 0m19.2s INFO: Running scripts post_install 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_install_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_install_exceptions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_install_log_alternatives'] 0m19.3s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_install_log_alternatives'] 0m19.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m19.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m20.3s DEBUG: No broken symlinks as far as we can find. 0m20.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', '-ac', '--ignore-obsolete'] 0m23.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', '-ac', '--ignore-obsolete'] 0m23.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.3s DUMP: 0.15.1 0m23.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.3s INFO: Running adequate version 0.15.1 now. 0m23.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'ants'] 0m31.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'ants'] 0m31.0s INFO: Running scripts pre_remove 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_exceptions'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/pre_remove_exceptions'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.9s DUMP: install ok installed adduser adduser 3.118 install ok installed ants ants 2.1.0-5+b1 install ok installed apt apt 1.8.2 install ok installed base-files base-files 10.3 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.72 install ok installed debian-archive-keyring debian-archive-keyring 2019.1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.7 install ok installed e2fsprogs e2fsprogs 1.45.2-1 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-7 install ok installed gpgv gpgv 2.2.13-2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.57 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.1 install ok installed libc-bin libc-bin 2.28-10 install ok installed libc6:amd64 libc6 2.28-10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcharls2:amd64 libcharls2 2.0.0+dfsg-1 install ok installed libcom-err2:amd64 libcom-err2 1.45.2-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdouble-conversion1:amd64 libdouble-conversion1 3.1.0-3 install ok installed libexpat1:amd64 libexpat1 2.2.6-2 install ok installed libext2fs2:amd64 libext2fs2 1.45.2-1 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.8-2 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.8-2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5 install ok installed libgdcm2.8:amd64 libgdcm2.8 2.8.8-9 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-7 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4 install ok installed libgomp1:amd64 libgomp1 8.3.0-7 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhdf5-cpp-103:amd64 libhdf5-cpp-103 1.10.4+repack-10 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed libinsighttoolkit4.12 libinsighttoolkit4.12 4.12.2-dfsg1-4+b1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+b1 install ok installed libjson-c3:amd64 libjson-c3 0.12.1+ds-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1 install ok installed libnifti2 libnifti2 2.0.0-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-1 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-7 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsocket++1:amd64 libsocket++1 1.12.13-10 install ok installed libss2:amd64 libss2 1.45.2-1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1c-1 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-7 install ok installed libsystemd0:amd64 libsystemd0 241-5 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtiff5:amd64 libtiff5 4.0.10-4 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2 install ok installed libudev1:amd64 libudev1 241-5 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'remove', 'libwebp6:amd64', 'libhdf5-103:amd64', 'libnifti2', 'libgfortran5:amd64', 'libtiff5:amd64', 'libjson-c3:amd64', 'libquadmath0:amd64', 'libgdcm2.8:amd64', 'libfftw3-single3:amd64', 'libcharls2:amd64', 'libpng16-16:amd64', 'libexpat1:amd64', 'libssl1.1:amd64', 'libjbig0:amd64', 'libinsighttoolkit4.12', 'libsz2:amd64', 'libfftw3-double3:amd64', 'libaec0:amd64', 'libsocket++1:amd64', 'libhdf5-cpp-103:amd64', 'libgomp1:amd64', 'libjpeg62-turbo:amd64', 'libopenjp2-7:amd64', 'libdouble-conversion1:amd64', 'ants'] 0m34.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ants libaec0 libcharls2 libdouble-conversion1 libexpat1 libfftw3-double3 libfftw3-single3 libgdcm2.8 libgfortran5 libgomp1 libhdf5-103 libhdf5-cpp-103 libinsighttoolkit4.12 libjbig0 libjpeg62-turbo libjson-c3 libnifti2 libopenjp2-7 libpng16-16 libquadmath0 libsocket++1 libssl1.1 libsz2 libtiff5 libwebp6 0 upgraded, 0 newly installed, 25 to remove and 0 not upgraded. After this operation, 225 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5306 files and directories currently installed.) Removing ants (2.1.0-5+b1) ... Removing libinsighttoolkit4.12 (4.12.2-dfsg1-4+b1) ... Removing libhdf5-cpp-103:amd64 (1.10.4+repack-10) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libgdcm2.8:amd64 (2.8.8-9) ... Removing libcharls2:amd64 (2.0.0+dfsg-1) ... Removing libdouble-conversion1:amd64 (3.1.0-3) ... Removing libexpat1:amd64 (2.2.6-2) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfftw3-single3:amd64 (3.3.8-2) ... Removing libgfortran5:amd64 (8.3.0-7) ... Removing libgomp1:amd64 (8.3.0-7) ... Removing libtiff5:amd64 (4.0.10-4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Removing libjson-c3:amd64 (0.12.1+ds-2) ... Removing libnifti2 (2.0.0-3) ... Removing libopenjp2-7:amd64 (2.3.0-2) ... Removing libpng16-16:amd64 (1.6.37-1) ... Removing libquadmath0:amd64 (8.3.0-7) ... Removing libsocket++1:amd64 (1.12.13-10) ... Removing libssl1.1:amd64 (1.1.1c-1) ... Removing libwebp6:amd64 (0.6.1-2) ... Processing triggers for libc-bin (2.28-10) ... 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'remove', 'libwebp6:amd64', 'libhdf5-103:amd64', 'libnifti2', 'libgfortran5:amd64', 'libtiff5:amd64', 'libjson-c3:amd64', 'libquadmath0:amd64', 'libgdcm2.8:amd64', 'libfftw3-single3:amd64', 'libcharls2:amd64', 'libpng16-16:amd64', 'libexpat1:amd64', 'libssl1.1:amd64', 'libjbig0:amd64', 'libinsighttoolkit4.12', 'libsz2:amd64', 'libfftw3-double3:amd64', 'libaec0:amd64', 'libsocket++1:amd64', 'libhdf5-cpp-103:amd64', 'libgomp1:amd64', 'libjpeg62-turbo:amd64', 'libopenjp2-7:amd64', 'libdouble-conversion1:amd64', 'ants'] 0m34.7s INFO: Running scripts post_remove 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_remove_exceptions'] 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_remove_exceptions'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--purge', 'libwebp6:amd64', 'libhdf5-103:amd64', 'libnifti2', 'libgfortran5:amd64', 'libtiff5:amd64', 'libjson-c3:amd64', 'libquadmath0:amd64', 'libgdcm2.8:amd64', 'libfftw3-single3:amd64', 'libcharls2:amd64', 'libpng16-16:amd64', 'libexpat1:amd64', 'libssl1.1:amd64', 'libjbig0:amd64', 'libinsighttoolkit4.12', 'libsz2:amd64', 'libfftw3-double3:amd64', 'libaec0:amd64', 'libsocket++1:amd64', 'libhdf5-cpp-103:amd64', 'libgomp1:amd64', 'libjpeg62-turbo:amd64', 'libopenjp2-7:amd64', 'libdouble-conversion1:amd64'] 0m34.8s DUMP: dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libnifti2 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libjson-c3 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libgdcm2.8 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libcharls2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed (Reading database ... 4576 files and directories currently installed.) Purging configuration files for libssl1.1:amd64 (1.1.1c-1) ... dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libinsighttoolkit4.12 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libsocket++1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-103 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion1 which isn't installed 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--purge', 'libwebp6:amd64', 'libhdf5-103:amd64', 'libnifti2', 'libgfortran5:amd64', 'libtiff5:amd64', 'libjson-c3:amd64', 'libquadmath0:amd64', 'libgdcm2.8:amd64', 'libfftw3-single3:amd64', 'libcharls2:amd64', 'libpng16-16:amd64', 'libexpat1:amd64', 'libssl1.1:amd64', 'libjbig0:amd64', 'libinsighttoolkit4.12', 'libsz2:amd64', 'libfftw3-double3:amd64', 'libaec0:amd64', 'libsocket++1:amd64', 'libhdf5-cpp-103:amd64', 'libgomp1:amd64', 'libjpeg62-turbo:amd64', 'libopenjp2-7:amd64', 'libdouble-conversion1:amd64'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--purge', 'ants'] 0m34.8s DUMP: dpkg: warning: ignoring request to remove ants which isn't installed 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--purge', 'ants'] 0m34.8s INFO: Running scripts post_purge 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_purge_exceptions'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_purge_exceptions'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--purge', '--pending'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--purge', '--pending'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--remove', '--pending'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg', '--remove', '--pending'] 0m34.9s INFO: Running scripts post_test 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_test_exceptions'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'tmp/scripts/post_test_exceptions'] 0m34.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m35.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m35.8s DEBUG: No broken symlinks as far as we can find. 0m35.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-divert', '--list'] 0m35.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m35.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'dpkg-divert', '--list'] 0m35.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'clean'] 0m35.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpIpLCjj', 'apt-get', 'clean'] 0m35.8s DEBUG: Recording chroot state 0m36.7s INFO: PASS: Installation and purging test. 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/shm'] 0m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/shm'] 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/console'] 0m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/console'] 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/ptmx'] 0m37.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/ptmx'] 0m37.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/pts'] 0m37.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/dev/pts'] 0m37.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/proc'] 0m37.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpIpLCjj/proc'] 0m37.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m37.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpIpLCjj'] 0m37.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpIpLCjj 0m37.3s INFO: PASS: All tests. 0m37.3s INFO: piuparts run ends. ret=0 End: 2019-07-05 12:31:57 UTC