Start: 2024-02-15 18:27:53 GMT Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description: DICOM converter with support for structure heuristics Homepage: https://github.com/nipy/heudiconv Description-md5: 1c97e589188a732262069fcb46088fb7 Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt heudiconv=0.11.6-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt heudiconv=0.11.6-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpmf7oh178 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpmf7oh178 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpmf7oh178/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpmf7oh178/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'update'] 0m4.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9734 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7142 kB] Fetched 17.1 MB in 3s (5358 kB/s) Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', '-yf', 'dist-upgrade'] 0m5.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', '-yf', 'dist-upgrade'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s DUMP: c5fddb1dedc6e7bcb97c5b5936d6f2b6 - 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.8s INFO: Running scripts post_setup 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_dummy_users'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_forbid_home'] 0m7.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_forbid_home'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_minimize'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_setup_zz_backports'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'clean'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'clean'] 0m7.0s DEBUG: Recording chroot state 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.4s DUMP: install ok installed apt apt 2.7.11 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.11 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-divert', '--list'] 0m7.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-divert', '--list'] 0m7.4s INFO: Running scripts is_testable 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/is_testable_uninstallable'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/is_testable_uninstallable'] 0m7.5s INFO: apt-cache does not know about any of the requested packages 0m7.5s INFO: Running scripts pre_test 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_test_exceptions'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_test_exceptions'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_test_root_password'] 0m7.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_test_root_password'] 0m7.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 0m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 0m8.2s DEBUG: No broken symlinks as far as we can find. 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_log_alternatives'] 0m8.3s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_install_log_alternatives'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 0m8.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 0m8.9s DEBUG: No broken symlinks as far as we can find. 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-cache', 'policy'] 0m10.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-cache', 'policy'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-cache', 'policy', 'heudiconv'] 0m10.0s DUMP: heudiconv: Installed: (none) Candidate: 0.11.6-1 Version table: 0.11.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-cache', 'policy', 'heudiconv'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', '-y', 'install', 'heudiconv=0.11.6-1'] 1m28.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates dcm2niix libaec0 libblas3 libbrotli1 libcurl4 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 libtirpc-common libtirpc3 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv python-charset-normalizer-doc python-dipy-doc python-funcsigs-doc python-h5py-doc python-jsonpickle-doc python-lxml-doc python-nibabel-doc afni python3-nipy slicer matlab-spm8 python3-pyxnat mne-python elastix ants python3-pytest-xdist python3-bids gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python-prov-doc python3-pydot python3-matplotlib python3-gdcm python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-brotli python3.11-venv python3.11-doc binutils binfmt-support python3.12-venv python3.12-doc readline-doc Recommended packages: pigz python3-pytest python3-datalad javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-clevercsv python3-matplotlib python3-vtk9 python3-tables python3-sklearn python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-yaml python3-fuse ipython3 graphviz python3-xvfbwrapper mayavi2 python3-mock python3-pydotplus python3-cfflib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-jinja2 python3-numba python3-pil python3-sparqlwrapper g++ | c++-compiler The following NEW packages will be installed: ca-certificates dcm2niix heudiconv libaec0 libblas3 libbrotli1 libcurl4 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 libtirpc-common libtirpc3 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After this operation, 451 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-1 [817 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-1 [2037 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:11 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-1 [1825 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-1 [597 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:22 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-1 [807 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.2-1 [2186 kB] Get:25 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:26 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b2 [190 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libturbojpeg0 amd64 1:2.1.5-2+b2 [210 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6 [132 kB] Get:30 http://deb.debian.org/debian sid/main amd64 dcm2niix amd64 1.0.20220720-1+b1 [245 kB] Get:31 http://deb.debian.org/debian sid/main amd64 python3-pydicom all 2.4.3-1 [1120 kB] Get:32 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-1 [1929 kB] Get:34 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.2-1 [653 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get:37 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:41 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:42 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.10.1-10 [19.7 MB] Get:43 http://deb.debian.org/debian sid/main amd64 python3-nibabel all 5.2.0-3 [2658 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-4 [150 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-dcmstack all 0.9-1 [75.8 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.13.1-1 [10.5 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.6-1 [93.8 kB] Get:51 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-ci-info all 0.3.0-1 [7584 B] Get:54 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:60 http://deb.debian.org/debian sid/main amd64 python3-etelemetry all 0.3.1-1 [7244 B] Get:61 http://deb.debian.org/debian sid/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-isodate all 0.6.1-2 [24.9 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-rdflib all 6.1.1-3 [383 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-prov all 2.0.0-2 [95.6 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-traits amd64 6.3.2-1+b4 [4817 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:78 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libcurl4 amd64 8.6.0-2 [431 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.2-1 [23.4 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.2-1 [7684 B] Get:83 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.10+repack-3+b1 [1243 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.10+repack-3+b1 [63.3 kB] Get:85 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4 [10.1 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.10.0-1 [1399 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.64.1-2 [93.7 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-jsonpickle all 3.0.2+dfsg-1 [41.5 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-ordered-set all 4.1.0-1 [9628 B] Get:91 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-deepdiff all 6.7.1-1 [65.5 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.9.0-1 [63.9 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-trx-python all 0.2.9-1 [40.2 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-1 [30.8 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-4 [7886 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-4 [3015 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-dipy-lib amd64 1.8.0-2 [3867 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-dipy all 1.8.0-2 [3458 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-funcsigs all 1.0.2-5 [14.0 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-1 [225 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-nipype all 1.8.6-2 [1863 kB] Get:107 http://deb.debian.org/debian sid/main amd64 heudiconv all 0.11.6-1 [7610 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 103 MB in 5s (20.5 MB/s) Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5226 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.8-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_amd64.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:amd64 (3.11.8-1) ... Setting up libexpat1:amd64 (2.6.0-1) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5542 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.6-1_amd64.deb ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6079 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.6-1_amd64.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../01-libpython3.12-minimal_3.12.2-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.2-1) ... Selecting previously unselected package python3.12-minimal. 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Setting up libturbojpeg0:amd64 (1:2.1.5-2+b2) ... Setting up libaec0:amd64 (1.1.2-1) ... Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up liblzf1:amd64 (3.6-4) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:amd64 (14-20240201-3) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b2) ... Setting up libssh2-1:amd64 (1.11.0-4) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.1.5-1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up libsz2:amd64 (1.1.2-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-3) ... Setting up dcm2niix (1.0.20220720-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libjs-sphinxdoc (7.2.6-4) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libcurl4:amd64 (8.6.0-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.2-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up python3 (3.11.6-1) ... Setting up python3-psutil (5.9.8-1) ... Setting up python3-tz (2024.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-funcsigs (1.0.2-5) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.9.0-1) ... Setting up python3-ci-info (0.3.0-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-lxml:amd64 (5.1.0-1) ... Setting up python3-pydicom (2.4.3-1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-filelock (3.13.1-1) ... Setting up python3-jsonpickle (3.0.2+dfsg-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-traits (6.3.2-1+b4) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-tqdm (4.64.1-2) ... Setting up python3-ordered-set (4.1.0-1) ... Setting up python3-click (8.1.6-1) ... Setting up python3-networkx (2.8.8-1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' "graph [edge [ source u'u\4200' target u'u\4200' ] " /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' + "node [ id u'u\4200' label b ] ]" Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-rdflib (6.1.1-3) ... /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' """Converts the given graph into a networkx.MultiDiGraph. /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' """Converts the given graph into a networkx.DiGraph. /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' """Converts the given graph into a networkx.Graph. Setting up python3-deepdiff (6.7.1-1) ... Setting up python3-scipy (1.10.1-10) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-4) ... Setting up python3-h5py-serial (3.10.0-1) ... Setting up python3-prov (2.0.0-2) ... Setting up python3-etelemetry (0.3.1-1) ... Setting up python3-dipy-lib:amd64 (1.8.0-2) ... Setting up python3-pandas (2.1.4+dfsg-4) ... Setting up python3-nibabel (5.2.0-3) ... Setting up python3-h5py (3.10.0-1) ... Setting up python3-trx-python (0.2.9-1) ... Setting up python3-dipy (1.8.0-2) ... /usr/lib/python3/dist-packages/dipy/reconst/qti.py:19: SyntaxWarning: invalid escape sequence '\m' """Convert symmetric 3 x 3 matrices into 6 x 1 vectors. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:57: SyntaxWarning: invalid escape sequence '\m' """Convert 6 x 1 vectors into symmetric 3 x 3 matrices. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:91: SyntaxWarning: invalid escape sequence '\m' """Convert symmetric 6 x 6 matrices into 21 x 1 vectors. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:137: SyntaxWarning: invalid escape sequence '\m' """Convert 21 x 1 vectors into symmetric 6 x 6 matrices. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:187: SyntaxWarning: invalid escape sequence '\m' """Convert a 1 x 6 vector into a symmetric 3 x 3 matrix. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:222: SyntaxWarning: invalid escape sequence '\m' """Convert 1 x 21 vector into a symmetric 6 x 6 matrix. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:280: SyntaxWarning: invalid escape sequence '\m' """Calculate covariance of a diffusion tensor distribution (DTD). /usr/lib/python3/dist-packages/dipy/reconst/qti.py:323: SyntaxWarning: invalid escape sequence '\e' """Generate signals using the covariance tensor signal representation. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:395: SyntaxWarning: invalid escape sequence '\m' """Calculate the design matrix from the b-tensors. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:761: SyntaxWarning: invalid escape sequence '\l' """Mean diffusivity. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:783: SyntaxWarning: invalid escape sequence '\m' """Variance of microscopic mean diffusivities. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:805: SyntaxWarning: invalid escape sequence '\m' """Shear variance. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:827: SyntaxWarning: invalid escape sequence '\m' """Total isotropic variance. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:863: SyntaxWarning: invalid escape sequence '\l' """Average of microscopic diffusion tensors' outer products with /usr/lib/python3/dist-packages/dipy/reconst/qti.py:886: SyntaxWarning: invalid escape sequence '\m' """Normalized variance of mean diffusivities. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:909: SyntaxWarning: invalid escape sequence '\m' """Normalized microscopic anisotropy. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:934: SyntaxWarning: invalid escape sequence '\m' """Microscopic fractional anisotropy. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:953: SyntaxWarning: invalid escape sequence '\l' """Normalized macroscopic anisotropy. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:979: SyntaxWarning: invalid escape sequence '\s' """Fractional anisotropy. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:998: SyntaxWarning: invalid escape sequence '\m' """Microscopic orientation coherence. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:1036: SyntaxWarning: invalid escape sequence '\m' """Bulk kurtosis. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:1061: SyntaxWarning: invalid escape sequence '\m' """Shear kurtosis. /usr/lib/python3/dist-packages/dipy/reconst/qti.py:1086: SyntaxWarning: invalid escape sequence '\m' """Microscopic kurtosis. /usr/lib/python3/dist-packages/dipy/workflows/docstring_parser.py:308: SyntaxWarning: invalid escape sequence '\w' if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str): /usr/lib/python3/dist-packages/dipy/workflows/docstring_parser.py:352: SyntaxWarning: invalid escape sequence '\*' return [self['Signature'].replace('*', '\*')] + [''] Setting up python3-dcmstack (0.9-1) ... Setting up python3-nipype (1.8.6-2) ... /usr/lib/python3/dist-packages/nipype/interfaces/io.py:1402: SyntaxWarning: invalid escape sequence '\w' field_name = re.match("\w+", field_name).group() /usr/lib/python3/dist-packages/nipype/interfaces/utility/base.py:232: SyntaxWarning: invalid escape sequence '\w' """Change the name of a file based on a mapped format string. Setting up heudiconv (0.11.6-1) ... /usr/lib/python3/dist-packages/heudiconv/bids.py:162: SyntaxWarning: invalid escape sequence '\s' """Aggregate across the entire BIDS dataset ``.json``\s into top level ``.json``\s /usr/lib/python3/dist-packages/heudiconv/bids.py:181: SyntaxWarning: invalid escape sequence '\_' for fpath in find_files('.*_task-.*\_bold\.json', /usr/lib/python3/dist-packages/heudiconv/bids.py:184: SyntaxWarning: invalid escape sequence '\.' exclude="/\.(datalad|heudiconv)/"): /usr/lib/python3/dist-packages/heudiconv/bids.py:190: SyntaxWarning: invalid escape sequence '\.' task = re.sub('.*_(task-[^_\.]*(_acq-[^_\.]*)?)_.*', r'\1', fpath) Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', '-y', 'install', 'heudiconv=0.11.6-1'] 1m28.9s INFO: Running scripts post_install 1m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_install_exceptions'] 1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_install_exceptions'] 1m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_install_log_alternatives'] 1m28.9s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=heudiconv=0.11.6-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=heudiconv=0.11.6-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=heudiconv=0.11.6-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 1m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_install_log_alternatives'] 1m28.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 1m30.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 1m33.0s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-traits/examples/tutorials/introduction -> ../../traits/examples/introduction (python3-traits) 1m33.0s INFO: /bin converted to /usr/bin by /usr merge 1m33.0s INFO: /lib converted to /usr/lib by /usr merge 1m33.0s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m33.0s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m33.0s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m33.0s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m33.0s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m33.0s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m33.0s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m33.0s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m33.0s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m33.0s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m33.0s INFO: /sbin converted to /usr/sbin by /usr merge 1m34.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', '-ac', '--ignore-obsolete'] 1m37.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', '-ac', '--ignore-obsolete'] 1m37.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.0s DUMP: 0.15.6 1m37.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m37.0s INFO: Running adequate version 0.15.6 now. 1m37.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'heudiconv'] 1m37.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'heudiconv'] 1m37.1s INFO: Running scripts pre_remove 1m37.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_exceptions'] 1m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/pre_remove_exceptions'] 1m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m40.2s DUMP: install ok installed apt apt 2.7.11 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed dcm2niix dcm2niix 1.0.20220720-1+b1 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed heudiconv heudiconv 0.11.6-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaec0:amd64 libaec0 1.1.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.11 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl4:amd64 libcurl4 8.6.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgfortran5:amd64 libgfortran5 14-20240201-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-3+b1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.10+repack-3+b1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzf1:amd64 liblzf1 3.6-4 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-1 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libsz2:amd64 libsz2 1.1.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libturbojpeg0:amd64 libturbojpeg0 1:2.1.5-2+b2 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-cpp0.8:amd64 libyaml-cpp0.8 0.8.0+dfsg-6 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.1.5-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl-base perl-base 5.38.2-3 install ok installed python3 python3 3.11.6-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-ci-info python3-ci-info 0.3.0-1 install ok installed python3-click python3-click 8.1.6-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-dcmstack python3-dcmstack 0.9-1 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-deepdiff python3-deepdiff 6.7.1-1 install ok installed python3-dipy python3-dipy 1.8.0-2 install ok installed python3-dipy-lib:amd64 python3-dipy-lib 1.8.0-2 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-etelemetry python3-etelemetry 0.3.1-1 install ok installed python3-filelock python3-filelock 3.13.1-1 install ok installed python3-funcsigs python3-funcsigs 1.0.2-5 install ok installed python3-h5py python3-h5py 3.10.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.10.0-1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-isodate python3-isodate 0.6.1-2 install ok installed python3-jsonpickle python3-jsonpickle 3.0.2+dfsg-1 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-lxml:amd64 python3-lxml 5.1.0-1 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-nibabel python3-nibabel 5.2.0-3 install ok installed python3-nipype python3-nipype 1.8.6-2 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-ordered-set python3-ordered-set 4.1.0-1 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-4 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-4 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-prov python3-prov 2.0.0-2 install ok installed python3-psutil python3-psutil 5.9.8-1 install ok installed python3-pydicom python3-pydicom 2.4.3-1 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-rdflib python3-rdflib 6.1.1-3 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-scipy python3-scipy 1.10.1-10 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-setuptools-scm python3-setuptools-scm 8.0.4-2 install ok installed python3-simplejson python3-simplejson 3.19.2-1+b1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tqdm python3-tqdm 4.64.1-2 install ok installed python3-traits python3-traits 6.3.2-1+b4 install ok installed python3-trx-python python3-trx-python 0.2.9-1 install ok installed python3-typing-extensions python3-typing-extensions 4.9.0-1 install ok installed python3-tz python3-tz 2024.1-1 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3.11 python3.11 3.11.8-1 install ok installed python3.11-minimal python3.11-minimal 3.11.8-1 install ok installed python3.12 python3.12 3.12.2-1 install ok installed python3.12-minimal python3.12-minimal 3.12.2-1 install ok installed readline-common readline-common 8.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 1m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'remove', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'heudiconv'] 1m50.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates dcm2niix heudiconv libaec0 libblas3 libbrotli1 libcurl4 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libnsl2 libopenjp2-7 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 libtirpc-common libtirpc3 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common 0 upgraded, 0 newly installed, 107 to remove and 0 not upgraded. After this operation, 451 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18960 files and directories currently installed.) Removing heudiconv (0.11.6-1) ... Removing python3-nipype (1.8.6-2) ... Removing python3-etelemetry (0.3.1-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing dcm2niix (1.0.20220720-1+b1) ... Removing python3-dipy (1.8.0-2) ... Removing python3-h5py (3.10.0-1) ... Removing python3-h5py-serial (3.10.0-1) ... Removing libhdf5-hl-100:amd64 (1.10.10+repack-3+b1) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Removing libsz2:amd64 (1.1.2-1) ... Removing libaec0:amd64 (1.1.2-1) ... Removing python3-dcmstack (0.9-1) ... Removing python3-trx-python (0.2.9-1) ... Removing python3-nibabel (5.2.0-3) ... Removing python3-scipy (1.10.1-10) ... Removing python3-pandas (2.1.4+dfsg-4) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-4) ... Removing python3-dipy-lib:amd64 (1.8.0-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing libcurl4:amd64 (8.6.0-2) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing python3-simplejson (3.19.2-1+b1) ... Removing python3-setuptools-scm (8.0.4-2) ... Removing python3-tqdm (4.64.1-2) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing python3-prov (2.0.0-2) ... Removing python3-lxml:amd64 (5.1.0-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libjs-sphinxdoc (7.2.6-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing liblzf1:amd64 (3.6-4) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b2) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libturbojpeg0:amd64 (1:2.1.5-2+b2) ... Removing libyaml-cpp0.8:amd64 (0.8.0+dfsg-6) ... Removing openssl (3.1.5-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-ci-info (0.3.0-1) ... Removing python3-click (8.1.6-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-deepdiff (6.7.1-1) ... Removing python3-filelock (3.13.1-1) ... Removing python3-funcsigs (1.0.2-5) ... Removing python3-idna (3.6-2) ... Removing python3-rdflib (6.1.1-3) ... Removing python3-isodate (0.6.1-2) ... Removing python3-jsonpickle (3.0.2+dfsg-1) ... Removing python3-networkx (2.8.8-1) ... Removing python3-ordered-set (4.1.0-1) ... Removing python3-packaging (23.2-1) ... Removing python3-psutil (5.9.8-1) ... Removing python3-pydicom (2.4.3-1) ... Removing python3-pyparsing (3.1.1-1) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-six (1.16.0-4) ... Removing python3-traits (6.3.2-1+b4) ... Removing python3-typing-extensions (4.9.0-1) ... Removing python3-tz (2024.1-1) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing python3.12 (3.12.2-1) ... Removing python3.12-minimal (3.12.2-1) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.11.5-1) ... Removing libgfortran5:amd64 (14-20240201-3) ... Removing libpython3.12-stdlib:amd64 (3.12.2-1) ... Removing libpython3.12-minimal:amd64 (3.12.2-1) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libnsl2:amd64 (1.3.0-3) ... Removing python3-minimal (3.11.6-1) ... Removing libreadline8:amd64 (8.2-3) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Removing python3.11-minimal (3.11.8-1) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libtirpc3:amd64 (1.3.4+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Removing libkrb5-3:amd64 (1.20.1-5+b1) ... Removing libk5crypto3:amd64 (1.20.1-5+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-5+b1) ... Removing libpython3.11-minimal:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libtirpc-common (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-15) ... 1m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'remove', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'heudiconv'] 1m50.2s INFO: Running scripts post_remove 1m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_remove_exceptions'] 1m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_remove_exceptions'] 1m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--purge', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common'] 1m50.5s DUMP: (Reading database ... 5238 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove dcm2niix which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libturbojpeg0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libyaml-cpp0.8 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.1.5-1) ... Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-ci-info which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dcmstack which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-deepdiff which isn't installed dpkg: warning: ignoring request to remove python3-dipy which isn't installed dpkg: warning: ignoring request to remove python3-dipy-lib which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-etelemetry which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-funcsigs which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jsonpickle which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-nibabel which isn't installed dpkg: warning: ignoring request to remove python3-nipype which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-ordered-set which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pydicom which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traits which isn't installed dpkg: warning: ignoring request to remove python3-trx-python which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.2-1) ... Purging configuration files for readline-common (8.2-3) ... 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--purge', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libopenjp2-7:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--purge', 'heudiconv'] 1m50.5s DUMP: dpkg: warning: ignoring request to remove heudiconv which isn't installed 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--purge', 'heudiconv'] 1m50.5s INFO: Running scripts post_purge 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_purge_exceptions'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_purge_exceptions'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--purge', '--pending'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--purge', '--pending'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--remove', '--pending'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg', '--remove', '--pending'] 1m50.5s INFO: Running scripts post_test 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_test_exceptions'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'tmp/scripts/post_test_exceptions'] 1m50.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 1m50.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 1m51.2s DEBUG: No broken symlinks as far as we can find. 1m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-divert', '--list'] 1m51.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 1m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'dpkg-divert', '--list'] 1m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'clean'] 1m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmf7oh178', 'apt-get', 'clean'] 1m51.3s DEBUG: Recording chroot state 1m51.8s INFO: PASS: Installation and purging test. 1m52.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/shm'] 1m52.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/shm'] 1m52.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/console'] 1m52.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/console'] 1m52.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/ptmx'] 1m52.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/ptmx'] 1m52.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/pts'] 1m52.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/dev/pts'] 1m52.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/proc'] 1m52.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmf7oh178/proc'] 1m52.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 1m52.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmf7oh178'] 1m52.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpmf7oh178 1m52.3s INFO: PASS: All tests. 1m52.3s INFO: piuparts run ends. ret=0 End: 2024-02-15 18:29:46 GMT