Start: 2026-03-23 21:12:30 GMT Package: macsyfinder Version: 2.1.6-1 Installed-Size: 33713 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-macsylib, python3:any, libjs-jquery (>= 3.6.0), libjs-sphinxdoc (>= 8.2), sphinx-rtd-theme-common (>= 3.1.0+dfsg), python3-colorlog, hmmer, ncbi-blast+, libjs-underscore Description: detection of macromolecular systems in protein datasets Homepage: https://github.com/gem-pasteur/macsyfinder Built-Using: sphinx (= 8.2.3-12) Description-md5: 0b9b635e7d46ea6cf9f81df42e76fb60 Section: science Priority: optional Filename: pool/main/m/macsyfinder/macsyfinder_2.1.6-1_amd64.deb Size: 13993332 MD5sum: 21dd91a4bc2fafd09be876a15ab3f95c SHA256: c124f00649240f5d1d1cf6b2800c6597a9304137cfe1a4c8277413934f9026ba Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt macsyfinder=2.1.6-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt macsyfinder=2.1.6-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-44-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.164-1 (2026-03-09) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpbps8dlzo 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpbps8dlzo 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpbps8dlzo/tmp/scripts/ 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpbps8dlzo/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'update'] 0m2.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [187 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.4 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7544 kB] Fetched 18.1 MB in 2s (9669 kB/s) Reading package lists... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'update'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-16-base libgcc-s1 libstdc++6 libsystemd0 libudev1 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1454 kB of archives. After this operation, 4096 B disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16-20260322-1 [35.5 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16-20260322-1 [765 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16-20260322-1 [74.0 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 260.1-1 [446 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 260.1-1 [133 kB] Fetched 1454 kB in 0s (29.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../gcc-16-base_16-20260322-1_amd64.deb ... Unpacking gcc-16-base:amd64 (16-20260322-1) over (16-20260315-1) ... Setting up gcc-16-base:amd64 (16-20260322-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../libstdc++6_16-20260322-1_amd64.deb ... Unpacking libstdc++6:amd64 (16-20260322-1) over (16-20260315-1) ... Setting up libstdc++6:amd64 (16-20260322-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../libgcc-s1_16-20260322-1_amd64.deb ... Unpacking libgcc-s1:amd64 (16-20260322-1) over (16-20260315-1) ... Setting up libgcc-s1:amd64 (16-20260322-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../libsystemd0_260.1-1_amd64.deb ... Unpacking libsystemd0:amd64 (260.1-1) over (260-1) ... Setting up libsystemd0:amd64 (260.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4900 files and directories currently installed.) Preparing to unpack .../libudev1_260.1-1_amd64.deb ... Unpacking libudev1:amd64 (260.1-1) over (260-1) ... Setting up libudev1:amd64 (260.1-1) ... Processing triggers for libc-bin (2.42-13) ... 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s DUMP: 7f4c5f2780c6f750facdb23c8d80d366 - 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.7s INFO: Running scripts post_setup 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_forbid_home'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'clean'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'clean'] 0m5.9s DEBUG: Recording chroot state 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DUMP: install ok installed apt apt 3.1.16 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.41.3-4 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260322-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-13 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-13 install ok installed libc6:amd64 libc6 2.42-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260322-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-8 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-4 install ok installed libssl3t64:amd64 libssl3t64 3.6.1-3 install ok installed libstdc++6:amd64 libstdc++6 16-20260322-1 install ok installed libsystemd0:amd64 libsystemd0 260.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 260.1-1 install ok installed libuuid1:amd64 libuuid1 2.41.3-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed login login 1:4.16.0-2+really2.41.3-4 install ok installed login.defs login.defs 1:4.19.3-1 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.41.3-4 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.1-3 install ok installed passwd passwd 1:4.19.3-1 install ok installed perl-base perl-base 5.40.1-7 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-5 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026a-1 install ok installed util-linux util-linux 2.41.3-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-3 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-divert', '--list'] 0m6.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-divert', '--list'] 0m6.5s INFO: Running scripts is_testable 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/is_testable_uninstallable'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/is_testable_uninstallable'] 0m6.5s INFO: apt-cache does not know about any of the requested packages 0m6.5s INFO: Running scripts pre_test 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_test_exceptions'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_test_exceptions'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_test_root_password'] 0m6.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_test_root_password'] 0m6.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m6.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m7.1s DEBUG: No broken symlinks as far as we can find. 0m7.1s INFO: Running scripts pre_install 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_database-server'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_exceptions'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_extras'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_log_alternatives'] 0m7.1s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_install_log_alternatives'] 0m7.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m7.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m7.7s DEBUG: No broken symlinks as far as we can find. 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-cache', 'policy'] 0m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-cache', 'policy'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-cache', 'policy', 'macsyfinder'] 0m8.4s DUMP: macsyfinder: Installed: (none) Candidate: 2.1.6-1 Version table: 2.1.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-cache', 'policy', 'macsyfinder'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', '-y', 'install', 'macsyfinder=2.1.6-1'] 0m28.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates fonts-font-awesome fonts-lato hmmer isa-support libblas3 libdivsufsort3 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsqlite3-0 libuv1t64 libyaml-0-2 media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 python3 python3-certifi python3-colorama python3-colorlog python3-dateutil python3-macsylib python3-minimal python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pytz python3-yaml python3.13 python3.13-minimal readline-common sphinx-rtd-theme-common sse4.2-support Suggested packages: hmmer-doc gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc python3-statsmodels python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: javascript-common libgpm2 python3-git python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-scipy python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba The following NEW packages will be installed: ca-certificates fonts-font-awesome fonts-lato hmmer isa-support libblas3 libdivsufsort3 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsqlite3-0 libuv1t64 libyaml-0-2 macsyfinder media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 python3 python3-certifi python3-colorama python3-colorlog python3-dateutil python3-macsylib python3-minimal python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pytz python3-yaml python3.13 python3.13-minimal readline-common sphinx-rtd-theme-common sse4.2-support 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 475 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.5-1 [115 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:10 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Get:14 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Get:17 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [138 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7+b1 [209 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16-20260322-1 [886 kB] Get:20 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7+b1 [2550 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [7487 kB] Get:22 http://deb.debian.org/debian sid/main amd64 isa-support amd64 27+b1 [15.5 kB] Get:23 http://deb.debian.org/debian sid/main amd64 sse4.2-support amd64 27+b1 [3692 B] Get:24 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.1-3 [1514 kB] Get:25 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260223 [158 kB] Get:26 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b1 [78.9 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b1 [53.1 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-7 [4317 kB] Get:30 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-7 [267 kB] Get:31 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libdivsufsort3 amd64 2.0.1-7 [45.8 kB] Get:33 http://deb.debian.org/debian sid/main amd64 hmmer amd64 3.4+dfsg-3 [1079 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16-20260322-1 [151 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 8.2.3-12 [27.9 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.8~dfsg+~1.13.0-1 [84.1 kB] Get:38 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b3 [46.1 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.5-0.1 [363 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.5-0.1 [152 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.5-0.1 [246 kB] Get:42 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2+b1 [1180 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.68.0-2 [79.2 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.51.0-2+b1 [156 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.2.25+ds-1 [9612 B] Get:48 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:49 http://deb.debian.org/debian sid/main amd64 python3-colorlog all 6.10.1-1 [27.9 kB] Get:50 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.4.2-4 [24.1 MB] Get:51 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.0-1 [64.3 kB] Get:52 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2025.2-6 [31.2 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6583 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.3.3+dfsg-3 [2935 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.3-1 [186 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-macsylib all 1.0.4+dfsg-1 [85.0 kB] Get:58 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 3.1.0+dfsg-1 [1024 kB] Get:59 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-7 [3540 kB] Get:60 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.17.0+ds-7 [17.0 MB] Get:61 http://deb.debian.org/debian sid/main amd64 macsyfinder amd64 2.1.6-1 [14.0 MB] Preconfiguring packages ... Fetched 105 MB in 1s (124 MB/s) Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4905 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.5-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.5-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.12-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.12-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.12-1_amd64.deb ... Unpacking python3.13-minimal (3.13.12-1) ... Setting up libpython3.13-minimal:amd64 (3.13.12-1) ... Setting up libexpat1:amd64 (2.7.5-1) ... Setting up python3.13-minimal (3.13.12-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-9+b1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-9+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.12-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.12-1) ... 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Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../09-libdivsufsort3_2.0.1-7_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-7) ... Selecting previously unselected package hmmer. Preparing to unpack .../10-hmmer_3.4+dfsg-3_amd64.deb ... Unpacking hmmer (3.4+dfsg-3) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../11-libgomp1_16-20260322-1_amd64.deb ... Unpacking libgomp1:amd64 (16-20260322-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../12-libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb ... Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../13-libjs-sphinxdoc_8.2.3-12_all.deb ... Unpacking libjs-sphinxdoc (8.2.3-12) ... Selecting previously unselected package libjs-underscore. 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Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../20-libncbi-vdb3_3.2.1+dfsg-2+b1_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../21-libnghttp2-14_1.68.0-2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.68.0-2) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../22-libuv1t64_1.51.0-2+b1_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2+b1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../23-libyaml-0-2_0.2.5-2+b1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2+b1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../24-python3-certifi_2026.2.25+ds-1_all.deb ... Unpacking python3-certifi (2026.2.25+ds-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../25-python3-colorama_0.4.6-4_all.deb ... Unpacking python3-colorama (0.4.6-4) ... Selecting previously unselected package python3-colorlog. Preparing to unpack .../26-python3-colorlog_6.10.1-1_all.deb ... Unpacking python3-colorlog (6.10.1-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../27-python3-networkx_3.4.2-4_all.deb ... Unpacking python3-networkx (3.4.2-4) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../28-python3-packaging_26.0-1_all.deb ... Unpacking python3-packaging (26.0-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../29-python3-dateutil_2.9.0-4_all.deb ... Unpacking python3-dateutil (2.9.0-4) ... Selecting previously unselected package python3-pytz. Preparing to unpack .../30-python3-pytz_2025.2-6_all.deb ... Unpacking python3-pytz (2025.2-6) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../31-python3-pandas-lib_2.3.3+dfsg-3_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../32-python3-pandas_2.3.3+dfsg-3_all.deb ... Unpacking python3-pandas (2.3.3+dfsg-3) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../33-python3-yaml_6.0.3-1_amd64.deb ... Unpacking python3-yaml (6.0.3-1) ... Selecting previously unselected package python3-macsylib. Preparing to unpack .../34-python3-macsylib_1.0.4+dfsg-1_all.deb ... Unpacking python3-macsylib (1.0.4+dfsg-1) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../35-sphinx-rtd-theme-common_3.1.0+dfsg-1_all.deb ... Unpacking sphinx-rtd-theme-common (3.1.0+dfsg-1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../36-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../37-ncbi-blast+_2.17.0+ds-7_amd64.deb ... Unpacking ncbi-blast+ (2.17.0+ds-7) ... Selecting previously unselected package macsyfinder. Preparing to unpack .../38-macsyfinder_2.1.6-1_amd64.deb ... Unpacking macsyfinder (2.1.6-1) ... Setting up media-types (14.0.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b3) ... Setting up ncbi-data (6.1.20170106+dfsg2-7) ... Setting up fonts-lato (2.015-1) ... Setting up libgdbm6t64:amd64 (1.26-1+b1) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsqlite3-0:amd64 (3.46.1-9+b1) ... Setting up libuv1t64:amd64 (1.51.0-2+b1) ... Setting up libnghttp2-14:amd64 (1.68.0-2) ... Setting up libgomp1:amd64 (16-20260322-1) ... Setting up libblas3:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... Setting up libncursesw6:amd64 (6.6+20251231-1) ... Setting up libjs-sphinxdoc (8.2.3-12) ... Setting up libgfortran5:amd64 (16-20260322-1) ... Setting up libffi8:amd64 (3.5.2-3+b1) ... Setting up perl-modules-5.40 (5.40.1-7) ... Setting up sse4.2-support (27+b1) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.5-0.1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up libdivsufsort3:amd64 (2.0.1-7) ... Setting up openssl (3.6.1-3) ... Setting up readline-common (8.3-4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.1.0+dfsg-1) ... Setting up libjs-underscore (1.13.8~dfsg+~1.13.0-1) ... Setting up liblapack3:amd64 (3.12.1-7+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libperl5.40:amd64 (5.40.1-7) ... Setting up ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 144 added, 0 removed; done. Setting up perl (5.40.1-7) ... Setting up libmbedx509-7:amd64 (3.6.5-0.1) ... Setting up libmbedtls21:amd64 (3.6.5-0.1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up hmmer (3.4+dfsg-3) ... Setting up libpython3.13-stdlib:amd64 (3.13.12-1) ... Setting up libpython3-stdlib:amd64 (3.13.9-3) ... Setting up python3.13 (3.13.12-1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2+b1) ... Setting up python3 (3.13.9-3) ... Setting up python3-networkx (3.4.2-4) ... Setting up ncbi-blast+ (2.17.0+ds-7) ... Setting up python3-packaging (26.0-1) ... Setting up python3-certifi (2026.2.25+ds-1) ... Setting up python3-numpy (1:2.3.5+ds-3) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-colorlog (6.10.1-1) ... Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... Setting up python3-yaml (6.0.3-1) ... Setting up python3-pytz (2025.2-6) ... Setting up python3-pandas (2.3.3+dfsg-3) ... Setting up python3-macsylib (1.0.4+dfsg-1) ... Setting up macsyfinder (2.1.6-1) ... Processing triggers for libc-bin (2.42-13) ... Processing triggers for ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', '-y', 'install', 'macsyfinder=2.1.6-1'] 0m28.9s INFO: Running scripts post_install 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_install_exceptions'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_install_exceptions'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_install_log_alternatives'] 0m28.9s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=macsyfinder=2.1.6-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=macsyfinder=2.1.6-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=macsyfinder=2.1.6-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=macsyfinder=2.1.6-1: /usr/bin/update-alternatives --remove rename /usr/bin/prename 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_install_log_alternatives'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'systemd-tmpfiles', '--cat-config'] 0m28.9s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m28.9s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'systemd-tmpfiles', '--cat-config'] 0m29.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m29.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m30.8s DEBUG: No broken symlinks as far as we can find. 0m31.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', '-ac', '--ignore-obsolete'] 0m33.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', '-ac', '--ignore-obsolete'] 0m33.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m33.4s DUMP: 0.15.9~deb12u1 0m33.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m33.4s INFO: Running adequate version 0.15.9~deb12u1 now. 0m33.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'macsyfinder'] 0m33.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'macsyfinder'] 0m33.5s INFO: Running scripts pre_remove 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_exceptions'] 0m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/pre_remove_exceptions'] 0m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.4s DUMP: install ok installed apt apt 3.1.16 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.41.3-4 install ok installed ca-certificates ca-certificates 20260223 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-3 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260322-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hmmer hmmer 3.4+dfsg-3 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed isa-support:amd64 isa-support 27+b1 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-7+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-13 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-13 install ok installed libc6:amd64 libc6 2.42-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-7 install ok installed libexpat1:amd64 libexpat1 2.7.5-1 install ok installed libffi8:amd64 libffi8 3.5.2-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260322-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b1 install ok installed libgfortran5:amd64 libgfortran5 16-20260322-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libgomp1:amd64 libgomp1 16-20260322-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.2.3-12 install ok installed libjs-underscore libjs-underscore 1.13.8~dfsg+~1.13.0-1 install ok installed liblapack3:amd64 liblapack3 3.12.1-7+b1 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-8 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.5-0.1 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.5-0.1 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.5-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-4 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2+b1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.68.0-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-7 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.12-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.12-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9+b1 install ok installed libssl3t64:amd64 libssl3t64 3.6.1-3 install ok installed libstdc++6:amd64 libstdc++6 16-20260322-1 install ok installed libsystemd0:amd64 libsystemd0 260.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 260.1-1 install ok installed libuuid1:amd64 libuuid1 2.41.3-4 install ok installed libuv1t64:amd64 libuv1t64 1.51.0-2+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed login login 1:4.16.0-2+really2.41.3-4 install ok installed login.defs login.defs 1:4.19.3-1 install ok installed macsyfinder macsyfinder 2.1.6-1 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.41.3-4 install ok installed ncbi-blast+ ncbi-blast+ 2.17.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-7 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.6.1-3 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.1-3 install ok installed passwd passwd 1:4.19.3-1 install ok installed perl perl 5.40.1-7 install ok installed perl-base perl-base 5.40.1-7 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-7 install ok installed python3 python3 3.13.9-3 install ok installed python3-certifi python3-certifi 2026.2.25+ds-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-colorlog python3-colorlog 6.10.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-4 install ok installed python3-macsylib python3-macsylib 1.0.4+dfsg-1 install ok installed python3-minimal python3-minimal 3.13.9-3 install ok installed python3-networkx python3-networkx 3.4.2-4 install ok installed python3-numpy python3-numpy 1:2.3.5+ds-3 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.3.5+ds-3 install ok installed python3-packaging python3-packaging 26.0-1 install ok installed python3-pandas python3-pandas 2.3.3+dfsg-3 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.3.3+dfsg-3 install ok installed python3-pytz python3-pytz 2025.2-6 install ok installed python3-yaml python3-yaml 6.0.3-1 install ok installed python3.13 python3.13 3.13.12-1 install ok installed python3.13-minimal python3.13-minimal 3.13.12-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 3.1.0+dfsg-1 install ok installed sqv sqv 1.3.0-5 install ok installed sse4.2-support sse4.2-support 27+b1 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026a-1 install ok installed util-linux util-linux 2.41.3-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-3 0m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fonts-font-awesome', 'fonts-lato', 'hmmer', 'isa-support:amd64', 'libblas3:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-certifi', 'python3-colorama', 'python3-colorlog', 'python3-dateutil', 'python3-macsylib', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-yaml', 'python3.13', 'python3.13-minimal', 'readline-common', 'sphinx-rtd-theme-common', 'sse4.2-support', 'macsyfinder'] 0m37.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates fonts-font-awesome fonts-lato hmmer isa-support libblas3 libdivsufsort3 libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsqlite3-0 libuv1t64 libyaml-0-2 macsyfinder media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase openssl perl perl-modules-5.40 python3 python3-certifi python3-colorama python3-colorlog python3-dateutil python3-macsylib python3-minimal python3-networkx python3-numpy python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib python3-pytz python3-yaml python3.13 python3.13-minimal readline-common sphinx-rtd-theme-common sse4.2-support 0 upgraded, 0 newly installed, 61 to remove and 0 not upgraded. After this operation, 475 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15777 files and directories currently installed.) Removing macsyfinder (2.1.6-1) ... Removing python3-macsylib (1.0.4+dfsg-1) ... Removing python3-certifi (2026.2.25+ds-1) ... Removing ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing sphinx-rtd-theme-common (3.1.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing hmmer (3.4+dfsg-3) ... Removing ncbi-blast+ (2.17.0+ds-7) ... Removing sse4.2-support (27+b1) ... Removing isa-support:amd64 (27+b1) ... Removing python3-pandas (2.3.3+dfsg-3) ... Removing python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... Removing python3-numpy (1:2.3.5+ds-3) ... Removing liblapack3:amd64 (3.12.1-7+b1) ... Removing libblas3:amd64 (3.12.1-7+b1) ... Removing libdivsufsort3:amd64 (2.0.1-7) ... Removing python3-yaml (6.0.3-1) ... Removing python3-pytz (2025.2-6) ... Removing python3-packaging (26.0-1) ... Removing perl (5.40.1-7) ... Removing libperl5.40:amd64 (5.40.1-7) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b1) ... Removing libgdbm6t64:amd64 (1.26-1+b1) ... Removing libgfortran5:amd64 (16-20260322-1) ... Removing libgomp1:amd64 (16-20260322-1) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing libjs-sphinxdoc (8.2.3-12) ... Removing libjs-underscore (1.13.8~dfsg+~1.13.0-1) ... Removing liblmdb0:amd64 (0.9.31-1+b3) ... Removing libncbi-vdb3:amd64 (3.2.1+dfsg-2+b1) ... Removing libmbedtls21:amd64 (3.6.5-0.1) ... Removing libmbedx509-7:amd64 (3.6.5-0.1) ... Removing libmbedcrypto16:amd64 (3.6.5-0.1) ... Removing libnghttp2-14:amd64 (1.68.0-2) ... Removing libuv1t64:amd64 (1.51.0-2+b1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing ncbi-data (6.1.20170106+dfsg2-7) ... Removing ncbi-vdb-data (3.2.1+dfsg-2) ... Removing openssl (3.6.1-3) ... Removing perl-modules-5.40 (5.40.1-7) ... Removing python3-colorama (0.4.6-4) ... Removing python3-colorlog (6.10.1-1) ... Removing python3-dateutil (2.9.0-4) ... Removing python3-networkx (3.4.2-4) ... Removing python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... Removing python3 (3.13.9-3) ... Removing python3.13 (3.13.12-1) ... Removing python3-minimal (3.13.9-3) ... Removing python3.13-minimal (3.13.12-1) ... Removing libexpat1:amd64 (2.7.5-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3) ... Removing libpython3.13-stdlib:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-3+b1) ... Removing libncursesw6:amd64 (6.6+20251231-1) ... Removing libpython3.13-minimal:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-9+b1) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.42-13) ... 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'fonts-font-awesome', 'fonts-lato', 'hmmer', 'isa-support:amd64', 'libblas3:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-certifi', 'python3-colorama', 'python3-colorlog', 'python3-dateutil', 'python3-macsylib', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-yaml', 'python3.13', 'python3.13-minimal', 'readline-common', 'sphinx-rtd-theme-common', 'sse4.2-support', 'macsyfinder'] 0m37.4s INFO: Running scripts post_remove 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_remove_exceptions'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_remove_exceptions'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--purge', 'ca-certificates', 'fonts-font-awesome', 'fonts-lato', 'hmmer', 'isa-support:amd64', 'libblas3:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-certifi', 'python3-colorama', 'python3-colorlog', 'python3-dateutil', 'python3-macsylib', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-yaml', 'python3.13', 'python3.13-minimal', 'readline-common', 'sphinx-rtd-theme-common', 'sse4.2-support'] 0m37.6s DUMP: (Reading database ... 4922 files and directories currently installed.) Purging configuration files for ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which is not installed dpkg: warning: ignoring request to remove hmmer which is not installed dpkg: warning: ignoring request to remove isa-support which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libdivsufsort3 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which is not installed dpkg: warning: ignoring request to remove libjs-underscore which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblmdb0 which is not installed dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libncbi-vdb3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libperl5.40 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.12-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which is not installed Purging configuration files for ncbi-data (6.1.20170106+dfsg2-7) ... Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ... Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.6.1-3) ... Purging configuration files for perl (5.40.1-7) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which is not installed Purging configuration files for python3 (3.13.9-3) ... dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-colorama which is not installed dpkg: warning: ignoring request to remove python3-colorlog which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-macsylib which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-networkx which is not installed Purging configuration files for python3-numpy (1:2.3.5+ds-3) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pandas which is not installed dpkg: warning: ignoring request to remove python3-pandas-lib which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3.13 which is not installed Purging configuration files for python3.13-minimal (3.13.12-1) ... Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which is not installed Purging configuration files for sse4.2-support (27+b1) ... 0m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--purge', 'ca-certificates', 'fonts-font-awesome', 'fonts-lato', 'hmmer', 'isa-support:amd64', 'libblas3:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsqlite3-0:amd64', 'libuv1t64:amd64', 'libyaml-0-2:amd64', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-certifi', 'python3-colorama', 'python3-colorlog', 'python3-dateutil', 'python3-macsylib', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pytz', 'python3-yaml', 'python3.13', 'python3.13-minimal', 'readline-common', 'sphinx-rtd-theme-common', 'sse4.2-support'] 0m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--purge', 'macsyfinder'] 0m37.7s DUMP: (Reading database ... 4905 files and directories currently installed.) Purging configuration files for macsyfinder (2.1.6-1) ... 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--purge', 'macsyfinder'] 0m37.7s INFO: Running scripts post_purge 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_purge_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_purge_exceptions'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--purge', '--pending'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--purge', '--pending'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--remove', '--pending'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg', '--remove', '--pending'] 0m37.7s INFO: Running scripts post_test 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_test_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'tmp/scripts/post_test_exceptions'] 0m37.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m37.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m38.2s DEBUG: No broken symlinks as far as we can find. 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-divert', '--list'] 0m38.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'dpkg-divert', '--list'] 0m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'clean'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo', 'apt-get', 'clean'] 0m38.3s DEBUG: Recording chroot state 0m39.0s INFO: PASS: Installation and purging test. 0m39.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/shm'] 0m39.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/shm'] 0m39.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/console'] 0m39.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/console'] 0m39.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/ptmx'] 0m39.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/ptmx'] 0m39.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/pts'] 0m39.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/dev/pts'] 0m39.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/proc'] 0m39.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo/proc'] 0m39.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m39.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbps8dlzo'] 0m39.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpbps8dlzo 0m39.4s INFO: PASS: All tests. 0m39.4s INFO: piuparts run ends. ret=0 End: 2026-03-23 21:13:10 GMT