Start: 2024-04-24 15:54:45 GMT Package: augur Version: 24.3.0-1 Installed-Size: 930 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description: pipeline components for real-time virus analysis Homepage: https://github.com/nextstrain/augur Description-md5: e2aaa44840d7b632d0e95700bc100196 Section: science Priority: optional Filename: pool/main/a/augur/augur_24.3.0-1_all.deb Size: 216432 MD5sum: b855b027e8c746cced69cbae40f0d18d SHA256: 093c5ffa521244b966b09d0cdb2db1418fc04ce68890fa9582082d3cfdad7c64 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt augur=24.3.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt augur=24.3.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1todh4nq 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1todh4nq 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/proc'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/proc'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/pts'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/pts'] 0m0.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/ptmx'] 0m0.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/ptmx'] 0m0.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/console'] 0m0.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/console'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/shm'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/shm'] 0m0.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp1todh4nq/tmp/scripts/ 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1todh4nq/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'update'] 0m5.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9872 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7196 kB] Fetched 17.3 MB in 4s (4300 kB/s) Reading package lists... 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'update'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', '-yf', 'dist-upgrade'] 0m7.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2385 kB of archives. After this operation, 31.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.2 [989 kB] Get:2 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.2 [1396 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2385 kB in 0s (24.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.2_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.2) over (2.9.1) ... Setting up libapt-pkg6.0t64:amd64 (2.9.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.2_amd64.deb ... Unpacking apt (2.9.2) over (2.9.1) ... Setting up apt (2.9.2) ... Processing triggers for libc-bin (2.37-18) ... 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', '-yf', 'dist-upgrade'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.3s DUMP: 5e5ffeed94e287a1c014496e3a7dba00 - 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.3s INFO: Running scripts post_setup 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_dummy_users'] 0m10.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_dummy_users'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_forbid_home'] 0m10.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_forbid_home'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_minimize'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_minimize'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_zz_backports'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_setup_zz_backports'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'clean'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'clean'] 0m10.7s DEBUG: Recording chroot state 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.2s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-6 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-6 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-6 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-6 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-divert', '--list'] 0m11.2s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-divert', '--list'] 0m11.2s INFO: Running scripts is_testable 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/is_testable_uninstallable'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/is_testable_uninstallable'] 0m11.2s INFO: apt-cache does not know about any of the requested packages 0m11.2s INFO: Running scripts pre_test 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_test_exceptions'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_test_exceptions'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_test_root_password'] 0m11.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_test_root_password'] 0m11.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 0m11.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 0m12.2s DEBUG: No broken symlinks as far as we can find. 0m12.2s INFO: Running scripts pre_install 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_database-server'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_database-server'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_exceptions'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_exceptions'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_extras'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_extras'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_log_alternatives'] 0m12.3s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_install_log_alternatives'] 0m12.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 0m12.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 0m13.1s DEBUG: No broken symlinks as far as we can find. 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-cache', 'policy'] 0m14.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-cache', 'policy'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-cache', 'policy', 'augur'] 0m14.3s DUMP: augur: Installed: (none) Candidate: 24.3.0-1 Version table: 24.3.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-cache', 'policy', 'augur'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', '-y', 'install', 'augur=24.3.0-1'] 2m26.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: blt ca-certificates fasttree fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 ipython3 libamd3 libblas3 libbrotli1 libbsd0 libcairo2 libcamd3 libccolamd3 libcholmod5 libcolamd3 libdeflate0 libdsdp-5.8t64 libexpat1 libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libltdl7 libncursesw6 libopenjp2-7 libperl5.38t64 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 libreadline8t64 libsharpyuv0 libsqlite3-0 libsuitesparseconfig7 libtcl8.6 libtiff6 libtk8.6 libumfpack6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 mafft media-types netbase openssl perl perl-modules-5.38 pigz python-matplotlib-data python3 python3-appdirs python3-asttokens python3-attr python3-bcbio-gff python3-biopython python3-boto3 python3-botocore python3-brotli python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-distutils python3-executing python3-fonttools python3-freetype python3-fs python3-hatch-vcs python3-hatchling python3-idna python3-importlib-metadata python3-ipdb python3-ipython python3-isodate python3-jedi python3-jmespath python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pathspec python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-referencing python3-reportlab python3-requests python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-setuptools-scm python3-six python3-stack-data python3-sympy python3-tk python3-toml python3-traitlets python3-treetime python3-trove-classifiers python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wcwidth python3-xopen python3-zipp python3-zstandard python3.11 python3.11-minimal raxml readline-common seqmagick sgml-base tk8.6-blt2.5 unicode-data vcftools w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre libfftw3-bin libfftw3-dev gdbm-l10n low-memory-monitor libiodbc2-dev default-libmysqlclient-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libjs-jquery-ui-docs liblcms2-utils sensible-utils tcl8.6 tk8.6 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 samtools t-coffee wise python-charset-normalizer-doc python-cvxopt-doc python-cycler-doc python-ipython-doc python-jsonschema-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python-pygments-doc ttf-bitstream-vera python-pygtrie-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python-zstandard-doc python3.11-venv python3.11-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: iqtree libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libgpm2 blast2 libwww-perl lynx ruby python-biopython-doc ncbi-blast+ python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-yaml python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-jinja2 python3-numba python3-olefile fonts-dejavu-extra g++ | c++-compiler python3-patsy isympy-common tabix The following NEW packages will be installed: augur blt ca-certificates fasttree fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 ipython3 libamd3 libblas3 libbrotli1 libbsd0 libcairo2 libcamd3 libccolamd3 libcholmod5 libcolamd3 libdeflate0 libdsdp-5.8t64 libexpat1 libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libltdl7 libncursesw6 libopenjp2-7 libperl5.38t64 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 libreadline8t64 libsharpyuv0 libsqlite3-0 libsuitesparseconfig7 libtcl8.6 libtiff6 libtk8.6 libumfpack6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 mafft media-types netbase openssl perl perl-modules-5.38 pigz python-matplotlib-data python3 python3-appdirs python3-asttokens python3-attr python3-bcbio-gff python3-biopython python3-boto3 python3-botocore python3-brotli python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-distutils python3-executing python3-fonttools python3-freetype python3-fs python3-hatch-vcs python3-hatchling python3-idna python3-importlib-metadata python3-ipdb python3-ipython python3-isodate python3-jedi python3-jmespath python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pathspec python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-referencing python3-reportlab python3-requests python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-setuptools-scm python3-six python3-stack-data python3-sympy python3-tk python3-toml python3-traitlets python3-treetime python3-trove-classifiers python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wcwidth python3-xopen python3-zipp python3-zstandard python3.11 python3.11-minimal raxml readline-common seqmagick sgml-base tk8.6-blt2.5 unicode-data vcftools w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 198 newly installed, 0 to remove and 0 not upgraded. Need to get 149 MB of archives. After this operation, 731 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3.2 [2899 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-5.1+b1 [73.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1+b1 [48.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-3.2+b2 [4279 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3.2+b2 [236 kB] Get:6 http://deb.debian.org/debian sid/main amd64 pigz amd64 2.8-1 [62.7 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:10 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:11 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:12 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240414-1 [135 kB] Get:14 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:20 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:21 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:22 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:23 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get:26 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-6 [5472 kB] Get:29 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:34 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:35 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get:37 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:38 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:39 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:40 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:41 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get:54 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:55 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:56 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.12.3-1 [109 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:61 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:70 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-1 [114 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-1 [105 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:84 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.2.0-1 [1149 kB] Get:85 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:86 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-bcbio-gff all 0.7.1-1 [33.5 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libcamd3 amd64 1:7.7.0+dfsg-2 [36.0 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libccolamd3 amd64 1:7.7.0+dfsg-2 [37.9 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libcholmod5 amd64 1:7.7.0+dfsg-2 [623 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libdsdp-5.8t64 amd64 5.8-10.1 [181 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.10-1+b2 [779 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.4.7-7 [393 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6+b1 [107 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libgsl27 amd64 2.7.1+dfsg-6+b1 [934 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libumfpack6 amd64 1:7.7.0+dfsg-2 [267 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-cvxopt amd64 1.3.0+dfsg-1+b5 [290 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-isodate all 0.6.1-2 [24.9 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:108 http://deb.debian.org/debian sid/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:109 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:110 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get:111 http://deb.debian.org/debian sid/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get:112 http://deb.debian.org/debian sid/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-trove-classifiers all 2024.1.31-1 [9968 B] Get:114 http://deb.debian.org/debian sid/main amd64 python3-hatchling all 1.24.2-1 [53.2 kB] Get:115 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get:116 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get:117 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:118 http://deb.debian.org/debian sid/main amd64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get:119 http://deb.debian.org/debian sid/main amd64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get:120 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.12.0-3 [276 kB] Get:121 http://deb.debian.org/debian sid/main amd64 python3-referencing all 0.31.0-1 [22.2 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get:123 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.19.2-2 [71.2 kB] Get:124 http://deb.debian.org/debian sid/main amd64 python3-networkx all 2.8.8-2 [1425 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:127 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-7 [7883 kB] Get:128 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get:129 http://deb.debian.org/debian sid/main amd64 python3-pyfaidx all 0.8.1.1-1 [29.0 kB] Get:130 http://deb.debian.org/debian sid/main amd64 python3-pyfastx amd64 2.1.0-1 [68.4 kB] Get:131 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:132 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:133 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get:134 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:136 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get:137 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get:138 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:139 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get:140 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:141 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:142 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:143 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:144 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:145 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:146 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:150 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get:151 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:152 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:153 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:154 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-treetime all 0.11.1-1 [931 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-xopen all 1.7.0-2 [16.9 kB] Get:160 http://deb.debian.org/debian sid/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:161 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:162 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-botocore all 1.34.46+repack-1 [6464 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-s3transfer all 0.10.1-1 [55.6 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-boto3 all 1.34.46+dfsg-1 [269 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3-dendropy all 4.6.1-1 [277 kB] Get:170 http://deb.debian.org/debian sid/main amd64 python3-schedule all 1.2.1-0.1 [13.9 kB] Get:171 http://deb.debian.org/debian sid/main amd64 python3-seaborn all 0.13.2-3 [215 kB] Get:172 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.16.0-2+b1 [112 kB] Get:173 http://deb.debian.org/debian sid/main amd64 python3-zstandard amd64 0.22.0-1+b1 [365 kB] Get:174 http://deb.debian.org/debian sid/main amd64 python3-pygtrie all 2.2-2 [16.8 kB] Get:175 http://deb.debian.org/debian sid/main amd64 seqmagick all 0.8.6-2 [39.8 kB] Get:176 http://deb.debian.org/debian sid/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get:177 http://deb.debian.org/debian sid/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get:178 http://deb.debian.org/debian sid/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get:179 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.14.2-2 [70.6 kB] Get:180 http://deb.debian.org/debian sid/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get:181 http://deb.debian.org/debian sid/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get:182 http://deb.debian.org/debian sid/main amd64 python3-pexpect all 4.9-2 [55.5 kB] Get:183 http://deb.debian.org/debian sid/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get:184 http://deb.debian.org/debian sid/main amd64 python3-prompt-toolkit all 3.0.43-1 [276 kB] Get:185 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get:186 http://deb.debian.org/debian sid/main amd64 python3-asttokens all 2.4.1-1 [20.6 kB] Get:187 http://deb.debian.org/debian sid/main amd64 python3-executing all 2.0.1-0.1 [22.7 kB] Get:188 http://deb.debian.org/debian sid/main amd64 python3-pure-eval all 0.2.2-1 [11.2 kB] Get:189 http://deb.debian.org/debian sid/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get:190 http://deb.debian.org/debian sid/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get:191 http://deb.debian.org/debian sid/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get:192 http://deb.debian.org/debian sid/main amd64 ipython3 all 8.20.0-1 [33.2 kB] Get:193 http://deb.debian.org/debian sid/main amd64 python3-ipdb all 0.13.13-1 [17.2 kB] Get:194 http://deb.debian.org/debian sid/main amd64 mafft amd64 7.505-1 [1078 kB] Get:195 http://deb.debian.org/debian sid/main amd64 raxml amd64 8.2.13+dfsg-1 [1480 kB] Get:196 http://deb.debian.org/debian sid/main amd64 fasttree amd64 2.1.11-2 [181 kB] Get:197 http://deb.debian.org/debian sid/main amd64 vcftools amd64 0.1.16-3+b1 [431 kB] Get:198 http://deb.debian.org/debian sid/main amd64 augur all 24.3.0-1 [216 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 149 MB in 2s (84.2 MB/s) Selecting previously unselected package perl-modules-5.38. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5205 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../1-libgdbm6t64_1.23-5.1+b1_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.23-5.1+b1) ... Selecting previously unselected package libgdbm-compat4t64:amd64. 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Preparing to unpack .../8-python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7548 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.4+20240414-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240414-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.45.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.3-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../7-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. 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Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../004-libblas3_3.12.0-3_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../005-libgfortran5_14-20240330-1_amd64.deb ... Unpacking libgfortran5:amd64 (14-20240330-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../006-liblapack3_3.12.0-3_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../007-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../008-python3-numpy_1%3a1.26.4+ds-6_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-6) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../009-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../010-libtcl8.6_8.6.14+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../011-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:amd64. 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Selecting previously unselected package python3-fonttools. Preparing to unpack .../134-python3-fonttools_4.46.0-1_amd64.deb ... Unpacking python3-fonttools (4.46.0-1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../135-python3-kiwisolver_1.4.5-1_amd64.deb ... Unpacking python3-kiwisolver (1.4.5-1) ... Selecting previously unselected package libqhull-r8.0:amd64. Preparing to unpack .../136-libqhull-r8.0_2020.2-6+b1_amd64.deb ... Unpacking libqhull-r8.0:amd64 (2020.2-6+b1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../137-python3-matplotlib_3.6.3-2_amd64.deb ... Unpacking python3-matplotlib (3.6.3-2) ... Selecting previously unselected package python3-treetime. Preparing to unpack .../138-python3-treetime_0.11.1-1_all.deb ... Unpacking python3-treetime (0.11.1-1) ... Selecting previously unselected package python3-xopen. Preparing to unpack .../139-python3-xopen_1.7.0-2_all.deb ... Unpacking python3-xopen (1.7.0-2) ... Selecting previously unselected package python3-jmespath. Preparing to unpack .../140-python3-jmespath_1.0.1-1_all.deb ... Unpacking python3-jmespath (1.0.1-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../141-python3-urllib3_1.26.18-2_all.deb ... Unpacking python3-urllib3 (1.26.18-2) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../142-python3-certifi_2023.11.17-1_all.deb ... Unpacking python3-certifi (2023.11.17-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../143-python3-charset-normalizer_3.3.2-1_all.deb ... Unpacking python3-charset-normalizer (3.3.2-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../144-python3-idna_3.6-2_all.deb ... Unpacking python3-idna (3.6-2) ... Selecting previously unselected package python3-requests. 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Preparing to unpack .../174-mafft_7.505-1_amd64.deb ... Unpacking mafft (7.505-1) ... Selecting previously unselected package raxml. Preparing to unpack .../175-raxml_8.2.13+dfsg-1_amd64.deb ... Unpacking raxml (8.2.13+dfsg-1) ... Selecting previously unselected package fasttree. Preparing to unpack .../176-fasttree_2.1.11-2_amd64.deb ... Unpacking fasttree (2.1.11-2) ... Selecting previously unselected package vcftools. Preparing to unpack .../177-vcftools_0.1.16-3+b1_amd64.deb ... Unpacking vcftools (0.1.16-3+b1) ... Selecting previously unselected package augur. Preparing to unpack .../178-augur_24.3.0-1_all.deb ... Unpacking augur (24.3.0-1) ... Setting up media-types (10.1.0) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up liblcms2-2:amd64 (2.14-2+b1) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up libgdbm6t64:amd64 (1.23-5.1+b1) ... Setting up libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ... Setting up libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.20-1) ... Setting up libgsl27:amd64 (2.7.1+dfsg-6+b1) ... Setting up libqhull-r8.0:amd64 (2020.2-6+b1) ... Setting up libgomp1:amd64 (14-20240330-1) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up libglib2.0-0t64:amd64 (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up perl-modules-5.38 (5.38.2-3.2) ... Setting up libimagequant0:amd64 (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libtcl8.6:amd64 (8.6.14+dfsg-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.4+20240414-1) ... Setting up libltdl7:amd64 (2.4.7-7) ... Setting up libfftw3-double3:amd64 (3.3.10-1+b2) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up pigz (2.8-1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up fasttree (2.1.11-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:amd64 (1.3.2-0.4+b1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up raxml (8.2.13+dfsg-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.17.0-1) ... Setting up libamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libxcb-render0:amd64 (1.17.0-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Setting up libxcb-shm0:amd64 (1.17.0-1) ... Setting up libcamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up perl (5.38.2-3.2+b2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libglpk40:amd64 (5.0-1+b1) ... Setting up libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libdsdp-5.8t64 (5.8-10.1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up vcftools (0.1.16-3+b1) ... Setting up libcholmod5:amd64 (1:7.7.0+dfsg-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up mafft (7.505-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libumfpack6:amd64 (1:7.7.0+dfsg-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-pygtrie (2.2-2) ... Setting up python3-packaging (24.0-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-lxml:amd64 (5.2.1-1) ... Setting up python3-traitlets (5.14.2-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-cffi-backend:amd64 (1.16.0-2+b1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-prompt-toolkit (3.0.43-1) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-schedule (1.2.1-0.1) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-pure-eval (0.2.2-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-cvxopt (1.3.0+dfsg-1+b5) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-asttokens (2.4.1-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-tk:amd64 (3.12.3-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-networkx (2.8.8-2) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-zstandard (0.22.0-1+b1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-executing (2.0.1-0.1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pexpect (4.9-2) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-6) ... Setting up python3-reportlab (4.2.0-1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-hatchling (1.24.2-1) ... Setting up python3-dendropy (4.6.1-1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Setting up python3-pandas (2.1.4+dfsg-7) ... Setting up python3-ipython (8.20.0-1) ... Setting up python3-botocore (1.34.46+repack-1) ... Setting up ipython3 (8.20.0-1) ... Setting up python3-ipdb (0.13.13-1) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-pyfaidx (0.8.1.1-1) ... Setting up python3-s3transfer (0.10.1-1) ... Setting up python3-pyfastx (2.1.0-1) ... Setting up python3-jsonschema (4.19.2-2) ... Setting up python3-boto3 (1.34.46+dfsg-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up python3-seaborn (0.13.2-3) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Setting up python3-treetime (0.11.1-1) ... Setting up seqmagick (0.8.6-2) ... Setting up python3-bcbio-gff (0.7.1-1) ... Setting up augur (24.3.0-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m26.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', '-y', 'install', 'augur=24.3.0-1'] 2m26.9s INFO: Running scripts post_install 2m26.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_install_exceptions'] 2m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_install_exceptions'] 2m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_install_log_alternatives'] 2m27.0s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=augur=24.3.0-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=augur=24.3.0-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=augur=24.3.0-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=augur=24.3.0-1: /usr/bin/update-alternatives --remove rename /usr/bin/prename 2m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_install_log_alternatives'] 2m27.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 2m28.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 2m32.5s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerifCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerifCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-Italic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-Italic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSerif-BoldItalic.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSerif-BoldItalic.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSansCondensed-Bold.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSansCondensed-Bold.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-Oblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-Oblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-ExtraLight.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-ExtraLight.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuSans-BoldOblique.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuSans-BoldOblique.ttf (python3-reportlab) /usr/lib/python3/dist-packages/reportlab/fonts/DejaVuMathTeXGyre.ttf -> ../../../../../share/fonts/truetype/dejavu/DejaVuMathTeXGyre.ttf (python3-reportlab) 2m32.6s INFO: /bin converted to /usr/bin by /usr merge 2m32.6s INFO: /lib converted to /usr/lib by /usr merge 2m32.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m32.6s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m32.6s INFO: /sbin converted to /usr/sbin by /usr merge 2m34.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', '-ac', '--ignore-obsolete'] 2m38.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', '-ac', '--ignore-obsolete'] 2m38.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m38.7s DUMP: 0.15.6 2m38.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m38.7s INFO: Running adequate version 0.15.6 now. 2m38.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'augur'] 2m38.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'augur'] 2m38.8s INFO: Running scripts pre_remove 2m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m43.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_exceptions'] 2m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/pre_remove_exceptions'] 2m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m44.0s DUMP: install ok installed apt apt 2.9.2 install ok installed augur augur 24.3.0-1 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.40-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed fasttree fasttree 2.1.11-2 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-lyx fonts-lyx 2.4.0~RC4-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed ipython3 ipython3 8.20.0-1 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libamd3:amd64 libamd3 1:7.7.0+dfsg-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcairo2:amd64 libcairo2 1.18.0-3+b1 install ok installed libcamd3:amd64 libcamd3 1:7.7.0+dfsg-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libccolamd3:amd64 libccolamd3 1:7.7.0+dfsg-2 install ok installed libcholmod5:amd64 libcholmod5 1:7.7.0+dfsg-2 install ok installed libcolamd3:amd64 libcolamd3 1:7.7.0+dfsg-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libdeflate0:amd64 libdeflate0 1.20-1 install ok installed libdsdp-5.8t64 libdsdp-5.8t64 5.8-10.1 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.10-1+b2 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b4 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-5.1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-5.1+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240330-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.78.4-7 install ok installed libglpk40:amd64 libglpk40 5.0-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgomp1:amd64 libgomp1 14-20240330-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgsl27:amd64 libgsl27 2.7.1+dfsg-6+b1 install ok installed libgslcblas0:amd64 libgslcblas0 2.7.1+dfsg-6+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed libltdl7:amd64 libltdl7 2.4.7-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-6 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240414-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-3.2+b2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b1 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.4+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.3-1 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.7.0+dfsg-2 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.14+dfsg-1 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.14-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libumfpack6:amd64 libumfpack6 1:7.7.0+dfsg-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-6 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.4+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.4+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.4+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mafft mafft 7.505-1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40-6 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.2.1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3.2+b2 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3.2 install ok installed pigz pigz 2.8-1 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-2 install ok installed python3 python3 3.11.8-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-asttokens python3-asttokens 2.4.1-1 install ok installed python3-attr python3-attr 23.2.0-2 install ok installed python3-bcbio-gff python3-bcbio-gff 0.7.1-1 install ok installed python3-biopython python3-biopython 1.83+dfsg1-2 install ok installed python3-boto3 python3-boto3 1.34.46+dfsg-1 install ok installed python3-botocore python3-botocore 1.34.46+repack-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-cairo python3-cairo 1.26.0-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.16.0-2+b1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-contourpy python3-contourpy 1.0.7-3 install ok installed python3-cvxopt python3-cvxopt 1.3.0+dfsg-1+b5 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dendropy python3-dendropy 4.6.1-1 install ok installed python3-distutils python3-distutils 3.12.3-1 install ok installed python3-executing python3-executing 2.0.1-0.1 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-freetype python3-freetype 2.4.0-1 install ok installed python3-fs python3-fs 2.4.16-4 install ok installed python3-hatch-vcs python3-hatch-vcs 0.4.0-1 install ok installed python3-hatchling python3-hatchling 1.24.2-1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-importlib-metadata python3-importlib-metadata 4.12.0-1 install ok installed python3-ipdb python3-ipdb 0.13.13-1 install ok installed python3-ipython python3-ipython 8.20.0-1 install ok installed python3-isodate python3-isodate 0.6.1-2 install ok installed python3-jedi python3-jedi 0.19.1+ds1-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-jsonschema python3-jsonschema 4.19.2-2 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.5-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-1 install ok installed python3-lxml:amd64 python3-lxml 5.2.1-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.6.3-2 install ok installed python3-matplotlib-inline python3-matplotlib-inline 0.1.6-2 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-more-itertools python3-more-itertools 10.2.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-networkx python3-networkx 2.8.8-2 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-6 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-7 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-7 install ok installed python3-parso python3-parso 0.8.3-1 install ok installed python3-pathspec python3-pathspec 0.12.1-1 install ok installed python3-pexpect python3-pexpect 4.9-2 install ok installed python3-pil:amd64 python3-pil 10.3.0-2 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.3.0-2 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pluggy python3-pluggy 1.5.0-1 install ok installed python3-prompt-toolkit python3-prompt-toolkit 3.0.43-1 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-5 install ok installed python3-pure-eval python3-pure-eval 0.2.2-1 install ok installed python3-pyfaidx python3-pyfaidx 0.8.1.1-1 install ok installed python3-pyfastx python3-pyfastx 2.1.0-1 install ok installed python3-pygments python3-pygments 2.17.2+dfsg-1 install ok installed python3-pygtrie python3-pygtrie 2.2-2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-referencing python3-referencing 0.31.0-1 install ok installed python3-reportlab python3-reportlab 4.2.0-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-rpds-py python3-rpds-py 0.12.0-3 install ok installed python3-s3transfer python3-s3transfer 0.10.1-1 install ok installed python3-schedule python3-schedule 1.2.1-0.1 install ok installed python3-scipy python3-scipy 1.11.4-6 install ok installed python3-seaborn python3-seaborn 0.13.2-3 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-setuptools-scm python3-setuptools-scm 8.0.4-2 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-stack-data python3-stack-data 0.6.3-1 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tk:amd64 python3-tk 3.12.3-1 install ok installed python3-toml python3-toml 0.10.2-1 install ok installed python3-traitlets python3-traitlets 5.14.2-2 install ok installed python3-treetime python3-treetime 0.11.1-1 install ok installed python3-trove-classifiers python3-trove-classifiers 2024.1.31-1 install ok installed python3-typeshed python3-typeshed 0.0~git20231111.6764465-3 install ok installed python3-typing-extensions python3-typing-extensions 4.10.0-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3-wcwidth python3-wcwidth 0.2.13+dfsg1-1 install ok installed python3-xopen python3-xopen 1.7.0-2 install ok installed python3-zipp python3-zipp 1.0.0-6 install ok installed python3-zstandard python3-zstandard 0.22.0-1+b1 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed raxml raxml 8.2.13+dfsg-1 install ok installed readline-common readline-common 8.2-4 install ok installed sed sed 4.9-2 install ok installed seqmagick seqmagick 0.8.6-2 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed tzdata tzdata 2024a-3 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-6 install ok installed vcftools vcftools 0.1.16-3+b1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 2m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'remove', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ipython3', 'libamd3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libopenjp2-7:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'mafft', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.38', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'raxml', 'readline-common', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'augur'] 3m46.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: augur blt ca-certificates fasttree fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 ipython3 libamd3 libblas3 libbrotli1 libbsd0 libcairo2 libcamd3 libccolamd3 libcholmod5 libcolamd3 libdeflate0 libdsdp-5.8t64 libexpat1 libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libltdl7 libncursesw6 libopenjp2-7 libperl5.38t64 libpixman-1-0 libpng16-16t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 libreadline8t64 libsharpyuv0 libsqlite3-0 libsuitesparseconfig7 libtcl8.6 libtiff6 libtk8.6 libumfpack6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 mafft media-types netbase openssl perl perl-modules-5.38 pigz python-matplotlib-data python3 python3-appdirs python3-asttokens python3-attr python3-bcbio-gff python3-biopython python3-boto3 python3-botocore python3-brotli python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-distutils python3-executing python3-fonttools python3-freetype python3-fs python3-hatch-vcs python3-hatchling python3-idna python3-importlib-metadata python3-ipdb python3-ipython python3-isodate python3-jedi python3-jmespath python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pathspec python3-pexpect python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-referencing python3-reportlab python3-requests python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-setuptools-scm python3-six python3-stack-data python3-sympy python3-tk python3-toml python3-traitlets python3-treetime python3-trove-classifiers python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wcwidth python3-xopen python3-zipp python3-zstandard python3.11 python3.11-minimal raxml readline-common seqmagick sgml-base tk8.6-blt2.5 unicode-data vcftools w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 198 to remove and 0 not upgraded. After this operation, 731 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 33402 files and directories currently installed.) Removing augur (24.3.0-1) ... Removing seqmagick (0.8.6-2) ... Removing python3-treetime (0.11.1-1) ... Removing python3-seaborn (0.13.2-3) ... Removing python3-matplotlib (3.6.3-2) ... Removing python3-pil.imagetk:amd64 (10.3.0-2) ... Removing python3-tk:amd64 (3.12.3-1) ... Removing blt (2.5.3+dfsg-7) ... Removing python3-boto3 (1.34.46+dfsg-1) ... Removing python3-s3transfer (0.10.1-1) ... Removing python3-botocore (1.34.46+repack-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing fasttree (2.1.11-2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing libtk8.6:amd64 (8.6.14-1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing python-matplotlib-data (3.6.3-2) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-lyx (2.4.0~RC4-1) ... Removing python3-ipdb (0.13.13-1) ... Removing ipython3 (8.20.0-1) ... Removing python3-cvxopt (1.3.0+dfsg-1+b5) ... Removing libumfpack6:amd64 (1:7.7.0+dfsg-2) ... Removing libcholmod5:amd64 (1:7.7.0+dfsg-2) ... Removing python3-pandas (2.1.4+dfsg-7) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libcamd3:amd64 (1:7.7.0+dfsg-2) ... Removing libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Removing libglpk40:amd64 (5.0-1+b1) ... Removing libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Removing libdsdp-5.8t64 (5.8-10.1) ... Removing python3-jsonschema (4.19.2-2) ... Removing python3-jsonschema-specifications (2023.12.1-1) ... Removing python3-referencing (0.31.0-1) ... Removing python3-rpds-py (0.12.0-3) ... Removing python3-hatch-vcs (0.4.0-1) ... Removing python3-setuptools-scm (8.0.4-2) ... Removing python3-ipython (8.20.0-1) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.12.3-1) ... Removing python3-zstandard (0.22.0-1+b1) ... Removing python3-prompt-toolkit (3.0.43-1) ... Removing python3-wcwidth (0.2.13+dfsg1-1) ... Removing libfftw3-double3:amd64 (3.3.10-1+b2) ... Removing vcftools (0.1.16-3+b1) ... Removing mafft (7.505-1) ... Removing perl (5.38.2-3.2+b2) ... Removing libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Removing libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Removing libgdbm6t64:amd64 (1.23-5.1+b1) ... Removing libgsl27:amd64 (2.7.1+dfsg-6+b1) ... Removing libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libltdl7:amd64 (2.4.7-7) ... Removing libqhull-r8.0:amd64 (2020.2-6+b1) ... Removing python3-pyfastx (2.1.0-1) ... Removing libtcl8.6:amd64 (8.6.14+dfsg-1) ... Removing openssl (3.2.1-3) ... Removing perl-modules-5.38 (5.38.2-3.2) ... Removing python3-xopen (1.7.0-2) ... Removing pigz (2.8-1) ... Removing python3-stack-data (0.6.3-1) ... Removing python3-executing (2.0.1-0.1) ... Removing python3-asttokens (2.4.1-1) ... Removing python3-bcbio-gff (0.7.1-1) ... Removing python3-cffi-backend:amd64 (1.16.0-2+b1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-contourpy (1.0.7-3) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-dendropy (4.6.1-1) ... Removing python3-hatchling (1.24.2-1) ... Removing python3-idna (3.6-2) ... Removing python3-pyfaidx (0.8.1.1-1) ... Removing python3-importlib-metadata (4.12.0-1) ... Removing python3-isodate (0.6.1-2) ... Removing python3-jedi (0.19.1+ds1-1) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-kiwisolver (1.4.5-1) ... Removing python3-lib2to3 (3.12.3-1) ... Removing python3-matplotlib-inline (0.1.6-2) ... Removing python3-zipp (1.0.0-6) ... Removing python3-more-itertools (10.2.0-1) ... Removing python3-networkx (2.8.8-2) ... Removing python3-packaging (24.0-1) ... Removing python3-parso (0.8.3-1) ... Removing python3-pathspec (0.12.1-1) ... Removing python3-pexpect (4.9-2) ... Removing python3-pygments (2.17.2+dfsg-1) ... Removing python3-pluggy (1.5.0-1) ... Removing python3-ptyprocess (0.7.0-5) ... Removing python3-pure-eval (0.2.2-1) ... Removing python3-pygtrie (2.2-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-schedule (1.2.1-0.1) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-toml (0.10.2-1) ... Removing python3-traitlets (5.14.2-2) ... Removing python3-trove-classifiers (2024.1.31-1) ... Removing python3-typeshed (0.0~git20231111.6764465-3) ... Removing python3-typing-extensions (4.10.0-1) ... Removing raxml (8.2.13+dfsg-1) ... Removing python3-biopython (1.83+dfsg1-2) ... Removing python3-reportlab (4.2.0-1) ... Removing python3-pil:amd64 (10.3.0-2) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.26.0-1) ... Removing libcairo2:amd64 (1.18.0-3+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing fonts-urw-base35 (20200910-8) ... Removing libamd3:amd64 (1:7.7.0+dfsg-2) ... Removing xfonts-utils (1:7.7+6) ... Removing libraqm0:amd64 (0.10.1-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxcb-shm0:amd64 (1.17.0-1) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.20-1) ... Removing libfontenc1:amd64 (1:1.1.8-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libglib2.0-0t64:amd64 (2.78.4-7) ... Removing libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-2) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libgomp1:amd64 (14-20240330-1) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libwebpmux3:amd64 (1.3.2-0.4+b1) ... Removing libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Removing libwebp7:amd64 (1.3.2-0.4+b1) ... Removing libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Removing libxcb-render0:amd64 (1.17.0-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-freetype (2.4.0-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.17.0-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.12.2-1) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.11.4-6) ... Removing python3-numpy (1:1.26.4+ds-6) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libgfortran5:amd64 (14-20240330-1) ... Removing python3-lxml:amd64 (5.2.1-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing python3-fs (2.4.16-4) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-sympy (1.12-7) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-6) ... Removing python3-tz (2024.1-2) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing unicode-data (15.1.0-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing libblas3:amd64 (3.12.0-3) ... Removing python3-attr (23.2.0-2) ... Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.9-1) ... Removing python3-minimal (3.11.8-1) ... Removing python3.11-minimal (3.11.9-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240414-1) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.45.3-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.37-18) ... 3m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'remove', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ipython3', 'libamd3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libopenjp2-7:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'mafft', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.38', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'raxml', 'readline-common', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'augur'] 3m46.4s INFO: Running scripts post_remove 3m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_remove_exceptions'] 3m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_remove_exceptions'] 3m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--purge', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ipython3', 'libamd3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libopenjp2-7:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'mafft', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.38', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'raxml', 'readline-common', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 3m47.2s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed (Reading database ... 5268 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove fasttree which isn't installed Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove ipython3 which isn't installed dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcamd3 which isn't installed dpkg: warning: ignoring request to remove libccolamd3 which isn't installed dpkg: warning: ignoring request to remove libcholmod5 which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdsdp-5.8t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.78.4-7) ... dpkg: warning: ignoring request to remove libglpk40 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgsl27 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libperl5.38t64 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libumfpack6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.2.1-3) ... Purging configuration files for perl (5.38.2-3.2+b2) ... dpkg: warning: ignoring request to remove perl-modules-5.38 which isn't installed dpkg: warning: ignoring request to remove pigz which isn't installed Purging configuration files for python-matplotlib-data (3.6.3-2) ... Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-asttokens which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-bcbio-gff which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cvxopt which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dendropy which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-executing which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-hatch-vcs which isn't installed dpkg: warning: ignoring request to remove python3-hatchling which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-ipdb which isn't installed dpkg: warning: ignoring request to remove python3-ipython which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jedi which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed Purging configuration files for python3-jsonschema (4.19.2-2) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib-inline which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parso which isn't installed dpkg: warning: ignoring request to remove python3-pathspec which isn't installed dpkg: warning: ignoring request to remove python3-pexpect which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python3-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python3-pure-eval which isn't installed dpkg: warning: ignoring request to remove python3-pyfaidx which isn't installed dpkg: warning: ignoring request to remove python3-pyfastx which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pygtrie which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-schedule which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-seaborn which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-stack-data which isn't installed Purging configuration files for python3-sympy (1.12-7) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-treetime which isn't installed dpkg: warning: ignoring request to remove python3-trove-classifiers which isn't installed dpkg: warning: ignoring request to remove python3-typeshed which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3-xopen which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zstandard which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.2-4) ... dpkg: warning: ignoring request to remove seqmagick which isn't installed Purging configuration files for sgml-base (1.31) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed dpkg: warning: ignoring request to remove vcftools which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.19) ... 3m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--purge', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ipython3', 'libamd3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd3:amd64', 'libccolamd3:amd64', 'libcholmod5:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdsdp-5.8t64', 'libexpat1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libltdl7:amd64', 'libncursesw6:amd64', 'libopenjp2-7:amd64', 'libperl5.38t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libumfpack6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'mafft', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.38', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'raxml', 'readline-common', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 3m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--purge', 'augur'] 3m47.2s DUMP: dpkg: warning: ignoring request to remove augur which isn't installed 3m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--purge', 'augur'] 3m47.2s INFO: Running scripts post_purge 3m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_purge_exceptions'] 3m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_purge_exceptions'] 3m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--purge', '--pending'] 3m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--purge', '--pending'] 3m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--remove', '--pending'] 3m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg', '--remove', '--pending'] 3m47.2s INFO: Running scripts post_test 3m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_test_exceptions'] 3m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'tmp/scripts/post_test_exceptions'] 3m47.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 3m47.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 3m48.0s ERROR: WARN: Broken symlinks: /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf 3m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-divert', '--list'] 3m48.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 3m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'dpkg-divert', '--list'] 3m48.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'clean'] 3m48.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1todh4nq', 'apt-get', 'clean'] 3m48.0s DEBUG: Recording chroot state 3m48.6s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 3m48.6s INFO: PASS: Installation and purging test. 3m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/shm'] 3m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/shm'] 3m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/console'] 3m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/console'] 3m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/ptmx'] 3m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/ptmx'] 3m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/pts'] 3m49.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/dev/pts'] 3m49.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/proc'] 3m49.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1todh4nq/proc'] 3m49.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 3m49.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1todh4nq'] 3m49.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1todh4nq 3m49.2s INFO: PASS: All tests. 3m49.2s INFO: piuparts run ends. ret=0 End: 2024-04-24 15:58:35 GMT