Start: 2024-03-01 03:23:29 GMT Package: macsyfinder Version: 2.1.3-1 Installed-Size: 37199 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-certifi, python3-colorama, python3-colorlog, python3-networkx, python3-packaging, python3-pandas, python3-yaml, python3:any, libjs-jquery (>= 3.6.0), libjs-sphinxdoc (>= 7.2.2), sphinx-rtd-theme-common (>= 2.0.0+dfsg), hmmer, ncbi-blast+, libjs-underscore Description: detection of macromolecular systems in protein datasets Homepage: https://github.com/gem-pasteur/macsyfinder Built-Using: sphinx (= 7.2.6-4) Description-md5: 0b9b635e7d46ea6cf9f81df42e76fb60 Section: science Priority: optional Filename: pool/main/m/macsyfinder/macsyfinder_2.1.3-1_amd64.deb Size: 14458980 MD5sum: b21001e1e848e73816a612730f8abd39 SHA256: 4b7ebb0ed5059881a77729f0fb7689a764cd4315d59121253e662478c399e6b6 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt macsyfinder=2.1.3-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt macsyfinder=2.1.3-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpszth0qld 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpszth0qld 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpszth0qld', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpszth0qld', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpszth0qld/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpszth0qld/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpszth0qld/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpszth0qld/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', 'update'] 0m4.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9874 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7210 kB] Fetched 17.3 MB in 3s (5512 kB/s) Reading package lists... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', 'update'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-yf', 'dist-upgrade'] 0m6.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be REMOVED: libcom-err2 libss2 libuuid1 The following NEW packages will be installed: libcom-err2t64 libss2t64 libuuid1t64 The following packages have been kept back: e2fsprogs The following packages will be upgraded: bsdutils libblkid1 libmount1 libpam-modules libpam-modules-bin libpam-runtime libsmartcols1 logsave mount sysvinit-utils util-linux 11 upgraded, 3 newly installed, 3 to remove and 1 not upgraded. Need to get 2519 kB of archives. After this operation, 14.3 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-6.1 [97.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libuuid1t64 amd64 2.39.3-6.1 [30.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-6.1 [1231 kB] Get:4 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-7 [32.2 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libss2t64 amd64 1.47.0-2.2 [24.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libcom-err2t64 amd64 1.47.0-2.2 [20.1 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-6 [54.2 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-6 [260 kB] Get:9 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-6.1 [143 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-6 [140 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-6.1 [159 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-6.1 [191 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-6.1 [116 kB] Get:14 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2.2 [19.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2519 kB in 0s (41.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5234 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.3-6.1_amd64.deb ... Unpacking bsdutils (1:2.39.3-6.1) over (1:2.39.3-6) ... Setting up bsdutils (1:2.39.3-6.1) ... dpkg: libuuid1:amd64: dependency problems, but removing anyway as you requested: util-linux depends on libuuid1 (>= 2.16). e2fsprogs depends on libuuid1 (>= 2.16). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5234 files and directories currently installed.) Removing libuuid1:amd64 (2.39.3-6) ... Selecting previously unselected package libuuid1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5228 files and directories currently installed.) Preparing to unpack .../libuuid1t64_2.39.3-6.1_amd64.deb ... Unpacking libuuid1t64:amd64 (2.39.3-6.1) ... Setting up libuuid1t64:amd64 (2.39.3-6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5235 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-6.1_amd64.deb ... Unpacking util-linux (2.39.3-6.1) over (2.39.3-6) ... Setting up util-linux (2.39.3-6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5235 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-7_amd64.deb ... Unpacking sysvinit-utils (3.08-7) over (3.08-6) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-7) ... dpkg: libss2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libss2 (>= 1.38). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5235 files and directories currently installed.) Removing libss2:amd64 (1.47.0-2+b1) ... Selecting previously unselected package libss2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5229 files and directories currently installed.) Preparing to unpack .../libss2t64_1.47.0-2.2_amd64.deb ... Unpacking libss2t64:amd64 (1.47.0-2.2) ... dpkg: libcom-err2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libcom-err2 (>= 1.43.9). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5235 files and directories currently installed.) Removing libcom-err2:amd64 (1.47.0-2+b1) ... Selecting previously unselected package libcom-err2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5229 files and directories currently installed.) Preparing to unpack .../libcom-err2t64_1.47.0-2.2_amd64.deb ... Unpacking libcom-err2t64:amd64 (1.47.0-2.2) ... Preparing to unpack .../libpam-modules-bin_1.5.3-6_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-6) over (1.5.3-4) ... Setting up libpam-modules-bin (1.5.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5235 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-6_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-6) over (1.5.3-4) ... Setting up libpam-modules:amd64 (1.5.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5233 files and directories currently installed.) Preparing to unpack .../mount_2.39.3-6.1_amd64.deb ... Unpacking mount (2.39.3-6.1) over (2.39.3-6) ... Preparing to unpack .../libpam-runtime_1.5.3-6_all.deb ... Unpacking libpam-runtime (1.5.3-6) over (1.5.3-4) ... Setting up libpam-runtime (1.5.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5233 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-6.1_amd64.deb ... Unpacking libblkid1:amd64 (2.39.3-6.1) over (2.39.3-6) ... Setting up libblkid1:amd64 (2.39.3-6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5233 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-6.1_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-6.1) over (2.39.3-6) ... Setting up libmount1:amd64 (2.39.3-6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5233 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.3-6.1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.3-6.1) over (2.39.3-6) ... Setting up libsmartcols1:amd64 (2.39.3-6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5233 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2.2_amd64.deb ... Unpacking logsave (1.47.0-2.2) over (1.47.0-2+b1) ... Setting up libcom-err2t64:amd64 (1.47.0-2.2) ... Setting up logsave (1.47.0-2.2) ... Setting up mount (2.39.3-6.1) ... Setting up libss2t64:amd64 (1.47.0-2.2) ... Processing triggers for libc-bin (2.37-15) ... 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-yf', 'dist-upgrade'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s DUMP: 3545097c7221f1b7eec7078f0200dd2c - 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s INFO: Running scripts post_setup 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_dummy_users'] 0m8.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_dummy_users'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_setup_zz_backports'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', 'clean'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', 'clean'] 0m8.4s DEBUG: Recording chroot state 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DUMP: install ok installed apt apt 2.7.13 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6.1 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.5 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240221-2.1 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.13 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.39.3-6.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2t64:amd64 libcom-err2t64 1.47.0-2.2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240221-2.1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.0-0.2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6.1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0t64:amd64 libpam0t64 1.5.3-4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6.1 install ok installed libss2t64:amd64 libss2t64 1.47.0-2.2 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240221-2.1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1t64:amd64 libuuid1t64 2.39.3-6.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.2 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6.1 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6.1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-divert', '--list'] 0m9.0s DUMP: diversion of /lib/x86_64-linux-gnu/libpam.so.0 to /lib/x86_64-linux-gnu/libpam.so.0.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpamc.so.0 to /lib/x86_64-linux-gnu/libpamc.so.0.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpam.so.0.85.1 to /lib/x86_64-linux-gnu/libpam.so.0.85.1.usr-is-merged by libpam0t64 local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libpam_misc.so.0 to /lib/x86_64-linux-gnu/libpam_misc.so.0.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpam_misc.so.0.82.1 to /lib/x86_64-linux-gnu/libpam_misc.so.0.82.1.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpamc.so.0.82.1 to /lib/x86_64-linux-gnu/libpamc.so.0.82.1.usr-is-merged by libpam0t64 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-divert', '--list'] 0m9.0s INFO: Running scripts is_testable 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/is_testable_uninstallable'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/is_testable_uninstallable'] 0m9.0s INFO: apt-cache does not know about any of the requested packages 0m9.0s INFO: Running scripts pre_test 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_test_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_test_exceptions'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_test_root_password'] 0m9.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_test_root_password'] 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 0m10.3s DEBUG: No broken symlinks as far as we can find. 0m10.3s INFO: Running scripts pre_install 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_log_alternatives'] 0m10.3s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_install_log_alternatives'] 0m10.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 0m10.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 0m11.4s DEBUG: No broken symlinks as far as we can find. 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-cache', 'policy'] 0m12.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-cache', 'policy'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-cache', 'policy', 'macsyfinder'] 0m12.6s DUMP: macsyfinder: Installed: (none) Candidate: 2.1.3-1 Version table: 2.1.3-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-cache', 'policy', 'macsyfinder'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-y', 'install', 'macsyfinder=2.1.3-1'] 0m48.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates fonts-font-awesome fonts-lato hmmer libblas3 libdivsufsort3 libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libgssapi-krb5-2 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblmdb0 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl2 libperl5.38 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 libsqlite3-0 libssl3t64 libtirpc-common libtirpc3 libyaml-0-2 media-types ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.38 python3 python3-certifi python3-colorama python3-colorlog python3-dateutil python3-minimal python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-six python3-tz python3-yaml python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common sphinx-rtd-theme-common Suggested packages: hmmer-doc gdbm-l10n krb5-doc krb5-user sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python3.11-venv python3.11-doc binutils binfmt-support python3.12-venv python3.12-doc readline-doc Recommended packages: javascript-common krb5-locales libgpm2 python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-scipy python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba The following packages will be REMOVED: libssl3 The following NEW packages will be installed: ca-certificates fonts-font-awesome fonts-lato hmmer libblas3 libdivsufsort3 libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libgssapi-krb5-2 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblmdb0 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl2 libperl5.38 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 libsqlite3-0 libssl3t64 libtirpc-common libtirpc3 libyaml-0-2 macsyfinder media-types ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.38 python3 python3-certifi python3-colorama python3-colorlog python3-dateutil python3-minimal python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-six python3-tz python3-yaml python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common sphinx-rtd-theme-common 0 upgraded, 67 newly installed, 1 to remove and 1 not upgraded. Need to get 84.2 MB of archives. After this operation, 376 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.1.5-1.1 [2058 kB] Get:2 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3 [2899 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-5+b1 [72.8 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-5+b1 [48.5 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libperl5.38 amd64 5.38.2-3 [4275 kB] Get:6 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3 [236 kB] Get:7 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-2 [817 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:10 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-2 [2037 kB] Get:11 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:12 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:13 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:18 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.1 [10.8 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:23 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3+b1 [167 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-2 [1827 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-2 [597 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:29 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-1 [807 kB] Get:31 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.2-1 [2186 kB] Get:32 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1.1 [1241 kB] Get:33 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:34 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libdivsufsort3 amd64 2.0.1-6 [45.6 kB] Get:36 http://deb.debian.org/debian sid/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240221-2.1 [836 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240221-2.1 [136 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-4 [150 kB] Get:43 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:44 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b1 [44.8 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libmbedcrypto7 amd64 2.28.7-1 [280 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libmbedx509-1 amd64 2.28.7-1 [130 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libmbedtls14 amd64 2.28.7-1 [165 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-1 [1929 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:51 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-colorlog all 6.8.0-1 [26.6 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.2-1 [653 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:60 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-5 [7883 kB] Get:62 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:64 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1021 kB] Get:65 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:66 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4 [12.5 MB] Get:67 http://deb.debian.org/debian sid/main amd64 macsyfinder amd64 2.1.3-1 [14.5 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.2 MB in 1s (129 MB/s) dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: coreutils depends on libssl3 (>= 3.0.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5235 files and directories currently installed.) Removing libssl3:amd64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... 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Unpacking python3.11-minimal (3.11.8-2) ... Setting up libpython3.11-minimal:amd64 (3.11.8-2) ... Setting up libexpat1:amd64 (2.6.0-1) ... Setting up python3.11-minimal (3.11.8-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7593 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.6-1_amd64.deb ... Unpacking python3-minimal (3.11.6-1) ... 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Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libmbedcrypto7:amd64 (2.28.7-1) ... Setting up perl-modules-5.38 (5.38.2-3) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libgfortran5:amd64 (14-20240221-2.1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libdivsufsort3:amd64 (2.0.1-6) ... Setting up openssl (3.1.5-1.1) ... Setting up readline-common (8.2-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (2.0.0+dfsg-1) ... Setting up libgdbm6:amd64 (1.23-5+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libmbedx509-1:amd64 (2.28.7-1) ... Setting up libmbedtls14:amd64 (2.28.7-1) ... Setting up libreadline8:amd64 (8.2-3+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libgdbm-compat4:amd64 (1.23-5+b1) ... Setting up libjs-sphinxdoc (7.2.6-4) ... Setting up hmmer (3.4+dfsg-2) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libperl5.38:amd64 (5.38.2-3) ... Setting up perl (5.38.2-3) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libpython3.12-stdlib:amd64 (3.12.2-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-2) ... Setting up python3.12 (3.12.2-1) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.8-2) ... Setting up python3 (3.11.6-1) ... Setting up python3-tz (2024.1-2) ... Setting up ncbi-blast+ (2.12.0+ds-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-packaging (23.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-colorlog (6.8.0-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-networkx (2.8.8-1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' "graph [edge [ source u'u\4200' target u'u\4200' ] " /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' + "node [ id u'u\4200' label b ] ]" Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-5) ... Setting up python3-pandas (2.1.4+dfsg-5) ... Setting up macsyfinder (2.1.3-1) ... /usr/lib/python3/dist-packages/macsypy/scripts/macsyconfig.py:282: SyntaxWarning: invalid escape sequence '\_' """ Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-y', 'install', 'macsyfinder=2.1.3-1'] 0m48.9s INFO: Running scripts post_install 0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_install_exceptions'] 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_install_exceptions'] 0m48.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_install_log_alternatives'] 0m48.9s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=macsyfinder=2.1.3-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=macsyfinder=2.1.3-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=macsyfinder=2.1.3-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=macsyfinder=2.1.3-1: /usr/bin/update-alternatives --remove rename /usr/bin/prename 0m48.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_install_log_alternatives'] 0m48.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 0m50.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 0m52.1s DEBUG: No broken symlinks as far as we can find. 0m52.1s INFO: /bin converted to /usr/bin by /usr merge 0m52.1s INFO: /lib converted to /usr/lib by /usr merge 0m52.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m52.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m52.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m52.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m52.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m52.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m52.1s INFO: /sbin converted to /usr/sbin by /usr merge 0m52.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpszth0qld', '-ac', '--ignore-obsolete'] 0m55.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpszth0qld', '-ac', '--ignore-obsolete'] 0m55.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.3s DUMP: 0.15.6 0m55.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.3s INFO: Running adequate version 0.15.6 now. 0m55.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'macsyfinder'] 0m55.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'macsyfinder'] 0m55.5s INFO: Running scripts pre_remove 0m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m55.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m57.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_exceptions'] 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/pre_remove_exceptions'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.4s DUMP: install ok installed apt apt 2.7.13 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6.1 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.5 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240221-2.1 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hmmer hmmer 3.4+dfsg-2 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.13 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.39.3-6.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2t64:amd64 libcom-err2t64 1.47.0-2.2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-6 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240221-2.1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5+b1 install ok installed libgdbm6:amd64 libgdbm6 1.23-5+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240221-2.1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240221-2.1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.0-0.2 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.7-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.7-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.7-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6.1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0t64:amd64 libpam0t64 1.5.3-4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libperl5.38:amd64 libperl5.38 5.38.2-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-2 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-1 install ok installed libreadline8:amd64 libreadline8 8.2-3+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2t64:amd64 libss2t64 1.47.0-2.2 install ok installed libssl3t64:amd64 libssl3t64 3.1.5-1.1 install ok installed libstdc++6:amd64 libstdc++6 14-20240221-2.1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libudev1:amd64 libudev1 255.4-1 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1t64:amd64 libuuid1t64 2.39.3-6.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.2 install ok installed macsyfinder macsyfinder 2.1.3-1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6.1 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-4 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-10 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.1.5-1.1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3 install ok installed perl-base perl-base 5.38.2-3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3 install ok installed python3 python3 3.11.6-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-colorlog python3-colorlog 6.8.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-5 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-5 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3.11 python3.11 3.11.8-2 install ok installed python3.11-minimal python3.11-minimal 3.11.8-2 install ok installed python3.12 python3.12 3.12.2-1 install ok installed python3.12-minimal python3.12-minimal 3.12.2-1 install ok installed readline-common readline-common 8.2-3 install ok installed sed sed 4.9-2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 2.0.0+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6.1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m57.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m57.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libssl3:amd64=3.1.5-1', 'ca-certificates-', 'fonts-font-awesome-', 'fonts-lato-', 'hmmer-', 'libblas3:amd64-', 'libdivsufsort3:amd64-', 'libexpat1:amd64-', 'libgdbm-compat4:amd64-', 'libgdbm6:amd64-', 'libgfortran5:amd64-', 'libgomp1:amd64-', 'libgssapi-krb5-2:amd64-', 'libjs-jquery-', 'libjs-sphinxdoc-', 'libjs-underscore-', 'libk5crypto3:amd64-', 'libkeyutils1:amd64-', 'libkrb5-3:amd64-', 'libkrb5support0:amd64-', 'liblapack3:amd64-', 'liblmdb0:amd64-', 'libmbedcrypto7:amd64-', 'libmbedtls14:amd64-', 'libmbedx509-1:amd64-', 'libncursesw6:amd64-', 'libnsl2:amd64-', 'libperl5.38:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.11-minimal:amd64-', 'libpython3.11-stdlib:amd64-', 'libpython3.12-minimal:amd64-', 'libpython3.12-stdlib:amd64-', 'libreadline8:amd64-', 'libsqlite3-0:amd64-', 'libssl3t64:amd64-', 'libtirpc-common-', 'libtirpc3:amd64-', 'libyaml-0-2:amd64-', 'media-types-', 'ncbi-blast+-', 'ncbi-data-', 'netbase-', 'openssl-', 'perl-', 'perl-modules-5.38-', 'python3-', 'python3-certifi-', 'python3-colorama-', 'python3-colorlog-', 'python3-dateutil-', 'python3-minimal-', 'python3-networkx-', 'python3-numpy-', 'python3-packaging-', 'python3-pandas-', 'python3-pandas-lib:amd64-', 'python3-pkg-resources-', 'python3-six-', 'python3-tz-', 'python3-yaml-', 'python3.11-', 'python3.11-minimal-', 'python3.12-', 'python3.12-minimal-', 'readline-common-', 'sphinx-rtd-theme-common-', 'macsyfinder-'] 1m3.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates fonts-font-awesome fonts-lato hmmer libblas3 libdivsufsort3 libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libgssapi-krb5-2 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblmdb0 libmbedcrypto7 libmbedtls14 libmbedx509-1 libncursesw6 libnsl2 libperl5.38 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 libsqlite3-0 libssl3t64 libtirpc-common libtirpc3 libyaml-0-2 macsyfinder media-types ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.38 python3 python3-certifi python3-colorama python3-colorlog python3-dateutil python3-minimal python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-six python3-tz python3-yaml python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common sphinx-rtd-theme-common The following NEW packages will be installed: libssl3 0 upgraded, 1 newly installed, 67 to remove and 1 not upgraded. Need to get 2063 kB of archives. After this operation, 376 MB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.5-1 [2063 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2063 kB in 0s (29.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13997 files and directories currently installed.) Removing macsyfinder (2.1.3-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing sphinx-rtd-theme-common (2.0.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing hmmer (3.4+dfsg-2) ... Removing python3-pandas (2.1.4+dfsg-5) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-5) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libdivsufsort3:amd64 (2.0.1-6) ... Removing python3.12 (3.12.2-1) ... Removing python3.12-minimal (3.12.2-1) ... Removing python3-yaml (6.0.1-2) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-six (1.16.0-4) ... Removing ncbi-blast+ (2.12.0+ds-4) ... Removing perl (5.38.2-3) ... Removing libperl5.38:amd64 (5.38.2-3) ... Removing libgdbm-compat4:amd64 (1.23-5+b1) ... Removing libgdbm6:amd64 (1.23-5+b1) ... Removing libgfortran5:amd64 (14-20240221-2.1) ... Removing libgomp1:amd64 (14-20240221-2.1) ... Removing libpython3.12-stdlib:amd64 (3.12.2-1) ... Removing libjs-sphinxdoc (7.2.6-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing liblmdb0:amd64 (0.9.31-1+b1) ... Removing libmbedtls14:amd64 (2.28.7-1) ... Removing libmbedx509-1:amd64 (2.28.7-1) ... Removing libmbedcrypto7:amd64 (2.28.7-1) ... Removing libpython3.12-minimal:amd64 (3.12.2-1) ... Removing openssl (3.1.5-1.1) ... dpkg: libexpat1:amd64: dependency problems, but removing anyway as you requested: python3.11-minimal depends on libexpat1 (>= 2.1~beta3). Removing libexpat1:amd64 (2.6.0-1) ... dpkg: libpython3-stdlib:amd64: dependency problems, but removing anyway as you requested: python3 depends on libpython3-stdlib (= 3.11.6-1). 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Removing python3-pkg-resources (68.1.2-2) ... Removing python3-tz (2024.1-2) ... Removing readline-common (8.2-3) ... Processing triggers for libc-bin (2.37-15) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. 1m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libssl3:amd64=3.1.5-1', 'ca-certificates-', 'fonts-font-awesome-', 'fonts-lato-', 'hmmer-', 'libblas3:amd64-', 'libdivsufsort3:amd64-', 'libexpat1:amd64-', 'libgdbm-compat4:amd64-', 'libgdbm6:amd64-', 'libgfortran5:amd64-', 'libgomp1:amd64-', 'libgssapi-krb5-2:amd64-', 'libjs-jquery-', 'libjs-sphinxdoc-', 'libjs-underscore-', 'libk5crypto3:amd64-', 'libkeyutils1:amd64-', 'libkrb5-3:amd64-', 'libkrb5support0:amd64-', 'liblapack3:amd64-', 'liblmdb0:amd64-', 'libmbedcrypto7:amd64-', 'libmbedtls14:amd64-', 'libmbedx509-1:amd64-', 'libncursesw6:amd64-', 'libnsl2:amd64-', 'libperl5.38:amd64-', 'libpython3-stdlib:amd64-', 'libpython3.11-minimal:amd64-', 'libpython3.11-stdlib:amd64-', 'libpython3.12-minimal:amd64-', 'libpython3.12-stdlib:amd64-', 'libreadline8:amd64-', 'libsqlite3-0:amd64-', 'libssl3t64:amd64-', 'libtirpc-common-', 'libtirpc3:amd64-', 'libyaml-0-2:amd64-', 'media-types-', 'ncbi-blast+-', 'ncbi-data-', 'netbase-', 'openssl-', 'perl-', 'perl-modules-5.38-', 'python3-', 'python3-certifi-', 'python3-colorama-', 'python3-colorlog-', 'python3-dateutil-', 'python3-minimal-', 'python3-networkx-', 'python3-numpy-', 'python3-packaging-', 'python3-pandas-', 'python3-pandas-lib:amd64-', 'python3-pkg-resources-', 'python3-six-', 'python3-tz-', 'python3-yaml-', 'python3.11-', 'python3.11-minimal-', 'python3.12-', 'python3.12-minimal-', 'readline-common-', 'sphinx-rtd-theme-common-', 'macsyfinder-'] 1m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libssl3:amd64=3.1.5-1'] 1m4.6s DUMP: Reading package lists... Building dependency tree... Reading state information... debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 1 not upgraded. Need to get 0 B/2063 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Preparing to unpack .../libssl3_3.1.5-1_amd64.deb ... Unpacking libssl3:amd64 (3.1.5-1) over (3.1.5-1) ... Setting up libssl3:amd64 (3.1.5-1) ... Processing triggers for libc-bin (2.37-15) ... 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libssl3:amd64=3.1.5-1'] 1m4.6s INFO: Running scripts post_remove 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_remove_exceptions'] 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_remove_exceptions'] 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--purge', 'ca-certificates', 'fonts-font-awesome', 'fonts-lato', 'hmmer', 'libblas3:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libperl5.38:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3t64:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.38', 'python3', 'python3-certifi', 'python3-colorama', 'python3-colorlog', 'python3-dateutil', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-six', 'python3-tz', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'sphinx-rtd-theme-common'] 1m4.8s DUMP: (Reading database ... 5254 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libperl5.38 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3t64 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-10) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.1.5-1.1) ... Purging configuration files for perl (5.38.2-3) ... dpkg: warning: ignoring request to remove perl-modules-5.38 which isn't installed Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-colorlog which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-2) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.2-1) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed 1m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--purge', 'ca-certificates', 'fonts-font-awesome', 'fonts-lato', 'hmmer', 'libblas3:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libncursesw6:amd64', 'libnsl2:amd64', 'libperl5.38:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3t64:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.38', 'python3', 'python3-certifi', 'python3-colorama', 'python3-colorlog', 'python3-dateutil', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-six', 'python3-tz', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'sphinx-rtd-theme-common'] 1m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--purge', 'macsyfinder'] 1m4.9s DUMP: (Reading database ... 5235 files and directories currently installed.) Purging configuration files for macsyfinder (2.1.3-1) ... 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--purge', 'macsyfinder'] 1m4.9s INFO: Running scripts post_purge 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_purge_exceptions'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_purge_exceptions'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--purge', '--pending'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--purge', '--pending'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--remove', '--pending'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg', '--remove', '--pending'] 1m4.9s INFO: Running scripts post_test 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_test_exceptions'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'tmp/scripts/post_test_exceptions'] 1m4.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 1m5.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 1m6.1s DEBUG: No broken symlinks as far as we can find. 1m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-divert', '--list'] 1m6.1s DUMP: diversion of /lib/x86_64-linux-gnu/libpam.so.0 to /lib/x86_64-linux-gnu/libpam.so.0.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpamc.so.0 to /lib/x86_64-linux-gnu/libpamc.so.0.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpam.so.0.85.1 to /lib/x86_64-linux-gnu/libpam.so.0.85.1.usr-is-merged by libpam0t64 local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libpam_misc.so.0 to /lib/x86_64-linux-gnu/libpam_misc.so.0.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpam_misc.so.0.82.1 to /lib/x86_64-linux-gnu/libpam_misc.so.0.82.1.usr-is-merged by libpam0t64 diversion of /lib/x86_64-linux-gnu/libpamc.so.0.82.1 to /lib/x86_64-linux-gnu/libpamc.so.0.82.1.usr-is-merged by libpam0t64 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'dpkg-divert', '--list'] 1m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', 'clean'] 1m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpszth0qld', 'apt-get', 'clean'] 1m6.1s DEBUG: Recording chroot state 1m6.9s INFO: PASS: Installation and purging test. 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/shm'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/shm'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/console'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/console'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/ptmx'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/ptmx'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/pts'] 1m7.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/dev/pts'] 1m7.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/proc'] 1m7.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpszth0qld/proc'] 1m7.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 1m7.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpszth0qld'] 1m7.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpszth0qld 1m7.5s INFO: PASS: All tests. 1m7.5s INFO: piuparts run ends. ret=0 End: 2024-03-01 03:24:37 GMT